ncbi_isolation_source: gypsum liner walls of a childrens bedroom

ncbi_organism_name: Pseudoroseomonas ludipueritiae

ncbi_submitter: Chinese Center for Disease Control and Prevention


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: marine water sample

ncbi_organism_name: Roseibacillus sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_name: MGTN

ncbi_isolate: MGTN

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: MGTN

ncbi_submitter: UNIMI


ncbi_country: China: Zhengzhou

ncbi_isolation_source: drainage

ncbi_submitter: First Affiliated Hospital of Zhengzhou University


ncbi_country: USA: TX

ncbi_isolation_source: feces psittacine

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: China

ncbi_isolation_source: ice core

ncbi_organism_name: Cryobacterium sp. M91

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Bacteroidales bacterium


ncbi_assembly_level: Scaffold

ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Brucella intermedia

ncbi_submitter: CSIR-Indian Institute of Toxicology Research


ncbi_isolation_source: water

ncbi_organism_name: Proteobacteria bacterium UBA5949

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA5949


ncbi_country: USA: International Space Station

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA124

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG11456

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: USA: Benton County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1B6

ncbi_submitter: Oregon State University


ncbi_country: USA

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: international space station internal surface

ncbi_organism_name: Pantoea piersonii


gtdb_type_species_of_genus: t

ncbi_organism_name: Mesocricetibacter intestinalis

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Amnibacterium kyonggiense


ncbi_country: Peru: Lima

ncbi_isolation_source: wildlife

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Andres Bello


ncbi_country: French Guiana

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: New Hampshire

ncbi_isolation_source: esophagus aspirate

ncbi_organism_name: Streptococcus sp. GP0011

ncbi_submitter: University of New Hampshire


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0031


ncbi_assembly_name: freshwater MAG --- LinL3_bin-1115

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: India

ncbi_isolation_source: Sewage

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Bharat


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Cyclobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: EMG


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Arenimonas sp.


ncbi_isolation_source: creek sediment

ncbi_organism_name: Aromatoleum evansii

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: Gimesia maris


ncbi_organism_name: Saccharothrix ecbatanensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France

ncbi_isolation_source: digestive flora (rat)

ncbi_organism_name: Lactobacillus hominis

ncbi_strain_identifiers: CIRM-BIA 873

ncbi_submitter: Brigham Young University


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Sydney


ncbi_country: Canada

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: Kasetsart University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA6998

ncbi_submitter: University of Queensland


ncbi_country: Germany: Jena

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Austria: Wenger bog near Salzburg

ncbi_isolation_source: freshwater; acidic water of a bog system

ncbi_organism_name: Polynucleobacter sphagniphilus

ncbi_submitter: University of Innsbruck


ncbi_submitter: University of Tartu


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Kidney stone

ncbi_submitter: Chulalongkorn University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Colombia

ncbi_isolation_source: wound/abscess

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Clinic Heidelberg


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces subrutilus

ncbi_submitter: KAIST


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_assembly_level: Chromosome

ncbi_submitter: Universidad Autonoma Metropolitana Unidad Xochimilco


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: University of Cadiz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Chryseobacterium sp. SIMBA_028

ncbi_submitter: SIMBA


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Gordonibacter urolithinfaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas corrugata

ncbi_submitter: Agriculture Victoria Research


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Salmonella sp. NW331

ncbi_submitter: Sichuan University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Streptococcus oralis


ncbi_isolation_source: trachael aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Caecum

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Tonga Trench

ncbi_isolation_source: Deep-sea sediment

ncbi_organism_name: Caloranaerobacter azorensis

ncbi_submitter: National Marine Biodiversity Institute of Korea


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Broad Institute


ncbi_country: China: Zhejiang

ncbi_isolation_source: maize

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Italy: Venice Lagoon

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: National Institute of Oceanography and Applied Geophysics - OGS


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Poland: Zielona Gora

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: Thailand

ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: NCTR/FDA


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Bacteroides koreensis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Rhodococcus sp. SORGH_AS_0303

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. SORGH_AS_0303


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Beijing

ncbi_isolation_source: patients

ncbi_submitter: Yangzhou University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Aliarcobacter lanthieri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Syntrophobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Nigeria

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Medical Mycology Research Center


ncbi_country: Russia: Ekaterinburg

ncbi_isolation_source: lungs

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: INRAE


ncbi_strain_identifiers: LT2 KO_STM1560

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Mixta calida


ncbi_organism_name: uncultured Anaerococcus sp.


ncbi_country: South Korea

ncbi_organism_name: Nocardia seriolae

ncbi_submitter: National Institute of Fisheries Science


ncbi_assembly_name: genomic workbench

ncbi_country: China: Hohhot

ncbi_isolation_source: pericardium

ncbi_organism_name: Mesomycoplasma ovipneumoniae NM2010

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_submitter: Makerere University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Allobaculum sp.


ncbi_organism_name: Salmonella sp. SKLX088367

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Salmonella enterica CVM 43766 v1.0

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Georgia Institute of Technology


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_assembly_name: Campylobacter jejuni CVM 41921 v1.0

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter jejuni CVM 41921

ncbi_submitter: FDA/CVM


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B10(2017)

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Chengdu

ncbi_isolation_source: Shared bicycle

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_assembly_name: freshwater MAG --- AM2_bin-0306

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: bronchial washing

ncbi_organism_name: Neisseria sp. HMSC059F02

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: China:Zhejiang province

ncbi_isolation_source: probitic products

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Zhejiang Tianke High Technology Development Co.Ltd.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Korea Zoonosis Research Institute


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: SAR116 cluster bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium


ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolate: AOP1_B1_surf _bin _16

ncbi_organism_name: Mycetocola sp.

ncbi_strain_identifiers: AOP1_B1_surf _bin _16

ncbi_submitter: Genoscope


ncbi_country: Antarctica: King George Island

ncbi_organism_name: Amycolatopsis antarctica

ncbi_submitter: Institute of Microbiology, CAS


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Christensenellales bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Weissella cibaria

ncbi_submitter: BGI


ncbi_country: USA: Ohio

ncbi_organism_name: Marinobacter persicus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Mexico: Morelos; Zacatepec; Apatlaco River

ncbi_isolation_source: river sediment

ncbi_organism_name: Stenotrophomonas sp. ZAC14D2_NAIMI4_7

ncbi_submitter: Centro de Ciencias Genomicas - UNAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Stenotrophomonas;x__Stenotrophomonas maltophilia group;x__unclassified Stenotrophomonas maltophilia group;s__Stenotrophomonas sp. ZAC14D2_NAIMI4_7


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Vienna


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Kytococcus schroeteri

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: GA

ncbi_isolation_source: watermelon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Candidatus Onthoplasma sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Christensenellales;f__Christensenellaceae;x__Christensenellaceae incertae sedis;g__Candidatus Onthoplasma;x__unclassified Candidatus Onthoplasma;s__Candidatus Onthoplasma sp.


ncbi_country: Germany

ncbi_isolate: early isolate NN2 (clone C)

ncbi_isolation_source: Cystic fibrosis lung

ncbi_organism_name: Pseudomonas aeruginosa C-NN2

ncbi_strain_identifiers: early isolate NN2 (clone C)

ncbi_submitter: MHH


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P1 CL A21

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mitsuokella sp.

ncbi_submitter: EMG


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: RIKEN-BRC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Vampirovibrionales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Thiothrix sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces bottropensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Pontiellaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: MLST 649;AUS-1

ncbi_submitter: Murdoch University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Bern


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of La Rioja


ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus infantis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Rhadinopsylla li ventricosa

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Svalbard: Spitsbergen

ncbi_isolation_source: Arctic Soil

ncbi_organism_name: Pedobacter hiemivivus

ncbi_submitter: Kyonggi University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Kenya: Kisii

ncbi_submitter: Makerere University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-0372

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: USA: Becker; Minnesota

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Henan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Vescimonas coprocola

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Australia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Sydney


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Candidatus Obscuribacterales bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__unclassified Candidatus Obscuribacterales;s__Candidatus Obscuribacterales bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Leon University


ncbi_organism_name: Streptomyces spectabilis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Kaistia sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Institute of Biotechnology, Vietnam Academy of Science and Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: South Africa: Sihleza Clinic

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0150

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured SAR92 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Cellvibrionales;f__Porticoccaceae;x__unclassified Porticoccaceae;x__SAR92 clade;x__environmental samples;s__uncultured SAR92 cluster bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Granulicatella sp.


ncbi_organism_name: Amycolatopsis sp. 3B14

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: human gut

ncbi_organism_name: Streptococcus vestibularis


ncbi_submitter: FDA/CFSAN


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AM97-28

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Halalkalibacterium halodurans

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans


ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Corynebacterium sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_organism_name: Planctomycetaceae bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Jiangxi Normal University


ncbi_country: China

ncbi_isolation_source: Out-of-house environment

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sulfitobacter sp.


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: Inha University


ncbi_country: France

ncbi_isolation_source: milk

ncbi_organism_name: Mycoplasmopsis agalactiae

ncbi_submitter: INRAE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Chile: Atacama Saltern

ncbi_isolation_source: Lake Tebenquiche

ncbi_organism_name: Chromohalobacter nigrandesensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 91 - depth 500m

ncbi_organism_name: Idiomarina sp. REDSEA-S21_B4

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Bartonella grahamii subsp. shimonis

ncbi_submitter: Military Health Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Guelph


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Melbourne

ncbi_isolation_source: wound

ncbi_submitter: Monash University


ncbi_country: Brazil

ncbi_isolation_source: chicken piece (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: metabat2_pooled_metaflye.44 MAG

ncbi_organism_name: Massilimicrobiota timonensis

ncbi_strain_identifiers: metabat2_pooled_metaflye.44 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Colombia: Ibague

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: Nebraska

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: Colorado State U


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Pantoea septica


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0721

ncbi_submitter: Broad Institute


ncbi_isolation_source: Groin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_country: USA: New Jersey

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Health Agency


ncbi_country: Thailand

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Kasetsart University


ncbi_country: China: Weihai

ncbi_isolation_source: offshore sediment

ncbi_organism_name: Aliiroseovarius sp. F20344

ncbi_submitter: Shandong University,Weihai


ncbi_assembly_name: freshwater MAG --- Loc090519-4m_bin-112

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Germany

ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Enterococcus sp. FR143

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_country: USA: Chapel Hill; North Carolina

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: Sil NS 28

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Candidatus Bealeia paramacronuclearis

ncbi_strain_identifiers: US_Bl 11III1

ncbi_submitter: University of Pisa


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Banaras Hindu University


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: New Zealand: Dunedin

ncbi_submitter: University of Otago


ncbi_organism_name: Bacteroides cellulosilyticus DSM 14838

ncbi_submitter: Ben Gurion University of the Negev

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides cellulosilyticus;x__Bacteroides cellulosilyticus DSM 14838


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5252


ncbi_organism_name: Proteus vulgaris

ncbi_submitter: the seqafrica consortium


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: ocean university of China


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Salmonella sp. C3192

ncbi_submitter: Sichuan University


ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: South China Agricultural University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. NPDC090741

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Deltaproteobacteria bacterium 37-65-8

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium 37-65-8


ncbi_organism_name: Coprothermobacter proteolyticus

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Rickettsia aeschlimannii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Bacteroidota bacterium


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: Rain forest

ncbi_organism_name: Acinetobacter sp. ESL0695

ncbi_submitter: University of Lausanne


ncbi_country: China: Fuzhou

ncbi_organism_name: Pantoea sp. SS70

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M80979

ncbi_submitter: Broad Institute


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Australia

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of New South Wales


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides uniformis dnLKV2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Propionivibrio sp.

ncbi_submitter: Aalborg University


ncbi_assembly_name: IMG-taxon 2734482178 annotated assembly

ncbi_organism_name: Variovorax sp. YR752

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Anaerococcus tetradius

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_country: Russia: Rostov-na-Donu

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium afermentans

ncbi_submitter: SRCAMB


ncbi_assembly_name: freshwater MAG --- Erken-D8_bin-0476

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Roseiflexaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: School of Agricultural and Veterinary Sciences, Sao Paulo State University (Unesp)


ncbi_organism_name: Parvibaculum sp.


ncbi_organism_name: Vampirovibrionales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Rhodopseudomonas palustris TIE-1

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Leptospirales bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Brucella pseudogrignonensis

ncbi_submitter: USDA-ARS


ncbi_country: Canada: Alberta

ncbi_isolation_source: dairy milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: McGill University


ncbi_country: USA: Southern California

ncbi_isolation_source: fresh water [ENVO:00002011]

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of California, Irvine


ncbi_organism_name: Idiomarina sp.

ncbi_submitter: Xiamen University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater from Yellow Sea

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Chittagong


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_assembly_name: Rumen uncultured genome RUG10079

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Spain: Asturias

ncbi_organism_name: Humibacillus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_assembly_name: IMG-taxon 2681813511 annotated assembly

ncbi_organism_name: Salimicrobium flavidum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: FDA-CVM


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_assembly_name: uncultured UBA985 Verrucomicrobiales SW02_Bin7

ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: iBB-IST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Guangzhou

ncbi_isolation_source: anal swab

ncbi_submitter: GUANGZHOU CDC,China


ncbi_assembly_name: Rumen uncultured genome RUG13643

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_isolation_source: lake water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Liaoning

ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_country: Australia: Melbourne

ncbi_isolation_source: aerobically stored beef

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: CSIRO Agriculture and Food


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_isolation_source: not known


ncbi_country: China

ncbi_isolation_source: marine sediment

ncbi_organism_name: Pontibaca salina

ncbi_submitter: Shandong University at Weihai


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_isolation_source: bioreactor

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Queensland university of technology


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: Florida

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM79_1594


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: alginate 40-100 m particle (artificial) mid colonization

ncbi_organism_name: Cellulophaga baltica

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_organism_name: Nostocoides sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Nacional de Rehabilitacion Luis Guillermo Ibarra Ibarra


ncbi_organism_name: Ureibacillus sp. 179-F W5.1 NHS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Ureibacillus;x__unclassified Ureibacillus;s__Ureibacillus sp. 179-F W5.1 NHS


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Sardar Patel University, V.V.Nagar


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wyoming


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG11645

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Micromonospora zamorensis

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Hubei

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Ethiopia: Benishangul; Asosa; Bambasi

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Oregon State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks


ncbi_country: USA: New Hampshire

ncbi_isolation_source: ascending colon lumen

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: China: Guangdong

ncbi_isolation_source: Rice flour product

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_isolation_source: fecal samples

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universiti of Malaya


ncbi_country: Estonia

ncbi_isolation_source: milk

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Colombia: Bolivar

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Geobacter sulfurreducens KN400

ncbi_submitter: University of Massachusetts, Amherst


ncbi_country: Cameroon: Northern Cameroon

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14420

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Beihang University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Czech Republic: Havlickuv; Brod

ncbi_isolation_source: human cervix

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Bielefeld University


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: India

ncbi_organism_name: Roseospira visakhapatnamensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site C

ncbi_isolation_source: Beach sand

ncbi_organism_name: Eudoraea sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: oropharynx; sputum; or bronchoalveolar lavage

ncbi_submitter: University of Washington


ncbi_country: China: Taizhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Ackermann

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Brigham Young University


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Nanyang Technological University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Zhejiang University


ncbi_submitter: University of Waterloo


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Cryomorpha sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: Candidatus Cloacimonas acidaminovorans

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__Candidatus Cloacimonas acidaminovorans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__Candidatus Cloacimonas acidaminovorans


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Houston

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Virgibacillus pantothenticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2687453773 annotated assembly

ncbi_organism_name: Geodermatophilus sp. DSM 45219

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia: Marion Bay; Southeast Australia

ncbi_isolation_source: stromatolite

ncbi_organism_name: Leptolyngbya sp. SIO4C5

ncbi_submitter: UCSD


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Sphingomonas adhaesiva

ncbi_submitter: UNESP-FCAV


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Fervidibacter sp.

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;x__unclassified Candidatus Fervidibacter;s__Candidatus Fervidibacter sp.


ncbi_organism_name: Patescibacteria group bacterium


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-F05

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Bielefeld University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Salinicola sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: OH

ncbi_isolation_source: food

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Melanargia galathea


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: EMG


ncbi_organism_name: Microbacterium ginsengiterrae


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Bern


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Proteus penneri

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Cellulosimicrobium funkei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Klebsiella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Oscillatoriaceae bacterium


ncbi_organism_name: uncultured bacterium


ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_isolation_source: human milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: URMITE


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Canada: Ontario

ncbi_isolation_source: Beef Deli Slices

ncbi_submitter: Health Canada


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: chicken sausage wild mushroom garlic

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 826a

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: Fecal samples

ncbi_isolation_source: CEREMI

ncbi_strain_identifiers: Fecal samples


ncbi_country: USA: CA

ncbi_isolation_source: white peach


ncbi_organism_name: Klebsiella sp. HMSC22F09

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_organism_name: Muribaculum intestinale


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Porphyromonas levii

ncbi_submitter: University of Calgary


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Singulisphaera sp. GP187

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Burkina Faso

ncbi_isolation_source: skin wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: Synechococcus sp. UW106

ncbi_submitter: UNIVERSITY OF SOUTHERN CALIFORNIA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Polish Academy of Science


ncbi_country: China: Shandong

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: AZ

ncbi_isolation_source: Human clinical

ncbi_organism_name: Francisella tularensis subsp. novicida

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Australia

ncbi_isolation_source: vaccine

ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_strain_identifiers: MS-H

ncbi_submitter: The University of Melbourne


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Monash University


ncbi_country: Puerto Rico: Maunabo

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Hellea sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Lacrimispora sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: CRC RESIST


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: University College Cork


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Mycoplasmopsis synoviae


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Viet Nam

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Trueperella bernardiae

ncbi_submitter: Loyola University Chicago


ncbi_country: USA

ncbi_organism_name: Anaplasma phagocytophilum

ncbi_submitter: IREC-SaBiO


ncbi_organism_name: uncultured Roseibacillus sp.


ncbi_organism_name: Thermodesulfovibrionia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Japan:Gunma; Tsumagoi

ncbi_isolation_source: Tengu-no-mugimeshi

ncbi_organism_name: Dictyobacter alpinus

ncbi_submitter: Microbial resources, Graduate School of Agricultual Science, Tohoku University


ncbi_country: USA: Gainesville

ncbi_isolation_source: urinary tract infection

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China

ncbi_submitter: South China Agricultural University


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Shigella sonnei 09-4962

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_submitter: University of Queensland


ncbi_country: USA: New York

ncbi_isolation_source: Ground beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Paenarthrobacter nitroguajacolicus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Universidad de Leon


ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Poland: Rybnik

ncbi_isolation_source: bronchial aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Michigan State University


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Rhizobiales bacterium Y(2018)

ncbi_submitter: University of Trento


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: LokiAmp MDA-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Candidatus Scalindua sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;x__unclassified Candidatus Scalindua;s__Candidatus Scalindua sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: MTB PR05 version 2

ncbi_country: Malaysia: Selangor

ncbi_isolation_source: cerebrospinal fluid sample from tuberculosis patient

ncbi_organism_name: Mycobacterium tuberculosis PR05

ncbi_submitter: Universiti Teknologi MARA


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium RIFCSPHIGHO2_02_FULL_33_17


ncbi_country: Viet Nam: Con Dao

ncbi_isolation_source: seagrass

ncbi_organism_name: Streptomyces sp. V17-9

ncbi_submitter: Korea Institute of Science and Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: ear swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: Caecum

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2654588143 annotated assembly

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: BGI


ncbi_organism_name: Bifidobacterium breve


ncbi_country: Poland: Biala-Podlaska

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Germany

ncbi_isolation_source: Groin swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: SurvCARE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: uncultured Bacillota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Beth Israel Deaconess Medical Center/Harvard Medical School


ncbi_organism_name: Acinetobacter sp. Lyrl_1

ncbi_submitter: Banaras Hindu University


ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: University of California Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NYU Grossman School of Medicine


ncbi_isolate: SPRUCE 133

ncbi_organism_name: Candidatus Binatia bacterium

ncbi_strain_identifiers: SPRUCE 133

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Limosilactobacillus reuteri subsp. suis

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Candidatus Muiribacteriota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Muiribacteriota;x__unclassified Candidatus Muiribacteriota;s__Candidatus Muiribacteriota bacterium


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: bacterium 1XD42-54

ncbi_submitter: Chinese Academy of Science


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_assembly_name: freshwater MAG --- Erken-D3_bin-1092

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: freshwater MAG --- Erken-D4_bin-0842

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: HiMedia Laboratories Private Limited


ncbi_country: South Africa: Cape Town

ncbi_isolation_source: Cape Town; South Africa

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: USDA ARS


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_submitter: Center for Microbial Communities


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_country: Mexico: Jalisco

ncbi_isolation_source: blood

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Universidad de Sonora


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: McMaster University


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Waterline

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: University of Basel


ncbi_isolation_source: urine cvs

ncbi_organism_name: Streptococcus sp. HMSC072G02

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Greenland

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: NRRL BD-190

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Ghana: Korle-Gonno Lake

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Ghana


ncbi_country: USA: North Carolina

ncbi_organism_name: Listeria booriae

ncbi_submitter: University of Tennessee


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Bordetella bronchiseptica MBORD675

ncbi_submitter: JCVI


ncbi_country: South Africa

ncbi_isolation_source: Fresh produce/cucumber

ncbi_submitter: University of Pretoria


ncbi_organism_name: Eisenbergiella porci

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Prevotella bivia

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: EMG


ncbi_country: Italy: Ittiri

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_country: USA: New York; NY

ncbi_isolation_source: pubic bone

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MSKCC


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: UMass Amherst


ncbi_country: China: Hainan

ncbi_isolation_source: meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Candidatus Onthousia faecipullorum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Onthousia;s__Candidatus Onthousia faecipullorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Onthousia;s__Candidatus Onthousia faecipullorum


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: food

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: endotracheal aspirate

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_country: Thailand

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Shewanella chilikensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Anaeromassilibacillus sp.

ncbi_submitter: EMG


ncbi_isolate: SPRUCE 195

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_strain_identifiers: SPRUCE 195

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Ireland

ncbi_isolation_source: broiler caeca 4

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: USA: Michigan; Powell Township; Upper Pine Lake

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas sp. HMWF032

ncbi_submitter: University of Illinois


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Lachnospira eligens CAG:72

ncbi_submitter: DTU


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_country: Brazil: Campos Basin; Rio Janeiro RJ

ncbi_isolation_source: Production water from offshore oil exploration

ncbi_organism_name: Oceanotoga teriensis

ncbi_submitter: Federal University of Vicosa


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: SurvCARE


ncbi_country: China: Guangxi

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA2974

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA2974


ncbi_country: USA: Boston; MA

ncbi_isolation_source: tip

ncbi_organism_name: Staphylococcus aureus M0096

ncbi_submitter: Broad Institute


ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_assembly_name: Rumen uncultured genome RUG569

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: clinical material

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: marine

ncbi_organism_name: Alcanivorax sp.


ncbi_country: Norway: Rogaland

ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium sp. MSK163

ncbi_submitter: Duke University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Anaerolineaceae bacterium UBA4931


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Comenius University Science Park


ncbi_submitter: Shanghai Hongkou District Center for Disease Control and Prevention


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Streptomyces sp. NPDC014758

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Qingdao Agricultural university


ncbi_organism_name: Pseudolactococcus raffinolactis


ncbi_organism_name: Streptomyces sp. NPDC015220


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Bdellovibrionota bacterium FG-2

ncbi_submitter: CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Bdellovibrionota;x__unclassified Bdellovibrionota;s__Bdellovibrionota bacterium FG-2


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: EPFL