ncbi_submitter: The Second Affiliated Hospital of Soochow University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: China

ncbi_genome_representation: full

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_assembly_level: Scaffold

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Brevibacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Mexico: Jalisco

ncbi_isolation_source: blood

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Universidad de Sonora


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Chemisches und Veterinaeruntersuchungsamt Stuttgart


ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


gtdb_representative: t

ncbi_country: USA

ncbi_organism_name: Herminiimonas sp. KBW02

ncbi_submitter: Tufts University


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium sp. E1214

ncbi_submitter: JCVI


ncbi_organism_name: Paenibacillus enshidis

ncbi_refseq_category: reference genome

ncbi_submitter: Hungarian University of Agriculture and Life Sciences University

ncbi_type_material_designation: assembly from type material


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Syntrophus aciditrophicus

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Canada: Smith s Cove; Nova Scotia

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: Chile: MAUCO

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad del desarrollo


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevundimonas sp. UBA7534

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Marinobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella sp. R38

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_country: Colombia: Narino

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Narino


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: McMaster University


ncbi_organism_name: [Ruminococcus] lactaris


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Hawaii Graf Lab


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Wageningen Bioveterinary Research


ncbi_submitter: Universita Politecnica delle Marche


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2024EL-00592


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Quzhou Hospital Affiliated to Wenzhou Medical University (Quzhou People's Hospital)


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Streptomyces sp. NBC_01462

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: Great Salt Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: University of Utah


ncbi_country: United Kingdom

ncbi_isolation_source: not available: not collected

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_submitter: Hangzhou Xixi Hospital Affiliated to Zhejiang Chinese Medical University


ncbi_country: USA: Toombs Co. GA

ncbi_isolation_source: leaf

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


gtdb_type_species_of_genus: t

ncbi_country: South Korea: Taean

ncbi_isolation_source: rusty iron plate

ncbi_organism_name: Aggregatimonas sangjinii

ncbi_submitter: National Marine Biodiversity Institute of Korea


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0063

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: The University of Texas at Dallas


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: FDA


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: metagenome

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Synechococcus sp. AG-679-E23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Porphyromonas loveana


ncbi_organism_name: Streptomyces cinereoruber

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Paenibacillus xylanexedens

ncbi_submitter: BGI


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Ornithomonoglobus;s__Candidatus Ornithomonoglobus merdipullorum


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_country: USA: WI

ncbi_isolation_source: food dried chocolate organic shake

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Russia: Sakhalin; Daginskiye Thermal Springs

ncbi_isolation_source: enrichment culture from terrestrial mud volcano

ncbi_organism_name: Exilispira sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Vescimonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Kenya

ncbi_isolation_source: MMUST Wastewater treatment plant

ncbi_organism_name: Escherichia coli

ncbi_submitter: MMUST biological


ncbi_country: India

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Bharat


ncbi_country: Japan: Kyoto

ncbi_isolation_source: Sputum isolated from host

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Microbiology, Graduate School of Medicine, Kyoto University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Belgium

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas sp. C6002

ncbi_submitter: Wageningen University & Research


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: clay

ncbi_organism_name: Acinetobacter sp. UBA801

ncbi_submitter: University of Queensland


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: China

ncbi_isolation_source: wastewater from WWTP

ncbi_submitter: Shandong University


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_assembly_name: freshwater MAG --- Ja1_bin-0741

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Anaeromyxobacter sp.

ncbi_submitter: BILS


ncbi_country: India: Bhasaramundia; Chilika Lake

ncbi_organism_name: Pseudomonas sp. BMW13

ncbi_submitter: School of Biotechnology, Kalinga Institute of Industrial Technology-KIIT (Deemed University)


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_organism_name: Carnobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Microlunatus sp.

ncbi_submitter: Zhejiang University


ncbi_country: Israel: Tel Aviv

ncbi_isolation_source: wound culture

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: China: Dunhua

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B3172


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_isolation_source: pooled poultry feces

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Zurich


ncbi_assembly_name: IMG-taxon 2724679805 annotated assembly

ncbi_organism_name: Shimia sagamensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: California; Placer County; Rocklin

ncbi_isolation_source: Kitchen air

ncbi_organism_name: Planococcus glaciei

ncbi_submitter: Sierra College


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: feces; evolved day9-1

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Joint Microbiome Facility

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Apopatosoma intestinale

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Apopatosoma;s__Candidatus Apopatosoma intestinale


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Streptococcus mitis


ncbi_country: Australia: Sydney

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Macquarie University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1378

ncbi_submitter: Broad Institute


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Korean fermented food

ncbi_organism_name: Sporolactobacillus terrae

ncbi_submitter: Korea Food Research Institute


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Bicetre hospital


ncbi_country: India: Guwhati

ncbi_isolation_source: freshwater

ncbi_organism_name: Rhodomicrobium lacus

ncbi_submitter: JNTUH


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium tsurumiense DSM 17777


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 401

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: SNUC 5893

ncbi_submitter: University of Calgary


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- LaPlata-7m-a_bin-350

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: SC


ncbi_country: Brazil: Belem

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_country: Nigeria: Lagos; Eleko Beach

ncbi_isolation_source: shoreline saltwater

ncbi_organism_name: Vibrio vulnificus

ncbi_strain_identifiers: ELK 175

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ GmbH


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: BLOOD CULTURE

ncbi_organism_name: Klebsiella pneumoniae BIDMC 5

ncbi_strain_identifiers: BIDMC 5

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae BIDMC 5


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Streptomyces griseoluteus


ncbi_country: China: Shanghai

ncbi_submitter: Huashan Hospitial of Fudan University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: uncultured Lewinella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Streptomyces coelicoflavus

ncbi_submitter: Facultad de Ciencias Quimicas Universidad Autonoma de Chihuahua


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Yantai University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-4611

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidota bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_51 WWTPs effluent

ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Adlercreutzia sp.


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0704

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: South Africa: Durban

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: uncultured Oligoflexia bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Lysinibacillus sp. UBA6686


ncbi_country: China: Tibetan Plateau

ncbi_isolation_source: Tibetan Plateau lake

ncbi_organism_name: Arthrobacter sp. ZGTC131

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Poultry

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: SRCAMB


ncbi_organism_name: Claveliimonas bilis

ncbi_submitter: RIKEN BioResource Research Center


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Thermoflexus sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: marine metagenome


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_assembly_level: Chromosome

ncbi_isolation_source: human blood

ncbi_organism_name: Borrelia nietonii YOR

ncbi_strain_identifiers: YOR

ncbi_submitter: Rocky Mountain Labs, NIAID, NIH


ncbi_organism_name: Pseudomonas citronellolis NBRC 103043

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas aeruginosa group;s__Pseudomonas citronellolis;x__Pseudomonas citronellolis NBRC 103043


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_isolation_source: skin abscess

ncbi_organism_name: Brucella inopinata

ncbi_submitter: Robert Koch Institute


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Olsenella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Mesocricetibacter sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillus sp.


ncbi_assembly_name: Rumen uncultured genome RUG13707

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Leuconostoc mesenteroides


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces


ncbi_organism_name: Ideonella sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Thailand

ncbi_isolation_source: Endotracheal tube

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Prince of Songkla University


ncbi_assembly_name: Rumen uncultured genome RUG13634

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Blautia hansenii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_country: Venezuela

ncbi_submitter: Beijing Institute of Genomics, CAS


ncbi_organism_name: Vibrio sp. Vb2944

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Rhizobium esperanzae

ncbi_strain_identifiers: SEMIA 4071

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Belgium

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Chicago


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Neisseria macacae ATCC 33926

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Candidatus Raskinella chloraquaticus

ncbi_submitter: University of Queensland


ncbi_isolate: metabat2_coassembly_bwa.969 MAG

ncbi_organism_name: Candidatus Limivivens merdigallinarum

ncbi_strain_identifiers: metabat2_coassembly_bwa.969 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Limivivens;s__Candidatus Limivivens merdigallinarum


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_organism_name: Monoglobaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: NABI 400

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_submitter: Univerisity of Pretoria


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: Stockholm University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_country: Canada

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ruian Maternal and Child Health Hospital


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Variovorax beijingensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea: Chungju

ncbi_isolation_source: hot spring

ncbi_organism_name: Microbacterium neungamense

ncbi_submitter: Silla University


ncbi_country: Bangladesh: Dhaka

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: North South University


ncbi_country: Ghana

ncbi_isolation_source: river water

ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Tokyo Medical and Dental University


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay warer

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Clemson University


ncbi_country: Portugal: Azores

ncbi_isolation_source: lice from Fringilla coelebs morelatti

ncbi_organism_name: Wolbachia endosymbiont of Menacanthus eurysternus

ncbi_submitter: Faculty of Science, University of South Bohemia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0399

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-418-K17

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Escherichia coli O111:H8

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Sporosarcina sp. ANT_H38

ncbi_submitter: University of Warsaw


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Methylococcaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Maimonides Biomedical Research Institute of Cordoba


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin48

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_strain_identifiers: MDV bin48

ncbi_submitter: Monash University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Salinibacterium sp. CAN_S4

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 757

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: USA: Harvard Forest; Massachusetts

ncbi_organism_name: Citrobacter freundii


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: Yonsei University


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with hylon

ncbi_organism_name: Coprococcus catus

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Roseimaritima sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus UCIM6105

ncbi_submitter: Broad Institute


ncbi_country: Greece

ncbi_isolation_source: water

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_country: USA: New York City

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: Bronchoalveolar fluid

ncbi_organism_name: Haemophilus influenzae 60294N1

ncbi_submitter: Menzies School of Health Research


ncbi_submitter: University of Lethbridge


ncbi_country: Dominican Republic: Santo Domingo

ncbi_isolation_source: Isabela River

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: INTEC-UFPA


ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Mariniphaga sp.

ncbi_submitter: EPFL


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium


ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus H18813


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Thailand: Chantaburi

ncbi_isolation_source: roots of Jambolan palm tree

ncbi_organism_name: Actinomadura syzygii

ncbi_submitter: Japan Collection of Microorganisms, Microbe Division, RIKEN BioResources Center, Tsukuba, Japan


ncbi_country: Czech Republic

ncbi_isolation_source: spleen

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Guatemala

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Heyndrickxia faecalis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: screen

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae UHKPC40

ncbi_submitter: JCVI


ncbi_isolation_source: Human

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Kordiimonas sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_country: Sweden: Orebro

ncbi_isolation_source: cornea

ncbi_organism_name: Corynebacterium macginleyi

ncbi_submitter: Aarhus University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_strain_identifiers: B-DolR

ncbi_submitter: Johns Hopkins University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Bovine mastitis

ncbi_organism_name: Lactococcus garvieae subsp. garvieae

ncbi_submitter: Agroscope


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Stool-RF

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: RUH 134

ncbi_submitter: Laval University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_strain_identifiers: NT


ncbi_country: Netherlands: Hoeven

ncbi_isolation_source: soil

ncbi_organism_name: Paraburkholderia terricola

ncbi_submitter: Netherlands Institute of Ecology


ncbi_isolation_source: Pre-flight (to International Space Station) Astronaut Skin Swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chthonomonas calidirosea

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_assembly_name: freshwater MAG --- LinL5_bin-0499

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Worcestershire

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Butyrivibrio fibrisolvens MD2001

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Ecuador

ncbi_organism_name: Vibrio hepatarius

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Maribacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Fujian; Dongshan; Fujian Dongshan Bay

ncbi_organism_name: Tenacibaculum mesophilum

ncbi_submitter: Xiamen University


ncbi_organism_name: Enterococcus sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_isolation_source: Faeces


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Shanghai

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Mexico

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Universidad Autonoma Metropolitana


ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Bangladesh: Matlab

ncbi_isolation_source: drinking water

ncbi_submitter: icddr,b


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_organism_name: Bacteroidales bacterium SW299

ncbi_submitter: The Roslin Institute (University of Edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium SW299


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_country: Italy

ncbi_isolation_source: duedonoscope instrument

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Campus Bio-medico of Rome


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Urine

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Vicingaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Erysipelotrichaceae bacterium I46

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12308

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pomona


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Providencia sp. Me31A

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: BGI


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Promicromonospora kroppenstedtii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__candidate division WOR-1 bacterium RIFOXYB12_FULL_52_16


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Vulcanimicrobiota bacterium


ncbi_country: Czech Republic: Bzenec

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: FL

ncbi_isolation_source: feces calf (Bos taurus)

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV239

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV239


ncbi_country: Switzerland: Zuerich

ncbi_isolation_source: heated-cooler unit water tank

ncbi_submitter: Leibniz Institute DSMZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;sb__Mycobacterium intracellulare subsp. chimaera


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Enterobacter cloacae complex sp. P11RS

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P11RS


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cryomorphaceae bacterium


ncbi_country: Japan

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Meijo University faculty of pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Lebanese American University


ncbi_assembly_name: freshwater MAG --- Ki1-1-6m_bin-0840

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWF2_45_11


ncbi_country: South Korea

ncbi_isolation_source: chicken slaughterhouse

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Korea University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with retrograde maize

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: California; Kern County

ncbi_isolation_source: louse from fur of Tamias merriami

ncbi_organism_name: Candidatus Lightella neohaematopini

ncbi_submitter: University of South Bohemia in Ceske Budejovice, Faculty of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__lice endosymbionts;g__Candidatus Lightella;s__Candidatus Lightella neohaematopini


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Norway: Viken

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_01_FULL_55_25


ncbi_country: Austria: Lower Austria; Krems

ncbi_isolation_source: rectal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: China: Guangzhou

ncbi_organism_name: Edwardsiella tarda DT

ncbi_strain_identifiers: DT

ncbi_submitter: East China University of Science and Technology, China


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus puerhi

ncbi_submitter: Beijing University of Chemical Technology


ncbi_country: Hong Kong

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: NCPPB 4682

ncbi_submitter: University of Exeter


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Alloprevotella sp.


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Aerococcus loyolae

ncbi_submitter: Loyola University Chicago


ncbi_country: Croatia

ncbi_organism_name: Brucella suis bv. 2

ncbi_submitter: Croatian Veterinary Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella suis;x__Brucella suis bv. 2


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Acutalibacter muris


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Sphingobacterium sp. UBA6645

ncbi_submitter: University of Queensland


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Roseateles sp.

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: bioMerieux


ncbi_country: Peru

ncbi_isolation_source: root nodule of Phaseolus vulgaris

ncbi_organism_name: Rhizobium sp. H4

ncbi_submitter: Universidad Nacional Agraria La Molina


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Verona, Italy


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Urine

ncbi_organism_name: Peptoniphilus lacrimalis


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Micromonospora taraxaci

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: PTC fluid

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Bacillus safensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Leptotrichia sp.


ncbi_country: Ukraine

ncbi_isolation_source: wound

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-111

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Rhodospirillales bacterium

ncbi_strain_identifiers: new MAG-111

ncbi_submitter: Micoorganism


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Egypt: Wadi Natrun

ncbi_isolation_source: saline lake

ncbi_organism_name: Halorhodospira halochloris

ncbi_submitter: Bellevue University


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: China:Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Nitrosomonas sp. H1_AOB3

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterococcus dongliensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Parvibaculum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- YR2_bin-0714

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: icddr,b


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudolysinimonas sp.


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: University of Queensland


ncbi_organism_name: Parvibaculum sp.


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Massachusetts

ncbi_isolation_source: ethane-enriched microcosm from Aquifer solid

ncbi_organism_name: Mycolicibacterium sphagni

ncbi_submitter: North Carolina State University


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Paraburkholderia sp. JPY419

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Mucilaginibacter sp.


ncbi_submitter: Chinese Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;x__Rickettsia sibirica subgroup;s__Rickettsia sibirica;sb__Rickettsia sibirica subsp. sibirica;x__Rickettsia sibirica subsp. sibirica BJ-90


ncbi_organism_name: Escherichia coli O111:H8

ncbi_submitter: United State Department of Agriculture


ncbi_assembly_name: Rumen uncultured genome RUG14493

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 608

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_strain_identifiers: 59v summer

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Escherichia coli

ncbi_submitter: Finnish Food Authority


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_organism_name: Bacillus sp. OK-29

ncbi_submitter: Orissa University of Agriculture & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. OK-29


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Loc080925-6m_bin-1230

ncbi_submitter: BILS


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Peptostreptococcaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Ireland: Dublin

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Maynooth University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Russia: Bykovsky Peninsula;Polar Fox Lagoon

ncbi_isolation_source: Polar Fox Lagoon sediment taken using 3m corer (60 mm diameter)

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_country: USA: Alabama

ncbi_isolation_source: tongue

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Chryseobacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: University of Calgary


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus bombysepticus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Streptomyces sp. S584

ncbi_submitter: Museum national Histoire naturelle


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_organism_name: Paenibacillus sp. FSL R5-0486

ncbi_submitter: Penn State


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_submitter: URMC


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori GAM103Bi

ncbi_submitter: Washington University


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: USFDA


ncbi_organism_name: Porphyromonas sp.


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Europe

ncbi_organism_name: Mycobacterium marinum str. Europe

ncbi_strain_identifiers: Europe

ncbi_submitter: Gyeongsang National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium ulcerans group;s__Mycobacterium marinum;x__Mycobacterium marinum str. Europe


ncbi_submitter: Huzhou cdc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Candidatus Accumulibacter jenkinsii

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter jenkinsii


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Lacticaseibacillus paracasei


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermocatellispora tengchongensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: Antarctica:Skarvsnes; Hotoke-Ike lake

ncbi_isolation_source: water

ncbi_organism_name: Sphingomonas sp. HMP6

ncbi_submitter: Research Organization of Information and Systems


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: Germany

ncbi_submitter: FDA/CFSAN


ncbi_country: France

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_isolation_source: Tinto River

ncbi_organism_name: Acididesulfobacillus acetoxydans

ncbi_strain_identifiers: INE

ncbi_submitter: Wageningen University


ncbi_country: Portugal: Amadora-Sintra

ncbi_isolation_source: Low Respiratory Tract Infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides sp. CAG:98

ncbi_submitter: DTU


ncbi_isolation_source: stony coral Favites sp.

ncbi_organism_name: Streptomyces marincola

ncbi_strain_identifiers: SCSIO 64649

ncbi_submitter: South China Sea Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Vibrio sp. 1731

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_assembly_name: IMG-taxon 2671180078 annotated assembly

ncbi_organism_name: Nitrosospira sp. Nsp14

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: Bangladesh

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_assembly_name: freshwater MAG --- A14_bin-2059

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Geobacter sp.

ncbi_submitter: BILS


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Tang lab


ncbi_country: USA: Lake Erie; Sandusky Bay; Ohio

ncbi_isolation_source: enrichment culture of drinking water treatment residuals inoculated with Planktothrix agardhii

ncbi_organism_name: Planktothrix agardhii Bin4

ncbi_submitter: The Ohio State University


ncbi_country: Japan: Osaka; Kishiwada

ncbi_isolate: SMMEIOPA

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: SMMEIOPA

ncbi_submitter: John McCutcheon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: Atlantic Ocean: Northern Atlantic Ocean

ncbi_isolation_source: ocean water

ncbi_submitter: Uppsala University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Asaccharobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Serratia marcescens

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: USA: Davis; CA

ncbi_organism_name: Parazoarcus communis SWub3 = DSM 12120

ncbi_submitter: University of California, Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Rhodocyclales;f__Zoogloeaceae;g__Parazoarcus;s__Parazoarcus communis;x__Parazoarcus communis SWub3 = DSM 12120


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Dryocola sp. BD586

ncbi_submitter: Mayo Clinic


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Amycolatopsis thermoflava

ncbi_submitter: BGI Research


ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: New Zealand: Canterbury region

ncbi_submitter: The University of Auckland


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Harvard University


ncbi_assembly_name: Rumen uncultured genome RUG12979

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Pomona; CA

ncbi_isolation_source: fecal samples

ncbi_organism_name: Bacillus sp. HF117_J1_D

ncbi_submitter: Western University of Health Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. HF117_J1_D


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: environmental-WWTP

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_strain_identifiers: Case 1

ncbi_submitter: National Reference Centre for Multidrug-resistant Gram-negative Bacteria (NRC)


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: USA: California; Calistoga

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Kiel University


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: Rumen uncultured genome RUG496

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Alberta

ncbi_isolation_source: Ground beef from beef processing plant

ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Avelusimicrobium gallicola

ncbi_submitter: addis ababa university


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-1138

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Russia: Moscow region

ncbi_isolation_source: plant

ncbi_organism_name: Clavibacter sp. VKM Ac-2542

ncbi_strain_identifiers: VKM Ac-2542

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium sp. E1715

ncbi_submitter: JCVI


ncbi_country: USA: NY

ncbi_isolation_source: feces seagull

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: seawater from 55 GOS stations collected during the Global Ocean Sampling Expedition

ncbi_organism_name: SAR86 cluster bacterium SAR86A

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium SAR86A


ncbi_country: South Korea: Yeongju

ncbi_isolation_source: ginseng field soil

ncbi_organism_name: Sphingomonas cremea

ncbi_submitter: Hankyong National University


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Bacillus sp. LK7

ncbi_submitter: University of Malaya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. LK7


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDQ8D205P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Caldilineaceae bacterium SB0661_bin_32

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SCOPE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Greece: Olymbiada

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Prevotella sp.


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 56

ncbi_strain_identifiers: CHS 56

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 56


ncbi_submitter: Translational Health Science and Technology Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Frigidibacter albus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Germany: Thuringia

ncbi_organism_name: Aliarcobacter cibarius

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Liver abscess

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Para


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: Providencia sp. 1709051003

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Qipengyuania citrea

ncbi_submitter: University of Southern California


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: USAMRD-A


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-0538

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__candidate division BRC1 bacterium ADurb.BinA292


ncbi_organism_name: Escherichia coli O157:H7 str. K4527

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K4527


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_submitter: Shandong Provincial Center for Disease Control and Prevention


ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: pus from wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Malaysia: Selangor

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Halalkalibaculum sp. DA3122

ncbi_submitter: Shandong University


ncbi_assembly_name: Rumen uncultured genome RUG12476

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: Wayne State University


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Denmark: Arhus

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Rhizobium sp. 18065

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 8823

ncbi_submitter: University of Exeter


ncbi_assembly_name: Mailhella massiliensis

ncbi_organism_name: Mailhella massiliensis

ncbi_submitter: URMITE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Brucella abortus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d'Aosta


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_organism_name: Photorhabdus akhurstii

ncbi_submitter: Taiwan Agricultural Chemicals and Toxic Substances Research Institute


ncbi_submitter: National Research Council Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: Mycoplasma sp. SK341A

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: uncultured Gemmatimonas sp.


ncbi_organism_name: Serratia sarumanii

ncbi_submitter: University of Calgary


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Niallia taxi

ncbi_submitter: shandongshengkexueyuan


ncbi_country: Canada: Quebec

ncbi_isolation_source: kidneys from trout at fish farm

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Universite Laval


ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: China: Liaoning; Bohai Sea

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Dalian Minzu University of China


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: Brazil: Manaus

ncbi_isolation_source: endophytic of Paullinia cupana (Mart) Ducke

ncbi_organism_name: Streptomyces shenzhenensis

ncbi_submitter: Universidade Federal de Mato Grosso


ncbi_country: China: Guangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangzhou center for disease control and prevention


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University