ncbi_country: USA: MI

ncbi_isolation_source: ground beef

ncbi_submitter: FDA/CFSAN


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_organism_name: Tepidisphaerales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Austria: Lake Mondsee

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter cosmopolitanus

ncbi_refseq_category: reference genome

ncbi_submitter: University of Innsbruck

ncbi_type_material_designation: assembly from type material


ncbi_strain_identifiers: Fiocruz LV3076

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV3076


ncbi_country: China

ncbi_isolation_source: chicken carcass

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: Rumen uncultured genome RUG11644

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Greece

ncbi_organism_name: Zymomonas mobilis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Niallia oryzisoli

ncbi_submitter: Hebei North University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 24


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: pecked egg yolk

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Canada: British Columbia;Vancouver

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_strain_identifiers: MGF 18

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: Sweden

ncbi_isolation_source: Turdus philomelos

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Bath


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. IFREMER_LSEM_CL2194

ncbi_submitter: IFREMER


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Enterobacter asburiae


ncbi_country: Slovenia

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National laboratory for health, environment and food


ncbi_assembly_name: freshwater MAG --- Loc080925-8-8m_bin-324

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_country: Taiwan: Off the Eluanbi coast; southern Taiwan province of China

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudooceanicola marinus

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: South Korea: Uijeongbu-Si

ncbi_isolation_source: soil

ncbi_organism_name: Pontibacter fetidus

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Streptococcus intermedius C270

ncbi_submitter: National Microbiology Laboratory, Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus intermedius;x__Streptococcus intermedius C270


ncbi_organism_name: Corynebacterium gottingense

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: South Africa

ncbi_isolation_source: seeds

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agricultural Research Council: Plant Protection Research Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_organism_name: Pseudomonas viridiflava


ncbi_organism_name: Bradyrhizobium acaciae

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: KY

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Starving control group superworm gut

ncbi_organism_name: Enterococcus sp.

ncbi_submitter: The University of Queensland


ncbi_country: Canada: New Brunswick

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Parma


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Gluconobacter cerinus

ncbi_submitter: Teagasc


ncbi_organism_name: candidate division FCPU426 bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division FCPU426;s__candidate division FCPU426 bacterium


ncbi_organism_name: Liquorilactobacillus satsumensis


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: uncultured Elusimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella aerogenes


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin32

ncbi_strain_identifiers: MOJ bin32

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Liquorilactobacillus ghanensis


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: liver

ncbi_organism_name: Salmonella enterica subsp. houtenae

ncbi_submitter: University of Sao Paulo


ncbi_country: Cameroon: South West province; Bokwai

ncbi_isolation_source: red cocoyam rhizosphere

ncbi_organism_name: Pseudomonas sessilinigenes

ncbi_submitter: Universite de Moncton


ncbi_organism_name: Porphyromonas somerae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF15-31

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: DC

ncbi_isolation_source: Urine

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education & Research, Chandigarh


ncbi_country: Spain: Las palmas

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas palmensis

ncbi_submitter: Biobab R&D S.L.


ncbi_organism_name: Camelimonas fluminis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptococcus oralis


ncbi_country: Viet Nam

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Klebsiella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pectobacterium brasiliense


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: United Kingdom: England

ncbi_strain_identifiers: BGSC 4A4

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar thuringiensis


ncbi_country: Greece:Thermopyles geothermal spring

ncbi_isolation_source: geothermal water

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of Thessaly


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Chile: Region Metropolitana

ncbi_isolation_source: stools

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Universidad de Chile


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_country: USA: Wisconsin

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Genomic Research Laboratory, GRL; Geneva University Hospital, HUG


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Aarhus University


ncbi_country: Israel: Negev desert

ncbi_isolation_source: desert sand [ENVO_00005800]

ncbi_organism_name: Bartonella krasnovii

ncbi_submitter: Hebrew university


ncbi_organism_name: Actinomyces naeslundii

ncbi_submitter: University of Malaya


ncbi_assembly_level: Chromosome

ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: JSS Academy of Higher Education & Research


ncbi_country: USA

ncbi_isolation_source: seafood

ncbi_organism_name: Vibrio parahaemolyticus S125

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S125


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Holdemanella biformis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: stool

ncbi_organism_name: Clostridium celatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Italy

ncbi_organism_name: Grimontella sp. AG753

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;x__Enterobacterales incertae sedis;g__Grimontella;x__unclassified Grimontella;s__Grimontella sp. AG753


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nagoya University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroides graminisolvens

ncbi_submitter: University of Waterloo


ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Streptomyces niveus

ncbi_strain_identifiers: SCSIO 3406

ncbi_submitter: Dezhou university


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Gilliamella sp.


ncbi_country: Uganda

ncbi_organism_name: Brucella abortus 65/157

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Capnocytophaga sp.


ncbi_organism_name: [Clostridium] clostridioforme 90A8


gtdb_type_species_of_genus: t

ncbi_country: Japan:Betsukai-machi; Hokkaido

ncbi_organism_name: Anaerocolumna cellulosilytica

ncbi_submitter: Hirosaki University


ncbi_assembly_name: Rumen uncultured genome RUG12727

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succiniclasticum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Mesorhizobium sp. LSHC420B00

ncbi_submitter: University of Southern California


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043


ncbi_organism_name: Streptomyces roseifaciens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: South Korea: Suwon

ncbi_isolation_source: cathodes of microbial fuel cell

ncbi_organism_name: Phreatobacter cathodiphilus

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Proteiniphilum sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Research In Tuberculosis


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_organism_name: uncultured Parvibacter sp.

ncbi_submitter: University of Florida


ncbi_isolate: Nocardioides sp. AX2bis

ncbi_organism_name: Nocardioides sp. AX2bis

ncbi_strain_identifiers: Nocardioides sp. AX2bis

ncbi_submitter: Elham Karimi


ncbi_country: USA: Waltham; Massachusetts

ncbi_isolation_source: lab construct

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: The Ohio State University


ncbi_organism_name: Streptomyces longispororuber


ncbi_submitter: National Veterinary Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Molade


ncbi_country: Germany: Cologne

ncbi_isolation_source: soil

ncbi_organism_name: Terrabacter sp. Soil810

ncbi_submitter: ETH Zurich


ncbi_organism_name: bacterium


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Alloalcanivorax sp. C16-1

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Candidiatus Paracoxiella cheracis

ncbi_submitter: University of Melbourne


ncbi_organism_name: Escherichia coli

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Variovorax beijingensis


ncbi_organism_name: Pseudopelagicola sp. nBUS_19

ncbi_submitter: University of Washington


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Limosilactobacillus fermentum


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_organism_name: Actinobacteria bacterium RBG_16_68_21

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium RBG_16_68_21


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Costa Rica

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: WI

ncbi_isolation_source: intestine goose branta

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_organism_name: Prevotella sp. UBA641


ncbi_country: Poland

ncbi_isolation_source: Slow sand biofilter

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Neuchatel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Beijing

ncbi_organism_name: Mixta tenebrionis

ncbi_submitter: Beijing Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huadong Hospital Affiliated to Fudan University


ncbi_isolate: synthetic

ncbi_organism_name: Mycoplasma mycoides subsp. capri

ncbi_submitter: SIB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Pyrinomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Nocardia wallacei

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: USA

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pullichristensenella;s__Candidatus Pullichristensenella stercoripullorum


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Cycloclasticus sp.

ncbi_submitter: University of Califronia, Santa Barbara


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: Canada: Toronto

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: India: New Delhi

ncbi_isolation_source: NP swab

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Christian Medical College


ncbi_country: Netherlands

ncbi_isolation_source: disinfectant-free drinking water; site 5

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: University of Glasgow


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: seawater

ncbi_organism_name: Rhodobacterales bacterium HKCCA1303

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Aquimarina sp. 2201CG1-2-11

ncbi_submitter: Hannam University


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: uncultured Allobaculum sp.


ncbi_country: Chile: San Fernando

ncbi_isolation_source: Macerated buds

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: INIA Rayentue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: United Kingdom

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Gilliamella sp.

ncbi_submitter: EMG


ncbi_country: Japan: Okinawa; Ishigaki Island

ncbi_isolation_source: slime

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Paraclostridium sordellii


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Shigella sonnei

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Infectious Diseases Area, Respiratory Infection and Antimicrobial Resistance Group, Biogipuzkoa Heal


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea: Changwon

ncbi_isolation_source: human skin

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Changwon National University


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Brigham Young University


ncbi_organism_name: Streptomyces sp. NPDC093681

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Borreliella bavariensis

ncbi_submitter: LMU Munich


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_country: Austria: Vienna; Danube

ncbi_isolation_source: river water

ncbi_strain_identifiers: KpWDB

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Anaerofilum sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Romania: Cekend

ncbi_isolation_source: landfill leachate-treating activated sludge bioreactor

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: ELTE Eotvos Lorand University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Labbmm Biomol Group


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces globisporus


ncbi_isolation_source: unknown


ncbi_organism_name: uncultured Ilumatobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Desulfobulbus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: China: Shanghai

ncbi_isolation_source: hospital

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Peru: Caraz

ncbi_isolation_source: blood

ncbi_organism_name: Bartonella ancashensis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: River Elbe downstream from Hamburg habour

ncbi_isolation_source: river sediment

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Estacion Experimental del Zaidin, Spanish National Research Council


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Algeria

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces geysiriensis

ncbi_submitter: Cape Peninsula University of Technology


ncbi_country: Antarctica

ncbi_isolation_source: stone

ncbi_organism_name: Massilia rubra

ncbi_submitter: Masaryk University


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Dyella ginsengisoli

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Buchnera aphidicola (Kurisakia onigurumii)

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China

ncbi_organism_name: Streptococcus agalactiae serogroup III

ncbi_submitter: GSK Vaccines


ncbi_organism_name: Actinosynnema sp. NPDC051121

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 21-24 cm

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nigde Omer Halisdemir University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Faecaligallichristensenella;s__Candidatus Faecaligallichristensenella faecipullorum


ncbi_organism_name: Ruthenibacterium sp.


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Hawaii Graf Lab


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: uncultured Massilia sp.

ncbi_submitter: EMG


ncbi_assembly_name: SR

ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Serratia sp.

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: MRD-ZNGN

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Institute of Agrophysics, Polish Academy of Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: bacterium EF100-94H03 bin56

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__bacterium EF100-94H03 bin56


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: University of Michigan

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Poultry Vienna (after processing)

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_assembly_name: freshwater MAG --- MJ120716A_bin-0714

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Salegentibacter sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Malawi

ncbi_isolation_source: CSF


ncbi_country: Spain

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Ireland

ncbi_isolation_source: Poultry/Soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_organism_name: Defluviitoga tunisiensis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Norway

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: France

ncbi_isolation_source: Rectal screening

ncbi_organism_name: Proteus mirabilis

ncbi_strain_identifiers: VAC

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. BRX10-7

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Montreal


ncbi_country: Denmark: Horsens

ncbi_isolation_source: seed

ncbi_organism_name: Duffyella gerundensis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mucispirillum sp.


ncbi_country: USA: New York; Conesus Lake

ncbi_organism_name: Candidatus Fonsibacter sp.

ncbi_submitter: University of Montana

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;x__unclassified Candidatus Fonsibacter;s__Candidatus Fonsibacter sp.


ncbi_country: Germany

ncbi_isolation_source: Honey

ncbi_organism_name: Bombella mellum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: Shanghai Ocean University

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Pseudoxanthomonas sp. Root630

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_isolation_source: Throat (pharynx)

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: US Food and Drug Administration


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: SponGES


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_country: Italy

ncbi_isolation_source: fruit

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: KU Leuven

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2763

ncbi_submitter: University of Queensland


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Honghe

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Lactobacillus sp. B4005

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptomyces ochraceiscleroticus

ncbi_strain_identifiers: NRRL ISP-5594

ncbi_submitter: University of Illinois


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: feces

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Arenibacter algicola

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Iraq

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Babylon / College of Medicine


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: crop swab

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Friedmanniella sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Industrial ABE fermentation

ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: LanzaTech Inc


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Rothia sp.


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Nitronereus thalassa

ncbi_strain_identifiers: EB

ncbi_submitter: Division of Microbial Ecology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Segatella copri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: USA: GA

ncbi_isolation_source: Pork Chop

ncbi_submitter: FDA


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Geobacter sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Actinoalloteichus sp. AHMU CJ021

ncbi_strain_identifiers: AHMU CJ021

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: Tsinghua University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_country: India

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Translational Health Science and Technology Institute (THSTI)


ncbi_country: USA:New York;Manhattan

ncbi_isolation_source: Xenic protist cell culture

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: American Museum of Natural History


ncbi_country: China: Yunnan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_submitter: Beijing Institute of Genomics, CAS


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Borreliella yangtzensis

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: India: Bheemli; Andhra Pradesh

ncbi_isolation_source: seawater of a fish culture pond

ncbi_organism_name: Mariniradius saccharolyticus AK6

ncbi_submitter: Institute of Microbial Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_organism_name: uncultured Caulobacter sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_country: Switzerland

ncbi_isolation_source: Gruyere

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P145P

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: AAFC


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Oliverpabstia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Thalassovita sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Yunfu; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: South china normal university


ncbi_organism_name: Escherichia coli O111:H8

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of West London


ncbi_submitter: University of the Witwatersrand


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA

ncbi_isolation_source: water creek

ncbi_submitter: FDA/CFSAN


ncbi_country: Netherlands

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: RIVM


ncbi_country: Sri Lanka: Kandy

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: stool

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Austria

ncbi_isolation_source: hard cheese

ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: University of Natural Resources and Life Sciences Vienna (Universitaet fuer Bodenkultur Wien)


ncbi_organism_name: Candidatus Competibacterales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Competibacterales;x__unclassified Candidatus Competibacterales;s__Candidatus Competibacterales bacterium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: James Cook University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_country: China: Shenzhen

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F73187

ncbi_submitter: Broad Institute


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Helicobacter sp.


ncbi_organism_name: Mycolicibacter kumamotonensis

ncbi_submitter: San Raffaele Scientific Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Arthrobacter sp. efr-133-TYG-118

ncbi_submitter: University of Chicago


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: United Arab Emirates: Dubai

ncbi_organism_name: Orientia chuto str. Dubai

ncbi_strain_identifiers: Dubai

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Orientia;s__Candidatus Orientia mediorientalis;x__Orientia chuto str. Dubai


ncbi_organism_name: Arthrobacter sp. WCS2018Hpa-5a

ncbi_submitter: Utrecht University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: Human (gut)

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: University of Galway


ncbi_country: Germany

ncbi_isolation_source: joint

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Streptomyces sp. ME01-24h

ncbi_submitter: Oregon State University


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: geothermally-influenced stream

ncbi_organism_name: Fischerella thermalis WC559

ncbi_submitter: University of Montana


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_assembly_name: Salmonella enterica CVM N47725 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus cereus group sp. BC20

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC20


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Broiler parent111

ncbi_submitter: University of Copenhagen


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Fish hatchery

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: throat

ncbi_organism_name: Mycoplasmopsis edwardii


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Acutalibacter muris


ncbi_country: Greece

ncbi_isolation_source: colostomy

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: bioMerieux


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: uncultured Treponema sp.


ncbi_isolation_source: vaginal

ncbi_organism_name: Streptococcus sp. HMSC066E07

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter pittii


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Streptomyces sp. MCL20-2

ncbi_submitter: USDA ARS


ncbi_country: France: Lille

ncbi_isolation_source: broncho-alveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Streptomyces parvus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: cold seep

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Lunds Universitet


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Somov Institute of Epidemiology and Microbiology


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: McMaster University


ncbi_organism_name: Hominilimicola sp.


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Phycisphaerales bacterium JB063

ncbi_submitter: JNTUH


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Southern California


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Azoarcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: Australia: Brisbane

ncbi_isolation_source: bioreactor

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Queensland university of technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Chlamydia muridarum

ncbi_submitter: UTHSCSA


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Mobiluncus porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: zhejiang University


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou university


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: sepsis

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Netherlands

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Sorbonne University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pantoea agglomerans


ncbi_organism_name: uncultured Fibrobacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__environmental samples;s__uncultured Fibrobacterota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG183

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Canada: Toronto; ON

ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Veillonella sp.


ncbi_isolation_source: marine

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolate: AOP7_C1_surf _bin _9

ncbi_organism_name: Psychroflexus halocasei

ncbi_strain_identifiers: AOP7_C1_surf _bin _9

ncbi_submitter: Genoscope


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Netherlands: Olburgen

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; full scale (600m3) reactor for the removal of ammonium from wastewater from the potato processing industry

ncbi_organism_name: Bacteroidetes bacterium OLB10

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium OLB10


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas asgharzadehiana

ncbi_submitter: Cornell University


ncbi_organism_name: Aeromonas media

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Salmonella sp. NW1213

ncbi_submitter: Sichuan University


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei


ncbi_assembly_name: freshwater MAG --- Umea2p3_bin-0418

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Spain

ncbi_isolation_source: Mastitic milk

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Poland: Bialowieza National Park

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Bialystok


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: human skin

ncbi_organism_name: Prevotella amnii

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Streptomyces sp. NPDC059687

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 163 (4-4697553)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 163 (4-4697553)


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: CLUE-TERRA


ncbi_country: South Korea: East Sea

ncbi_isolation_source: sponge

ncbi_organism_name: Parashewanella spongiae

ncbi_submitter: Guangxi University


ncbi_organism_name: Nitrosospira briensis C-128

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly designated as reftype


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_country: Israel: Jerusalem; The Tisch Family Biblical Zoo

ncbi_organism_name: Shouchella clausii

ncbi_submitter: The Hebrew University of Jerusalem


ncbi_isolation_source: manure wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: Phoenix; AZ

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Sao Paulo


ncbi_country: Puerto Rico: Barceloneta

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Prof. Bart Currie, Menzies School of Health Research


ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Bordetella holmesii F627

ncbi_submitter: CDC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_organism_name: Neglectibacter timonensis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: lab collection

ncbi_submitter: Tianjin university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis;x__Bacillus subtilis subsp. subtilis str. 168


ncbi_country: China

ncbi_submitter: South China Agricultural University


ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMBL-EBI


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacterium sp.


ncbi_country: New Zealand

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Massey University


ncbi_country: Sweden: Gothenburg

ncbi_organism_name: Sphingomonas canadensis

ncbi_submitter: Jiangxi Normal University


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: NIH/NHGRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Wilmar International Limited


ncbi_assembly_name: freshwater MAG --- AM-2014-D1_bin-617

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Salmonella sp. NW399

ncbi_submitter: Sichuan University


ncbi_organism_name: Kitasatospora sp. NPDC094011

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Fluviicola sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Intestinibacter sp.


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UNICAMP


ncbi_assembly_name: freshwater MAG --- LaPlata-7m-a_bin-459

ncbi_organism_name: uncultured bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Mediterraneibacter faecis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Washington University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_isolation_source: activated sludge from wastewater treatment plant

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Northeastern University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: Brevibacillus agri BAB-2500 v3.1

ncbi_organism_name: Brevibacillus agri BAB-2500

ncbi_submitter: Gujarat Genomics Initiative


ncbi_country: Germany

ncbi_isolation_source: Fermented freshwater fish

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus sp. DIV0176

ncbi_submitter: Broad Institute


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rothia aeria

ncbi_submitter: EMG


ncbi_organism_name: Hafnia sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Auckland


ncbi_country: Japan:Kanagawa; Kawasaki

ncbi_isolation_source: marine sediment

ncbi_organism_name: Marinobacter salsuginis

ncbi_submitter: National Institute of Technology and Evaluation (NITE)


ncbi_country: Kenya

ncbi_organism_name: Verrucomicrobia bacterium UBA7596

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA7596


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Cohnella hongkongensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolate: Reference

ncbi_strain_identifiers: Reference

ncbi_submitter: dtu national food institute


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: small intestine

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Texas

ncbi_isolation_source: hydraulic fracturing flowback water

ncbi_organism_name: Bacillus sp. G16

ncbi_submitter: Michigan Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. G16


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Jersey

ncbi_organism_name: Staphylococcus simiae

ncbi_submitter: University of Bath


ncbi_organism_name: Lacipirellulaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_organism_name: Vibrio cincinnatiensis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus cecorum;x__Enterococcus cecorum DSM 20682 = ATCC 43198


ncbi_country: Canada: Vancouver

ncbi_isolation_source: stool of a ~10 day-old infant on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Healthy skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: JH

ncbi_submitter: University of Groningen


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Italy: Apulia

ncbi_isolation_source: blood culture

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_country: China: Jiangsu Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Philippines: Manleluag spring; Pangasinan

ncbi_isolation_source: alkaline ophiolitic spring

ncbi_organism_name: Exiguobacterium sp. AB2

ncbi_submitter: University of Philippines - Diliman

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. AB2


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_submitter: SC


ncbi_organism_name: Bacillus basilensis

ncbi_submitter: Ghent University


ncbi_country: United Kingdom: Boho Highlands; Fermanagh

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. CJ_13

ncbi_submitter: Ruder Boskovic Institute


ncbi_country: Hungary: Lake Ferto

ncbi_isolation_source: water

ncbi_organism_name: Arundinibacter roseus

ncbi_submitter: Eotvos Lorand University


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter baumannii TYTH-2

ncbi_submitter: National Tsing Hua University


ncbi_country: Canada: BC

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Buttiauxella sp.

ncbi_submitter: EMG


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Groningen


ncbi_country: Pacific Ocean: Solomon Sea

ncbi_isolation_source: Lavastone

ncbi_organism_name: Pseudoalteromonas rubra

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Neisseria lactamica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Wanju

ncbi_isolation_source: environmental

ncbi_organism_name: Klebsiella sp. V115_8

ncbi_submitter: Max Rubner-Institut


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD9021

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonas sp.


ncbi_organism_name: Leuconostoc mesenteroides subsp. mesenteroides

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Alistipes inops

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas moraviensis

ncbi_submitter: PJ0150512022 by Rural Development Administration


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: Plaque

ncbi_organism_name: Actinomyces naeslundii

ncbi_submitter: King's College London


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: Bielefeld University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Italy

ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Bacillus mobilis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_country: Australia

ncbi_isolation_source: Casey Hospital

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcaceae bacterium AF77-01CM03A

ncbi_submitter: BGI-Shenzhen


ncbi_country: Norway: Lake Steinsfjorden

ncbi_organism_name: Planktothrix prolifica NIVA-CYA 540

ncbi_strain_identifiers: NIVA-CYA 540

ncbi_submitter: University of Oslo


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: University of California Berkeley


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Alistipes communis


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_isolate: Faeces

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Synechococcus sp. MIT S9452

ncbi_strain_identifiers: MIT S9452

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: SponGES


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Verrucomicrobia bacterium UBA3636

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA3636


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC056921

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Boston

ncbi_organism_name: Flavonifractor plautii


ncbi_submitter: Colorado State University


ncbi_assembly_name: Rumen uncultured genome RUG12191

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Microbial feature

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Carb01 63

ncbi_submitter: Maasstad Hospital


ncbi_country: India

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NBC_00334

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Hawaii

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: milk

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Flavilitoribacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Empedobacter sp. UBA811

ncbi_submitter: University of Queensland


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Hefei

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. T21Q-yed

ncbi_submitter: Anhui Agricultural University


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: Blood culture

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: Russia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis CTRI-4

ncbi_submitter: Research Institute for Physical-Chemical Medicine, Moscow, Russia


ncbi_country: China: Beijing

ncbi_isolation_source: anal swab sample

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Center for Disease Prevention and Control of PLA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA3284


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Soil

ncbi_organism_name: Achromobacter marplatensis

ncbi_submitter: GHENT UNIVERSITY


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG