ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Chile: Santiago

ncbi_genome_representation: full

ncbi_isolation_source: Ileum biopsy

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_assembly_level: Contig

ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


gtdb_representative: t

ncbi_country: Netherlands

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: disinfectant-free drinking water; site 5

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Glasgow


ncbi_submitter: Laboratory of Metabolic Biophysics and Applied Pharmacology (LR12ES02),


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: UIUC


ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Massilia paldalensis

ncbi_refseq_category: reference genome

ncbi_submitter: Kyonggi University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_assembly_level: Complete Genome

ncbi_submitter: Universite Laval


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_organism_name: Alistipes putredinis


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: metagenome

ncbi_organism_name: Clostridiales bacterium UBA1390

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Arenibacter antarcticus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Olsenella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__environmental samples;s__uncultured Latescibacterota bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Veillonella caviae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Mobile Bay

ncbi_isolation_source: water

ncbi_organism_name: Pseudoalteromonas sp. BMB

ncbi_strain_identifiers: BMB

ncbi_submitter: Auburn University


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Agathobacter rectalis


ncbi_submitter: University of Verona, Italy


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Palacky University Olomouc


ncbi_country: Russia: Lake Khadyn; Tuva Upper Yenisey Region

ncbi_isolation_source: bottom sediments

ncbi_organism_name: Anaerobacillus alkalilacustris

ncbi_submitter: University of Manchester


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1576

ncbi_submitter: Broad Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Shepparton

ncbi_isolation_source: freshwater

ncbi_organism_name: Microcystis aeruginosa CS-558/01A06

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: China: Fujian

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Streptomyces sp. JS01

ncbi_submitter: Xiamen university


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA1978

ncbi_submitter: University of Queensland


ncbi_organism_name: Terricaulis sp.

ncbi_submitter: Radboud University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminobacter sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Canada

ncbi_isolation_source: female manure

ncbi_organism_name: Aliarcobacter lanthieri

ncbi_submitter: Ghent University


ncbi_country: Australia

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NRRL S-340

ncbi_strain_identifiers: NRRL S-340

ncbi_submitter: University of Illinois


ncbi_isolate: AOP1_C1_surf _bin _11

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP1_C1_surf _bin _11

ncbi_submitter: Genoscope


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;x__unclassified Flavobacteriia;s__Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 2184

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_isolation_source: Uterus

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Frisingicoccus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shandong

ncbi_submitter: Shandong University


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Shenzhen

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: BGI


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnospiraceae bacterium UBA7255

ncbi_submitter: University of Queensland


ncbi_country: China: Qinghai Province

ncbi_organism_name: Cellulomonas fengjieae

ncbi_submitter: China CDC


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. D-M19

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Negativibacillus sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__environmental samples;s__uncultured Negativibacillus sp.


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: China: Qinyuan City; Guangdong Province

ncbi_submitter: SouthChina Agriculture University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Thalassospira sp. CH_XMU1420-2

ncbi_submitter: Third Institute of Oceanography


ncbi_organism_name: Methanobrevibacter smithii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Anaerovoracaceae bacterium


ncbi_country: South Africa: King Dinuzulu Hospital

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0069

ncbi_submitter: Broad Institute


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: respiratory

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Pittsburgh


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-6545

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: In-house environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: environment of equine clinic

ncbi_submitter: University of Veterinary Sciences


ncbi_country: United Kingdom: England

ncbi_isolation_source: Cecal contents

ncbi_organism_name: Ruminococcaceae bacterium UBA1816


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Henan

ncbi_isolation_source: nasal swab

ncbi_submitter: China Agriculture University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: culture

ncbi_submitter: University of Zurich


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Nanjing university


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Streptomyces lavendulae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: Pukyong national university


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Stirling


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Trinickia caryophylli

ncbi_strain_identifiers: ICMP 512

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas at Austin


ncbi_country: India: Unique Biotech Limited; Hyderabad

ncbi_isolation_source: soil sample

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Unique Biotech Limited


ncbi_organism_name: Mucilaginibacter sp. Mucisp84

ncbi_submitter: North Carolina State University


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: EPFL


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: newbler

ncbi_country: Sudan: Khartoum

ncbi_isolation_source: abscess

ncbi_submitter: urmite

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. anaerobius ST1464


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Lactobacillus johnsonii


ncbi_assembly_name: Salmonella enterica CVM N43459 v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Chicken Wings

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Subdoligranulum variabile

ncbi_submitter: University of Alberta


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_submitter: Drexel


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom:Truro

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Lactococcus fujiensis JCM 16395

ncbi_submitter: The University of Tokyo


ncbi_country: USA: OR

ncbi_isolation_source: watering wand in a greenhouse

ncbi_organism_name: Rhodococcus sp. WWJCD1

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. WWJCD1


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_assembly_level: Chromosome

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China

ncbi_submitter: Shanghai Children's Hospital


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Porphyromonas sp.


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; time zero; i.e. control

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Australian Institute of Marine Science


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: United Kingdom:Denbigshire

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: Air filter debris

ncbi_organism_name: Bacillus aerophilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: unknown


ncbi_submitter: University of Bern


ncbi_organism_name: Staphylococcus aureus VET0809S

ncbi_submitter: Broad Institute


ncbi_country: Canada

ncbi_isolation_source: Isolated from contaminated platelet concentrates

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Health Canada


ncbi_country: USA: Connecticut

ncbi_isolation_source: leg

ncbi_organism_name: Thiopseudomonas alkaliphila

ncbi_submitter: CDC


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylocystaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_country: Netherlands

ncbi_isolation_source: Wall biofilm

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Radboud University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Hong Kong

ncbi_isolation_source: enriched activated sludge

ncbi_organism_name: Pimelobacter sp. 30-1

ncbi_submitter: The University of Hong Kong


ncbi_country: Russia: Moscow region

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: SRCAMB


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Jersey

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Bath


ncbi_organism_name: uncultured Ilumatobacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Colombia: Bogota

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: jejunum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Corynebacterium flavescens


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Terribacillus saccharophilus

ncbi_submitter: Bielefeld University


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chitinophagaceae bacterium UBA6666

ncbi_submitter: University of Queensland


ncbi_country: South Korea: Wanju

ncbi_isolation_source: Lettuce

ncbi_organism_name: Aeromonas sp. V90_14

ncbi_submitter: Max Rubner-Institut


ncbi_country: Singapore

ncbi_isolation_source: air

ncbi_organism_name: Rhodococcus sp. SGAir0479

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. SGAir0479


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Promineifilum sp.

ncbi_submitter: SciBear LLC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Promineifilum;x__unclassified Candidatus Promineifilum;s__Promineifilum sp.


ncbi_country: Finland

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Nocardioides sp. J9

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_isolation_source: freshwater from Taihu Lake

ncbi_organism_name: Microcystis aeruginosa TAIHU98

ncbi_submitter: Institute of Hydrobiology, Chinese Academy of Sciences


ncbi_isolation_source: public transports

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Breznakia sp. PFB1-11


ncbi_country: USA: Virginia

ncbi_isolation_source: white-tailed deer feces

ncbi_organism_name: Pseudomonas sp. 7P_10.2_Bac1

ncbi_submitter: Washington University in St. Louis


ncbi_submitter: Proteon Pharmaceuticals


ncbi_organism_name: Vibrio sp. J383

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Argentina: Tandil

ncbi_isolation_source: feces

ncbi_submitter: Universidad de Chile


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W60784

ncbi_submitter: Broad Institute


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Verrucomicrobiota bacterium


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Prevotella sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Simplicispira sp.


ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_organism_name: Bianqueaceae bacterium


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Agathobacter rectalis


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Demequinaceae bacterium


ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridium sp.

ncbi_submitter: AAFC


ncbi_country: USA: California

ncbi_isolation_source: lung swab

ncbi_organism_name: Mycoplasma sp. CSL10137

ncbi_submitter: US FDA


ncbi_organism_name: Proteus mirabilis


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Columbia University


ncbi_country: Comoros

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National University of Singapore


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Avimonas faecium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Avimonas;s__Candidatus Avimonas faecium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avimonas;s__Candidatus Avimonas faecium


ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Erwinia sp. BNK-25

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Bangladesh

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Russia

ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_country: Netherlands

ncbi_isolation_source: grass shoots

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wageningen University & Research


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Swansea University


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_isolation_source: Faeces


ncbi_assembly_name: IMG-taxon 2619619644 annotated assembly

ncbi_organism_name: Micromonospora nigra

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae 646_1568

ncbi_submitter: JCVI


ncbi_submitter: King Abdulaziz University


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Philadelpia

ncbi_isolation_source: Intestinal contents

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: wound scalp

ncbi_organism_name: Pseudomonas sp. HMSC067G02

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: Turkey: Kayseri

ncbi_isolation_source: catheter

ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: Erciyes University


ncbi_organism_name: Oceanobacillus iheyensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2654588144 annotated assembly

ncbi_organism_name: Enterocloster clostridioformis


ncbi_organism_name: Corynebacterium sp. KPL3773

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_assembly_name: Rumen uncultured genome RUG13978

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium coryneforme;x__Bifidobacterium [indicum] DSM 20214 = LMG 11587


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: Russia: Sakha (Yakutia)

ncbi_isolation_source: sputum from COVID-19 patient

ncbi_submitter: Federal State Budgetary Scientific Institution "Institute of Experimental Medicine"


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: WI

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_isolation_source: lake water

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Streptomyces mooreae

ncbi_submitter: Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_organism_name: Raoultella sp. BIGb0138

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Cepheid


ncbi_country: India: Umiam

ncbi_isolation_source: Retail chicken

ncbi_organism_name: Escherichia albertii

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Mahidol University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Actinomycetaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Puerto Rico: HATILLO

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides clarus CAG:160

ncbi_submitter: DTU


ncbi_country: Philippines

ncbi_isolation_source: dessicated coconut

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cubana;x__Salmonella enterica subsp. enterica serovar Cubana str. CFSAN001083


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: China: Guangzhou

ncbi_isolation_source: tryptic soy broth

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: South China University of Technology


ncbi_country: China: Guangdong

ncbi_isolation_source: air medium

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Mesorhizobium sp. M0983

ncbi_submitter: Washington State University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Roseibium alexandrii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Shewanella aquimarina

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC088190

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Teagasc


ncbi_submitter: Global Health Research Unit

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_organism_name: Salmonella sp. NW62

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with potato starch

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Caldilineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Kiritimatiellota bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Kiritimatiellota;x__environmental samples;s__uncultured Kiritimatiellota bacterium


ncbi_isolate: AOP24_D1_surf _bin _6

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP24_D1_surf _bin _6

ncbi_submitter: Genoscope


ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Aerococcus sanguinicola

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_assembly_name: Rumen uncultured genome RUG13397

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Actinomycetospora sp. NBC_00405

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Corynebacterium durum

ncbi_submitter: EMG


ncbi_country: China: Nanchang Jiangxi Province

ncbi_isolation_source: droppings

ncbi_organism_name: Corynebacterium poyangense

ncbi_submitter: China CDC


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_country: USA: PA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Turkey: Samsun

ncbi_organism_name: Micromonospora sp. C41

ncbi_submitter: Ondokuz Mayis University


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: breast milk

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: IGA Technology Services Srl


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: USA: South Dakota

ncbi_isolation_source: Bioreactor

ncbi_organism_name: Arthrobacter sp. TPD3018

ncbi_submitter: MR DNA


ncbi_country: Austria: Arnoldstein

ncbi_isolation_source: rhizosphere of Salix caprea

ncbi_organism_name: Agromyces aureus

ncbi_submitter: Austrian Institute of Technology


ncbi_country: USA: MA

ncbi_isolation_source: milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Flexilinea sp.


ncbi_country: Canada: Smith s Cove; Nova Scotia

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: France: Paris

ncbi_isolation_source: water cooling tower

ncbi_organism_name: Legionella parisiensis

ncbi_submitter: Goethe University


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Florida


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Wolbachia endosymbiont of Drosophila tristis

ncbi_submitter: University of Montana


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Aeriscardovia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Pakistan

ncbi_isolation_source: water

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Johannesburg


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Antarctica

ncbi_organism_name: Corynebacterium meridianum

ncbi_submitter: Masaryk University


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: disinfectant-free drinking water; site 4

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: University of Glasgow


ncbi_country: USA

ncbi_isolation_source: Retail chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: USDA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_country: China: Guangxi Zhuang Autonomous Region

ncbi_isolation_source: bark

ncbi_organism_name: Microbacterium excoecariae

ncbi_submitter: Research Center for Medicine & Biology


ncbi_country: China: Taizhou

ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia sp. R8

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfurospirillaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B237;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: uncultured Parolsenella sp.


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Health


ncbi_country: USA: California; Eel River; South Fork Eel River near Piercy

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Germany

ncbi_isolation_source: meat

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;x__Eubacteriaceae incertae sedis;g__Candidatus Allocopromorpha;s__Candidatus Allocopromorpha excrementigallinarum


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Streptomyces sp. NPDC057684

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Escherichia coli

ncbi_submitter: Mahidol University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: University of Pittsburgh


ncbi_country: Kyrgyzstan

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Scientific Research Antiplague Institute 'Microbe'


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: China: Zhejiang

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: USA: Chicago

ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: University of Chicago


ncbi_country: Brazil: Chapada Diamantina

ncbi_isolation_source: solo

ncbi_organism_name: Klebsiella sp. P1CD1

ncbi_submitter: UFBA


ncbi_country: USA: Iowa

ncbi_isolation_source: pericardium

ncbi_organism_name: Streptococcus suis

ncbi_submitter: USDA-ARS


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-PR

ncbi_organism_name: Sphingobium sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Nepal: Sukraraj

ncbi_isolation_source: stool

ncbi_submitter: Armed Forces Research Institute of Medical Sciences (AFRIMS)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Clemson University


ncbi_country: Netherlands

ncbi_isolation_source: Bovine milk

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Radboudumc


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Oxford


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Aarhus University


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_assembly_name: freshwater MAG --- LinL1_bin-0432

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: MER 165

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_assembly_name: Tenacibaculum vairaonense strain 190524A02bT

ncbi_organism_name: Tenacibaculum vairaonense

ncbi_submitter: INRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Yekaterinburg

ncbi_isolation_source: patient s blood plasma

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Central Research Institute for Epidemiology


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_name: freshwater MAG --- B4coas_bin-1876

ncbi_isolation_source: pond

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Streptomyces arboris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudochrobactrum kiredjianiae

ncbi_submitter: Animal and Plant Health Agency


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: USDA


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: uncultured Gaiellaceae bacterium


ncbi_organism_name: Adhaeribacter terreus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Amnibacterium sp.

ncbi_submitter: CAU


ncbi_country: China

ncbi_isolation_source: Sepsis

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Anaeromyxobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_country: Australia: Melbourne

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_country: Russia: Kamchatka; East Thermal Field of the Uzon Caldera

ncbi_organism_name: Caldalkalibacillus uzonensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: USA: White Oak Rive Estuary; North Carolina

ncbi_isolation_source: Sulfate-rich zone estuary sediments 8-12 cm

ncbi_organism_name: Gammaproteobacteria bacterium SG8_30

ncbi_submitter: University of Texas


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Palmer LTER


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_country: Switzerland

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Central China Fuwai Hospital of Zhengzhou University

ncbi_isolation_source: Ascitic fluid from patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: YangZhou university


ncbi_organism_name: Polaribacter sejongensis

ncbi_submitter: Cong Sun Research Group


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Actinotalea solisilvae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Hoylesella timonensis

ncbi_submitter: EMG


ncbi_country: Mexico: Baja California

ncbi_isolation_source: Bronchial fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Hafnia sp.

ncbi_submitter: China Agricultural University


ncbi_country: India:Lahaul & Spiti Valley; Himachal Pradesh

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Halotalea alkalilenta

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Aggregatilinea sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Russia: Novosibirsk

ncbi_isolation_source: chicken food

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality (FGBU VGNKI)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_isolation_source: skin; soft tissue infection


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Belgium

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P10 CL A14

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_assembly_name: De novo assembly of KCRI isolate R0004_259C

ncbi_isolation_source: wound swab

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: China: Bengbu

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_submitter: University of Wisconsin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pectobacteriaceae;g__Pectobacterium;s__Pectobacterium carotovorum;sb__Pectobacterium carotovorum subsp. carotovorum;x__Pectobacterium carotovorum subsp. carotovorum WPP14


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Dysosmobacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Bulgaria: Silistra

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: BUL 31

ncbi_submitter: Bundeswehr


ncbi_organism_name: Phocaeicola coprocola DSM 17136

ncbi_submitter: US Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola coprocola;x__Phocaeicola coprocola DSM 17136


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Clostridium beijerinckii

ncbi_strain_identifiers: NRRL B-593

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pennsylvania


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Cardiff University


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Gemmiger qucibialis


ncbi_country: Netherlands

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Yersinia alsatica

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_isolation_source: chlorinated drinking water; site 1

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: University of Glasgow


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Kosovo

ncbi_isolation_source: stray dog fecal sample


ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Erasmus University Medical Centre, Rotterdam, the Netherlands


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: South Korea

ncbi_submitter: Yonsei University College of Medicine


ncbi_country: Thailand: Lat Phrao

ncbi_isolation_source: fresh seafood sold at markets and supermarkets located in Bangkok; Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Dyadobacter sp. BE34

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Mexico: California Gulf

ncbi_isolation_source: Sea sediment

ncbi_organism_name: Micromonospora sp. CV4

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Atlantibacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolate: CB3 bin21

ncbi_organism_name: Synergistales bacterium

ncbi_strain_identifiers: CB3 bin21

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Kyushu University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Kyungpook National University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Faecalitalea sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Candidatus Enterosoma sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Enterosoma;x__unclassified Candidatus Enterosoma;s__Candidatus Enterosoma sp.


ncbi_country: France: Bordeaux

ncbi_isolation_source: Stool

ncbi_organism_name: Escherichia coli O104:H4 str. Ec11-4984

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. Ec11-4984


ncbi_isolation_source: Retail raw chicken

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Candidatus Midichloria sp.

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Midichloria;x__unclassified Candidatus Midichloria;s__Candidatus Midichloria sp.


ncbi_organism_name: Leptospira interrogans serovar Icterohaemorrhagiae

ncbi_submitter: Research and Production Center for Microbiology and Virology


ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Paenibacillus lautus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen University


ncbi_organism_name: Salmonella sp. NW428

ncbi_submitter: Sichuan University


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: New York Green Lakes State Park

ncbi_isolation_source: biofilm from a meromictic lake

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: University of Minnesota


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: IMG-taxon 2599185160 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFPP25

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_submitter: College of Veterinary Science, Mamnoor, Warangal, PVNR TVU, India


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: Bbla

ncbi_organism_name: Candidatus Babela massiliensis

ncbi_submitter: ebi

ncbi_taxonomy: d__Bacteria;p__;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Babeliaceae;g__Candidatus Babela;s__Candidatus Babela massiliensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Babeliaceae;g__Candidatus Babela;s__Candidatus Babela massiliensis


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Norway: Viken

ncbi_isolation_source: Silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Peking Union Medical College Hospital


ncbi_isolation_source: cold seep

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: China: Hunan

ncbi_organism_name: Serratia oryzae

ncbi_submitter: Chinese Academy of agricultural Sciences(CAAS)


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV237

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-342

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-342


ncbi_country: USA

ncbi_submitter: USDA


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Lebanon

ncbi_isolation_source: Red wine

ncbi_organism_name: Oenococcus oeni IOEB_L18_3

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_assembly_name: Rumen uncultured genome RUG10323

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Ghana: Accra

ncbi_isolation_source: Livestock farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: Nanyang Technological University


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-G08

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolate: conventional rainbow trout larvae

ncbi_isolation_source: rainbow trout larvae (Oncorhynchus mykiss)

ncbi_organism_name: Delftia acidovorans

ncbi_strain_identifiers: conventional rainbow trout larvae

ncbi_submitter: INSTITUT PASTEUR


ncbi_assembly_name: IMG-taxon 2708742416 annotated assembly

ncbi_organism_name: Rhizobium sp. RU20A

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Chloroflexaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_organism_name: Acinetobacter faecalis

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Institute of Agrobiological Sciences, NARO


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AM49-8

ncbi_submitter: BGI


ncbi_country: Colombia

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Slovakia: Kosice

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Molecular Biology SAS


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Segatella copri

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG14263

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Algeria

ncbi_submitter: IHU


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0003

ncbi_submitter: Broad Institute


ncbi_country: Gambia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Bangladesh

ncbi_organism_name: Campylobacter coli


ncbi_country: Peru:Pacasmayo; Guadalupe; Mariscal Castilla

ncbi_organism_name: Yersinia pestis PY-90

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Finegoldia magna

ncbi_submitter: University of California, Berkeley


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Infection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_country: USA: NY

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus DAR1082


ncbi_country: Spain: Madrid

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Virgen Macarena


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Xanthomonas sp. CPBF 1567 hybrid assembly

ncbi_isolate: Xanthomonas sp. CPBF 1567

ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: Xanthomonas sp. CPBF 1567

ncbi_submitter: CIBIO-Inbio


ncbi_country: Canada: Indian Farm Creek; Alberta

ncbi_isolation_source: water

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Denmark

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Ruminococcoides intestinihominis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Thailand: Pattani

ncbi_isolation_source: sputum

ncbi_submitter: Prince of Songkla University


ncbi_country: Switzerland

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: New Zealand: Canterbury

ncbi_isolation_source: Shellfish

ncbi_submitter: Lincoln University


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Pomona;x__Leptospira interrogans serovar Pomona str. 2006006968


ncbi_country: Australia

ncbi_isolation_source: wound swab

ncbi_submitter: Monash University


ncbi_country: Canada: Ontario

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Copenhagen


ncbi_assembly_name: freshwater MAG --- A1_bin-794

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - thermal hydrolysis pre-treatment sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Faecalibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Marismas Odiel; Huelva

ncbi_isolation_source: saline soil

ncbi_organism_name: Pseudidiomarina terrestris

ncbi_submitter: University of Sevilla, Spain


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: soap-making tank of a household product

ncbi_organism_name: Halomonas alkalicola

ncbi_strain_identifiers: CICC 11012s

ncbi_submitter: China National Research Institute of Food and Fermentation Industries


ncbi_organism_name: Escherichia coli W

ncbi_strain_identifiers: W

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: China: YunNan

ncbi_isolation_source: field

ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Guangxi University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Brucella endophytica

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__unclassified Candidatus Marinamargulisbacteria;s__Candidatus Marinamargulisbacteria bacterium


ncbi_organism_name: Epibacterium sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces griseoluteus


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Mogibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Candidatus Midichloria sp.

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Polynucleobacter sp.


ncbi_submitter: CEITEC VETUNI


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Edwardsiella sp. A.80236

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University, School of Medicine, Hangzhou, China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Hafniaceae;g__Edwardsiella;x__unclassified Edwardsiella (in: enterobacteria);s__Edwardsiella sp. A.80236


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Research Group on Difficult to Diagnose and Treat Infections. Institute for Health Research Aragon


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ares Genetics


ncbi_organism_name: uncultured bacterium


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter devanensis

ncbi_submitter: University of Aberdeen


ncbi_country: USA: Boston; MA; USA

ncbi_organism_name: Staphylococcus aureus M1300

ncbi_submitter: Broad Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Germany: Botanic Garden Hamburg

ncbi_isolation_source: water from watering pot

ncbi_organism_name: Janthinobacterium sp. HH01

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: USA: New Hampshire

ncbi_isolation_source: ascending colon aspirate

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: food processing facility

ncbi_organism_name: Microbacteriaceae bacterium PS02068

ncbi_submitter: Penn State University


ncbi_country: Saudi Arabia: Makkah

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umm Al-Qura University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Colombia: Pereira

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Roseovarius phycicola

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Klebsiella sp. 123751

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: China: Zhejiang


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_submitter: Emory University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: KY

ncbi_isolation_source: soil

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University