ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_organism_name: Candidatus Cryptobacteroides merdavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides merdavium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_organism_name: Klebsiella sp. PB8

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Salmonella sp. C3213

ncbi_submitter: Sichuan University


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDQ20D69P

ncbi_submitter: South China Agricultural University


gtdb_representative: t

ncbi_isolation_source: ballast tank

ncbi_organism_name: Bacteriovoracales bacterium

ncbi_submitter: Shandong university


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_country: Thailand

ncbi_isolation_source: Seed

ncbi_organism_name: Gluconobacter wancherniae

ncbi_submitter: Ghent University

ncbi_type_material_designation: assembly from type material


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Limimorpha caballi

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;s__Candidatus Limimorpha caballi


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Streptomyces sp. NPDC058202

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: uncultured Treponemataceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bradyrhizobium oligotrophicum

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium


ncbi_assembly_name: freshwater MAG --- AM_bin-2637

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Streptomyces sp. NPDC051546


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium GW2011_GWF2_38_29


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany

ncbi_isolation_source: throat swab

ncbi_submitter: SurvCARE


ncbi_assembly_level: Chromosome

ncbi_country: Thailand: Chiang Mai

ncbi_isolation_source: food

ncbi_organism_name: Enterococcus thailandicus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Greece

ncbi_isolation_source: soil

ncbi_organism_name: Achromobacter mucicolens

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Aarhus University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Lysinibacillus sp. LZ02

ncbi_submitter: Xiamen university


ncbi_country: USA: Woods Hole; MA

ncbi_isolation_source: ocean water

ncbi_organism_name: Streptomyces sp. NRRL B-24484

ncbi_submitter: University of Illinois


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces of wildtype C57BL/6 mice

ncbi_organism_name: Paramuribaculum intestinale

ncbi_refseq_category: reference genome

ncbi_submitter: Temasek Life Sciences Laboratory


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: activated sludge

ncbi_organism_name: Diaphorobacter sp. C33

ncbi_submitter: Chungbuk National University


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Enterobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of British Columbia


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Thermoanaerobacteraceae bacterium

ncbi_submitter: The Ohio State University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: Boston

ncbi_isolation_source: IBD Biopsy

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Broad Institute


ncbi_country: Portugal

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidade Catolica Portuguesa


ncbi_country: China: Qinghai

ncbi_isolation_source: sediments

ncbi_organism_name: Desulfamplus sp.

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA

ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Dialister invisus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: Fermented Rice

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Agro-industry, Prince of Songkla University, wageningen university


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Madagascar

ncbi_organism_name: Klebsiella sp. 01-3681

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Rhizobium sp. CFBP 13717

ncbi_submitter: INRAE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriales bacterium UBA4471

ncbi_submitter: University of Queensland


ncbi_country: Malaysia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira yasudae

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu

ncbi_isolation_source: sewage

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Antarctica

ncbi_organism_name: Brevundimonas sp. PAMC22021

ncbi_submitter: Korea University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acidaminococcaceae bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces griseoaurantiacus


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;s__Candidatus Azambacteria bacterium GW2011_GWF1_41_10


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Paracoccus versutus

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Desulfurellaceae bacterium

ncbi_submitter: University of Haifa


ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Glutamicibacter arilaitensis Re117

ncbi_submitter: I.N.R.A. , French National Institute for Agricultural Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Polynucleobacter meluiroseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Cheju Island

ncbi_isolation_source: lava

ncbi_organism_name: Maritalea myrionectae

ncbi_submitter: Cotde-PKNU-Marine-Bio-Convergence


ncbi_country: USA: Portland; Oregon

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Yoonia sp. SDW83-1

ncbi_submitter: Shandong University at Weihai


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Canada: Cambridge Bay; NU

ncbi_isolation_source: Arctic Soil

ncbi_organism_name: Chryseobacterium antibioticum

ncbi_submitter: Kyonggi University


ncbi_country: Turkey: Adana

ncbi_isolation_source: Field

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Candidatus Brachybacter algidus

ncbi_submitter: Aalborg University


ncbi_country: Turkey: Samsun

ncbi_isolation_source: plant

ncbi_organism_name: Streptomyces sp. BSP1

ncbi_submitter: Ondokuz Mayis University


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: Viet Nam: Ben Tre

ncbi_submitter: University of Science, Viet Nam National University Ho Chi Minh City


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Propionibacterium acidifaciens

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Nostoc sp. CHAB 5844

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;s__Nostoc sp. CHAB 5844


ncbi_isolation_source: rectal swab

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter freundii complex sp. 2022EL-00793


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Utah


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Halomonas casei

ncbi_submitter: Iowa State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium D16-36

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Gordonia sp. VNK21

ncbi_submitter: Kyonggi university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. VNK21


ncbi_isolate: metabat2_6755_HET_CTRL_hybrid.208 MAG

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_strain_identifiers: metabat2_6755_HET_CTRL_hybrid.208 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Rhizobium sp. LjRoot98

ncbi_submitter: Aarhus University


ncbi_organism_name: Acinetobacter radioresistens


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_country: Poland: farmland in Jasienowka

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Bialystok


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Rhizobiales bacterium CCH8-D1

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: USA: CO

ncbi_isolation_source: milk bovine cow

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Salmonella enterica

ncbi_submitter: wenzhou Medical university


ncbi_isolation_source: ballast tank

ncbi_submitter: Shandong university


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: The Ohio State University


ncbi_isolation_source: Sediment

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: University of California, Santa Barbara

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 62 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Namibia:Zambezi; Caprivi Region

ncbi_organism_name: Mycoplasma mycoides

ncbi_strain_identifiers: Caprivi

ncbi_submitter: Istituto Zooprofilattico Sperimentale delle Venezie


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Blautia wexlerae


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Candidatus Amarobacter glycogenicus

ncbi_submitter: Aalborg University


ncbi_country: China: a chemical factory; Jinhua City; Zhejiang Province

ncbi_isolation_source: pharmaceutical wastewater

ncbi_organism_name: Pseudomonas fluvialis

ncbi_submitter: Zhejiang University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AGROSAVIA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Ischnura elegans


ncbi_submitter: Quadram Institutte


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2402

ncbi_submitter: Broad Institute


ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Sanguibacter sp. 25GB23B1

ncbi_submitter: Hampton University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae UCI 33

ncbi_strain_identifiers: UCI 33

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae UCI 33


ncbi_country: Colombia: Narino

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Narino


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: MS

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR3758


ncbi_organism_name: Brevibacillus panacihumi

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Ilumatobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Namibia

ncbi_isolation_source: Stegodyphus dumicola nest material

ncbi_organism_name: Pseudomonas sp. IC_126

ncbi_submitter: Aarhus University


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Fulvivirga sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Arthrobacter sp. UYEF1

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Peru: Puno

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_country: Mexico: Mexico City

ncbi_submitter: University of California at Davis


ncbi_country: Japan

ncbi_isolation_source: cheese (Blue type)

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: CIRM-BIA 433

ncbi_submitter: Brigham Young University


ncbi_organism_name: Defluviimonas sp. SAOS-178_SWC

ncbi_submitter: CSIR-IMTECH


ncbi_country: China: Sichuan; Dujiangyan; Hongkou

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: Coxiella burnetii

ncbi_submitter: ANIMAL HEALTH AND VETERINARY LABORATORIES AGENCY


ncbi_isolation_source: Seawater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter bizzozeronii

ncbi_submitter: University of Antwerp, Belgium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Bumgarner Laboratory Department of Microbiology University of Washington


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Serratia liquefaciens


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 2; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


gtdb_type_species_of_genus: t

ncbi_organism_name: Enteractinococcus coprophilus


ncbi_country: South Korea

ncbi_isolation_source: Pulmonary

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yonsei University College of medicine


ncbi_organism_name: Smithella sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-0628

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: cow feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 605

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Olsenella sp.


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_submitter: Ausgem


ncbi_isolation_source: Faeces


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P196P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: bioreactor

ncbi_organism_name: Firmicutes bacterium UBA5819

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5819


ncbi_country: China: Hainan Province

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Russia

ncbi_organism_name: Desulfosporosinus metallidurans

ncbi_strain_identifiers: OL

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux - La Balme-Les Grottes


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Alberta


ncbi_country: USA: Cincinatti

ncbi_isolation_source: abscess

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: USA: Tucson; AZ

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_organism_name: Mycobacterium noviomagense

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_country: Germany: Freising

ncbi_isolation_source: Gut content

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: RWTH Aachen University Hospital


ncbi_assembly_name: Rumen uncultured genome RUG12265

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Sudan

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Khartoum


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Prevotella koreensis

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-7847

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Zhongkai University of Agriculture and Engineering


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Peking University


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Sulfurimonas sp. NW15

ncbi_submitter: Third institute of oceanography, State Oceanic Administration


ncbi_organism_name: Pengzhenrongella phosphoraccumulans

ncbi_submitter: college of life science, Wuhan University


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Yersinia sp. 2541 StPb PI

ncbi_strain_identifiers: 2541 StPb PI

ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__unclassified Yersinia (in: enterobacteria);s__Yersinia sp. 2541 StPb PI


ncbi_organism_name: Streptomyces sp. NPDC057596

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Barnesiella intestinihominis


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_strain_identifiers: NA 83

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: University of Waterloo


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;s__Candidatus Coproplasma stercorigallinarum


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Spribille Lab


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: McGill University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Longicatena sp. 210702-DFI.1.249

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptomyces virginiae


ncbi_country: USA: MN

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: Nanjing University


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas sp. WS 5079

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China

ncbi_isolation_source: chicken waste

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Denmark: Hjorring

ncbi_isolation_source: activated sludge from Hjor_18-Q3-R7-51

ncbi_organism_name: Holophagales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Pseudomonas sp. NBRC 111133

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Spirochaetales bacterium Spiro_05

ncbi_submitter: University of Queensland


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Chthoniobacterales bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: Streptomyces antibioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Ontario

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Public Health Ontario laborato


ncbi_country: USA: New York

ncbi_organism_name: [Clostridium] scindens


ncbi_country: USA

ncbi_isolation_source: Wound Right Shoulder HUMERAL EXPLANT

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: China: Kunming

ncbi_isolation_source: skin secretions

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Kunming University of science and technology


ncbi_country: Australia: Boho South; VIC

ncbi_isolation_source: feces

ncbi_organism_name: Cloacibacillus porcorum


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Flavobacteriaceae bacterium TMED179

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC


ncbi_submitter: Nankai University


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: University of Birmingham


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Leicester


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: Surface patient room

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 192 - depth 50m

ncbi_organism_name: Sphingopyxis sp. REDSEA-S42_B3

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Brazil

ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Instituto Oswaldo Cruz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: Industrial ABE fermentation

ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: LanzaTech Inc


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolate: spongia

ncbi_organism_name: Streptomyces sp. YPW6

ncbi_submitter: BGI Research


ncbi_organism_name: Pseudomonas proteolytica

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Psychroflexus salis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium GW2011_GWA2_43_8


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Toho University


ncbi_isolation_source: apple juice from cider press

ncbi_organism_name: Liquorilactobacillus mali

ncbi_submitter: Korea University


ncbi_organism_name: Lysinibacillus xylanilyticus

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: University of Technology Sydney


ncbi_assembly_name: Salmonella enterica CVM N39863-SQ v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Enterococcaceae bacterium

ncbi_submitter: TEAGASC FOOD RESEARCH CENTRE


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bredeney


ncbi_country: USA: MN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Human Feces Sample

ncbi_organism_name: Bacteroides sp. Marseille-P8574

ncbi_submitter: URMITE


ncbi_country: USA:Alaska; Seward Peninsula

ncbi_isolation_source: root nodule

ncbi_organism_name: Mucilaginibacter xinganensis

ncbi_submitter: Next generation Ecosystem Experiment Arctic


ncbi_organism_name: Ureaplasma parvum


ncbi_country: Colombia: Valle del Cauca

ncbi_isolation_source: water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Marmota baibacina

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Microcoleus sp. N9_A1

ncbi_submitter: Palacky University Olomouc


ncbi_country: Belgium: Gent

ncbi_isolation_source: endophyte

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Thompson Rivers University


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: stool

ncbi_organism_name: Faecalibacterium sp. Marseille-P9312


ncbi_country: Thailand

ncbi_isolation_source: root

ncbi_organism_name: Micromonospora sp. DR5-3

ncbi_submitter: Chulalonkorn University


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany

ncbi_isolation_source: radish rhizosphere

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aurantiaca


ncbi_country: Japan

ncbi_isolation_source: fermentor

ncbi_organism_name: Methylorubrum zatmanii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: uncultured Mesorhizobium sp.

ncbi_submitter: EMG


ncbi_organism_name: Desulfovibrio sp.


ncbi_organism_name: Acetomicrobium mobile DSM 13181

ncbi_submitter: JGI


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Escherichia coli

ncbi_submitter: Gdansk University of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx23031

ncbi_submitter: University Hospital Regensburg


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Minnesota


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- MJ110927A_bin-171

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidales bacterium M8

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M8


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rennes Hospital


ncbi_assembly_name: IMG-taxon 2695420934 annotated assembly

ncbi_organism_name: Bacteroides faecichinchillae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: University of Manitoba


ncbi_country: India: Andhra Pradesh

ncbi_isolation_source: root nodule

ncbi_organism_name: Ensifer sp. MPMI2T

ncbi_submitter: University of Hyderabad


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Moraxellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Portugal: Guilhabreu; District Vila do Conde

ncbi_submitter: Max Rubner-Institut


ncbi_country: China: Shandong Province; Fuyang River; Hengshui City

ncbi_isolation_source: river sediment

ncbi_organism_name: Mariniradius sediminis

ncbi_submitter: Shandong University of Technology


ncbi_organism_name: Butyrivibrio sp. LC3010

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: Canada: Alberta

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Guatemala

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Duke University


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Sao Paulo; Serrana

ncbi_isolation_source: Blood from a Brazilian Purpuric Fever case

ncbi_organism_name: Haemophilus influenzae biotype aegyptius

ncbi_submitter: Institute of Biology - University of Campinas


ncbi_organism_name: Escherichia coli TW10598

ncbi_submitter: Institute for Genome Sciences


ncbi_isolate: Pectobacterium versatile A155-S5-M16

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium versatile

ncbi_strain_identifiers: Pectobacterium versatile A155-S5-M16

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Halanaerobium saccharolyticum


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Harvard University


ncbi_assembly_name: freshwater MAG --- MJ120924B_bin-444

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_country: Singapore

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National University of Singapore


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_submitter: South China Agricultural University


ncbi_submitter: Jiangxi Agricultural University


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: ecological

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Pakistan: Peshawar

ncbi_isolation_source: Pus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umea University


ncbi_country: China: Suqian City; Jiangsu Province

ncbi_submitter: Yangzhou University


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. MPDS

ncbi_strain_identifiers: MPDS

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Japan: Tokyo

ncbi_isolation_source: stool sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BiomX Ltd.


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Burkholderia thailandensis TXDOH

ncbi_strain_identifiers: TXDOH

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Barnesiella sp.


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: Pooled milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori HP260ASii

ncbi_submitter: Washington University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: freshwater of a phosphate removal system

ncbi_organism_name: Emticicia aquatica

ncbi_strain_identifiers: type strain;HMF2925;CECT 8858

ncbi_submitter: University of Valencia, Spain


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus cereus group sp. BceL131

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL131


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Tepidisphaeraceae bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Blautia faecis


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Havforskningsinstituttet


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Candidatus Ventricola gallistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;s__Candidatus Ventricola gallistercoris


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Acinetobacter sp. NS-4

ncbi_submitter: Lycoming College


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Spain

ncbi_isolation_source: brines of olives

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Instituto de la Grasa-CSIC


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFOXYB12_FULL_58_10


ncbi_country: Chile: El Tatio

ncbi_isolation_source: Water

ncbi_organism_name: Geobacillus kaustophilus

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Psychroflexus sp. MES1-P1E

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: EMG


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Queensland


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: Rain forest

ncbi_organism_name: Streptococcaceae bacterium ESL0687

ncbi_submitter: University of Lausanne


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0142

ncbi_submitter: Broad Institute


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_country: China: Fujian; Zijin

ncbi_isolation_source: sediment

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Surat

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_country: United Kingdom

ncbi_isolation_source: soil

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient22 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Microbacterium murale

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Kazakhstan: Almaty

ncbi_isolation_source: sputum sample from patient with tuberculosis

ncbi_organism_name: Mycobacterium tuberculosis MTB-489

ncbi_submitter: Center for Life Sciences, Nazarbayev University


ncbi_country: South Korea

ncbi_isolation_source: seafood (crab)

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: USA: IA

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Academy of Agricultural Science


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_country: China: Beijing

ncbi_isolation_source: patient

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Portland State University


ncbi_country: China: Harbin

ncbi_isolation_source: The second burn ward of Harbin fifth hospital

ncbi_submitter: Institute of Microbiology, Heilongjiang Academy of Sciences


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Ligilactobacillus murinus


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Rhodanobacter sp. Root561

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Roseiflexus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_strain_identifiers: USDA 287

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: EMG


ncbi_organism_name: Nocardioidaceae bacterium


ncbi_country: Australia: Tasmania

ncbi_isolation_source: River estuary

ncbi_organism_name: Shewanella olleyana

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: uncultured Anaerostipes sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: USA: Massachusetts; Boston

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_assembly_name: Rumen uncultured genome RUG14339

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Tang lab


ncbi_country: Canada: Lacombe

ncbi_organism_name: Acidaminococcus sp.

ncbi_submitter: AAFC


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV223

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: bacterium TMED80

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: State University of Londrina


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Mycoplasma sp. VS42A

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Streptomyces sp. NBC_01615

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_submitter: China Jiliang University


ncbi_organism_name: Corynebacterium variabile

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Acinetobacter venetianus

ncbi_submitter: Honam National Institute of Biological Resources


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Burkholderia pseudomallei NCTC 13392

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0050

ncbi_submitter: Broad Institute


ncbi_country: Chile

ncbi_isolation_source: Coho salmon

ncbi_strain_identifiers: ATCC VR-1361

ncbi_submitter: Macrogen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Piscirickettsiaceae;g__Piscirickettsia;s__Piscirickettsia salmonis;x__Piscirickettsia salmonis LF-89 = ATCC VR-1361


ncbi_organism_name: Thermoanaerobaculaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus


ncbi_assembly_name: Leptospira interrogans 3-1 3-2

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Research and Production Center for Microbiology and Virology


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Ardenticatenaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Gluconobacter oxydans

ncbi_submitter: Teagasc


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Saint Louis; MO

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Washington University in St. Louis


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Porphyromonas gingivalis A7A1-28

ncbi_submitter: University of Florida


ncbi_assembly_name: Rumen uncultured genome RUG14235

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Egypt

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Minas Gerais


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: Germany: Muenster

ncbi_isolation_source: anorectal swab

ncbi_submitter: University Hospital Muenster


ncbi_country: Nigeria

ncbi_isolation_source: Camel intentine

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Westhampton


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: United Kingdom

ncbi_isolation_source: coal spoil heap

ncbi_organism_name: Sulfobacillus acidophilus DSM 10332

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus acidophilus;x__Sulfobacillus acidophilus DSM 10332


ncbi_country: Viet Nam

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0030

ncbi_submitter: Broad Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: Desulfobacterium sp.

ncbi_submitter: University of Waterloo


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Czech Republic

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Microbacterium sp. UBA6496

ncbi_submitter: University of Queensland


ncbi_country: Finland: Lahti

ncbi_isolation_source: barley grains

ncbi_organism_name: Acidipropionibacterium jensenii

ncbi_submitter: University of Helsinki


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Kiel

ncbi_isolation_source: artificial sea water

ncbi_organism_name: Erythrobacter sp. G21629-S1

ncbi_submitter: Heinrich-Heine University Duesseldorf


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: biopsy

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Auckland


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Sutterella sp. AM18-8-1

ncbi_submitter: BGI


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_assembly_name: freshwater MAG --- AM_bin-3052

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Curvibacter sp.

ncbi_submitter: BILS


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Brucella canis BCB018

ncbi_submitter: Beijing Institute of Disease Control and Prevention


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Nottingham Trent University


ncbi_assembly_name: WGS using MinION R10.4.1 of Staphylococcus aureus TUM22705

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycobacterium sp.

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-363-A03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: New Hampshire

ncbi_isolation_source: Ixodes scapularis

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Treponema sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Argentina: Buenos Aires City

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease Swab

ncbi_organism_name: Dermabacter hominis

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Phaeobacter inhibens 2.10

ncbi_submitter: Moore Foundation


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Spain

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 57


ncbi_organism_name: Lactococcus sp.


ncbi_isolation_source: environmental

ncbi_organism_name: Micromonospora parastrephiae

ncbi_submitter: Kingston University London, United Kingdom


ncbi_country: Japan

ncbi_submitter: Toho university


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: uncultured Ferrimicrobium sp.


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Priestia sp. YIM B13490

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;x__unclassified Priestia;s__Priestia sp. YIM B13490


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolate: AOP35_02H_surf _bin _28

ncbi_organism_name: Agrococcus casei

ncbi_strain_identifiers: AOP35_02H_surf _bin _28

ncbi_submitter: Genoscope


ncbi_organism_name: Klebsiella sp. 141240

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Symbiopectobacterium sp. RP

ncbi_strain_identifiers: RP

ncbi_submitter: University of South Bohemia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Symbiopectobacterium;x__unclassified Symbiopectobacterium;s__Symbiopectobacterium sp. RP


ncbi_organism_name: Rhodoglobus sp.


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Southampton


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: University of Bordeaux


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Inserm


ncbi_organism_name: Sphingobacterium sp. MYb382

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 66


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: South Korea: Inha University

ncbi_isolation_source: green algae reservoir

ncbi_organism_name: Winogradskyella algicola

ncbi_submitter: Inha University


ncbi_isolation_source: vagina

ncbi_organism_name: Staphylococcus haemolyticus DNF00585

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: DE

ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. 75-3547


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_country: Spain: Barcelona

ncbi_isolation_source: Pleural fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: ITQB


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatus Muproteobacteria;s__Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_02_FULL_65_16


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Northeastern University


ncbi_country: Germany

ncbi_isolation_source: Chives

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA: DC

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: EMG


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Afghanistan

ncbi_isolation_source: stray dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_country: Viet Nam

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_assembly_name: Assembly 1

ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni K1

ncbi_submitter: University of Exeter


ncbi_country: Spain

ncbi_isolation_source: Spleen swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_organism_name: Niabella sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Coxiella burnetii Dugway 5J108-111

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: SAHMRI


ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: McGill University


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: United Kingdom: Great Yarmouth

ncbi_isolation_source: surface coastal seawater

ncbi_organism_name: Piscirickettsiaceae bacterium

ncbi_submitter: Ocean university of China


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - thermal hydrolysis pre-treatment sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Shandong University


ncbi_country: China: Anhui; Wuhu

ncbi_organism_name: Acidisphaera sp.


ncbi_assembly_name: freshwater MAG --- Umea3p2_bin-0712

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR1101

ncbi_submitter: Texas A&M University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Denmark

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_country: Canada: Hemmingford; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas viciae

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: Rectal swab

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_country: China: Guangdong province

ncbi_isolation_source: River sediment contaminated by e-waste

ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Japan:Okinawa; Nago

ncbi_isolation_source: Midgut crypts of stink bug Physopelta gutta

ncbi_organism_name: Paraburkholderia sp. PGU19

ncbi_submitter: Department of Biotechnology, Faculty of Bioresource Sciences, Akita Prefectural University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Actinomadura formosensis

ncbi_submitter: LM-UGent


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Italy: Bologna

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: USA: Williamsport

ncbi_isolation_source: freshwater creek

ncbi_organism_name: Pedobacter sp. PF22-3

ncbi_submitter: Lycoming College


ncbi_organism_name: Candidatus Merdicola faecigallinarum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Merdicola;s__Candidatus Merdicola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Merdicola;s__Candidatus Merdicola faecigallinarum


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Acidimicrobium sp. UBA4025

ncbi_submitter: University of Queensland


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The National University of Malaysia (UKM)


ncbi_country: USA: Florida

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Saccharothrix coeruleofusca

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Genskey