ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-1559

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Pantoea sp. S18

ncbi_submitter: Anhui Polytechnic University


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: China: Wenzhou

ncbi_isolation_source: stool from neonate

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_assembly_level: Scaffold

ncbi_country: Portugal

ncbi_isolation_source: Mussels

ncbi_organism_name: Shewanella algae

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Betaproteobacteria bacterium UBA3119

ncbi_submitter: University of Queensland


gtdb_representative: t

ncbi_assembly_name: freshwater MAG --- Erken-D9_bin-0863

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: Lacticaseibacillus rhamnosus 2166


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Heilongjiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Canada: Guelph

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Antarctica: Robinson Ridge

ncbi_isolation_source: pooled data from three different soil samples

ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: nstitute of Tibetan Plateau Research, Chinese Academy of Sciences


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Fictibacillus halophilus

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: Indonesia: Randayan Island

ncbi_organism_name: Streptomyces sp. RS2

ncbi_submitter: Oregon State University


ncbi_country: USA: UCSD Medical Center; San Diego; California

ncbi_isolation_source: Urinary tract

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Stanford University


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Clostridiales bacterium


ncbi_country: USA: PA

ncbi_isolation_source: porcine pig intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: Brazil

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli Envira 10/1

ncbi_strain_identifiers: 1;Envira 10

ncbi_submitter: IGS


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: AATZF

ncbi_submitter: NHGRI/NIH


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: beetle eggs

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: Pseudomonas soli


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Loyola University Chicago


ncbi_country: Belgium: Wallonia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_organism_name: Escherichia sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Hospital Tuebingen


ncbi_country: USA: St. Luke s; Chesterfield; Missouri

ncbi_isolation_source: hip prothesis biopsy

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Mesorhizobium sp. M0090

ncbi_submitter: Washington State University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolate: SPRUCE 106

ncbi_organism_name: Terriglobales bacterium

ncbi_strain_identifiers: SPRUCE 106

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: South Africa: North-West

ncbi_isolation_source: root-soil zone

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: North West University, Mafikeng


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2735

ncbi_submitter: University of Queensland


ncbi_organism_name: Hydrogenophaga sp.


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil: Recife

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aggeu Magalhaes Institute


ncbi_country: USA:San Francisco

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: USA: WA

ncbi_organism_name: Bacillus sp. 220_BSPC

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 220_BSPC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Finnish Food Authority


ncbi_organism_name: Capnocytophaga canis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T83715

ncbi_submitter: Broad Institute


ncbi_country: Australia

ncbi_isolation_source: Feces

ncbi_organism_name: Bacteroidales bacterium M10

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M10


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Tang lab


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_country: Oman: Somail Ophiolite

ncbi_isolation_source: Aquifer water

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Marinovum sp.

ncbi_submitter: SCOPE


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of California at Davis


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. NPDC127117

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: Salinas; CA

ncbi_isolation_source: field

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Bacillus sp. B20(2022)

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. B20(2022)


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


gtdb_type_species_of_genus: t

ncbi_organism_name: Pseudocitrobacter faecalis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_organism_name: Shigella boydii

ncbi_strain_identifiers: NCTC 9733

ncbi_submitter: CDC


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Qinghai

ncbi_isolation_source: sediments

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Neomegalonema sp.

ncbi_submitter: EMG


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_isolation_source: chicken

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Thiobacillaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Beijing

ncbi_isolation_source: caecum mucosa from a healthy weaned piglet

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Institute of Animal Husbandry and Veterinary Medicine


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Corynebacterium sp. KPL4064

ncbi_submitter: Baylor College of Medicine


ncbi_submitter: University of Toronto Centre for the Analysis of Genome Evolution and Function

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae;x__Pseudomonas syringae pv. avellanae str. ISPaVe037


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Raineyella sp. LH-20


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Affiliated Hospital of Jining Medical University


ncbi_organism_name: Polycyclovorans sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Ningbo city

ncbi_isolation_source: sediment

ncbi_organism_name: Frigidibacter sp. SD6-1

ncbi_submitter: Ningbo University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Olsenella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Oligoflexia bacterium

ncbi_submitter: EMG


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mycoplasmopsis cynos

ncbi_submitter: University of Guelph


ncbi_organism_name: Xanthomonas sp. WCS2018Noco2-15

ncbi_submitter: Utrecht University


ncbi_isolate: VTEC

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__unclassified Pelagibacteraceae;s__Pelagibacteraceae bacterium BACL5 MAG-120705-bin12


ncbi_country: France

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolate: Nitrosomonas sp. RBC050

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Nitrosomonas sp.

ncbi_strain_identifiers: Nitrosomonas sp. RBC050

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: USA: Rhode Island

ncbi_isolate: D

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: D344RRF x C68;D

ncbi_submitter: brown University/Rhode Island Hospital


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Panama: Coiba National Park

ncbi_isolation_source: host-associated

ncbi_organism_name: Pseudoalteromonas sp. CO325X

ncbi_submitter: INDICASAT AIP


ncbi_organism_name: Micavibrio sp.

ncbi_submitter: Stockholm University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Oribacterium sinus F0268

ncbi_submitter: Baylor College of Medicine


ncbi_country: China: Yunnan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: CAU


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Microbacterium sp. Root166

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Canada: Vancouver

ncbi_isolation_source: maternal vaginal swab fluid of a 29 year-old woman on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_country: China: Shenzhen; Longgang

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_9


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human fecal sample

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: University of Chicago


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Academia Sinica


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Switzerland: Lake Zurich; 5 m depth

ncbi_organism_name: Candidatus Planktophila dulcis

ncbi_submitter: University of Zurich

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis


ncbi_country: Spain

ncbi_isolation_source: Medical

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Investigacion Sanitaria y Biomedica de Alicante


ncbi_country: Germany: Hannover

ncbi_isolation_source: CF airways

ncbi_organism_name: Pseudomonas aeruginosa TBCF10839

ncbi_submitter: Sustech Hospital


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Porphyromonas endodontalis


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: Canada: PEI

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: USA: CA

ncbi_isolation_source: egg (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW306-2-2C-A10BC

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Friedrich-Loeffler-Institut, Institute of Molecular Pathogenesis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Colombia: Antioquia; Bello

ncbi_isolation_source: bone

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Antioquia


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Guangdong;Guangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_assembly_name: freshwater MAG --- Erken-D6_bin-0260

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: BGI


ncbi_isolation_source: human gut

ncbi_organism_name: Lacticaseibacillus saniviri

ncbi_submitter: EMG


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Guizhou Academy of Science


ncbi_country: China: Kunming

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Hunan

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: JK

ncbi_submitter: University of Science and Technology Beijing

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: USA: California; Modesto

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Enterocloster sp.


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: Brazil: Belem

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_organism_name: Streptococcus hyointestinalis


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: SAR202 cluster bacterium bin16

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium bin16


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: USA

ncbi_isolation_source: spleen

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: Rhizobium sp. 768_B6_N1_8

ncbi_submitter: VIB


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaerotruncus;s__Anaerotruncus massiliensis (ex Liu et al. 2021)


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: National Academy of Agrarian Sciences of Ukraine


ncbi_organism_name: Treponema sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Microbacteriaceae bacterium


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: China: Jiangxi; Yongping

ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: France

ncbi_isolation_source: Finger abcess

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: China: South China Sea

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Liaoning University


ncbi_organism_name: Vibrio sp. Vb2917

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfurellales bacterium

ncbi_submitter: Portland State University


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Streptomyces sp. NPDC127072

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Klebsiella sp. JB_Kp030

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Taiwan

ncbi_isolation_source: bloodstream

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_assembly_name: Rumen uncultured genome RUG12601

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: China

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: EMG


ncbi_isolation_source: sputum

ncbi_submitter: University of Michigan


ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_submitter: IRHS


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: regolith

ncbi_organism_name: Pseudarthrobacter sp. NS4

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: China: Tengchong; Yunnan; ShuiReBaoZha

ncbi_isolation_source: hot springs sediment

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA: Chicago Lake Michigan

ncbi_isolation_source: lake water

ncbi_organism_name: Rhodoferax sp. UBA4409

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Salmonella sp. NW299

ncbi_submitter: Sichuan University


ncbi_organism_name: Curvibacter sp.

ncbi_submitter: Friedrich Schiller University Jena


ncbi_country: Germany

ncbi_isolation_source: human

ncbi_submitter: University clinic Muenster


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Universidad Austral de Chile


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Japan: Hokkaido; Tobetsu-cho

ncbi_organism_name: Veillonella sp. T34266-5

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: waste water

ncbi_organism_name: Acidovorax sp. YS12

ncbi_submitter: Central South University


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: B95. delta A

ncbi_submitter: RIKEN


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-07671

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-2809

ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: PA

ncbi_isolation_source: caecum domestic rabbit

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Bifidobacterium longum


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_organism_name: Neisseria lactamica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Enterococcus dongliensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Treponema sp.

ncbi_submitter: Washington State University


ncbi_isolation_source: Distal colon

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Logan River

ncbi_organism_name: Patescibacteria group bacterium UBA6489

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA6489


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Beijing

ncbi_organism_name: Blautia sp. NSJ-165

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Lubbock


ncbi_country: USA: CA

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Jiangsu

ncbi_isolation_source: rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Poland: Sosnowiec

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus sp. 714

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_assembly_name: IMG-taxon 2599185319 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC24-1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_country: Japan

ncbi_organism_name: bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Nitrospira sp.


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW460-E12

ncbi_submitter: Arkin Lab


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Gujarat Arts and Science College


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Rhodobiaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1391

ncbi_submitter: Broad Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Portugal

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Ligilactobacillus ruminis


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: PAIRED

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MASINDE MULIRO UNIVERSITY OF SCIENCE AND TECHNOLOGY


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Gemmobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Butyribacter intestini


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Louis Stokes Cleveland VAMC


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Campylobacter coli

ncbi_submitter: dtu national food institute


ncbi_country: USA

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Klebsiella sp. JB_Kp043

ncbi_submitter: Max Rubner-Institut


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA94

ncbi_submitter: Broad Institute


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Gemella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Allobacillus sp. GCM10007490

ncbi_strain_identifiers: PCU SKP4-8

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Malaysia

ncbi_isolation_source: Gastric Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_organism_name: Kandleria vitulina MC3001

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Caecum


ncbi_country: China: Jiangxi; Dexing

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: France

ncbi_isolation_source: water

ncbi_organism_name: Leptospira ognonensis

ncbi_refseq_category: reference genome

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-12951

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: United Kingdom: Herefordshire

ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: NIAB East Malling Research


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater


ncbi_organism_name: Nostocoides jenkinsii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Spirobacillus cienkowskii

ncbi_submitter: University of Basel


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium fessum

ncbi_submitter: Seoul National University


ncbi_organism_name: Streptomyces smyrnaeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Mexico

ncbi_isolation_source: Lerma River

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: Nasopharyngeal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chaska; MN

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Xanthomonas sp. NCPPB 2586

ncbi_strain_identifiers: NCPPB 2586

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Klebsiella pneumoniae subsp. ozaenae

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. ozaenae


ncbi_assembly_name: freshwater MAG --- AM_bin-1676

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-0539

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA

ncbi_organism_name: Rhodoblastus acidophilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA:New York;Manhattan

ncbi_isolation_source: Xenic protist cell culture

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: American Museum of Natural History


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Salmonella enterica CVM N41909-SQ v1.0

ncbi_country: USA: CT

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Fibrobacter sp. UBA3629

ncbi_submitter: University of Queensland


ncbi_submitter: Monash University


ncbi_country: China

ncbi_isolation_source: Ear canal secretions

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Xanthomonas campestris pv. campestris


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Spain: Bilbao

ncbi_isolation_source: respiratory tract infection

ncbi_submitter: AstraZeneca


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: nasopharynx


ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Halomonas stenophila

ncbi_strain_identifiers: CECT 7744


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinhua Central Hospital


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Dyadobacter pollutisoli

ncbi_submitter: Chung-Ang university


ncbi_country: Russia: Chelyabinsk

ncbi_isolation_source: patient

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Research Institute for Plague Control


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Aquimarina sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Paraburkholderia sp. BR10882

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: Bacillus paralicheniformis ATCC 9945a

ncbi_strain_identifiers: ATCC 9945a

ncbi_submitter: Georg-August-University Goettingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus paralicheniformis;x__Bacillus paralicheniformis ATCC 9945a


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Fort Bragg; North Carolina

ncbi_isolation_source: Human blood via yolk sac

ncbi_organism_name: Legionella micdadei

ncbi_strain_identifiers: TATLOCK

ncbi_submitter: Tel Aviv University


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment

ncbi_organism_name: Sutcliffiella horikoshii

ncbi_submitter: Cinvestav


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Guangzhou Institutes of Biomedicine and Health , Chinese Academy of Sciences (CAS)


ncbi_country: Tasman Sea

ncbi_isolation_source: Sea water

ncbi_organism_name: Synechococcus sp. MU1625

ncbi_submitter: Macquarie University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 328

ncbi_submitter: SC


ncbi_country: Denmark: Hovedstaden;Copenhagen

ncbi_isolation_source: Proficiency Panel Isolate

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: South Korea: Iksan

ncbi_isolation_source: Pond

ncbi_organism_name: Pelomonas sp. BJYL3

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: Poland: Gdynia

ncbi_isolation_source: rhizosphere of tomato plant

ncbi_organism_name: Pseudomonas donghuensis

ncbi_submitter: Intercollegiate Faculty of Biotechnology UG&MUG


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Heidelberg University Hospital


ncbi_country: China: Jieyang

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 16E136

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_assembly_name: Rumen uncultured genome RUG14481

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Knoellia sp. GCM10027209

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Beduini sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptomyces sp. Tue6028

ncbi_submitter: BGI Research


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Vibrio chagasii

ncbi_submitter: Tel Aviv University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Kineococcus sp. SYSU DK001

ncbi_strain_identifiers: SYSU DK001

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp2 AA99

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp2 AA99

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SBM Research Institute of Rospotrebnadzor


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University


ncbi_isolation_source: Kefir

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Cameroon

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: California

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia albertii

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Taiwan

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Food Industry Research and Development Institute


ncbi_country: Bangladesh

ncbi_isolation_source: gut of rohu

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Ningbo

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo First Hospital


ncbi_isolation_source: sputum

ncbi_submitter: University of Trento


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: USA

ncbi_isolation_source: food processing facility

ncbi_organism_name: Flavobacteriaceae bacterium PS02334

ncbi_submitter: Penn State University


ncbi_organism_name: Phytohabitans suffuscus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Nitratireductor aquimarinus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Singapore

ncbi_isolation_source: Coastal Water

ncbi_submitter: National University of Singapore


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: Brazil

ncbi_isolation_source: BALavage

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: Boston

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Brigham & Women's Hospital


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-422-C23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhodopseudomonas palustris BisB5

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Dysosmobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Gaiellaceae bacterium


ncbi_organism_name: Streptococcus sp. oral taxon 431

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__unclassified Streptococcus;s__Streptococcus sp. oral taxon 431


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_01_FULL_53_31


ncbi_country: China: Weifang

ncbi_isolation_source: chicken manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: University College London (UCL)


ncbi_organism_name: Enterococcus faecium D344SRF

ncbi_submitter: Broad Institute


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: shannxi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Weissella confusa

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: cold seep

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolate: MED

ncbi_isolation_source: marine water sample

ncbi_organism_name: Magnetovibrio sp.

ncbi_strain_identifiers: MED

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: EMG


ncbi_organism_name: Turicibacter sp.

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Sweden

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: China: Guangzhou

ncbi_isolation_source: ascites

ncbi_organism_name: Campylobacter fetus

ncbi_submitter: Guangzhou University of Chinese Medicine


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: USA: Texas

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Northern Arizona University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Anaerosolibacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antwerp


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_organism_name: uncultured Helicobacteraceae bacterium


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Komeilibacteria bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Komeiliibacteriota;x__unclassified Candidatus Komeilibacteria;s__Candidatus Komeilibacteria bacterium


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD17613

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: Australia: WA; Canna

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. CA17

ncbi_submitter: Curtin University


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Malaysia Sabah


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Planktomarina temperata

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Allomuricauda sp. R78024

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_organism_name: Lactiplantibacillus argentoratensis

ncbi_submitter: Jiangnan University


ncbi_organism_name: Candidatus Poriferisodalaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Synechococcales cyanobacterium

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Alistipes avistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: Eggerthella lenta


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Staphylococcus aureus F23585

ncbi_submitter: Broad Institute


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: sichuan university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Curtobacterium sp. PhB136

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacillus anthracis str. Kruger B

ncbi_strain_identifiers: Kruger B

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. Kruger B


ncbi_organism_name: Brucella abortus bv. 1 str. NI488

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus bv. 1;x__Brucella abortus bv. 1 str. NI488


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 72 year old woman who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_isolation_source: food production metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Campylobacter vicugnae

ncbi_submitter: Chinese Center for Disease Control and Prevention

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Aquimarina algiphila

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human skin

ncbi_organism_name: Trueperella bernardiae

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_country: United Kingdom: England

ncbi_isolation_source: Urine (FREE)

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_country: Germany

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Cameroon: Northern Cameroon

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Cytophagaceae bacterium


ncbi_country: China

ncbi_organism_name: Bacillus paralicheniformis


ncbi_country: Chile: Santiago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Gut Microbiota and Clostridia Research Group


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: Bangladesh: Savar

ncbi_isolation_source: Droppings

ncbi_organism_name: Escherichia fergusonii

ncbi_strain_identifiers: OTSVEF 60

ncbi_submitter: University of Dhaka


ncbi_organism_name: Psychrobacter sp. WY6

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: not available: to be reported later

ncbi_submitter: SC


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: University of Wroclaw


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Desulfarculus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Switzerland

ncbi_isolation_source: Deep Tissue

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_isolate: Enterobacter cancerogenus ATCC33241

ncbi_organism_name: Enterobacter cancerogenus

ncbi_strain_identifiers: Enterobacter cancerogenus ATCC33241

ncbi_submitter: JUSTUS LIEBIG UNIVERSITY


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis


ncbi_country: Finland

ncbi_isolation_source: baking flour

ncbi_organism_name: Weissella confusa

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Streptomyces roseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: WI

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Jiangxi

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faecal

ncbi_organism_name: Shigella flexneri

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Ludwik Rydygier Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Torun


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_assembly_name: 777SA01 assembly

ncbi_isolation_source: Animal

ncbi_submitter: inrae nouzilly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Paenibacillus cookii

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_organism_name: uncultured Halieaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: lichen metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: SC

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Leclercia pneumoniae

ncbi_submitter: USDA-ARS


ncbi_country: USA: Los Angeles

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus sp. HMSC076C09

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: Jet Propulsion Laboratory


ncbi_assembly_name: Burkholderia seminalis LMG 24067

ncbi_isolation_source: Clinical; cystic fibrosis patient

ncbi_organism_name: Burkholderia seminalis DSM 23518

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;x__Burkholderia cepacia complex;s__Burkholderia seminalis;x__Burkholderia seminalis DSM 23518


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Pseudoclavibacter sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Clostridium sulfidigenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Michigan


ncbi_country: Thailand: Phatthalung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: USDA ARS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium sp. NLR8a

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Nitratireductor sp.


ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: MD

ncbi_isolation_source: surface

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Nonomuraea rubra

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Thermomicrobium sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Fictibacillus sp. NPDC058756

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Amphritea sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Sneathiella chungangensis

ncbi_strain_identifiers: CECT 8513


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Candidatus Amulumruptor sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Candidatus Amulumruptor;x__unclassified Candidatus Amulumruptor;s__Candidatus Amulumruptor sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia sp. AU30198

ncbi_submitter: University of Michigan


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Paenibacillus sp. FSL L8-0663

ncbi_submitter: Penn State


ncbi_country: USA: Yale West Campus; Orange; Connecticut

ncbi_isolate: ENCA

ncbi_organism_name: Arsenophonus sp. ENCA

ncbi_strain_identifiers: ENCA

ncbi_submitter: University of Hawaii


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: sputum of patients with cystic fibrosis

ncbi_organism_name: Herbaspirillum seropedicae

ncbi_submitter: INCT of Biological Nitrogen Fixation


ncbi_assembly_name: Rumen uncultured genome RUG13197

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_assembly_name: Rumen uncultured genome RUG12999


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Pantoea sp. sgz302252

ncbi_submitter: fujian agriculture and forest university


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Thailand

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Ann Arbor; MI

ncbi_organism_name: Enterococcus faecalis EnGen0285

ncbi_submitter: Broad Institute


ncbi_isolation_source: rat gut

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: University of Queensland


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4571_4 depth 0-3 cm

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Parvimonas sp. C2

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: EBI


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Austria:Lower Austria; Baernkopf

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Protochlamydia amoebophila

ncbi_submitter: University of Vienna


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Arenicella sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptococcus pyogenes ABC020058759


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Acetobacter cerevisiae DSM 14362

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: China: Shenzhen

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: BGI


ncbi_organism_name: uncultured Alteromonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: VA

ncbi_isolation_source: creek water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Washington


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: MIT


ncbi_country: Spain: Santa pola

ncbi_isolation_source: banquettes

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Alicante


ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Woodland Clinic

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_country: Egypt

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: USUHS


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_assembly_name: freshwater MAG --- AlinenSediments_bin-3342

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Caldisericota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__environmental samples;s__uncultured Caldisericota bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Tunisia

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Waterloo


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium leprae 3125609

ncbi_submitter: Eurofins Genomics India Pvt Ltd.


ncbi_organism_name: Pirellula sp.

ncbi_submitter: EPFL


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EBI


ncbi_organism_name: Enterococcus thailandicus

ncbi_strain_identifiers: TISTR 933

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: cold seep

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: University of Wuerzburg


ncbi_country: USA: MS

ncbi_isolation_source: Toe wound

ncbi_organism_name: Staphylococcus aureus DAR3632

ncbi_submitter: Broad Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alphaproteobacteria bacterium UBA1485

ncbi_submitter: University of Queensland


ncbi_country: USA: Cleveland

ncbi_isolation_source: urine

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Acidimicrobiia bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Mangrovibacterium marinum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_isolation_source: biofilm from carbon steel corrosion coupon exposed to oil field production water

ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: ExxonMobil Upstream Research Company


ncbi_country: Brazil:Minas Gerais; Belo Horizonte

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Ningde

ncbi_isolation_source: tuber

ncbi_organism_name: Pectobacterium punjabense

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Northwestern University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC