ncbi_isolation_source: cold seep

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: USA: New Orleans; Plaquemines; LA

ncbi_genome_representation: full

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia sp. LA-2-3-30-S1-D2

ncbi_submitter: Northern Arizona University


ncbi_assembly_level: Contig

ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolate: Helicobacter suis

ncbi_isolation_source: Rhesus macaque stomach

ncbi_organism_name: Helicobacter suis

ncbi_strain_identifiers: Helicobacter suis;HSMm R04052c

ncbi_submitter: GHENT UNIVERSITY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Verona, Italy


ncbi_assembly_level: Chromosome

ncbi_country: China: Xinjiang province

ncbi_organism_name: Halomonas sp. PA5

ncbi_submitter: zhejiang university


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_country: Brazil: Carolina; Maranhao

ncbi_genome_category: derived from metagenome

ncbi_isolate: Desfum bin_10_GBBB08

ncbi_isolation_source: non-axenic (unialgal) sample in BG-11 medium

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_strain_identifiers: Desfum bin_10_GBBB08

ncbi_submitter: Instituto de Quimica


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: control oxisol soil plot 6

ncbi_submitter: Arizona State University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Barnesiella viscericola

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: DOE JGI


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_submitter: University of Melbourne


ncbi_country: Nigeria

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: DC

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: Chryseobacterium carnipullorum

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Canoe Beach; Nahant; MA

ncbi_organism_name: Shimia thalassica

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Firmicutes bacterium AM55-24TS

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AM55-24TS


ncbi_country: India: NewDelhi

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: France: Lille

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: USA

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: metabat2_pooled_hifiasm.124 MAG

ncbi_organism_name: Collinsella ihumii

ncbi_strain_identifiers: metabat2_pooled_hifiasm.124 MAG

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Wound secretion

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: cecal sample

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: Animal and Plant Health Agency


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Italy

ncbi_isolation_source: guts

ncbi_organism_name: Aureimonas altamirensis

ncbi_submitter: University of Turin


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: L-formLTE

ncbi_submitter: Leiden University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Calgary


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Streptacidiphilus cavernicola

ncbi_submitter: BioPS Co., Ltd.


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Nitrospirales bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM3164

ncbi_submitter: IGS


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin33

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: LAG bin33

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dialister hominis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Limosilactobacillus fermentum NB-22

ncbi_submitter: Pharmbacter JSC


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: AAFC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_organism_name: Rhodococcus qingshengii

ncbi_refseq_category: reference genome

ncbi_submitter: Department of Radiation-Applied Biology Research, Takasaki Advanced Radiation Research Institute, Quantum Beam Science Research Directorate, National Institutes for Quantum and Radiological Science and Technology


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: water from hydrothermal vent

ncbi_organism_name: Thermosipho melanesiensis

ncbi_submitter: University of Oslo


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter apodemus


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Niveispirillum sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Pseudonocardiales bacterium


ncbi_assembly_name: Campylobacter coli CVM N4517 v1.0

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: CVM N4517

ncbi_submitter: FDA


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium bangladeshense

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: abscess

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: France: Limoges

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Enterobacterales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_country: Argentina

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Tidjanibacter sp.


ncbi_isolation_source: rhizosphere soil culture M44

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Florida; Stan Blum

ncbi_organism_name: Pseudonocardia sp. WMMC193

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Nannocystis sp.

ncbi_submitter: Nanjing University


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Swansea University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: groundwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Toombs Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium ADurb.Bin151


ncbi_country: France

ncbi_isolation_source: infant

ncbi_organism_name: Escherichia coli DEC2D

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Psychrobacter sp. Choline-02u-9

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospira sp. UBA2821

ncbi_submitter: University of Queensland


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (MCD) from International Space Station

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: J.Craig Venter Institute


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Ruegeria sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Companilactobacillus sp.


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Malaysia

ncbi_isolation_source: Poultry

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Malaya


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Oscillochloris sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_isolation_source: Infant feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Zhejiang Gongshang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 3 20 to 25cm

ncbi_organism_name: Altibacter sp.

ncbi_submitter: Northeastern University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Helicobacter pylori SA194C

ncbi_submitter: MHH


ncbi_country: South Korea: Ulsan

ncbi_isolation_source: Pericardial fluid

ncbi_organism_name: Morganella morganii

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology


ncbi_country: USA: Florida

ncbi_isolation_source: Swine feces

ncbi_submitter: University of Florida


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University Hong Kong


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: Iran: Karaj

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_country: Italy

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Idiomarina abyssalis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Corynebacterium urealyticum DSM 7109

ncbi_submitter: Bielefeld Univ


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Sulfurospirillum sp.

ncbi_submitter: Shanghai Ocean University


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Zhongshania aquimaris

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptomyces stackebrandtii

ncbi_submitter: Leibniz Institute DSMZ German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany


ncbi_isolation_source: rat gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Queensland


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0358

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Daesang


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang Cancer Hospital


ncbi_organism_name: Cardiobacterium valvarum

ncbi_strain_identifiers: ATCC BAA-694

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: Bartonella sp. AP122HLJHH

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: University of Bern


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Sediminibacterium sp.


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC058701


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of British Columbia


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: Rosemount; Minnesota

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: Chile: Santiago

ncbi_isolation_source: blood

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: Infant 1 DOL 18 gut

ncbi_organism_name: Phocaeicola vulgatus


ncbi_assembly_name: freshwater MAG --- MJ120716B_bin-258

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Barcelona


ncbi_country: Canada: Saint-Blaise

ncbi_isolation_source: infected lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_submitter: Colorado State University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Zodletone Spring; Oklahoma

ncbi_isolation_source: Zodletone Spring

ncbi_organism_name: Desulfomicrobium sp. ZS1

ncbi_submitter: University of Tennessee Knoxville


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Bacteroides ihuae

ncbi_submitter: URMITE


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: Central venous line

ncbi_submitter: unverisity medical center groningen


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: 2930PM;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Erythrobacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Alabama

ncbi_isolation_source: top soil

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0020

ncbi_submitter: Broad Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-412-A14

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 62

ncbi_strain_identifiers: CHS 62

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 62


ncbi_country: Russia: Saint-Petersburg

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_organism_name: Nitratireductor aquimarinus

ncbi_submitter: JNTUH


ncbi_isolation_source: Distal colon

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Oklahoma

ncbi_isolation_source: retail beef liver

ncbi_submitter: The University of Tulsa


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Department of Pharmacy, Shaoxing Hospital of Traditional Chinese Medicine Affiliated to Zhejiang Chi


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_assembly_name: freshwater MAG --- Umea1_bin-0343

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- Ja_bin-4803

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Seoul National University


ncbi_country: China:Maotai town

ncbi_isolation_source: High-temperature daqu

ncbi_organism_name: Lentibacillus daqui

ncbi_submitter: Jiangnan University


ncbi_submitter: The First Affiliated Hospital of Kunming Medical University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Paenibacillus sp. FSL R10-2782

ncbi_submitter: Penn State


ncbi_isolation_source: faecal

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: AGROSAVIA


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: ETH Zurich, DBSSE


ncbi_country: South Korea

ncbi_isolation_source: water

ncbi_organism_name: Janthinobacterium sp. SUN033

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: USA

ncbi_isolation_source: ground beef

ncbi_submitter: United States Department of Agriculture

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: China: Shandong; Jinan

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong university


ncbi_isolation_source: gastroscopic antral biopsy specimen

ncbi_organism_name: Helicobacter pylori wls-5-6

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Segatella copri

ncbi_submitter: Stanford University


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Australia: Brisbane

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: The University of Queensland


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: Sudan

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_country: Turkey

ncbi_isolation_source: Chicken meat

ncbi_submitter: Erciyes University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Lachnospiraceae bacterium GAM79

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_organism_name: Leadbettera azotonutricia ZAS-9

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Rothia sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: NATIONAL UNIVERSITY OF IRELAND, GALWAY


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0929

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: Hepatobiliary surgery

ncbi_submitter: Guangzhou Medical University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: Thiomonas sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_organism_name: Lacrimispora saccharolytica

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Marinobacterium aestuariivivens

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Congzhengia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chouaib Doukkali University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Altingen; artesian well

ncbi_isolation_source: enrichment culture sampled from a low-nitrate anoxic artesian well

ncbi_organism_name: Curvibacter sp.

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Megasphaera sp.


ncbi_country: Viet Nam

ncbi_isolation_source: The shrimp farm in North Vietnam

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany

ncbi_organism_name: Streptobacillus moniliformis

ncbi_submitter: Robert Koch Institute


ncbi_country: Japan

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Danny from private home

ncbi_organism_name: Blautia sp.

ncbi_submitter: AnimalBiome


ncbi_country: USA

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Thailand: Ubon Ratchathani

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: US Food and Drug Administration


ncbi_isolate: metabat2_pooled_metaflye.1390 MAG

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_strain_identifiers: metabat2_pooled_metaflye.1390 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Portugal: Algarve

ncbi_isolation_source: Sea cave

ncbi_organism_name: Vibrio sp. 1CM2L

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: University of Aberdeen


ncbi_submitter: University of Surrey


ncbi_strain_identifiers: ATCC BAA-960

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae;x__Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455


ncbi_organism_name: Thermovirgaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Coleofasciculus sp. F4-SAH-05

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: ENVIRONMENT

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: unhealthy carrier

ncbi_submitter: Fundacao Oswaldo Cruz


ncbi_country: New Zealand

ncbi_isolation_source: milk powder manufacturing plant

ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: New Zealand Genomics Ltd


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_isolation_source: liver

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: serrano pepper

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Rhizobiaceae group bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;x__environmental samples;s__uncultured Rhizobiaceae group bacterium


ncbi_country: USA: Annandale-On-Hudson; NY

ncbi_isolation_source: Sawkill stream below waste water outflow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Bard College


ncbi_isolation_source: clinical material

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Thermostichus sp. DG02_4_bins_136

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Sweden

ncbi_isolation_source: Human GI tract

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institutes of Health, Malaysia


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: skin

ncbi_strain_identifiers: ABFQO

ncbi_submitter: NHGRI/NIH


ncbi_submitter: University hospital Lubeck


ncbi_assembly_name: Rumen uncultured genome RUG237

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Douglas Channel

ncbi_isolation_source: dilbit-coated clay beads in seawater

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: National Research Council Canada


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1261

ncbi_submitter: Broad Institute


ncbi_organism_name: Ochrobactrum sp. MYb379

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: India: Punjab

ncbi_isolation_source: Foetal stomach content

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Madurai kamaraj university


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Pseudorhizobium flavum

ncbi_submitter: Dalian University of Technology


ncbi_organism_name: Termitinemataceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: [Clostridium] nexile

ncbi_submitter: BGI


ncbi_country: USA: NARMS

ncbi_isolation_source: chicken carcass rinsate

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: USDA-ARS-USNPRC-RRC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_country: Viet Nam

ncbi_isolation_source: Brassica juncea rhizosphere

ncbi_organism_name: Bacillus sp. CD3-1a

ncbi_submitter: ENDOBICA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CD3-1a


ncbi_country: USA: Livermore; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital


ncbi_assembly_name: Rumen uncultured genome RUG755

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Klebsiella sp. 76619

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Brazil

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli EPEC11

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: SCOPE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Devosia sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Gungdong

ncbi_organism_name: Staphylococcus sp. 29213

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Dorea sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile Y307


ncbi_isolation_source: rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: University of Queensland


ncbi_country: Russia:Stavropol Krai

ncbi_organism_name: Brucella melitensis

ncbi_submitter: N. F. Gamaleya Federal Research Center of Epidemiology and Microbiology, 123098 Moscow, Russia


ncbi_organism_name: Akkermansia sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pyramidobacter sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Minnesota


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: bacterium

ncbi_submitter: Northwestern University


ncbi_isolation_source: feces

ncbi_organism_name: Sutterellaceae bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 47:z4,z23:-


ncbi_country: Kenya

ncbi_organism_name: Prevotellaceae bacterium UBA4677


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: INS - Peru

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Alteromonadaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: BGI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: California

ncbi_isolation_source: abcess

ncbi_organism_name: Campylobacter pinnipediorum subsp. pinnipediorum

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Prochlorococcus sp.


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: CIRAD


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Parachlamydiaceae bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: Kazakhstan

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: IBCH RAN


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Lethbridge


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Hong Kong

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: HKU


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom: Northern Ireland

ncbi_isolation_source: meat environment

ncbi_submitter: Northumbria University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_country: China: Beijing

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Bacillus cereus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: EPFL


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidocella sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Eggerthella lenta


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: US Food and Drug Administration


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares swab

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_country: Canada: Ontario

ncbi_isolation_source: intake water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Zurich


ncbi_isolation_source: Caecum


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Limpopo

ncbi_isolation_source: Poultry Russian wors chicken

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Agricultural Research Council


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Palmer LTER

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Human feces

ncbi_organism_name: Dorea longicatena

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: vulva

ncbi_submitter: University of Florida


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_isolate: isolate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: EMG


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Anaerobiospirillum sp.


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: urine

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: fresh water

ncbi_organism_name: Ancylobacter sp. WKF20

ncbi_submitter: Wonkwang University


ncbi_country: China: Zhejiang

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Switzerland

ncbi_isolation_source: Deep Tissue

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_organism_name: Oscillospiraceae bacterium LCP21S3_E10

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Spain: Ribadeo; Galicia

ncbi_isolation_source: larvae

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_organism_name: Comamonas denitrificans

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Parolsenella catena


ncbi_organism_name: Mycoplasmopsis felis

ncbi_strain_identifiers: CO

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Xanthomonas cannabis


ncbi_country: China: Ningxia

ncbi_isolation_source: pig fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Curtobacterium sp. LFS082

ncbi_submitter: Rutgers University


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_submitter: AIT AUSTRIAN INSTITUTE OF TECHNOLOGY


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Streptomyces sp. NPDC004286

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcaceae bacterium UBA6353

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Psychroflexus sp.

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Streptomyces sp. NPDC005529


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Caccocola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Synergistota;c__Synergistia;o__Synergistales;f__Synergistaceae;x__Synergistaceae incertae sedis;g__Candidatus Caccocola;s__Candidatus Caccocola faecigallinarum


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Sanguibacter sp. Z1732

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Sulfurimonadaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC001777


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Cellulophaga baltica

ncbi_submitter: Yantai University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Streptomyces sp. NPDC056140


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Rickettsia aeschlimannii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Hawaii Institute of Marine Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_country: Brazil: Dourados

ncbi_submitter: LNCC


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Candidatus Tectimicrobiota bacterium

ncbi_submitter: RIKEN-BRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Candidatus Tectimicrobiota;s__Candidatus Tectimicrobiota bacterium


ncbi_country: Germany: Regensburg

ncbi_isolation_source: perianal skin [UBERON:0012336]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_country: Canada: Fort McMurray; Alberta

ncbi_isolation_source: biofilm

ncbi_organism_name: Verrucomicrobia bacterium UBA5207

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA5207


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_submitter: Oklahoma State University

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;x__unclassified Candidatus Fermentibacteraceae;s__Candidatus Fermentibacteraceae bacterium


ncbi_country: Poland: Gdansk

ncbi_isolation_source: anal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Leicester


ncbi_organism_name: Saccharofermentanales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Nebraska

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: shaoxing people's hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter muris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: New Zealand: Te Puke; Bay of Plenty

ncbi_submitter: The New Zealand Institute for Plant & Food Research Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae ICMP 19101


ncbi_country: USA: California

ncbi_isolation_source: rectal swab from healthy college student

ncbi_submitter: Santa Clara University


ncbi_country: China: Qinghai

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: USA: Georgia

ncbi_isolation_source: week A7 calf 167 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_country: USA: Philomath; Benton Co.; OR

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: USDA


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Below Boulder

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Duisburg-Essen


ncbi_country: Puerto Rico: Cabo Rojo Solar Salterns

ncbi_organism_name: Salinisphaera sp. Q1T1-3

ncbi_submitter: University of Puerto Rico-Mayaguez


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Chicago


ncbi_country: USA: Alabama

ncbi_isolation_source: top soil

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Sumerlaeia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;c__Candidatus Sumerlaeia;x__unclassified Sumerlaeia;s__Sumerlaeia bacterium


ncbi_country: USA: California; Eel River; Cedar Creek

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Schinkia azotoformans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Germany: Franconia; Thuengersheimer Ravensburg

ncbi_isolation_source: woody crown gall

ncbi_organism_name: Rhizobium sp. CG4

ncbi_submitter: University of Wuerzburg


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. RI_10P078


ncbi_organism_name: Bacillus subtilis


ncbi_country: USA: Daniel Boone National Forest; KY

ncbi_isolation_source: acid mine drainage site biofilm from limestone lined channel

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: University of California Davis


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: meat (thigh)

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Vibrio neptunius

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Dialister hominis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: marine shoal

ncbi_organism_name: Sulfuriroseicoccus oceanibius

ncbi_submitter: Shandong university


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Solobacterium sp.


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Marinobacter sp. MBR-99

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Liaocheng; Shangdong Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: AAFC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Duncaniella muris


ncbi_country: Peru: Lima

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Health Canada


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Limiplasma merdipullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma merdipullorum


ncbi_organism_name: Aeromonas jandaei

ncbi_strain_identifiers: SEL

ncbi_submitter: University of Georgia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Egypt

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_country: USA: Greene County; Ohio

ncbi_isolation_source: groundwater well (0.1 _m fraction)

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium Gr01-1014_77


ncbi_country: USA: MD

ncbi_isolation_source: ground beef

ncbi_organism_name: Staphylococcus aureus MRSA_CVMN27231PS

ncbi_submitter: US Food and Drug Administration, Center for Veterinary Medicine


ncbi_country: Spain: Asturias

ncbi_organism_name: Acidipropionibacterium jensenii

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: Australia: Perth

ncbi_isolation_source: nodules

ncbi_organism_name: Micromonospora sp. AMSO31t

ncbi_submitter: Universidad de Salamanca


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptosporangium sp. NBC_01639

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Monoglobus pectinilyticus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Lacipirellulaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Leptotrichia sp.


ncbi_country: USA: Lake Ontario

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Nitrotoga sp.

ncbi_submitter: University of Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp.


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_isolation_source: not provided

ncbi_organism_name: Lancefieldella rimae ATCC 49626


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Roseateles depolymerans


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Beijing Genome Institute


ncbi_country: China: Zhumadian

ncbi_isolation_source: ear

ncbi_organism_name: Microbispora triticiradicis

ncbi_submitter: School of life science

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Faecalibacterium duncaniae

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_organism_name: Streptococcus thoraltensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bradyrhizobium sp. 1200_D9_N1_1

ncbi_submitter: VIB


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Aquimarina sp. LLG6339-5

ncbi_submitter: Station Biologique de Roscoff


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4492

ncbi_submitter: University Hospital Regensburg


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_assembly_name: freshwater MAG --- A1_bin-912

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of Montreal


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Poland: Nowa Sol

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: National Medicines Institute


ncbi_country: China: Hainan province

ncbi_isolation_source: mangrove wetland ecosystem

ncbi_organism_name: Acinetobacter tandoii

ncbi_submitter: Hainan Normal University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Guangdong

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_country: Canada

ncbi_isolation_source: Soil

ncbi_organism_name: Myxococcus virescens

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: Rumen uncultured genome RUG489

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: coastal sediment

ncbi_organism_name: Thermodesulfovibrionia bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 139 (4-3192644)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 139 (4-3192644)


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: India: Kerala

ncbi_isolation_source: water

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: South Korea:Dokdo Island

ncbi_isolation_source: seawater

ncbi_organism_name: Shewanella dokdonensis

ncbi_submitter: Agricultural Bio-resources Research Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;s__Candidatus Nealsonbacteria bacterium RIFOXYB1_FULL_40_15


ncbi_assembly_name: freshwater MAG --- Loc090519-6m_bin-0751

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: India

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S113

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S113


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_submitter: WRAIR-Africa


ncbi_organism_name: Salmonella sp. CQ24WZ0616SAL

ncbi_submitter: Wanzhou CDC


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: adult honey bee queen gut

ncbi_organism_name: Bombella sp. ESL0385

ncbi_submitter: University of Lausanne


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Xiamen

ncbi_isolation_source: nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China University of technology


ncbi_organism_name: Flavobacterium johnsoniae UW101

ncbi_submitter: Cultivarium


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Candidatus Onthousia faecavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Onthousia;s__Candidatus Onthousia faecavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Onthousia;s__Candidatus Onthousia faecavium


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: China: the East China Sea

ncbi_organism_name: Ahrensia marina

ncbi_submitter: Ocean University of China


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: China: Guangdong; Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Rossellomorea sp. AcN35-11

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Sphingomonas sp. UNC305MFCol5.2

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Marivita cryptomonadis

ncbi_submitter: Shantou University


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Psychrobacillus sp.

ncbi_submitter: University of Western Australia


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Colombia: Valle del Cauca

ncbi_organism_name: Klebsiella sp. G2-16S-Nf13

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W83133

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Streptomyces umbrinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Tsinghua University


ncbi_country: United Kingdom: London

ncbi_isolation_source: Cough Swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_organism_name: Cellulomonas fimi

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Spain: Asturias

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Rhodobacteraceae bacterium IMCC15231

ncbi_submitter: Inha University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Enterobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bartonella sp. CB10SXKL

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Dorea longicatena


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Ottowia sp. VDI28

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: marine

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Kvitko Lab