ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium RIFOXYC1_FULL_40_10


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Thailand: Ubon

ncbi_genome_representation: full

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Mahidol University


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Ontario

ncbi_isolation_source: ANIMAL-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20130345


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_assembly_level: Scaffold

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Halomonas sp.

ncbi_submitter: EMG


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Yangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_assembly_level: Complete Genome

ncbi_country: USA: BIFSCo Region 5

ncbi_isolation_source: bovine pre-evisceration carcass

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1810


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: stray dog feces


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_country: China:Zhejiang province;Hangzhou

ncbi_isolation_source: water sink surface

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Genskey


gtdb_representative: t

ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Ohio

ncbi_isolation_source: aqueous sample from a deep subsurface shale carbon reservoir

ncbi_organism_name: Halanaerobium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Anhui

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_country: USA: FL

ncbi_isolation_source: uterus (Bos taurus)

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Mesorhizobium sp. LNJC405B00

ncbi_submitter: University of Southern California


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: Animal and Plant Health Agency


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: WV

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Rutgers University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Chlamydia sp. from X. bocki genome v1

ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Chlamydia sp.

ncbi_submitter: Population Genetics and Bioinformatics


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Pseudomonas extremaustralis

ncbi_submitter: Colorado State University


ncbi_country: China: Beijing City

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: France: Poitou-Charentes

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: freshwater lake Microcystis colony

ncbi_organism_name: Cutibacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Switzerland: Basel

ncbi_isolation_source: waste water

ncbi_submitter: University of Zurich


ncbi_country: Jamaica

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Public Health Ontario


ncbi_submitter: Sichuan University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Hangzhou Medical College


gtdb_type_species_of_genus: t

ncbi_organism_name: Marinococcus halophilus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Shandong University


ncbi_organism_name: Roseibium sp.

ncbi_submitter: Quanzhou Normal University


ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Children's Hospital affiliated to Zhejiang University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Porto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Paracoccaceae bacterium


ncbi_organism_name: Salmonella sp. NW468


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Alistipes putredinis


ncbi_country: Mexico: Campeche Knolls; Gulf of Mexico

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__bacterium endosymbiont of Escarpia laminata


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_country: USA: Vidalia Region; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Crenothrix polyspora

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter hormaechei subsp. oharae

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. oharae


ncbi_organism_name: Modestobacter roseus

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Campbellbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Campbelliibacteriota;x__unclassified Candidatus Campbellbacteria;s__Candidatus Campbellbacteria bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: Tongji University


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Paris-Sud


ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Cacconaster caballi

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cacconaster;s__Candidatus Cacconaster caballi


ncbi_organism_name: Candidatus Syntrophosphaera sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;x__unclassified Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera sp.


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_country: Netherlands

ncbi_isolation_source: European Space Agency ESTEC HYDRA facility Clean room surface

ncbi_organism_name: Pseudobacillus badius

ncbi_submitter: Institute of Microbial Technology


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolate: cow fecal

ncbi_strain_identifiers: cow fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Texas; Kleberg County; Los Olmos Creek

ncbi_isolation_source: hypersaline river water

ncbi_organism_name: Salinivibrio sp. VYel9

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-124

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Tabrizicola sp.

ncbi_strain_identifiers: new MAG-124

ncbi_submitter: Micoorganism


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Xinjiang Agricultural University


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: CUL-TANUVAS 2020

ncbi_submitter: Tamil Nadu Veterinary and Animal Sciences University


ncbi_organism_name: Aurantimonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Paenibacillus sp. FSL F4-0236

ncbi_submitter: Penn State


ncbi_country: China: Guangzhou

ncbi_isolation_source: intestinal

ncbi_organism_name: Escherichia coli

ncbi_submitter: SouthChina Agriculture University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shantou University Medical College


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin4

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: MDV bin4

ncbi_submitter: Monash University


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Department of Laboratory Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Australia: Sydney

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Soochow

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: SZECL

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_country: Bolivia: Puente Lipari; La Paz

ncbi_isolation_source: Choqueyapu River

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Brachybacterium sp. UMB0905

ncbi_submitter: Loyola University Chicago


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolate: SETU

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: SETU;Tu

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_country: Brazil

ncbi_isolation_source: polluted water

ncbi_organism_name: Yersinia kristensenii

ncbi_submitter: SC


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospira sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GP01-A5

ncbi_submitter: Arkin Lab


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Flavipsychrobacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EMG


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces murinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; MPn+N+C amendment

ncbi_organism_name: Nevskia sp.

ncbi_submitter: University of Montana


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Candidatus Avelusimicrobium fimicolum

ncbi_submitter: SAHMRI


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Pacific Ocean: near Hawaii

ncbi_isolation_source: sea water

ncbi_organism_name: Erythrobacter sp. HI0077

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin25

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MOJ bin25

ncbi_submitter: Monash University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_submitter: National Cheng Kung University Hospital


ncbi_organism_name: Enterococcus sp. DIV0197b

ncbi_submitter: Broad Institute


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Planococcus koreensis

ncbi_strain_identifiers: OC-PG-Soil

ncbi_submitter: Colorado State University


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Hominenteromicrobium mulieris

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Neomicrothrix parvicella

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Desantisiibacteriota;s__Candidatus Desantisbacteria bacterium CG_4_10_14_3_um_filter_40_18


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Chongqing

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_country: USA: Evanston; Illinois

ncbi_isolation_source: shower water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Japan

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Niigata University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Ventrenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Ventrenecus;x__unclassified Candidatus Ventrenecus;s__Candidatus Ventrenecus sp.


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Exiguobacterium sp.

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp.


ncbi_organism_name: Acetobacteraceae bacterium


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: RIKEN-BRC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium Isolate-084 (Janvier)

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Thailand: Songkhla

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_organism_name: Agrobacterium fabrum

ncbi_strain_identifiers: Arqua

ncbi_submitter: Institute for Agricultural and Fisheries and Food Research (ILVO)


ncbi_country: China

ncbi_organism_name: Sphingobacterium mizutaii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Hominenteromicrobium mulieris

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: Finland

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-082

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Kansas State University


ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Denmark

ncbi_isolation_source: Krokodille Zoo

ncbi_organism_name: Testudinibacter sp. TR-2022

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Waterloo


ncbi_country: Thailand

ncbi_organism_name: Pseudomonas syringae

ncbi_strain_identifiers: CFBP 8692

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Egypt: Beni Suef; Naser

ncbi_isolation_source: root nodules

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: msa univeristy


ncbi_country: China: Bohai Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Ocean University of China


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB241_529J11

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Viet Nam: Do Xongpha

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces vietnamensis

ncbi_refseq_category: reference genome

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Greece: Aridea

ncbi_organism_name: Mycoplasmopsis agalactiae

ncbi_submitter: University of Bern


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sciensano


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__environmental samples;s__uncultured Candidatus Marinamargulisbacteria bacterium


ncbi_country: China: Guangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangzhou center for disease control and prevention


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: secretion

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Fourth Hospital of Hebei Medical University


ncbi_country: Canada: Quebec

ncbi_isolation_source: sick fish

ncbi_organism_name: Aeromonas salmonicida subsp. salmonicida

ncbi_submitter: Universite Laval


ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;x__unclassified Candidatus Methylacidiphilales;s__Candidatus Methylacidiphilales bacterium


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_submitter: University of Queensland


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alcanivorax sp. UBA4527


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Streptococcus gordonii


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA108

ncbi_submitter: Broad Institute


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Indonesia: South Sulawesi

ncbi_organism_name: Ralstonia syzygii

ncbi_submitter: INRAE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: FDA/CDC


