ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptomyces sp. NPDC019208

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


gtdb_representative: t

ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Catenibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Sagittula sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Streptosporangium longisporum

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: United Kingdom

ncbi_isolation_source: Laboratory strain

ncbi_submitter: SC


ncbi_organism_name: Bacillus sp. FSL K6-3221

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-3221


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Shanghai Ocean University


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Leptospira biflexa

ncbi_submitter: University Duisburg-Essen


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O121:H19;x__Escherichia coli O121:H19 str. 2009C-4050


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Salmonella enterica CVM N37917-SQ v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Blood Culture

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_country: Singapore

ncbi_isolation_source: Sugary water

ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: NTU - Nanyang Technological University


ncbi_country: Australia

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. STm7


ncbi_country: Viet Nam

ncbi_isolation_source: Brassica juncea rhizosphere

ncbi_organism_name: Bacillus tropicus

ncbi_submitter: ENDOBICA


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-399

ncbi_submitter: JCVI


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Niveispirillum sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Bacillus cereus group sp. BceL310

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL310


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Vienna


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Prolixibacteraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: Ottowia pentelensis

ncbi_strain_identifiers: NCAIM B.02336

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Achromobacter dolens

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: University of Utah


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Erciyes Univ. Faculty of Veterinary Medicine


ncbi_organism_name: Streptomyces sp. NPDC085900

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Nocardiopsis sp. PBL

ncbi_strain_identifiers: PBL

ncbi_submitter: Northeast Agricultural University


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: bacterium

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_organism_name: Bacilli bacterium PM5-9

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__unclassified Bacilli;s__Bacilli bacterium PM5-9


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Desulfobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Queensland


ncbi_country: South Korea: Wanju

ncbi_isolation_source: Lettuce

ncbi_organism_name: Lelliottia wanjuensis

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Sphingomonadales bacterium


ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: NWO- Dunea–Vitens: Sand Filtration partnership


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_organism_name: Candidatus Peribacter riflensis

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__Candidatus Peribacter;s__Candidatus Peribacter riflensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;g__Candidatus Peribacter;s__Candidatus Peribacter riflensis


ncbi_country: Israel: Jerusalem; The Tisch Family Biblical Zoo

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: The Hebrew University of Jerusalem


ncbi_country: South Korea: Dokdo Island; East Sea of Korea

ncbi_isolation_source: soil

ncbi_organism_name: Devosia insulae DS-56

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SRCAMB


ncbi_organism_name: Nocardia sp. NPDC019304

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Micromonospora sp. NPDC047074


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Streptococcus gallolyticus

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Spain

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_assembly_name: Lgrayisubspmurrayi

ncbi_organism_name: Listeria grayi FSL F6-1183

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria grayi;x__Listeria grayi FSL F6-1183

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Prochlorococcaceae cyanobacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Staphylococcus epidermidis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Blautia obeum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Shaoguan

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: USA

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Guangdong institue of microbiology


ncbi_organism_name: Streptomyces sp. NPDC006173

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Maryland Baltimore


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Mycolicibacterium sp.

ncbi_submitter: University of Utah


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Barcelona


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio mediterranei

ncbi_submitter: NSW Department of Primary Industries


ncbi_organism_name: Niallia circulans

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_submitter: University of Florida


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Madison; WI

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Prochlorococcus sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Agriterribacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Switzerland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: USA: Michigan

ncbi_isolation_source: Residence hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: France: Loir-et-Cher

ncbi_isolation_source: genital tract of 6 year-old jack from a stud farm

ncbi_organism_name: Taylorella asinigenitalis MCE3

ncbi_submitter: Anses


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Nitrospirota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Faecalibacillus intestinalis


ncbi_organism_name: uncultured Puniceicoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_organism_name: Helicobacter bilis

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Mexico

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UNIVERSIDAD EL BOSQUE


gtdb_type_species_of_genus: t

ncbi_organism_name: Utexia brackfieldae

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Wuerzburg; Botanical Garden

ncbi_isolation_source: leaves/phyllosphere

ncbi_organism_name: Rhodococcus sp. ARP2

ncbi_submitter: University of Wuerzburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. ARP2


ncbi_assembly_name: Djasiman

ncbi_organism_name: Leptospira interrogans

ncbi_strain_identifiers: Djasiman

ncbi_submitter: INDICASAT AIP


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Queensland


ncbi_isolate: SPRUCE 120

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_strain_identifiers: SPRUCE 120

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_submitter: University of Oviedo


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_assembly_name: freshwater MAG --- Umea_bin-07552

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Streptomyces sp. NPDC017260

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_level: Chromosome

ncbi_organism_name: Lysinibacillus telephonicus

ncbi_submitter: University of Calcutta


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Bacilli bacterium


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Asaia bogorensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Oleiagrimonas sp.

ncbi_submitter: McGill University


ncbi_organism_name: Crocosphaera watsonii WH 8502

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Ireland: Dublin

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Maynooth University


ncbi_country: Canada: Calgary

ncbi_isolation_source: chemostat inoculated with river sediment

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Nocardia sp. NPDC005825


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolate: CB2 bin16

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: CB2 bin16

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: anammox granule sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Chongqing university


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: India

ncbi_isolate: CGEMS

ncbi_isolation_source: infant under 1 year of age; breastfeeding; had prelonged diarrhea

ncbi_organism_name: Candidatus Campylobacter infans

ncbi_strain_identifiers: CGEMS

ncbi_submitter: University of Georgia


ncbi_submitter: University of Waterloo


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Methylobacterium fujisawaense

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Pacific Ocean

ncbi_isolation_source: basaltic crustal fluids

ncbi_submitter: University of Hawaii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium JdFR-80


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Campbelliibacteriota;s__Candidatus Campbellbacteria bacterium RIFCSPHIGHO2_01_FULL_34_10


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto Nacional de Salud


ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky;x__Salmonella enterica subsp. enterica serovar Kentucky str. 20793


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Gyeongsangnam-do; Jinju-si

ncbi_isolation_source: Rotten-wood

ncbi_organism_name: Mucilaginibacter jinjuensis

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Enterococcus sp. DIV1054d

ncbi_submitter: Broad Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-359

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Saprospiraceae bacterium

ncbi_strain_identifiers: new MAG-359

ncbi_submitter: Micoorganism


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Enterococcus faecalis TX1467


ncbi_country: Brazil

ncbi_isolation_source: sewage water

ncbi_organism_name: Yersinia intermedia


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_strain_identifiers: kraussei MC_96

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: AIT Austrian Institute of Technology


ncbi_country: USA: MD

ncbi_isolation_source: Powdered Infant Formula

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: CT

ncbi_isolation_source: ready to eat deli meat cooked ham

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 33944


ncbi_country: Italy: Monte Argentario; Grosseto

ncbi_isolation_source: twig

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: Metagenomic sequencing for Xylella fastidiosa detection in Monte Argentario


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Shanghai Ocean University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Papua New Guinea

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Lucinoma kastoroae)


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Balneola sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: microbial mat

ncbi_organism_name: Candidatus Obscuribacterales bacterium

ncbi_submitter: University of Liege

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__unclassified Candidatus Obscuribacterales;s__Candidatus Obscuribacterales bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Cryobacterium sp.

ncbi_submitter: The University of Hong Kong


ncbi_submitter: BioHealthBase

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. holarctica;x__Francisella tularensis subsp. holarctica FTNF002-00


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Jinhua Central Hospital


ncbi_country: USA: AK

ncbi_isolation_source: skin king salmon

ncbi_organism_name: Photobacterium phosphoreum


ncbi_country: Japan

ncbi_isolation_source: feces; 3 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: bioBiome, Inc.


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site C

ncbi_isolation_source: Beach sand

ncbi_organism_name: Eudoraea sp.

ncbi_submitter: Monash University


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AM27-27

ncbi_submitter: BGI


ncbi_country: Canada: Quebec; Selby lake

ncbi_isolation_source: non-axenic culture from freshwater

ncbi_submitter: Universite de Montreal


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020046158

ncbi_submitter: Broad Institute


ncbi_country: Egypt: Ash Sharqia; El-Hosanyah

ncbi_isolation_source: root nodules

ncbi_organism_name: Klebsiella grimontii

ncbi_strain_identifiers: FR 40

ncbi_submitter: msa univeristy


ncbi_organism_name: Bilifractor sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: China: Nandan County; Guangxi Province

ncbi_isolation_source: raw gallnut honey

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Jiangnan University


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Region Zealand


ncbi_country: United Kingdom: Aberdeen

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: New Zealand: South Island

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_isolation_source: chicken meat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: NORWEGIAN VETERINARY INSTITUTE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter freundii complex sp. 2024EL-00614


ncbi_organism_name: Bifidobacterium apri

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: uncultured Kordia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Alistipes onderdonkii


ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Schleiferiaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_organism_name: Streptomyces sp. NPDC047967

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Denmark: Aarhus

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Aarhus University Hospital


ncbi_organism_name: Leptotrichia hongkongensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: China: Tianjin

ncbi_isolation_source: mice gut

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: nankai university


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Zhejiang

ncbi_isolation_source: vegetable

ncbi_organism_name: Acinetobacter sp. YH12158

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_submitter: The First Hospital of Jiaxing


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: OR

ncbi_isolation_source: ground turkey

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_isolation_source: DSMZ collection (DSM 12730)

ncbi_organism_name: Thiothrix winogradskyi

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Kitasatospora cinereorecta

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium sp. 1274761.0

ncbi_submitter: JCVI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Canada

ncbi_organism_name: Ruminococcus gauvreauii DSM 19829

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: biopsy

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: China: Shandong

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Boston

ncbi_isolation_source: URINE

ncbi_organism_name: Klebsiella pneumoniae BIDMC 55

ncbi_strain_identifiers: BIDMC 55

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae BIDMC 55


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: USA: MN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Amylibacter sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 1110807699


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: USA: IA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Oscillibacter sp. MSJ-31

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Beijing

ncbi_isolation_source: contaminated drinking water

ncbi_organism_name: Enterococcus ureilyticus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Rutgers University


ncbi_assembly_name: Rumen uncultured genome RUG10953

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Bacillales bacterium UBA5360

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Holdemania massiliensis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia: Segamat

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: Atlantibacter hermannii


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Tang lab


ncbi_country: South Africa: North West; Free State; Northern Cape and Gauteng provinces

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas vasicola pv. zeae

ncbi_submitter: Colorado State University


ncbi_country: China: Zhejiang

ncbi_isolation_source: phlegm

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The First Affiliated Hospital of Zheng University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 99638;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: cold seep

ncbi_organism_name: Azoarcus taiwanensis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: USA

ncbi_isolation_source: air

ncbi_organism_name: Buchnera aphidicola (Thelaxes californica)

ncbi_strain_identifiers: Tca

ncbi_submitter: University of Hawaii


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Paenibacillus mucilaginosus 3016

ncbi_submitter: Institute of Agricultural Resources and Regional Planning,


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokubacteria bacterium GWA2_70_23


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: San Francisco

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Danny from private home

ncbi_organism_name: Lachnospira sp.

ncbi_submitter: AnimalBiome


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar 44:z4,z23:-


ncbi_country: Slovenia

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Comamonadaceae bacterium


ncbi_country: USA: Texas

ncbi_organism_name: Chryseobacterium sp. SORGH_AS_0447

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Candidatus Faecousia excrementipullorum


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. IR5402

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5402


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Enterobacter sp. BNK-2

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Salmonella sp. 2018-SM916

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Sorangium sp. So ce854

ncbi_strain_identifiers: So ce854

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce854


ncbi_country: Italy

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: China: Shandong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Aricultural University


ncbi_isolation_source: ileum

ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: University of Minnesota


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Candidatus Neomicrothrix parvicella

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Tenacibaculum sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Omsk

ncbi_isolation_source: cervical smear

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenereology and Cosmetology (CNIKVI)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: ENVO: 01000924(plumbing drain)

ncbi_submitter: Mahidol University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Institute for Advanced Biosciences, Keio University


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_assembly_name: Rumen uncultured genome RUG10995

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (large; >=63 micrometer filter)

ncbi_organism_name: Vibrio cyclitrophicus ZF65

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC004675

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: microbial mat

ncbi_organism_name: Richelia sp. UBA3957

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Anaeromassilibacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB243_497I20


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Arcobacter nitrofigilis

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Caulobacter sp. Root656

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_assembly_name: Rumen uncultured genome RUG10280


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College Dublin


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lactobacillus acidophilus ATCC 4796

ncbi_strain_identifiers: ATCC 4796

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R988;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef sponge

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: James Cook University


ncbi_country: China

ncbi_isolation_source: Exudate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Brevundimonas aurantiaca

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Fudan University


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Devosia sp. BK

ncbi_strain_identifiers: BK

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: Faeces


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_submitter: Loyola University Chicago


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: wound right thigh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Afghanistan

ncbi_isolation_source: Surveillance

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: Estonia

ncbi_submitter: University of Tartu


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_submitter: Faculdade de Medicina Veterinaria e Zootecnia de Botucatu

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_country: Italy

ncbi_isolation_source: greenhouse maintained

ncbi_submitter: Università di Udine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrIII (X-disease group);s__Poinsettia branch-inducing phytoplasma;x__Poinsettia branch-inducing phytoplasma str. JR1


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Zhongkai University of Agriculture and Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Sourdough

ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Northeast Agricultural University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolate: Listeria monocytogenes strain AB120

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: Listeria monocytogenes strain AB120

ncbi_submitter: Institute of Biotechnology, University of Helsinki


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA:Florida; Ramrod Key

ncbi_organism_name: Streptomyces sp. WMMC897

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Minnesota

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Minnesota


ncbi_organism_name: Micromonospora sp. NPDC002931

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_submitter: Zhejiang University


ncbi_organism_name: Shewanella frigidimarina

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Rhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: dtu national food institute


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Salmonella sp. NW1

ncbi_submitter: Sichuan University


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_organism_name: Fusicatenibacter sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: China: Anhui; Wuhu

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Region Zealand


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: New Zealand: Northland

ncbi_submitter: Massey University


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: East China Normal University


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: Body fluid from infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_assembly_name: Rumen uncultured genome RUG10273

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Singapore

ncbi_isolation_source: Pus

ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Portugal: Caima

ncbi_isolation_source: river water

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_submitter: University of central Florida


ncbi_country: Israel

ncbi_isolation_source: milking waiting area

ncbi_submitter: Heriot-Watt University


ncbi_isolation_source: gastric fluid

ncbi_organism_name: Helicobacter cetorum

ncbi_submitter: University of Antwerp, Belgium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 2

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: India: Vellore

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: CMC, Vellore


ncbi_organism_name: Photorhabdus kleinii

ncbi_submitter: University of Neuchatel


ncbi_country: Ireland

ncbi_isolation_source: Drain; entrance

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Shewanella sp.

ncbi_submitter: The Ohio State University


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_organism_name: Vibrio harveyi

ncbi_strain_identifiers: Serfr

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Chlamydia trachomatis RC-F/69

ncbi_submitter: Oregon State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: South Carolina

ncbi_organism_name: Candidatus Enterococcus leclercqii

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: freshwater MAG --- KTt_bin-1619

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylobacter sp.

ncbi_submitter: BILS


ncbi_country: USA: New York

ncbi_isolation_source: cystic fibrosis isolate

ncbi_submitter: AstraZeneca


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Haemophilus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: IMG-taxon 2599185169 annotated assembly

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 642044 4-1


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: Rumen uncultured genome RUG12500

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Australia: Five Islands

ncbi_organism_name: Escherichia coli

ncbi_submitter: OUTBREAK


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Rothia mucilaginosa


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolate: AOP19_D1_surf _bin _12

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: AOP19_D1_surf _bin _12

ncbi_submitter: Genoscope


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermodesulfatator sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Toho University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Torino

ncbi_isolation_source: Mozzarella

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Universita di Torino


ncbi_organism_name: Atlantibacter hermannii


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Antarctica: Fumarole Bay; Deception Island

ncbi_isolation_source: sediment

ncbi_organism_name: Anoxybacillus sp. LAT_35

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Walailak University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__environmental samples;s__uncultured candidatus Brocadiaceae bacterium


ncbi_country: USA: Texas; Austin

ncbi_isolation_source: parking lot island in grocery store parking lot

ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: Ouachita Baptist University


ncbi_country: China

ncbi_isolation_source: seawater surrounding coral Acropora digitifera under normal condition

ncbi_organism_name: Aquisalinus sp.

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: Prevotella disiens

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 1111000175

ncbi_submitter: Broad Institute


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Candidatus Poriferihabitaceae bacterium


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Anaerobutyricum hallii


ncbi_country: China: Anhui; Maanshan

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_country: Portugal: Praia da Memoria

ncbi_isolation_source: marine sponge

ncbi_organism_name: Vibrio sp. OPT20

ncbi_submitter: Interdisciplinary Centre of Marine and Environmental Research


ncbi_organism_name: Clostridium beijerinckii

ncbi_strain_identifiers: DSM 53

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Bacillus sp. FSL R5-0585

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R5-0585


ncbi_country: South Korea

ncbi_isolation_source: nuts

ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: FDA/CFSAN


ncbi_strain_identifiers: ATCC 9263

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky;x__Salmonella enterica subsp. enterica serovar Kentucky str. ATCC 9263


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter caecicola

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan: Okinawa Trough

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: United Kingdom: London

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_strain_identifiers: Lorraine

ncbi_submitter: Genoscope


ncbi_country: Portugal

ncbi_isolation_source: patient

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Staphylococcus aureus


ncbi_country: Republic of the Congo

ncbi_isolation_source: cassava leaf

ncbi_organism_name: Corynebacterium sp. J010B-136

ncbi_submitter: Max Rubner-Institut


ncbi_country: France

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: ANSES


ncbi_organism_name: Hahella sp. HNIBRBA332

ncbi_submitter: Honam National Institute of Biological Resources


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Denmark: Hilleroed; Garden; pile of trees and branches

ncbi_organism_name: Streptomyces sp. NBC_00424

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Beijing

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China CDC


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0415

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: California

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: USDA


ncbi_isolation_source: Fruits and Vegetables

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Rehman Medical Institute Peshawar, Pakistan


ncbi_country: Serbia

ncbi_isolation_source: tracheal aspirate

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_country: China: Hangzhou

ncbi_submitter: Zhejiang University


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_country: USA: Seymour; Indiana

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium sp. K35

ncbi_submitter: Central Michigan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: China

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Caccousia stercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Caccousia;s__Candidatus Caccousia stercoris


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0229R

ncbi_submitter: Broad Institute


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Mycobacterium sp.


ncbi_country: USA: Bethesda; MD

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_country: USA: Maine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Maine at Presque Isle


ncbi_country: Colombia: Bogota

ncbi_isolation_source: urine


ncbi_country: USA: New York

ncbi_isolation_source: stool

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EBI


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Methylomagnum ishizawai

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Spain: Madrid

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_country: France: Ile-de-France

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Poland: Poznan

ncbi_isolation_source: urea

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: National Medicines Institute


ncbi_country: Belarus: Minsk

ncbi_isolation_source: Lupinus sp.

ncbi_organism_name: Buchnera aphidicola (Macrosiphum albifrons)

ncbi_submitter: Belarusian State University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Enterobacter cancerogenus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA4646

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4646


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Clemson University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Kiritimatiellales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_isolation_source: unknown


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Munster Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Salmonella enterica

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Pectobacterium cacticida

ncbi_submitter: University of Gdansk


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC057412

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hangzhou

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: Broad Institute


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Arcobacter nitrofigilis

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Bacillus sp. FSL L8-0315

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL L8-0315


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Canada: Guelph

ncbi_isolation_source: Early seed surface sterilization rinse; including the placenta and fruit pulp tissues

ncbi_organism_name: Enterobacteriaceae bacterium EKM102V

ncbi_submitter: University of Guelph


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio tarriae

ncbi_submitter: CDC


ncbi_organism_name: uncultured Bilophila sp.


ncbi_organism_name: Actinomyces israelii

ncbi_submitter: The University of Hong Kong


ncbi_country: Madagascar

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_country: China: Sichuan

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Actinomycosis

ncbi_organism_name: Capnocytophaga ochracea

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pandoraea pneumonica

ncbi_submitter: Hainan General Hospital


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Rothia dentocariosa

ncbi_submitter: The Ohio State University College of Dentistry


ncbi_organism_name: Salmonella sp. 741265051_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bradyrhizobium sp. STM 3566

ncbi_submitter: IRD


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC