ncbi_assembly_name: Rumen uncultured genome RUG14534

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_level: Scaffold

ncbi_organism_name: Chlamydia psittaci 10_743_SC13

ncbi_submitter: IGS


gtdb_representative: t

ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Streptomyces sp. NPDC058247

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: Zha-chili (fermented food made of chili and corn flour or rice flour)

ncbi_organism_name: Lactobacillus sp. HBUAS51381

ncbi_submitter: Hubei University of Arts and Science


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: South Korea: Seoul

ncbi_isolation_source: hospital

ncbi_submitter: Seoul Metropolitan Government Research Institute of Public Health and Environment


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Municipal Center for Disease Control & Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Sphingomonas sp. Leaf30

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Netherlands

ncbi_isolation_source: feces

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Aberdeen


ncbi_country: USA: Athens County; Ohio

ncbi_isolation_source: groundwater well

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium Athens0714_26


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_level: Chromosome

ncbi_submitter: UTsouthwestern Medical Center


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Glutamicibacter sp. AOP38-B1-38

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Teagasc


ncbi_organism_name: Bradyrhizobium sp. HKCCYLS1011

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14739

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Animal - Chicken broiler growers

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20094352


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Rossellomorea aquimaris

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Serbia

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Italy: Apulia; Bari

ncbi_submitter: University of Bari "Aldo Moro", Bari, Italy


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Campylobacter curvus

ncbi_submitter: US Food and Drug Administration

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptococcus intermedius B196

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus intermedius;x__Streptococcus intermedius B196


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Australia: Cummings Reserve; Port Phillip Bay site B intermediate

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_country: Czech Republic

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wroclaw


ncbi_country: China: Yellow Sea

ncbi_isolation_source: marine snow particles in surface water

ncbi_organism_name: Leeuwenhoekiella sp. ZYFB001

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: University of Chicago


ncbi_organism_name: Candidatus Saccharimonas aalborgensis

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__Candidatus Saccharimonas aalborgensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__Candidatus Saccharimonas aalborgensis


ncbi_country: USA: Florida;Rock Key

ncbi_isolation_source: marine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Flavobacterium sp. GT3R68

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Shantou; Guangodng

ncbi_isolation_source: air in sports field

ncbi_organism_name: Microcella alkalica

ncbi_submitter: Southern Medical University


ncbi_country: Australia

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Anaerostipes hadrus


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Clostridium sulfidigenes


ncbi_country: China: Shandong; Zhucheng

ncbi_isolation_source: river water

ncbi_submitter: Shandong university


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: NIVIP


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_refseq_category: reference genome

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Idaea biselata


ncbi_assembly_name: Rumen uncultured genome RUG14129

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Malaysia: Segamat

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Monash University Malaysia


gtdb_type_species_of_genus: t

ncbi_organism_name: Brucella melitensis bv. 1 str. 16M

ncbi_submitter: Integrated Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella melitensis;x__Brucella melitensis bv. 1;x__Brucella melitensis bv. 1 str. 16M


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China:Tianjin;Affiliated Hospital of Nankai University

ncbi_isolation_source: burn wound

ncbi_submitter: Nankai University


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China:Guangdong Province

ncbi_isolation_source: forest soil

ncbi_organism_name: Paraburkholderia acidiphila

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA

ncbi_isolation_source: throat

ncbi_organism_name: Ochrobactrum sp. LMG 5442

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: Brazil:Santa Catarina; Florianopolis

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Ferruginibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Carson; CA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Intestinicryptomonas porci

ncbi_submitter: RWTH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: saline soil

ncbi_organism_name: Alcaligenaceae bacterium SJ-26

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_submitter: Massachusetts Eye and Ear


ncbi_country: Canada: Red Deer

ncbi_organism_name: Microbacterium sp. RD02

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (64 uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_organism_name: Dyella sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Micromonospora vinacea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Australia: Brisbane

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Xylanibacter rodentium


ncbi_country: USA: Maryland

ncbi_isolation_source: blood

ncbi_submitter: University of Toronto


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_country: USA: California

ncbi_isolation_source: crown gall

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: USDA-ARS


ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aureofaciens


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hospital Infantil de Mexico Federico Gomez


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of California Davis


ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lunds Universitet


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada: Nunavut; Northern Canada; Alexandra Fiord

ncbi_isolate: AFD bin50

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: AFD bin50

ncbi_submitter: Monash University


ncbi_organism_name: Mycoplasma sp. VS292A

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Canada: Guelph

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis cynos

ncbi_submitter: University of Guelph


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIFESP


ncbi_isolation_source: panda

ncbi_submitter: microbial pathogenic ecology group


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: ANIWHA


ncbi_organism_name: uncultured Parvibacter sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio cholerae O139

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: China

ncbi_isolation_source: animal feces

ncbi_organism_name: Nocardioides dongkuii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA

ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MD

ncbi_isolation_source: eye shadow

ncbi_organism_name: Bacillus cereus

ncbi_submitter: FDA


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_organism_name: Providencia stuartii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: South Korea: yeongju

ncbi_isolation_source: ginseng field soil

ncbi_organism_name: Nocardioides panacis

ncbi_submitter: Hankyong National University


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Nonlabens sp.

ncbi_submitter: Clemson University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Hungatella sp. UBA5787

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierella sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Gungdong

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: Spain: Sevilla

ncbi_submitter: CHU A Coruna


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ruijin Hospital


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Neobacillus drentensis

ncbi_submitter: Auburn University


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_assembly_name: Rumen uncultured genome RUG13405

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Middle meatus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_country: USA: Jefferson

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NCTR/FDA


ncbi_country: Australia: New South Wales

ncbi_submitter: Curtin University


ncbi_country: France

ncbi_strain_identifiers: CFBP 1124

ncbi_submitter: CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CFBP 1124


ncbi_country: South Korea

ncbi_organism_name: Parabacteroides sp. CT06

ncbi_submitter: Kyung Hee University


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Neglectibacter timonensis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: France: Calvados; Normandie

ncbi_isolation_source: cheese

ncbi_organism_name: Leucobacter sp. UCMA 4100

ncbi_strain_identifiers: UCMA 4100

ncbi_submitter: Equipe MALIM Matrices ALImentaires et Microbiotes


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India: Hyderabad

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: University of Hyderabad


ncbi_country: China: Yunnan

ncbi_isolation_source: stool

ncbi_submitter: China CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Fulica


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA7728

ncbi_submitter: University of Queensland


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany


ncbi_organism_name: Bacillus sp. YIM B13608

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13608


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: sponge

ncbi_organism_name: Crateriforma spongiae

ncbi_submitter: JNTUH


ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Tongji University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Acutalibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: swine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 1 day

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Shantou University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: burned soil

ncbi_organism_name: Francisellaceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B025;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Oklahoma

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13317

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_submitter: KEMRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: South Korea: Busan

ncbi_isolation_source: blood from new born child with sepsis

ncbi_organism_name: Metabacillus idriensis

ncbi_submitter: Lycoming College


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. KLMMK

ncbi_strain_identifiers: KLMMK

ncbi_submitter: Illinois Wesleyan University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Paraburkholderia sp. RL17-368-BIF-A

ncbi_submitter: University of Illinois at Chicago


ncbi_submitter: McMaster University


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces niveus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Microbispora sp. CA-102843


ncbi_submitter: Oregon State University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Pseudoduganella sp. R-31

ncbi_submitter: Iowa State University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sphingomonas oligoaromativorans

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: uncultured Sulfuritalea sp.


ncbi_organism_name: Micromonospora zhanjiangensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Enterococcus sp. DIV0421

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Breoghania sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_country: USA: California; Calistoga

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: Japan

ncbi_organism_name: Streptobacillus moniliformis

ncbi_submitter: Robert Koch Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium RIFCSPHIGHO2_02_FULL_52_58


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: France: La Reunion Island

ncbi_submitter: IRHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. phaseoli var. fuscans


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Environmental Microbiology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Staphylococcus warneri


ncbi_organism_name: Negativibacillus massiliensis

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;s__Negativibacillus massiliensis


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Corynebacterium sp.


ncbi_country: USA: Lake; FL

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Hanamia sp.

ncbi_submitter: Zhejiang University


ncbi_country: South Korea: Jeollabuk-do

ncbi_organism_name: Flectobacillus roseus

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA

ncbi_isolation_source: nasopharyngeal

ncbi_submitter: Harvard University


ncbi_organism_name: Xanthobacteraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Syntrophus sp. (in: bacteria)

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Syntrophia;o__Syntrophales;f__Syntrophaceae;g__Syntrophus;x__unclassified Syntrophus (in: bacteria);s__Syntrophus sp. (in: bacteria)


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F12874

ncbi_submitter: Broad Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Bifidobacterium merycicum

ncbi_submitter: EMG


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_organism_name: Azospirillum argentinense

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Minesota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: India: Soil; Andhra Pradesh State

ncbi_organism_name: [Actinomadura] parvosata subsp. kistnae

ncbi_submitter: Behnam Nazari


ncbi_organism_name: Blautia wexlerae DSM 19850

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia wexlerae;x__Blautia wexlerae DSM 19850


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: cecal contents

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nocardia salmonicida

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Henan

ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: Kazakhstan: Almaty

ncbi_isolation_source: oropharyngeal swasb of pharynx

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: SCAID PHRX1-2019

ncbi_submitter: Scientific Center for Anti-infectious Drugs (SCAID)


ncbi_country: Italy: Lodi

ncbi_isolation_source: water

ncbi_submitter: Charles University in Prague


ncbi_submitter: Proteon Pharmaceuticals


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Prochlorococcus sp. MIT 0604

ncbi_submitter: MIT


ncbi_country: Italy: Bologna

ncbi_organism_name: Legionella sp. 27cVA30

ncbi_submitter: University of Bologna


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Australia

ncbi_organism_name: Burkholderia sp. MSMB175

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium CAG:364

ncbi_submitter: DTU


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Chakrabartia sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Liverpool


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE142

ncbi_submitter: Broad Institute


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Psychrobacter;s__Psychrobacter phenylpyruvicus;x__Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152


ncbi_organism_name: Pseudomonas sp. 905_Psudmo1

ncbi_submitter: South China Normal University


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Farm environmental

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_assembly_name: cohnii

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus UCIM6019


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Dominican Republic

ncbi_isolation_source: plant and soil inclusions

ncbi_organism_name: Staphylococcus succinus subsp. succinus

ncbi_submitter: Jiamusi University


ncbi_isolation_source: acidic hot spring

ncbi_organism_name: Alicyclobacillus sp. TC

ncbi_strain_identifiers: TC

ncbi_submitter: Central South University


ncbi_organism_name: Dialister sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Spirillospora sp. CA-108201

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Candidatus Onthousia sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Onthousia;x__unclassified Candidatus Onthousia;s__Candidatus Onthousia sp.


ncbi_organism_name: Helcococcus ovis

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Lacrimispora sp. AGF001

ncbi_submitter: Oklahoma State University


ncbi_submitter: Kansas State University


ncbi_organism_name: Nocardioides sp. R1-1

ncbi_submitter: Xinjiang Normal University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Streptomyces anandii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Achromobacter xylosoxidans


ncbi_country: Thailand: Phitsanulok

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kasetsart University


ncbi_assembly_name: freshwater MAG --- Loc090519-5m_bin-0379

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_submitter: Shandong University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: EMG


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Turkey: Istanbul

ncbi_isolation_source: Mucilage in the Sea of Marmara

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Bursa Uludag University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Jiangsu

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Italy

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Micavibrio sp.


ncbi_organism_name: Ectopseudomonas mendocina

ncbi_submitter: Universidad Tecnologica Metropolitana (UTEM)


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Prochloraceae cyanobacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE126

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Acetobacter tropicalis

ncbi_submitter: Brigham Young University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Edinburgh


ncbi_assembly_name: De novo assembly of KCRI isolate R0004_131E

ncbi_isolation_source: wound swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Australia


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pacific Ocean: single cell amplified by WGA-X; Juan De Fuca ridge

ncbi_genome_category: derived from single cell

ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: Neobacillus drentensis

ncbi_submitter: Auburn University


ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteriota bacterium SKYGB_h_bin112


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: clinical material

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark: Jytland

ncbi_isolation_source: Vagina

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Aarhus University


ncbi_country: South Korea

ncbi_isolation_source: Chicken meat

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Enterobacter sp. GD03975

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Russia: Sochi

ncbi_isolation_source: hot water systems

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Russian Research Anti-Plague Institute Microbe


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden

ncbi_isolation_source: Abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Germany

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: China: Zhejiang

ncbi_isolation_source: China: The First Affiliated Hospital of Zhejiang University

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: State Key Laboratory for Diagnosis and Treatment of Infectious Disease


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Denmark

ncbi_isolation_source: zooplankton aquaculture

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: uncultured Janibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Qinghai Province

ncbi_isolation_source: trachea

ncbi_organism_name: Nocardioides sp. zg-1308

ncbi_submitter: China CDC


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_country: China: Chongqing

ncbi_isolation_source: Mulberry stem

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Southwest University


ncbi_country: United Kingdom: Saltwell Park; Gateshead

ncbi_isolation_source: root nodules

ncbi_organism_name: Streptomyces sp. RTGN2

ncbi_submitter: Newcastle University


ncbi_country: China: Henan

ncbi_submitter: China Agricultural University


ncbi_country: Germany: Freising

ncbi_isolation_source: feces

ncbi_organism_name: Peptostreptococcus porci

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_submitter: Nizam College, Osmania University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Switzerland

ncbi_isolation_source: plant tissue

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Sorbonne University


ncbi_country: New Zealand: Capital and Coast

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: uncultured Spongiivirga sp.

ncbi_submitter: EMG


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter sp. YH12040

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG10423

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Brevinematales bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Nanjing Agriculture University


ncbi_country: United Kingdom

ncbi_isolation_source: Chemostat

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: King's College London


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Qipengyuania sp.


ncbi_submitter: Yangzhou University


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Henan University of Technology


ncbi_organism_name: Alistipes putredinis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nantong Center for Disease Control and Prevention


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5486

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5486


ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Rhodobacter sp.


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0281

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: permafrost active layer soil

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Proteus terrae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Australia: Sydney

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Western Sydney University


ncbi_organism_name: Microbispora bryophytorum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Nannocystis exedens

ncbi_strain_identifiers: DSM 71

ncbi_submitter: Max-Planck Institute for terrestrial Microbiology


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Butyricimonas faecihominis

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: NY

ncbi_isolation_source: persistent mastitis

ncbi_organism_name: Escherichia coli ECC-1470

ncbi_submitter: Cornell University


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Menzies School of Health Research


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_assembly_name: Rumen uncultured genome RUG14855

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium flavescens

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Affiliated Shenzhen Sixth Hospital of Guangdong Medical University


ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Dorea longicatena

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_isolation_source: Oral cavity; infant (2 months of age)

ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: State University of Campinas


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Micrococcaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Blautia sp.

ncbi_submitter: AAFC


ncbi_isolation_source: screen

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Yangzhou University


ncbi_organism_name: Synechococcus sp. MIT S9503

ncbi_strain_identifiers: MIT S9503

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Faecalimonas umbilicata

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: India

ncbi_isolation_source: Rice seed

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Mexico: Morelos

ncbi_isolation_source: Venom glands

ncbi_organism_name: Mycoplasma sp. SG1

ncbi_submitter: Centro de Ciencias Genomicas, UNAM


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Corvallis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: Tissue Culture

ncbi_submitter: Charles University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: USA: Alachua; FL

ncbi_submitter: University of Florida


ncbi_assembly_name: Rumen uncultured genome RUG10597

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic lake sediment

ncbi_organism_name: Lacunisphaera sp.

ncbi_submitter: Universidad de la Republica


ncbi_organism_name: Chryseobacterium cucumeris

ncbi_submitter: University of Technology Sydney


ncbi_assembly_name: IMG-taxon 2599185150 annotated assembly

ncbi_organism_name: Saccharopolyspora flava

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: kidney

ncbi_organism_name: Francisella orientalis

ncbi_submitter: Aquacen - National Reference Laboratory for Aquatic Animal Diseases, Brazilian Ministry of Fisheries and Aquaculture and Laboratory of Cellular and Molecular Genetics, Federal University of Minas Gerais


ncbi_organism_name: Oribacterium sp.


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: biofilm

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;s__Candidatus Shapirobacteria bacterium UBA2283


ncbi_country: USA: Iowa

ncbi_organism_name: Escherichia coli

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_organism_name: Paracoccus tegillarcae

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: cecal contents

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Guangdong

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Avoscillospira;s__Candidatus Avoscillospira stercorigallinarum


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Australia: Five Islands

ncbi_submitter: OUTBREAK


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Bacteriovoracaceae bacterium UBA6935


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AM49-10BH

ncbi_submitter: BGI


ncbi_country: USA: MN

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Rhabdochlamydiaceae bacterium


ncbi_isolation_source: gut of vertebrate mammal

ncbi_organism_name: Phocaeicola barnesiae

ncbi_submitter: University of Queensland


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Geobacteraceae bacterium


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Netherlands

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: USA: California

ncbi_isolation_source: cow s milk

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: California 33 RSA329

ncbi_submitter: National Institutes of Health


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China

ncbi_isolation_source: Respiratory Medicine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Guangzhou Medical University


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab cheek

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Eawag


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Cellulomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Microcoleaceae cyanobacterium


ncbi_isolate: SPRUCE 84

ncbi_organism_name: Terriglobales bacterium

ncbi_strain_identifiers: SPRUCE 84

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Scardovia wiggsiae

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute, Germany


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Uruguay: Juanico; Canelones

ncbi_isolation_source: coassembly of multiple sorted single cells amplified by MDA; winery waste water sample

ncbi_organism_name: Anaerolineae bacterium clx_CAG2

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: Halomonas sp. H10-9-1

ncbi_submitter: Ocean University of China


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Sulfopaludibacter sp. SbA3

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Sulfopaludibacter;x__unclassified Candidatus Sulfopaludibacter;s__Candidatus Sulfopaludibacter sp. SbA3


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_organism_name: Rhizomicrobium sp.


ncbi_country: Ethiopia: Amhara; North Gondar

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Saudi Arabia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-00600

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Utah


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__candidate division WS6 bacterium GW2011_GWF2_39_15


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Texas Tech University


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Clostridium sp.


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Quebec

ncbi_organism_name: Aerococcaceae bacterium NML190073

ncbi_submitter: National Microbiology Laboratory, Public Health Agency of Canada


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: China: Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Washington University School of Medicine


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0001

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_country: Mexico: San Luis Potosi

ncbi_isolation_source: Slaughterhouse

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Centro de Ciencias Genomicas - UNAM


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Netherlands

ncbi_isolation_source: beet pulp; sugar refinery

ncbi_organism_name: Clostridium thermosuccinogenes

ncbi_submitter: Corbion


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar 48:g,z51:-


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Chryseobacterium timonianum

ncbi_submitter: URMITE


ncbi_assembly_name: Rumen uncultured genome RUG13148

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Agricultural Research Council-API


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Alteromonadales bacterium

ncbi_submitter: Tang lab


ncbi_country: Antarctica: King George Island; Barton Peninsula

ncbi_isolation_source: lichen

ncbi_organism_name: Glacieibacterium megasporae

ncbi_submitter: Korea Polar Research institute


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Mesorhizobium sp. M0771

ncbi_submitter: Washington State University


ncbi_assembly_name: Syntrophaceticus schinkii

ncbi_organism_name: Syntrophaceticus schinkii

ncbi_submitter: SLU-GBC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Thermoanaerobacterales Family III. Incertae Sedis;g__Syntrophaceticus;s__Syntrophaceticus schinkii


ncbi_country: Spain

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University of Parma


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Romania: Bucharest

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_country: United Kingdom: London

ncbi_isolation_source: Perineum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-2093

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Sinorhizobium sp. KGO-5

ncbi_submitter: Chiba University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Synechococcus elongatus IITB6

ncbi_submitter: Indian Institute of Technology Bombay


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus oralis SK1074

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Tennessee; Oak Ridge Reservation (ORR)

ncbi_isolation_source: Contaminated soil sample CPT56DS-C from Oak Ridge Reservation Area 3

ncbi_organism_name: Bacillus cereus

ncbi_submitter: ENIGMA


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: China

ncbi_isolation_source: public transports

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-294

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_strain_identifiers: new MAG-294

ncbi_submitter: Micoorganism

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_assembly_name: acinetobacter baumannii isolate  strainC

ncbi_isolation_source: tracheal secretion

ncbi_strain_identifiers: C

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE58

ncbi_submitter: Broad Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_organism_name: Lactococcus muris

ncbi_submitter: Institute of Process Engineering, Chinese Academy of Sciences


ncbi_country: India: Tiruvallur

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis H2375


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: ncipd


ncbi_organism_name: Escherichia coli DEC14A

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Blood


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_country: Australia: South Australia

ncbi_isolation_source: swab

ncbi_submitter: The University of Queensland


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: secretion

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_country: Hungary

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus group sp. N12

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. N12


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Promicromonospora alba

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oleispira sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Streptomyces rubiginosohelvolus


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_Z_1

ncbi_organism_name: uncultured Stigonema sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Arthrobacter sp. SLBN-112

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea:Gyeonggi-do

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Yonsei University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Sutterella sp.

ncbi_submitter: AAFC


ncbi_organism_name: Pseudanabaenales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Jilin

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Chiayiivirga sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium RIFCSPLOWO2_01_FULL_48_18


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Germany

ncbi_isolation_source: Abscess swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_country: USA: Georgia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycolicibacillus trivialis

ncbi_submitter: University of Trento


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: stool

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Massachusetts

ncbi_isolation_source: dental plaque

ncbi_organism_name: candidate division SR1 bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;x__unclassified Candidatus Absconditabacteria;s__candidate division SR1 bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Epilithonimonas vandammei

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: China

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: China: city moat; Xi an

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Candidatus Magnetominusculus xianensis

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: South Africa:Cape Town

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Sweden

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Orebro University Hospital