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Rhodopirellula baltica SH 1

ncbi_submitter: Max-Plank-Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rhodopirellula;s__Rhodopirellula baltica;x__Rhodopirellula baltica SH 1


ncbi_assembly_name: Rumen uncultured genome RUG287

ncbi_organism_name: Kandleria vitulina

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Thermoanaerobaculaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_isolation_source: Rice seed

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 co-cultured with S. maltophilia in Synthetic Cystic Fibrosis Media for 24 days in the absence of imipenem

ncbi_submitter: University of Warwick


ncbi_organism_name: Campylobacter lari

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_submitter: University of Calgary


ncbi_submitter: VETUNI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Streptomyces californicus


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: sheep gut metagenome


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: freshwater MAG --- Ki1-0-7m_bin-0303

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: water

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Wageningen Bioveterinary Research


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Baltic Sea

ncbi_organism_name: Proteobacteria bacterium UBA3020

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA3020


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Variovorax boronicumulans

ncbi_submitter: Nanjing normal university


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Brazil: Recife

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aggeu Magalhaes Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita' degli Studi di Milano


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Germany

ncbi_isolation_source: valvular endocarditis

ncbi_organism_name: Wielerella bovis

ncbi_submitter: University of Bern


ncbi_country: USA: Texas

ncbi_organism_name: Chromobacterium alkanivorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agriculture University


ncbi_country: Pacific Ocean: NW Rota-1 Seamount

ncbi_organism_name: Lebetimonas sp. JS170

ncbi_submitter: Marine Biological Lab


ncbi_organism_name: uncultured Octadecabacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R023;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 76 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_isolation_source: Aphanamixis polystachya leaf

ncbi_organism_name: Niallia taxi

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: University of Copenhagen


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_strain_identifiers: acrnp

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus infantis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_country: France

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris-Sud


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: WHRI 6013

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured PS1 clade bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__environmental samples;s__uncultured PS1 clade bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Tara Oceans DNA samples corresponding to size fractions for protist

ncbi_organism_name: Prochlorococcus sp. UBA3999

ncbi_submitter: University of Queensland


ncbi_country: Seychelles: Aldabra Atoll; Westpools; South Island [GAZ00041349]

ncbi_isolation_source: hypersaline water

ncbi_organism_name: Psychroflexus sp. ALD_RP9

ncbi_submitter: CHARON- DFG Forschergruppe 1644 - Phase II


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Brazil

ncbi_strain_identifiers: CFBP 7119

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. glycines;x__Xanthomonas citri pv. glycines CFBP 7119


ncbi_organism_name: Klebsiella pneumoniae 1162281

ncbi_submitter: GlaxoSmithKline


ncbi_country: Colombia: Barranquilla

ncbi_submitter: Universidad El Bosque


ncbi_assembly_name: BSN149 Contigs

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: a diseased mushroom cap

ncbi_organism_name: Pseudomonas tolaasii PMS117

ncbi_submitter: University of Exeter


ncbi_country: USA: Atlanta

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Euphydryas aurinia


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: China Agricultural University


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21235


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_organism_name: Bacillus subtilis subsp. natto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. natto


ncbi_country: United Kingdom

ncbi_isolation_source: kidney

ncbi_organism_name: Leptospira interrogans serovar Copenhageni

ncbi_submitter: University of Agriculture in Krakow


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Chicago


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Malaysia: Johor

ncbi_isolation_source: blood

ncbi_submitter: Institute for medical research


ncbi_isolation_source: surface water

ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: NAK 166

ncbi_submitter: Wageningen Plant Research


ncbi_assembly_name: freshwater MAG --- Umea3p2_bin-0570

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Rhizobium sp. Leaf202

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: DC Humus outbreak

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Weeksellaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Soft tissue

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Alcanivorax sp. NBRC 102024

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: Friedrich-Schiller University Jena


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Diaphragm tissue

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: China: Guangxi

ncbi_isolation_source: root

ncbi_organism_name: Jiella endophytica

ncbi_submitter: Research Center for Medicine & Biology


ncbi_organism_name: Blautia obeum

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Propionibacterium sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: British Columbia;Surrey

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Sutterella wadsworthensis


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Priestia sp. YIM B13480

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;x__unclassified Priestia;s__Priestia sp. YIM B13480


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: bglFP 6745

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Xanthobacter sp. VTT E-85242

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Candidatus Pacearchaeota archaeon

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;x__Candidatus Pacearchaeota;x__unclassified Candidatus Pacearchaeota;s__Candidatus Pacearchaeota archaeon


ncbi_organism_name: Capnocytophaga granulosa

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_organism_name: Sorangium cellulosum

ncbi_strain_identifiers: So ce307

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: France: Paris

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-b_bin-253

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Rhodococcus sp. NPDC019616

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NPDC019616


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: South Korea: Wanju

ncbi_isolation_source: Lettuce

ncbi_organism_name: Lelliottia wanjuensis

ncbi_submitter: Max Rubner-Institut


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;s__Citrobacter freundii;x__Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Methyloversatilis sp.

ncbi_submitter: Kiel University


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Gansu

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus AMMC6114

ncbi_submitter: Broad Institute


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_country: India: Chilika Lake; Odisha

ncbi_isolation_source: Brackish lake sediment

ncbi_organism_name: Streptomyces barkulensis

ncbi_submitter: KIIT School of Biotechnology, KIIT University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: University of Chicago


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: China

ncbi_organism_name: Pontibacillus litoralis JSM 072002

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Pontibacillus;s__Pontibacillus litoralis;x__Pontibacillus litoralis JSM 072002


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: environmental

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Clemson University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: lawn soil

ncbi_organism_name: Ralstonia sp. MD27

ncbi_submitter: University of Massachusetts Dartmouth


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Cyanide and thiocyanate bioreactor

ncbi_organism_name: Acidovorax sp. SCN 65-28

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Norway: Bergen

ncbi_isolation_source: biopsy

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Rostock University Medical Center


ncbi_submitter: Fudan University


ncbi_organism_name: Aerococcus urinae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020046264

ncbi_submitter: Broad Institute


ncbi_submitter: Competence Network PathoGenoMik

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus carnosus;x__Staphylococcus carnosus subsp. carnosus TM300


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Colorado State University


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LAU


ncbi_country: Australia: Queensland

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Menzies School of Health Research


ncbi_country: China:Henan; Nanyang

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: brackish water

ncbi_organism_name: Microbacter sp. EMBS2025

ncbi_submitter: Eminent Biosciences, Indore,MP, India, CADD,Dept of Bioinformatics, Alagappa University, Tamil Nadu.


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC007157

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: IN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotella sp. P6B4

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Amygdalobacter nucleatus

ncbi_submitter: Fred Hutchinson Cancer Center


ncbi_isolation_source: rhizosphere soil culture M52

ncbi_organism_name: Lysinibacillus sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Microvirga arabica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Hong Kong

ncbi_organism_name: Ruegeria sp. HKCCE4148

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: uncultured Alistipes sp.


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: Pig Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Citrobacter freundii complex sp. CFNIH7

ncbi_submitter: NIH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter freundii complex sp. CFNIH7


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Ares Genetics


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Rhodococcus sp. NPDC058523

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NPDC058523


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tyumen State University


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Candidatus Avedoeria danica

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Epilineales;f__Candidatus Epilineaceae;g__Candidatus Avedoeria;s__Candidatus Avedoeria danica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Epilineales;f__Candidatus Epilineaceae;g__Candidatus Avedoeria;s__Candidatus Avedoeria danica


ncbi_country: China

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Moorellales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: Ohio

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Wolbachia endosymbiont of Diaphorina citri

ncbi_strain_identifiers: DC strain2

ncbi_submitter: International Psyllid Genome Consortium


ncbi_organism_name: uncultured Erysipelothrix sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 2281

ncbi_submitter: Ghent University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: uncultured Maribrevibacterium sp.


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 1291

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Ectopseudomonas hydrolytica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces goshikiensis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- Loc090402-8m_bin-0819

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bacillus cereus group sp. BC328

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC328


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: University of Georgia


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: United Kingdom: Carmarthen

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: SC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Cuba: Santa Cruz del Norte

ncbi_isolation_source: Cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-343

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_strain_identifiers: new MAG-343

ncbi_submitter: Micoorganism


ncbi_country: Australia: Brisbane

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: Denmark

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Xiamen University


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: uncultured Salegentibacter sp.

ncbi_submitter: EMG


ncbi_country: France

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Imperial College London


ncbi_country: China: Zhejiang

ncbi_isolation_source: Abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: Raspberry juice

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: LpRas

ncbi_submitter: Karolinska Institutet


ncbi_country: New Zealand: Christchurch

ncbi_submitter: University of Canterbury


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptomyces coeruleoprunus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: fermented milk

ncbi_submitter: Beijing Technology and Business University (BTBU)


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: India: Punjab; Ludhiana; Khandoor

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Sphingobium sp. TA15

ncbi_submitter: Graduate School of Life Sciences, Tohoku University


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus sp. C101(2024)

ncbi_submitter: Northwest A & F University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium CG_4_10_14_0_2_um_filter_33_14


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: India

ncbi_isolation_source: Rice seed

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Norway: Oslo

ncbi_organism_name: Sphingomonas sp. IBVSS1

ncbi_submitter: University of Oslo


ncbi_country: Colombia: Bogota

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Universidad El Bosque


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: sputum from cystic fibrosis patient

ncbi_submitter: University Montpellier Service de Microbiologie et Hygiene Hospitaliere CHU Nimes


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: China CDC


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Slackia exigua

ncbi_submitter: University of Chicago


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA06

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_country: Switzerland

ncbi_isolation_source: scaleded sausage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_isolation_source: liver

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lacrimispora saccharolytica

ncbi_submitter: Biomin Research Center


ncbi_assembly_name: Bifidobacterium strain A11

ncbi_country: USA: Tucson; AZ

ncbi_isolation_source: isolated from honey bee gut

ncbi_organism_name: Bifidobacterium sp. A11

ncbi_submitter: University of Arizona


ncbi_organism_name: Streptomyces echinoruber

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Wolbachia endosymbiont of Zaprionus taronus

ncbi_submitter: University of Montana


ncbi_country: Russia: Moscow

ncbi_isolation_source: liquor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_submitter: China Agricultural University


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Portugal: Leiria

ncbi_isolation_source: river water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidade de Aveiro


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Ibaraki University, college of agriculture

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;x__unclassified Burkholderiaceae;s__bacterium endosymbiont of Mortierella elongata FMR23-6


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides ovatus CAG:22

ncbi_submitter: DTU


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_isolation_source: terrestrial

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Maribacter sp.

ncbi_submitter: Monash University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The British University in Egypt


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Ornithinimicrobium sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Kenya: Kakamega

ncbi_genome_representation: partial

ncbi_isolation_source: pus swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: MASINDE MULIRO UNIVERSITY OF SCIENCE AND TECHNOLOGY


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: EMG


ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: China: Beijing

ncbi_isolation_source: abdominal fluid

ncbi_submitter: Peking University People's Hospital


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Desulfotignum sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Promicromonosporaceae;g__Xylanimonas;s__Xylanimonas pachnodae;x__Xylanimicrobium pachnodae JCM 13526 = NBRC 107786


ncbi_country: USA: Hawaii

ncbi_isolation_source: Bronchial aspirate

ncbi_organism_name: Capnocytophaga leadbetteri

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_assembly_name: NGEN (DNA Star)

ncbi_country: USA: MN

ncbi_isolation_source: fecal material

ncbi_organism_name: Lactococcus garvieae TRF1

ncbi_submitter: Gateway Technical College


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Southern Federal University


ncbi_organism_name: Geodermatophilaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Gordonia rhizosphera NBRC 16068

ncbi_submitter: The third institute of Oceanography


ncbi_organism_name: Salmonella sp. NW988

ncbi_submitter: Sichuan University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UNIVERSIDAD AUTONOMA CHAPINGO


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Sulfurovaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Leptothrix sp. (in: b-proteobacteria)

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Sphaerotilaceae;g__Leptothrix;x__unclassified Leptothrix (in: b-proteobacteria);s__Leptothrix sp. (in: b-proteobacteria)


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: USA: Indian River Lagoon; Florida

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Central Florida


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Acinetobacter baumannii MRY09-0642

ncbi_submitter: National Institute of Infectious Diseases, Japan


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: McGill University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Dialister hominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Vulcanimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Yinshan Lead-Zinc Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Greece: Athens

ncbi_isolation_source: stool samples

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Genomic Research Laboratory, GRL; Geneva University Hospital, HUG


ncbi_isolation_source: commercial probiotic

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: TU Muenchen


ncbi_country: Slovenia

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Laboratory of Health, Environment and Food


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium


ncbi_country: Italy: Province of Bologna

ncbi_organism_name: Campylobacter vulpis

ncbi_submitter: C. vulpis


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Streptomyces sp. NPDC051994

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: INRA


ncbi_assembly_name: Rumen uncultured genome RUG735

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China:Hubei; Wuhan

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Hong Kong: Pokfulam

ncbi_isolation_source: Top soil and leaf litter

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_strain_identifiers: UCI 50

ncbi_submitter: USDA-ARS


ncbi_organism_name: Leifsonia shinshuensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Mexico: Laguna Figueroa; Baja California

ncbi_isolation_source: marine microbial mat

ncbi_organism_name: Rhizobium sp.

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces coeruleorubidus


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Thalassospira tepidiphila

ncbi_submitter: Plant Environmental Microbiology Group, Institute of Plant Science and Resources, Okayama University


ncbi_country: United Kingdom: London

ncbi_isolation_source: Plaque (caries -)

ncbi_organism_name: Actinomyces oris

ncbi_submitter: King's College London


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: [Clostridium] hylemonae

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Calothrix sp. MO_167.B12

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Haliscomenobacter hydrossis DSM 1100

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Jeotgalibacillus terrae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Sydney

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Zhejiang

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Lacrimispora indolis DSM 755

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lacrimispora;s__Lacrimispora indolis;x__Lacrimispora indolis DSM 755


ncbi_country: Ireland

ncbi_isolation_source: Placenta; aborted fetus

ncbi_organism_name: Arcobacter cryaerophilus gv. crypticus

ncbi_submitter: Universitat Rovira i Virgili


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Cameroon: Ebogo

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: GYNAcap

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_country: USA: GA

ncbi_isolation_source: stream

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_assembly_name: Rumen uncultured genome RUG13274

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: UCC isolate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Henan

ncbi_isolation_source: rhizosphere soil of peanut

ncbi_organism_name: Bacillus sp. XF8

ncbi_submitter: China University of Petroleum (East China)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. XF8


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Cornell University


ncbi_country: South Korea

ncbi_isolation_source: root

ncbi_organism_name: Burkholderia stabilis

ncbi_submitter: Yeungnam University


ncbi_isolation_source: lung

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Ares Genetics


ncbi_country: Spain: Barcelona

ncbi_isolation_source: sputum

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_assembly_name: freshwater MAG --- B4-5_bin-581

ncbi_isolation_source: pond

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Princeton University


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: North Carolina

ncbi_isolation_source: Abscess

ncbi_organism_name: Klebsiella pneumoniae CHS 48

ncbi_strain_identifiers: CHS 48

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 48


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Micromonospora arida

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg