ncbi_country: Chile

ncbi_isolation_source: kelp gull (Larus dominicanus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_organism_name: Microbacterium foliorum

ncbi_submitter: Aarhus University


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptomyces sp. NPDC005728

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_country: Denmark: Knudsoe; dry creekbed

ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: Portland State University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Proteocatella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Suleyman Demirel University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Universidad de Cantabria


ncbi_organism_name: uncultured Pelotomaculum sp.


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Salmonella sp. HY31

ncbi_submitter: Institute of animal husbandry and veterinary medicine


ncbi_organism_name: uncultured Polyangiaceae bacterium


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rochdale


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Staphylococcus pasteuri


ncbi_organism_name: Pilosibacter sp.


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Candidatus Poriferisodalis sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Candidatus Poriferisodalaceae;g__Candidatus Poriferisodalis;x__unclassified Candidatus Poriferisodalis;s__Candidatus Poriferisodalis sp.


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Russia: Orel region

ncbi_isolation_source: Cerebrospinal fluid (meningitis)

ncbi_submitter: SRCAMB


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Paenarthrobacter sp. FR1

ncbi_submitter: Shanghai Ocean University


ncbi_country: Japan

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: freshwater MAG --- Loc090721-6m_bin-749

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Mississippi Medical Center


ncbi_organism_name: Brevundimonas sp.


ncbi_isolation_source: traditional dairy product

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Ignavibacteria bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Antarctica

ncbi_isolation_source: marine algae

ncbi_organism_name: Pseudomonas sp. TAD18

ncbi_submitter: University of Florence


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vogeliibacteriota;s__Candidatus Vogelbacteria bacterium RIFOXYD1_FULL_42_15


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_country: Indonesia

ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces tuirus

ncbi_submitter: University of Oviedo


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_country: Australia: Melbourne

ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_isolation_source: throat

ncbi_organism_name: Rothia sp. HMSC075F09

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC075F09


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Switzerland

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Bern


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Kenya

ncbi_isolation_source: Not known


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_assembly_name: IMG-taxon 2695420925 annotated assembly

ncbi_organism_name: Flavobacterium fryxellicola

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Mariniblastus sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Engelhardtia mirabilis

ncbi_submitter: Radboud Universiteit Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__Planctomycetia incertae sedis;g__Engelhardtia;s__Engelhardtia mirabilis


ncbi_organism_name: Chitinimonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Brazil

ncbi_isolate: Amazon FNV 2010 0 4

ncbi_isolation_source: soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_strain_identifiers: Amazon FNV 2010 0 4

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: bacterium


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_submitter: University of Waterloo


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: NY; Annandale on Hudson

ncbi_isolation_source: freshwater creek

ncbi_organism_name: Massilia sp. BJB1822

ncbi_submitter: Bard College


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: seaweed

ncbi_organism_name: Marinifilum sp. N1E240

ncbi_submitter: shandong university


ncbi_country: Japan: Toyama

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Makerere University


ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Alteromonas macleodii


ncbi_country: France: Bordeaux

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_country: Honduras: Copan

ncbi_submitter: University of Gothenburg


ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Georgia


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Mucilaginibacter yixingensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-380

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_strain_identifiers: new MAG-380

ncbi_submitter: Micoorganism


ncbi_country: United Kingdom

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin N2.53

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_strain_identifiers: bin N2.53

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_country: USA: Maryland; Bethesda

ncbi_isolation_source: brain biopsy

ncbi_strain_identifiers: BCG-brain

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_submitter: Cornell University


ncbi_assembly_level: Chromosome

ncbi_country: Viet Nam

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: South Carolina

ncbi_isolation_source: sputum from South Carolina Dept. of Health and Environmental Control

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Murdoch University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Norway: Viken

ncbi_isolation_source: feces

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Mexico

ncbi_isolation_source: Small Colon

ncbi_submitter: JCVI


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5457

ncbi_submitter: University of Queensland


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_isolation_source: Poultry meat

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: NYC

ncbi_organism_name: Enterobacter chengduensis


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: IFSC USP


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: CFBP 5241

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Paraburkholderia sp. A1RI_3L

ncbi_submitter: KU Leuven


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: University of Mosul


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: uncultured Conexibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_isolate: stem of Talipariti tiliaceum

ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_strain_identifiers: stem of Talipariti tiliaceum;bgisy046

ncbi_submitter: BGI Research


ncbi_organism_name: OM43 beta proteobacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolate: AOP42_A1_surf _bin _15

ncbi_organism_name: Oceanisphaera sp.

ncbi_strain_identifiers: AOP42_A1_surf _bin _15

ncbi_submitter: Genoscope


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Finnish Food Authority


ncbi_organism_name: Akkermansia sp.


ncbi_submitter: University Hospital Muenster


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Georgia


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: California

ncbi_organism_name: Rhodococcoides corynebacterioides

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Anhui; Maanshan

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Kenya

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Clostridium sp. AF36-4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: Jeonbuk National University


ncbi_country: Denmark

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Peru: Lima

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UFMG


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Peptostreptococcaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_country: Japan:Niigata; Senami Hot Spring

ncbi_isolation_source: hot spring water

ncbi_organism_name: Thermus thermophilus

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Alcanivorax sediminis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources of PR China


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Eye Hospital


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Emcibacter sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Spain

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: Lund University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: terrestrial

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Queensland


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Streptococcaceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Chlamydia trachomatis RC-J/953

ncbi_submitter: Oregon State University


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Austria:Vienna; General Hospital Vienna

ncbi_organism_name: Klebsiella pneumoniae IS39

ncbi_submitter: AIT


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: South Korea: Oido

ncbi_organism_name: Polaribacter litorisediminis

ncbi_submitter: Kyung Hee university


ncbi_country: Colombia

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: cornea

ncbi_organism_name: Moraxella sp. K1630

ncbi_submitter: Lycoming College


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: China: Guangdong

ncbi_isolation_source: kefir grains

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Lawsonibacter asaccharolyticus


ncbi_organism_name: Acidaminococcus timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Chryseobacterium sp. MHB01

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Micromonospora sp. NPDC005599

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Portugal: Ermida

ncbi_isolation_source: soil

ncbi_organism_name: Delftia sp. UME58

ncbi_submitter: University of Minho


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_assembly_name: freshwater MAG --- LaPlata-7m-a_bin-668

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Sanmen People's Hospital


ncbi_country: India: Jharkhand; Bokaro; Khetko

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Gordonia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. M-M45

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Clostridioides difficile T19

ncbi_submitter: LPBA


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus gallinarum

ncbi_strain_identifiers: P17 C A7

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Yibin

ncbi_isolation_source: Wuliangye 501 Baijiu making workshop

ncbi_organism_name: Clostridium aromativorans

ncbi_submitter: Wuliangye Yibin Co., Ltd. Yibin


ncbi_organism_name: Cupriavidus pauculus

ncbi_submitter: EMG


ncbi_country: China: Jiangsu

ncbi_isolation_source: water

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Streptomyces griseolus

ncbi_strain_identifiers: NRRL B-2925

ncbi_submitter: University of Illinois


ncbi_country: Finland: Olkiluoto

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: Academia Sinica


ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_isolation_source: human gut

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Spain

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: clinical

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Ruminococcus] lactaris


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Nacional Mayor de San Marcos


gtdb_type_species_of_genus: t

ncbi_organism_name: Sinorhizobium fredii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: France: Caen

ncbi_isolation_source: drainage tube

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Normandy university


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: Denmark: Viborg

ncbi_isolation_source: activated sludge from Vibo_18-Q3-R45-57

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: KAUST


ncbi_organism_name: Streptomyces sp. NPDC057430

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Lund University


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: JNTUH


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tongji University


ncbi_country: USA: AL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Adamsella avium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__;c__;o__;f__;g__Candidatus Adamsella;s__Candidatus Adamsella avium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;g__Candidatus Adamsella;s__Candidatus Adamsella avium


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lactiplantibacillus dongliensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: China

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: metabat2_coassembly_bwa.953 MAG

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.953 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Calgary


ncbi_country: South Africa

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-2064

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Denmark: Capital Region of Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus oralis subsp. dentisani

ncbi_submitter: Slagelse Hospital


ncbi_organism_name: Corynebacterium matruchotii

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_strain_identifiers: LT2 KO STM3051

ncbi_submitter: University of California at Davis


ncbi_assembly_name: IMG-taxon 2654588204 annotated assembly

ncbi_organism_name: Streptococcus equinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella sp. 76556

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_isolation_source: Caecum


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Butyricimonas paravirosa

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: Houston

ncbi_submitter: University of Pittsburgh


ncbi_country: Korea

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Yonsei University


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S23

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Thiopseudomonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11309

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Paraliobacillus ryukyuensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: China: Yushu Prefecture; Qinghai Province

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Granulicatella sp. zg-ZJ

ncbi_strain_identifiers: zg-ZJ

ncbi_submitter: China CDC


ncbi_country: India

ncbi_isolation_source: Rice seed

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas extremorientalis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Yersinia pestis 2

ncbi_submitter: Beijing Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 2


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R678;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_submitter: Nankai University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: Japan

ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: Yonsei University


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Jyvaskyla


ncbi_country: Germany: Tzschelln

ncbi_isolation_source: acid mine drainage water

ncbi_organism_name: Ferrovum sp. PN-J185

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Betaproteobacteria bacterium TMED41

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Nocardia asteroides

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Lebanon

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ireland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Burkholderia dolosa

ncbi_submitter: University of Michigan


ncbi_country: USA: NY

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: Colon biopsy

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Neochlamydia sp. S13

ncbi_submitter: Faculty of Health Scieneces, Hokkaido University


ncbi_country: USA: Alaska; Fairbanks

ncbi_organism_name: Pseudomonas sp. ADAK2

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: USA: ID

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Microcoleus sp. CAN_BIN18

ncbi_submitter: University of Colorado at Boulder


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Cupriavidus sp.

ncbi_submitter: Universite de Montreal


ncbi_assembly_name: IMG-taxon 2595699004 annotated assembly

ncbi_organism_name: Cellulophaga fucicola

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Russia: the Tsinginskiy sor Lake; Yamalo-Nenets Autonomous Okrug; Tyumen region

ncbi_isolation_source: water

ncbi_organism_name: Rhodococcus sp. IEGM 1302

ncbi_strain_identifiers: IEGM 1302

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. IEGM 1302


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC091272

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Brenneribacteriota;s__Candidatus Brennerbacteria bacterium RIFOXYD1_FULL_41_16


ncbi_country: Canada: Ontario

ncbi_isolation_source: lung of pig with pneumonia

ncbi_organism_name: Actinobacillus suis

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_country: Canada: Smith s Cove; Nova Scotia

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: Arctic Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Hymenobacter siberiensis

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: AAFC


ncbi_country: Australia: Brisbane

ncbi_isolation_source: River

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Candidatus Roseilinea sp.

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Thermofontia;x__Candidatus Thermofonsia Clade 3;g__Candidatus Roseilinea;x__unclassified Candidatus Roseilinea;s__Candidatus Roseilinea sp.


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Japan

ncbi_isolation_source: not applicable

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Joint Faculty of Veterinary Medicine, Yamaguchi University


ncbi_organism_name: Lacrimispora xylanisolvens

ncbi_submitter: Ascus Biosciences


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: College of Basic Medical Science


ncbi_country: Australia: Victoria; Koo Wee Rup; Yallock Creek

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: Federation University Australia


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Desulfovibrio fairfieldensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Roseburia intestinalis


ncbi_organism_name: Salmonella sp. NW18

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacteroides clarus


ncbi_organism_name: Rhodanobacteraceae bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: freshwater metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_country: Denmark: Hovedstaden;Copenhagen

ncbi_isolation_source: Proficiency Panel Isolate

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Singapore

ncbi_isolation_source: 35 sequencing batch reactor activited sludge day 28

ncbi_organism_name: Defluviicoccus sp.

ncbi_submitter: Activated sludge


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Valencia

ncbi_isolation_source: water column of the freshwater reservoir Embalse de Amadorio in Spain

ncbi_organism_name: actinobacterium acAMD-5

ncbi_submitter: Evolutionary Genomics Group (UMH-EGG)


ncbi_assembly_name: IMG-taxon 2654588120 annotated assembly

ncbi_organism_name: Butyrivibrio sp. M55

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Cyanobacteria bacterium UBA11166

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA11166


ncbi_isolation_source: human stool

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces alboverticillatus

ncbi_submitter: USDA/ARS/NCAUR


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Hangzhou

ncbi_submitter: China Agriculture University


ncbi_country: Spain: fish farm

ncbi_isolation_source: Oncorhynchus mykiss

ncbi_organism_name: Flavobacterium tructae

ncbi_submitter: FDA


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oscillibacter valericigenes Sjm18-20

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: China: Guangdong

ncbi_isolation_source: cloacal swab

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Qinghai Province

ncbi_isolation_source: feces

ncbi_organism_name: Nocardioides faecalis

ncbi_submitter: China CDC


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Shigella sp. FC6500

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: Japan

ncbi_isolation_source: venous blood

ncbi_submitter: Toho university


ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: McGill University


ncbi_isolation_source: Riverbed mud

ncbi_organism_name: Pseudobacillus badius

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: [Ruminococcus] torques


ncbi_isolate: Human

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Human

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin5

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: MDV bin5

ncbi_submitter: Monash University


ncbi_assembly_name: Draft HST-077 Genome

ncbi_country: Lebanon: Byblos

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus HST-077

ncbi_submitter: Lebanese American University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;s__Candidatus Adlerbacteria bacterium RIFOXYB1_FULL_48_10


ncbi_isolate: AOP11_C1_surf _bin _7

ncbi_organism_name: Pseudolactococcus laudensis

ncbi_strain_identifiers: AOP11_C1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: Lab-scale methanogenic bioreactor treating purified terephthalic acid process wastewater

ncbi_organism_name: Smithella sp. PtaU1.Bin162

ncbi_submitter: University of Illinois


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: yogurt

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: [Bacteroides] pectinophilus

ncbi_submitter: Stanford University


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_submitter: La Trobe University


ncbi_country: Brazil

ncbi_isolation_source: Chicken Meat

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Winkia sp. UMB3164A

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Moskow Lomosonov State University


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Russia: Moscow

ncbi_isolation_source: feces of healthy child (10 years and 1 month old; male)

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Cellulomonas sp. Root137

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_submitter: National Health Research Institutes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: China: Jiangsu Province; Zhenjiang

ncbi_isolation_source: soil

ncbi_organism_name: Sphingomonas sp. MEA3-1

ncbi_submitter: Nanjing Agriculture university


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: Brookings; South Dakota

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: shallow pond

ncbi_organism_name: Nostoc sp. PCC 7107

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;s__Nostoc sp. PCC 7107


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Pork Chop

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute 'Microbe'


ncbi_organism_name: Stigmatella aurantiaca DW4/3-1

ncbi_submitter: TIGR


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Candidatus Enteromonas sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Alloenteromonas;x__unclassified Candidatus Enteromonas;s__Candidatus Enteromonas sp.


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paenibacillus dendritiformis C454

ncbi_submitter: Tel-Aviv University, Israel


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Phormidesmidales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Flavobacterium davisii

ncbi_submitter: South China Agricultural University


ncbi_isolate: AOP35_03E_surf _bin _37

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: AOP35_03E_surf _bin _37

ncbi_submitter: Genoscope


ncbi_organism_name: Streptomyces sp. NPDC058412

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Heyndrickxia sp. MSNUG

ncbi_strain_identifiers: MSNUG

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Rhizobium sp.

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: University Hospital Center and University of Lausanne


ncbi_organism_name: Salmonella sp. NW476

ncbi_submitter: Sichuan University


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of California, Riverside


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Tardiphaga sp. 839_C3_N1_4

ncbi_submitter: VIB


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Canada: Alberta

ncbi_isolation_source: necrotic leaf

ncbi_organism_name: Sphingomonas albertensis

ncbi_strain_identifiers: DOAB 1063

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: China: Beijing

ncbi_isolate: CHB

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_strain_identifiers: CHB

ncbi_submitter: Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Switzerland: Lake Zurich; 5 m depth

ncbi_organism_name: Candidatus Planktophila versatilis

ncbi_submitter: University of Zurich

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila versatilis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila versatilis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany

ncbi_isolation_source: Packed pork meat

ncbi_organism_name: Photobacterium iliopiscarium

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Vibrio taketomensis

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_country: New Zealand: Auckland

ncbi_isolation_source: Northboro reserve storm water drain

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_country: India: Prasanthi Gram; Puttaparthi

ncbi_isolation_source: pus sample from 80 year old female patient who underwent repair of intertrochantric fracture

ncbi_submitter: Sri Sathya Sai Institute of Higher Learning


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Antarctica

ncbi_isolation_source: Soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Network for Extreme Environment Research


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-00707

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-00707


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Panama: Coiba

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Okeania sp. SIO2F4

ncbi_submitter: UCSD


ncbi_country: Australia

ncbi_isolation_source: Missiing

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_country: USA: CA

ncbi_isolation_source: urine

ncbi_submitter: FDA/CFSAN


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Exiguobacterium sp. s143

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s143


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Limimonas egerieequi

ncbi_submitter: Quadram Institute


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sneathia sp.

ncbi_submitter: EBI


ncbi_isolation_source: yogurt

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 38

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory, Melbourne


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Haiti

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-80A1

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: cold seep

ncbi_organism_name: Spongiibacteraceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: EMG


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia: Port Hacking NRS

ncbi_isolation_source: Sea water

ncbi_organism_name: Synechococcus sp. PH41509

ncbi_submitter: Macquarie University


ncbi_organism_name: Psychroserpens sp.

ncbi_submitter: German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: Nanjing University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Metallibacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Russia: Transbaikal area

ncbi_isolation_source: mining waste

ncbi_organism_name: Desulfosporosinus sp. BG

ncbi_strain_identifiers: BG

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Cryptoclostridium obscurum

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Cryptoclostridium;s__Candidatus Cryptoclostridium obscurum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Cryptoclostridium;s__Candidatus Cryptoclostridium obscurum


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_country: Iran

ncbi_organism_name: Escherichia coli DEC5E


ncbi_country: Canada: British Columbia;Abbotsford

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB12-294

ncbi_submitter: Broad Institute


ncbi_country: Brazil

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans 11SSST2

ncbi_submitter: Cornell University


ncbi_country: China: Gannan

ncbi_genome_representation: partial

ncbi_isolation_source: breast milk

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Qingdao University


ncbi_organism_name: Sinomonas atrocyanea

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG11824

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: United Kingdom: Cheshire Salt District; Anderton Brine Spring System

ncbi_isolation_source: moderately saline water

ncbi_organism_name: Motilimonas cestriensis

ncbi_submitter: Hohai University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC058871

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Glycomyces rutgersensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_organism_name: Burkholderia mallei

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences (AMMS)


ncbi_organism_name: Aminobacter sp. J44


ncbi_assembly_name: RPT

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_assembly_name: Desnusiella massiliensis

ncbi_organism_name: Desnuesiella massiliensis

ncbi_submitter: URMITE


ncbi_isolation_source: beef carpaccio

ncbi_organism_name: Dellaglioa algida

ncbi_submitter: INRA


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Palacky University Olomouc


ncbi_assembly_name: genome assembly of LCT-EC59 strain of E.coli

ncbi_country: China: Beijing

ncbi_isolation_source: grown in culture and sent on a short-term space flight

ncbi_organism_name: Escherichia coli LCT-EC59

ncbi_submitter: Beijing Genomics Institute


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Leptogranulimonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Candidatus Soleaferrea sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Soleaferrea;x__environmental samples;s__uncultured Candidatus Soleaferrea sp.


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Ideonella sp. YS5

ncbi_submitter: Dongguk university


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pseudobacillus badius

ncbi_submitter: Zytex Biotech Pvt Ltd


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Paraburkholderia fungorum

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Rumen uncultured genome RUG12125

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: SAHMRI


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Brazil: Fortaleza


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: San Leandro; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: University of Southern California


ncbi_country: Switzerland

ncbi_isolation_source: human feces in bioreactor

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Laboratory of Infectious Diseases, Kitasato Institute for Life Sciences, Kitasato University


ncbi_country: China

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Braganca


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas urethralis

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_country: China: Zhengzhou

ncbi_isolation_source: Powdered Infant Formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Henan Center for Diease Control and Prevention


ncbi_isolation_source: Caecum


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Malta

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Solidesulfovibrio sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_country: Peru:Ascope; Santiago de Cao; Cartavio

ncbi_organism_name: Yersinia pestis PY-101

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: FL; Biscayne National Park

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pseudoalteromonas sp. OF5H-5

ncbi_submitter: Meyer Microbes Lab


ncbi_isolation_source: phycosphere of Gambierdiscus carolinianus collected in 2011-03-23 from USA:Cheeca Rocks; Florida Keys and Bahamas: San Salvador; and Gambierdiscus caribaeus collected in 2013-06 from USA: Saint Thomas; USVI; Tennessee Reef; Florida Keys

ncbi_organism_name: Phycisphaeraceae bacterium


ncbi_country: Switzerland: Le Moleson region; Fribourg

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus sp. ESL0246

ncbi_submitter: University of Lausanne


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: DOE JGI


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Spain

ncbi_isolation_source: Plant leaf

ncbi_organism_name: Xanthomonas arboricola pv. juglandis

ncbi_strain_identifiers: IVIA 1317

ncbi_submitter: INIA


ncbi_country: USA:Orange County

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: AR

ncbi_isolation_source: soil

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_isolation_source: feces

ncbi_organism_name: Romboutsia ilealis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli BIDMC 19B

ncbi_strain_identifiers: BIDMC 19B

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella sp. M9-3

ncbi_submitter: Zhejiang University


ncbi_country: Australia

ncbi_isolation_source: sewage from residential aged care facility

ncbi_organism_name: Stenotrophomonas sp. Sm6012

ncbi_submitter: Medical Research Future Fund


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Universiti Sains Malaysia


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Nocardia jejuensis NBRC 103114

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Groningen


ncbi_country: Ireland: Dungarvan

ncbi_isolation_source: haemolymph

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: Cefas


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: New York

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: South Korea: Haenam

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: POSTECH


ncbi_country: Mexico

ncbi_isolation_source: parent strain ID4365

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UNAM


ncbi_organism_name: Halomonas sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Phocaeicola abscessus


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: CHU de Bordeaux


ncbi_country: Canada: Toronto

ncbi_submitter: University of Toronto


ncbi_country: China: Wenzhou

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0187

ncbi_submitter: Broad Institute


ncbi_organism_name: Thioalkalivibrio sp. ALE18

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Corynebacterium durum

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Colivivens equi

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Candidatus Colivivens;s__Candidatus Colivivens equi


ncbi_country: Costa Rica: Guanacaste Conservation Area

ncbi_isolation_source: insect

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Microbulbifer agarilyticus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Jersey

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWE2_37_8


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Candidatus Calescibacterium sp.

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Calescibacteriota;g__Candidatus Calescibacterium;x__unclassified Candidatus Calescibacterium;s__Candidatus Calescibacterium sp.


ncbi_country: China

ncbi_isolation_source: feces; evolved day10-1

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Peru

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei MSHR5596

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Eggerthella sp.


ncbi_country: Norway

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: USA: Iowa

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: Germany: Neuharlingersiel

ncbi_isolation_source: tidal flat area

ncbi_organism_name: Roseobacter fucihabitans

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Edaphobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Schaedlerella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ecuador

ncbi_isolation_source: pulmonary

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad San Francisco de Quito


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Geobacillus thermodenitrificans NG80-2

ncbi_submitter: TEDA School of Biological Sciences and Biotechnology, Nankai University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: manure wastewater

ncbi_submitter: Chinese Academy of Sciences


ncbi_assembly_name: IMG-taxon 2597490346 annotated assembly

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Ludong University


ncbi_organism_name: Candidatus Scybalocola faecigallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-4697

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Streptomyces sp. NPDC057611

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Shewanella sp. HL-SH4

ncbi_submitter: Seoul National University