ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: University of Maryland Center for Environmental Science


gtdb_representative: f

ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Enterococcus sp. AZ177

ncbi_submitter: Broad Institute


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: JNTUH


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_assembly_level: Scaffold

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC014646

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Vibrio sp. TRT 17S01

ncbi_strain_identifiers: TRT 17S01

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__unclassified Vibrio;s__Vibrio sp. TRT 17S01


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Cellulomonas phragmiteti

ncbi_strain_identifiers: NCAIM B.02303

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Keck School of Medicine USC; Los Angeles; California

ncbi_isolation_source: blood

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_assembly_name: Rumen uncultured genome RUG12359

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Nitratireductor sp.


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: INRA


ncbi_country: United Kingdom:Devon

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: White Oak Rive Estuary; North Carolina

ncbi_isolation_source: Sulfate-methane transisition zone estuary sediments 16-26 cm

ncbi_organism_name: Bacteroides sp. SM23_62

ncbi_submitter: University of Texas


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. novicida;x__Francisella tularensis subsp. novicida GA99-3548


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Ponticaulis sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Japan

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Niigata University School of Medicine


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M172S2

ncbi_submitter: Universite de Montreal


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Harvard University


ncbi_country: Australia

ncbi_isolation_source: Troups Creek Wetland

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: Brachyspiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Toho University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Iraq

ncbi_isolation_source: respiratory

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: United Kingdom: Scotland; Royal Infirmary; Edinburgh

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Aberdeen


ncbi_country: China: Pearl river; Guangzhou; Guangdong

ncbi_isolation_source: river sediment

ncbi_organism_name: Alsobacter ponti

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: SYSU M60028

ncbi_submitter: Sun Yat-sen University

ncbi_type_material_designation: assembly from type material


ncbi_country: Poland: Poznan

ncbi_isolation_source: BAL

ncbi_organism_name: Streptococcus sp. 3109

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Citrobacter sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut


ncbi_organism_name: uncultured Alloprevotella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Denitromonas sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bradyrhizobium sp. INPA03-11B

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: Amycolatopsis keratiniphila

ncbi_submitter: Shanghai institute of pharmaceutical industry


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Guatemala

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Duke University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Paraprevotella sp.


ncbi_country: Japan: Shimokita Peninsula

ncbi_isolation_source: Coal Bed

ncbi_organism_name: Virgibacillus sp. 6R

ncbi_submitter: Shanghai Ocean University


gtdb_type_species_of_genus: t

ncbi_country: Russia: South-East Siberia; Altai

ncbi_organism_name: Natronoflexus pectinivorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Cryptobacteroides bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides bacterium


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Synechococcus sp. AG-676-A21


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_organism_name: Pseudocolwellia sp. AS88

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-b_bin-618

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_isolation_source: stool from patient on cruising ship

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Mexico: Gulf of Mexico; Chapopote Knoll

ncbi_isolation_source: deep-sea asphalt volcano Chapopote Knoll at the water depth of 2925 m

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Methylococcales;x__unclassified Methylococcales;s__Methylococcales symbiont of Iophon sp. n. MRB-2018


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Puerto Rico

ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Candidatus Delongbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Delongiibacteriota;x__unclassified Candidatus Delongbacteria;s__Candidatus Delongbacteria bacterium


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: South Korea: Daegu

ncbi_isolation_source: chicken meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the seqafrica consortium


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_submitter: Saint-Louis Hospital


ncbi_country: China: Guangdong

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_strain_identifiers: LRS

ncbi_submitter: Enze Hospital


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: Faecalicatena contorta

ncbi_submitter: Chinese Academy of Science


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: India: New Delhi


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Pseudomonas sp. LFS022

ncbi_submitter: Rutgers University


ncbi_country: Brazil: Rio de Janeiro

ncbi_submitter: Oswaldo Cruz Institute


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: China:Chebaling National Nature Reserve; Guangdong Province

ncbi_isolation_source: forest soil

ncbi_organism_name: Corallococcus silvisoli

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Chicago


ncbi_country: Fiji

ncbi_isolation_source: skin

ncbi_submitter: University of Melbourne


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Planktothrix agardhii

ncbi_submitter: Iowa State University


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Ferrimicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC059990

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Moorellaceae bacterium AZ2

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lejia lagoon

ncbi_isolation_source: bare soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: New York; NY

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: urine

ncbi_submitter: University of Muenster


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Africa: Durban

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of KwaZulu Natal


ncbi_country: United Kingdom: Walsall

ncbi_isolation_source: Urine

ncbi_submitter: SC


ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Benin: Ketou

ncbi_isolation_source: fermented cassava

ncbi_organism_name: Periweissella beninensis

ncbi_submitter: Institute of Sciences of Food Production (ISPA)


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured bacterium


ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: University of Manchester


ncbi_submitter: University of Wuerzburg


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Escherichia whittamii

ncbi_submitter: Quadram Institutte


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus constellatus

ncbi_submitter: University of Washington


ncbi_country: Russia: Romashkinskoe oilfield

ncbi_isolation_source: Production water from Romashkinskoe oilfield

ncbi_organism_name: Vreelandella titanicae

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Germany

ncbi_isolation_source: Dust

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_assembly_name: Rumen uncultured genome RUG11509

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom:Truro

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Minnesota

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus sp. UMNPBX4

ncbi_submitter: University of Minnesota


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: AAFC


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Escherichia coli

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine


ncbi_country: United Kingdom

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_organism_name: Enterobacter cloacae


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Clostridium sp. UMB9555A

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_strain_identifiers: MRSA


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R31(2017)

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Anaeromyxobacteraceae bacterium


ncbi_country: Turkey: Ordu

ncbi_isolation_source: marine sediment

ncbi_organism_name: Micromonospora sp. S4605

ncbi_submitter: Newcastle University


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Amherst; MA

ncbi_organism_name: Bifidobacterium callitrichos

ncbi_submitter: University of Massachusetts


ncbi_isolate: XVMDP

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Stanford Genome Technology Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Gardnerella;s__Gardnerella vaginalis;x__Gardnerella vaginalis ATCC 14018 = JCM 11026


ncbi_isolation_source: Poultry faeces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_assembly_level: Chromosome

ncbi_country: Saudi Arabia: central Red Sea

ncbi_isolation_source: Surface water sample from the central Red Sea

ncbi_organism_name: Prochlorococcus sp. RS04

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SurvCARE


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Litorivicinus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: UCC isolate

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Hydrotalea flava

ncbi_submitter: FIOCRUZ-MG


ncbi_country: Germany: Cologne

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus sp. Soil724D2

ncbi_submitter: ETH Zurich


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: McGill University


ncbi_country: USA: Virginia

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: South Korea:Dok-Do

ncbi_organism_name: Paenibacillus hexagrammi

ncbi_submitter: National Institute of Fisheries Science


ncbi_organism_name: Burkholderia cepacia ATCC 25416

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;x__Burkholderia cepacia complex;s__Burkholderia cepacia;x__Burkholderia cepacia ATCC 25416


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium UC8668

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: France: Normandy

ncbi_isolation_source: sink trap

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Tabrizicola sp.

ncbi_submitter: University of Calgary


ncbi_country: USA: Salinas; California

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: USDA-ARS


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bartonella apis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EBI


ncbi_organism_name: Clostridium sp. AF02-29

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Bifidobacterium asteroides


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: Viet Nam: District 12; Ho Chi Minh City

ncbi_organism_name: Kosakonia sacchari

ncbi_strain_identifiers: CRDVN-IX

ncbi_submitter: HUTECH University


ncbi_isolation_source: tundra soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Greece: Tinos

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: University of Minneosta


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_country: Israel

ncbi_isolation_source: Mud

ncbi_organism_name: Lysinibacillus sp. D4B1_S16

ncbi_submitter: Broad Institute


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Thailand

ncbi_isolation_source: Skin mucous

ncbi_organism_name: Acinetobacter sp. KU 011TH

ncbi_strain_identifiers: KU 011TH

ncbi_submitter: Kasetsart University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:b:-


ncbi_country: Canada: Waterloo

ncbi_organism_name: Pseudomonas migulae

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: USA: Tres Rios Wastewater Reclamation Facility in Tucson; Arizona

ncbi_isolation_source: enrichment culture derived from anaerobic digestion as an inoculum

ncbi_organism_name: Geobacter anodireducens

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Hong Kong: Sheung Wan

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas kurunegalensis

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Green_AO_4

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Rhodobacter capsulatus

ncbi_submitter: University of British Columbia


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: University of verona


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Vulcanimicrobiota bacterium


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_assembly_name: Rumen uncultured genome RUG11331

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Federal University of Health Sciences of Porto Alegre


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Brazil: Abrolhos Bank; Bahia

ncbi_isolation_source: bacteria were purified from Symbiodinium sp. co-cultures originally isolated from Mussismilia braziliensis coral

ncbi_organism_name: Pseudoalteromonas shioyasakiensis

ncbi_submitter: UFRJ


ncbi_country: USA

ncbi_isolation_source: marine sediment sample bbl-31

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Phytoplasma sp.

ncbi_submitter: Instituto de Patologia Vegetal CIAP-INTA


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Prolixibacteraceae bacterium


ncbi_organism_name: Gallionella sp.

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: burned soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: NY

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: uncultured Fluviicola sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Unenriched enriched sediment from core 1 20 to 25cm

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Northeastern University


ncbi_assembly_name: Rumen uncultured genome RUG10903

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Aneurinibacillus migulanus


ncbi_country: Pacific Ocean: East of Hawaii; North Pacific Ocean

ncbi_isolation_source: Pacific Ocean from 4004 m depth

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium MP-NPac-SRR3961935-G1


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Thailand: Phetchaburi Province

ncbi_isolation_source: pyrene-degrading bacterial consortium originally obtained from mangrove sediments

ncbi_organism_name: Brucella ciceri

ncbi_submitter: The University of Tokyo


ncbi_country: Mozambique

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: Mt Vernon; Missouri

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Germany

ncbi_isolation_source: urine

ncbi_submitter: SurvCARE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: bacterium

ncbi_submitter: Stockholm University


ncbi_country: Brazil

ncbi_isolation_source: pecked egg organ

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Burkholderia sp. AU31624

ncbi_submitter: University of Michigan


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Taiyuan

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Arcanobacterium haemolyticum DSM 20595

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Streptomyces albogriseolus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Capnocytophaga leadbetteri


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: Clostridium neonatale E263_1

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale E263_1

ncbi_submitter: universite paris cite


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Switzerland

ncbi_organism_name: Xanthomonas graminis pv. poae

ncbi_strain_identifiers: LMG 728

ncbi_submitter: XTeam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas graminis;x__Xanthomonas graminis pv. poae

ncbi_type_material_designation: assembly from pathotype material


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: colon

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Prolixibacteraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Eubacteriaceae bacterium


ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus gallinarum

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Lebanon

ncbi_isolation_source: Perianal swab

ncbi_submitter: University of Balamand


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Agriterribacter sp.


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: Canada: L Assomption

ncbi_isolation_source: sandy soil contaminated with hydrocarbons for 50 years

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy

ncbi_isolation_source: honey

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Brazil:Sao Paulo; Santos

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: SC


ncbi_country: Belarus

ncbi_isolation_source: excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-123

ncbi_submitter: Broad Institute


ncbi_country: Niger

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Dhaka


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: Ireland

ncbi_isolation_source: Bronchoalveolar lavage or sputum

ncbi_organism_name: Mycolicibacterium goodii

ncbi_submitter: St. James's Hospital


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiohalobacter sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: uncultured Nitrosomonas sp.

ncbi_submitter: Lund University


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Subdoligranulum variabile


ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: USDA


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Environmental; Oryza sativa cv. Koshihikari; seedling with blight and chlorosis

ncbi_organism_name: Burkholderia plantarii

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Actinomyces viscosus

ncbi_submitter: EMG


ncbi_country: India: Tamil Nadu; Fort Tiruchirappalli

ncbi_isolation_source: stone ruins (granite) of a fort

ncbi_organism_name: Nocardioides sp. TF02-7

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Utrecht University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: CFBP 6579

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Xanthobacter sp. DSM 14520

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Kasetsart University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Wolbachia endosymbiont of Xenopsylla cheopis

ncbi_submitter: National Institute of Allergy and Infectious Diseases


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: burned soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Beef Patties

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_submitter: Lab of Microbial Oceanography


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: meat

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Delft University of Technology


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Urine

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Ausgem


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: >63 micron

ncbi_organism_name: Vibrio sp. F13

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Hubei

ncbi_isolation_source: Rice wine Koji

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Mobilicoccus massiliensis

ncbi_submitter: EMG


ncbi_country: USA: Iowa

ncbi_isolation_source: Oropharynx

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Streptococcus infantis X

ncbi_strain_identifiers: X

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Malaysia

ncbi_isolation_source: lettuce leaves

ncbi_organism_name: Morganella morganii

ncbi_submitter: University of Malaya


ncbi_organism_name: Neisseria polysaccharea

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Singapore

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: National University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Waterline

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Basel


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: INRA


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Taiwan

ncbi_isolation_source: Taiwan

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_strain_identifiers: Glaceon

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: USA:Las Vegas

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Chthoniobacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Acinetobacter indicus CIP 110367

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Gothenburg - CCUG


ncbi_assembly_name: freshwater MAG --- C3_bin-619

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Caecum


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Shandong; Qingdao

ncbi_isolation_source: Fertile soil

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Qingdao University


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Shewanella sp. Isolate7

ncbi_submitter: NSW Department of Primary Industries


ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Hungary

ncbi_isolation_source: milk from healthy cattle

ncbi_organism_name: Escherichia coli O157:H43 str. T22

ncbi_submitter: BAYGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H43;x__Escherichia coli O157:H43 str. T22


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus 6G-0125-R

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC051183

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India

ncbi_organism_name: Mycobacterium sp. IS-836

ncbi_submitter: JCVI


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA146

ncbi_submitter: Broad Institute


ncbi_country: USA: WA

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: Japan

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Evolutionary Genomics Group


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater effluent sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_assembly_name: Rumen uncultured genome RUG12728

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Geobacter soli

ncbi_submitter: Colorado State University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Beijing University of Chemical Technology


ncbi_organism_name: Streptomyces orinoci


ncbi_organism_name: Tenacibaculum dicentrarchi

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA: Nebraska

ncbi_isolation_source: Pooled small intestine and liver

ncbi_submitter: University of Nebraska-Lincoln

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Streptomyces sp. PBSH9

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_assembly_name: Lb_animalis 381-IL-28 version 1

ncbi_country: USA: College Station; TX

ncbi_isolation_source: commercial biocontrol culture

ncbi_organism_name: Ligilactobacillus animalis

ncbi_submitter: Texas A&M University


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: BGI-Shenzhen


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic: Plzen

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Charles University in Pilsen


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Geobacter hydrogenophilus

ncbi_submitter: AIST


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: USDA-ARS


ncbi_organism_name: Pseudoalteromonas sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Rhodococcus sp. BGS-1C

ncbi_submitter: UFSC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BGS-1C


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ancylobacter sp. G4_0304

ncbi_submitter: University of Crete


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Thessaly


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Streptomyces sp. NPDC101219

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Escherichia coli

ncbi_submitter: Mahidol University


ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: University Hospital Center and University of Lausanne


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_organism_name: Streptomyces griseofuscus


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 2 / B; 5m depth; 0.1 filter

ncbi_organism_name: Spirochaetes bacterium GWB1_27_13

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__unclassified Spirochaetota;s__Spirochaetes bacterium GWB1_27_13


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Comenius University Science Park


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Kaistella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: raw milk for cow(Bos taurus)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Meiji Co., Ltd


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dialister succinatiphilus


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: the First Medicine Centre, Chinese PLA General Hospital


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Germany: Cologne

ncbi_isolation_source: soil

ncbi_organism_name: Nocardioides sp. Soil774

ncbi_submitter: ETH Zurich


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridiales bacterium mt7

ncbi_submitter: URMITE


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EBI


ncbi_country: USA: NY

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Ardenticatenia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Massilia timonae

ncbi_submitter: University of Queensland


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: St. Louis

ncbi_isolation_source: Endovascular

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Maricaulis sp.

ncbi_submitter: German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Allosphingosinicella sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: sputum from CF patient

ncbi_organism_name: Burkholderia dolosa

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Japan

ncbi_organism_name: Paraburkholderia acidicola

ncbi_submitter: University of Notre Dame


ncbi_isolation_source: Colon

ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nocardiopsis alba

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nocardia sp. NPDC050710


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_country: France

ncbi_isolation_source: pesticide

ncbi_organism_name: Bacillus thuringiensis serovar kurstaki

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar kurstaki


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Mali

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Citricoccus sp.

ncbi_submitter: University of Western Australia


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces parvus


ncbi_isolation_source: Human

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 17.H.06


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_country: Thailand: Trat

ncbi_isolation_source: Fermented Garcinia mangostana  s peel

ncbi_organism_name: Acetobacter garciniae

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)


ncbi_country: USA: Indiana

ncbi_isolation_source: chicken

ncbi_submitter: Elanco

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: unknown

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Paris

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: NRRL BD-140

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: University of South Australia


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella variicola


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudarthrobacter sp. J1738

ncbi_submitter: Shanxi Medical University


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Trichocoleus sp. FACHB-69

ncbi_submitter: South China Normal University


ncbi_country: Qatar: Doha

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Sidra Medicine


ncbi_country: Finland

ncbi_isolation_source: blood

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: iowa state university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: China: Beijing

ncbi_isolation_source: superworm

ncbi_organism_name: Myroides albus

ncbi_submitter: Beijing Institute of Technology


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-350

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_strain_identifiers: new MAG-350

ncbi_submitter: Micoorganism


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_isolation_source: Turkey cecum

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Minnesota


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: The University of Adelaide


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: SALMO-NVWA 3.57

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_strain_identifiers: SALMO-NVWA 3.57

ncbi_submitter: dtu national food institute


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_isolate: AOP27_A1_surf _bin _8

ncbi_organism_name: Pseudomonas helleri

ncbi_strain_identifiers: AOP27_A1_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus H19404

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: USA: DC

ncbi_isolation_source: Urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Sink swab

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Hafnia alvei

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_isolation_source: catheter

ncbi_organism_name: Acinetobacter baumannii UH20108

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: Butyrivibrio fibrisolvens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: India

ncbi_isolation_source: C. aurantifolia

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_strain_identifiers: NCPPB 3607

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kyushu university


ncbi_country: Canada: Station Biologique des Laurentides (QC)

ncbi_isolation_source: tree leaf surface

ncbi_organism_name: Methylobacterium sp. J-072

ncbi_submitter: Universite du Quebec a Montreal


ncbi_country: Canada: Quebec

ncbi_organism_name: Serratia marcescens

ncbi_submitter: INRS


ncbi_organism_name: Kitasatospora sp. NPDC002551

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Actinomyces sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA:Delaware Bay; Delaware

ncbi_isolation_source: bay water summer D sample 29 PSU in greater than .8 micron size fraction

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- A14_bin-1730

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom: University of Nottingham; Sutton Bonington Dairy Centre

ncbi_isolation_source: slurry tank

ncbi_submitter: University of Nottingham


ncbi_isolation_source: Stool

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_organism_name: Synechococcaceae cyanobacterium ELA263

ncbi_submitter: University of Waterloo


ncbi_country: USA: Michigan

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Case Western Reserve University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_country: Sweden: Linkoping

ncbi_isolation_source: serial dilution from a cellulose enrichment of ammonia rich biogas reactor

ncbi_organism_name: Clostridium sp. link-BC1

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Endomicrobiia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: blood culture of a hospitalized patient

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Department of Bacteriology, Osaka City University Graduate School of Medicine


ncbi_organism_name: Serratia nevei

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Legionella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Alloclostridium;s__Candidatus Alloclostridium intestinigallinarum


ncbi_isolation_source: blood

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: China

ncbi_isolation_source: river

ncbi_organism_name: Aeromonas bivalvium

ncbi_submitter: China Agricultural University


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: SOX C

ncbi_isolation_source: thiotroph symbiont from mussel gill epithellium

ncbi_strain_identifiers: SOX C

ncbi_submitter: CRC 1182 Origin and Function of Metaorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Bathymodiolus brooksi thiotrophic gill symbiont


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Queensland


ncbi_assembly_name: Campylobacter jejuni CVM N1630 v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: CVM N1630

ncbi_submitter: FDA


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maine


ncbi_organism_name: Streptomyces anthocyanicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany

ncbi_isolation_source: cattle

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_country: United Kingdom


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_isolation_source: Ascites

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli BCE032_MS-12

ncbi_submitter: IGS


ncbi_organism_name: Lachnospiraceae bacterium HCP1S3_A11

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Norway

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Comamonas sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: USA: Washington; Hood Canal

ncbi_isolation_source: Shellfish Hatchery

ncbi_organism_name: Vibrio jasicida

ncbi_submitter: Oregon State University


ncbi_country: Egypt: Wadi Natrun

ncbi_isolation_source: saline lake

ncbi_organism_name: Ectothiorhodospira variabilis

ncbi_strain_identifiers: WN 2R

ncbi_submitter: Bellevue University


ncbi_organism_name: Chryseobacterium hagamense

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;x__unclassified Candidatus Dormibacteria;s__Candidatus Dormibacteria bacterium


ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Idiomarina loihiensis

ncbi_submitter: Fudan University


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_country: China: Beijing

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_isolation_source: plant metagenome

ncbi_organism_name: Flavobacterium alvei

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Brevundimonas sp. BR2-1

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_country: China: Tianjin

ncbi_isolation_source: blood

ncbi_submitter: Peking University People's Hospital


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Escherichia coli

ncbi_submitter: IST Austria


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: water

ncbi_organism_name: Listeria monocytogenes FSL J1-175

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes FSL J1-175


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Streptomyces viridochromogenes

ncbi_strain_identifiers: NRRL 3413

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: South Africa

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Diseases


ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Ireland

ncbi_isolation_source: Food and food processing environment

ncbi_submitter: National University of Ireland, Galway


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Jiahui International Hospital


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Australia: Melbourne

ncbi_isolation_source: aerobically stored beef

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: CSIRO Agriculture and Food


ncbi_country: Brazil

ncbi_isolation_source: surgical-site abscess material

ncbi_strain_identifiers: INCQS 00594

ncbi_submitter: Rede Paraense de GenÃ´mica e ProteÃ´mica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacteroides;s__Mycobacteroides abscessus;sb__Mycobacteroides abscessus subsp. bolletii;x__Mycobacteroides abscessus subsp. bolletii INCQS 00594


ncbi_country: USA: UC Davis Medical Center; Davis; Ca

ncbi_submitter: UC Davis


ncbi_isolation_source: human gut

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Uttar Pradesh; Varanasi; Naipura Khurd

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Kitasatospora sp. NPDC057904

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: teaching hospital in Rio de Janeiro

ncbi_isolation_source: patients

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: UFMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klenkia taihuensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Tunisia

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Cognaticolwellia aestuarii


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 227

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Paraguay

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Megasphaera sp.


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: University of Queensland


ncbi_country: Antarctica: Prydz Bay

ncbi_isolation_source: sea ice algal assemblage

ncbi_organism_name: Polaribacter sp. IC063

ncbi_submitter: University of Tasmania


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: China: Yellow Sea and East China Sea

ncbi_organism_name: Exiguobacterium sp. s161

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s161


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. indica;x__Salmonella enterica subsp. indica serovar 6,14,25:z10:1,(2),7


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Amycolatopsis sp. NPDC051716

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas sp. VE 196-7

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Proteus sp. G4465

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4465


ncbi_country: USA: Seattle

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium