ncbi_submitter: Washington State Department of Health Public Health Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


gtdb_representative: f

ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Albany; California

ncbi_isolation_source: ginger

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: bovine 5 year old female brain

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: India

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_country: Viet Nam

ncbi_isolation_source: Edible insect Bombyx mori

ncbi_submitter: Justus Liebig University Giessen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China

ncbi_organism_name: Bacteroides sp. ZJ-21

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Streptomyces bluensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_submitter: Monash University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: Nicaragua: Managua

ncbi_isolation_source: antrum; stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 318

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: SNUC 2120

ncbi_submitter: University of Calgary


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University Hospital Frankfurt


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: nodules

ncbi_organism_name: Mesorhizobium sp. B283B1A

ncbi_submitter: Curtin University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_isolation_source: water

ncbi_organism_name: Salinivibrio costicola subsp. alcaliphilus

ncbi_refseq_category: reference genome

ncbi_submitter: Universidad de Sevilla

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Savannah River Site

ncbi_isolation_source: environmental

ncbi_organism_name: Cupriavidus basilensis

ncbi_strain_identifiers: SRS

ncbi_submitter: University of Georgia


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG13193

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Lentisphaeria bacterium UBA1784

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__unclassified Lentisphaeria;s__Lentisphaeria bacterium UBA1784


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 44362_10

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: UCC isolate

ncbi_organism_name: Acinetobacter sp. FDAARGOS_560

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_organism_name: Nocardia inohanensis NBRC 100128

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsCore2_bin-1831

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Caldisericota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__environmental samples;s__uncultured Caldisericota bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Auburn University


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Ruminococcus bromii


ncbi_country: China: Ningde

ncbi_organism_name: Pseudomonas plecoglossicida

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_submitter: The University of Melbourne


ncbi_country: Cameroon

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_strain_identifiers: IPCA


ncbi_country: China: Hubei

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Hong Kong: Telegraph Bay

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pantoea dispersa

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enteractinococcus coprophilus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University of Central Florida


ncbi_isolate: AOP36_E1_surf _bin _10

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: AOP36_E1_surf _bin _10

ncbi_submitter: Genoscope


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agriculture University


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Micromonospora sp. DT43

ncbi_submitter: University of Liege


ncbi_country: Argentina: Comallo; Rio Negro Province

ncbi_organism_name: Brucella ovis IntaBari-2001-319-4082

ncbi_submitter: Broad Institute


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: Germany

ncbi_isolation_source: Dust

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_organism_name: Streptomyces sp. NPDC048297

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Anaerosporobacter sp.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Pseudoalteromonas marina

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Massachusetts; Boston

ncbi_isolation_source: nasal

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: Hospital

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Litorivicinaceae bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Campylobacter coli BIGS0003

ncbi_submitter: Swansea University


ncbi_country: Canada: Halifax

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21264


ncbi_organism_name: Mycobacterium orygis

ncbi_submitter: National Institute of Animal Biotechnology


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Bulgaria

ncbi_isolation_source: flos of endemic Bulgarian plant species Astragalus aitosensis

ncbi_organism_name: Paenibacillus nuruki

ncbi_submitter: ncipd


ncbi_country: Japan

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Yonsei University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_country: Australia

ncbi_submitter: Robert Koch Institute


ncbi_submitter: Sao Paulo State University-FCAVUnesp

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile CD45

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Bacteroidales bacterium Bact_19

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium Bact_19


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Streptomyces sp. NPDC006529

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: Nepal

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Arthrobacter sp. 7Tela_A1

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Intestinal mucosa tissue

ncbi_organism_name: Escherichia coli K02

ncbi_submitter: Broad Institute


ncbi_country: South Korea:South Sea

ncbi_isolation_source: isolated from bluespotted cornetfish

ncbi_organism_name: Paracoccus fistulariae

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Norway

ncbi_isolation_source: kidney

ncbi_organism_name: Tenacibaculum finnmarkense genomovar ulcerans

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Hospital Sirio-Libanes


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Paenibacillus alvei

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Shanghai

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghaishinongyekexueyuan


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Stappia stellulata

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces venezuelae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China

ncbi_isolation_source: marine sediment

ncbi_organism_name: Psychromarinibacter sediminicola

ncbi_submitter: Shandong University at Weihai


ncbi_country: USA: Oregon

ncbi_isolation_source: Blood

ncbi_organism_name: Capnocytophaga sp. H4358

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 34

ncbi_submitter: Lebanese American University


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sri Lanka

ncbi_isolation_source: Banana rhizosphere

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: University of Leuven


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides parvus

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: USA: GA

ncbi_organism_name: Shigella dysenteriae

ncbi_strain_identifiers: DMB SH20191

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Medical City


ncbi_country: China: Guigang City; Guangxi Province

ncbi_isolation_source: stool

ncbi_submitter: SCAU


ncbi_submitter: EMG


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: Fermented milk

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: IGA Technology Services Srl


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: [Ruminococcus] torques


ncbi_organism_name: Vibrio toranzoniae

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bacillus cereus group sp. BceL065

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL065


ncbi_isolate: Klebsiella pneumoniae

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Klebsiella pneumoniae

ncbi_submitter: IMIBIC


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)

ncbi_submitter: BGI Research


ncbi_organism_name: Archangium violaceum

ncbi_strain_identifiers: Cbvi 34

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Francisellaceae bacterium


ncbi_organism_name: Thiolinea sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Japan

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_AA_1

ncbi_organism_name: uncultured Parafilimonas sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Australia: Brisbane

ncbi_submitter: The University of Queensland


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-2598

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: USA: University Park

ncbi_organism_name: Chlorobaculum limnaeum

ncbi_submitter: Pennsylvania State University


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_country: Thailand: Burirum

ncbi_isolation_source: urine

ncbi_submitter: Faculty of Public Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Geneva University Hospitals


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: liver

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Citromicrobium bathyomarinum

ncbi_submitter: Xiamen University


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: USA: San Marcos; TX

ncbi_isolation_source: SMARC larva 1.1

ncbi_organism_name: Chromobacterium sp. S0633

ncbi_submitter: Texas State University


ncbi_assembly_name: freshwater MAG --- E14_bin-2931

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: BILS


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Streptomyces sp. wa53

ncbi_submitter: Cornell University


ncbi_organism_name: Candidatus Humimicrobiales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Humimicrobiia;o__Candidatus Humimicrobiales;x__unclassified Candidatus Humimicrobiales;s__Candidatus Humimicrobiales bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Hawaii

ncbi_isolation_source: laboratory contaminant from a culture of Gloeobacter violaceus

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: University of Hawaii at Manoa


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: INDIAN INSTITUTE OF SCIENCE EDUCATION AND RESEARCH, BHOPAL


ncbi_country: Belgium: Wallonia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_country: USA

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Jinan

ncbi_isolation_source: Bumble bee gut

ncbi_organism_name: Apibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: Denmark: Roskilde

ncbi_organism_name: Streptococcus infantarius

ncbi_submitter: Region Zealand


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Microcoleus sp. FACHB-68

ncbi_submitter: South China Normal University


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 3972A

ncbi_submitter: University of Exeter


ncbi_country: Japan: Kyoto

ncbi_isolation_source: Kyoto

ncbi_submitter: Kyoto Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis;s__Sphingopyxis terrae;sb__Sphingopyxis terrae subsp. terrae;x__Sphingopyxis terrae subsp. terrae NBRC 15098


ncbi_organism_name: Bernardetia sp. MNP-M8

ncbi_submitter: Korea research  institute of Bioscience  and Biotechnology


ncbi_country: Netherlands

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universiteit van Amsterdam


ncbi_country: Greece

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: bioMerieux


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Paenibacillus sp. FSL H7-0756

ncbi_submitter: Penn State


ncbi_country: South Africa

ncbi_isolation_source: Blood culture

ncbi_submitter: National Institute for Communicable Disease


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: CA

ncbi_isolation_source: mushroom

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacillus cereus group sp. BceL297

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL297


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-409-N21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: NIAB East Malling Research


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudoalteromonas sp. SR44-5

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Capital Region of Denmark

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Slagelse Hospital


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Samoa

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Dorea longicatena

ncbi_submitter: EMG


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Clear Lake; CA

ncbi_isolation_source: Dolichospermum enrichment culture inoculated with lake water from cyanobacterial bloom

ncbi_organism_name: Dolichospermum circinale Clear-D4

ncbi_submitter: University of Southern California


ncbi_isolate: blood

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: blood

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_organism_name: Streptomyces sp. NRRL F-3273

ncbi_strain_identifiers: NRRL F-3273

ncbi_submitter: University of Illinois


ncbi_country: Argentina: Bariloche; Rio negro Province

ncbi_organism_name: Brucella ovis IntaBari-2006-46-332

ncbi_submitter: Broad Institute


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BGI-Shenzhen


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Medical Center Goettingen


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: USA: Great Boiling Spring; Gerlach; NV

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Candidatus Fervidibacter sacchari

ncbi_submitter: University of Nevada, Las Vegas

ncbi_taxonomy: d__Bacteria;p__Candidatus Fervidibacterota;c__;o__;f__;g__Candidatus Fervidibacter;s__Candidatus Fervidibacter sacchari

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;s__Candidatus Fervidibacter sacchari


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: uncultured Aquihabitans sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Methylobacterium sp. NPDC097169

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Ottowia sp.

ncbi_submitter: EMG


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-0210

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Brazil:Sao Paulo; Sao Bernardo do Campo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Nesterenkonia massiliensis

ncbi_submitter: ebi


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD2_bin-1623

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Holophagaceae bacterium


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_organism_name: Micropepsaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Atlantic Ocean: Norwegian Sea; Soria Moria Vent Field Gallionella Garden

ncbi_isolation_source: biosyringe of iron mat from hydrothermal vent

ncbi_organism_name: Mariprofundus sp.

ncbi_submitter: University of Bergen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: poisoned food

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: University of Malaga


ncbi_organism_name: Streptomyces sp. B22F1

ncbi_submitter: Ondokuz Mayis university


ncbi_country: Peru: Lima

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: stool

ncbi_organism_name: Stenotrophomonas sp. HMSC10F07

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Tibet; Nyingchi

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Rainer Borriss's shared submissions


ncbi_isolation_source: Factory - Balestore

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_submitter: China Agricultural University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: USA: NY

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: France: Languedoc-Roussilon

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured Sutterella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_assembly_name: B.cereus WGS Assembly

ncbi_isolation_source: tracheobronchial aspiration

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Dokdonella sp.

ncbi_submitter: stanford university school of medicine


gtdb_type_species_of_genus: t

ncbi_organism_name: Parabacteroides distasonis ATCC 8503

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis ATCC 8503


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: activated sludge

ncbi_organism_name: Flavobacterium sp. N1846

ncbi_submitter: Jeju National University


ncbi_country: Montenegro: Kotor

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha lotti

ncbi_submitter: University of California, Davis


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 2

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: University of Glasgow


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_41_32


ncbi_country: Morocco

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: MedBiotech laboratory, faculty of medicine and pharmacy, rabat/ Mohamed V university rabat


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfuricella sp.

ncbi_submitter: University of Waterloo


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-04469

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Caldilinea sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pedobacter sp. AK013


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_isolation_source: vaginal

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: SC


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Turkmenistan: Darvaz

ncbi_isolation_source: Desert soil

ncbi_organism_name: Micromonospora sp. KC207

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: AL

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Escherichia coli

ncbi_submitter: King Abdulaziz University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H64303

ncbi_submitter: Broad Institute


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Melioribacter sp.

ncbi_submitter: The University of Auckland


ncbi_country: China: Taizhou

ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia sp. R5

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: Russia: Leningrad region

ncbi_isolation_source: Clover nodules

ncbi_organism_name: Rhizobium leguminosarum bv. trifolii

ncbi_submitter: ARRIAM


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Lishizhenia tianjinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Raw Chicken

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_submitter: University of Alberta


ncbi_country: China: Hangzhou

ncbi_isolation_source: anal swab

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Steroidobacter sp.

ncbi_submitter: CAU


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterocloster sp. 210928-DFI.2.20

ncbi_submitter: University of Chicago


ncbi_isolate: HCA4 bin20

ncbi_organism_name: Succinivibrio sp.

ncbi_strain_identifiers: HCA4 bin20

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bartonella grahamii

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_country: South Korea: Yeongdeok

ncbi_isolation_source: seawater

ncbi_organism_name: Winogradskyella aurantiaca

ncbi_submitter: Inha University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Gallicola sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: China

ncbi_isolation_source: Paediatrics

ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Anaeromyxobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Curvibacter delicatus NBRC 14919

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Brucella abortus NI649

ncbi_submitter: Broad Institute


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: University of Queensland


ncbi_country: Qatar

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Qatar University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli MP021017.12

ncbi_submitter: IGS


ncbi_isolation_source: Caecum

ncbi_organism_name: Pediococcus pentosaceus


ncbi_country: USA: MS

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR3762


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: ZMF

ncbi_submitter: Enze Hospital


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: deep sea sediment sample 4871-20 in thermophilic enrichment culture

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Janthinobacterium sp. ZB1P44

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Alistipes avistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Coprococcus phoceensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Oligoflexales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Senegalimassilia anaerobia


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-1152

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Clostridia bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Agathobaculum butyriciproducens


ncbi_organism_name: Neorhizobium sp. DAR64862/K0K3

ncbi_submitter: The University of Adelaide


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: yogurt

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_assembly_name: Shimia sp. strain Alg240-R146

ncbi_organism_name: Shimia sp. Alg240-R146

ncbi_submitter: iBB-IST


ncbi_country: USA: RI

ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. RI-11-014319


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: sputum

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan Agricultural University


ncbi_country: China: Yunnan province

ncbi_isolation_source: Pu er tea

ncbi_organism_name: Pueribacillus theae

ncbi_submitter: Shanghai University


ncbi_isolate: Urine

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: NILS76:B2;O16:H5;STw 131;STp 506;Urine

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UFMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Proteus terrae

ncbi_submitter: Quanzhou Women's and Children's Hospital


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: Italy

ncbi_isolation_source: salmon

ncbi_submitter: FDA


ncbi_country: Poland

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_isolation_source: cold seep

ncbi_organism_name: Photobacterium frigidiphilum

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1236

ncbi_submitter: Broad Institute


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Sandarakinorhabdus fusca

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus cereus group sp. MYBK71-2

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK71-2


ncbi_country: China

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Yellow Sea Fisheries Research Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Turkey

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: USAMRIID


ncbi_assembly_name: IMG-taxon 2667527436 annotated assembly

ncbi_organism_name: Pseudorhodobacter antarcticus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola coprocola


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Montreal

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium UBA6854

ncbi_submitter: University of Queensland


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio sp. Isolate32

ncbi_submitter: NSW Department of Primary Industries


ncbi_country: Thailand

ncbi_isolation_source: wound

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Lethbridge Research and Development Centre


ncbi_country: Germany

ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: CVUAS 11487

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Norway: Bergen

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_submitter: Broad Institute


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolate: AOP17_E1_surf _bin _12

ncbi_organism_name: Pseudomonas helleri

ncbi_strain_identifiers: AOP17_E1_surf _bin _12

ncbi_submitter: Genoscope


ncbi_country: China: Zhejiang

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Salmonella enterica CVM N44710 v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Pork Chops

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolate: AOP36_E1_surf _bin _14

ncbi_organism_name: Brevibacterium yomogidense

ncbi_strain_identifiers: AOP36_E1_surf _bin _14


ncbi_country: China: Shandong

ncbi_isolation_source: goat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Planktothrix rubescens PR223

ncbi_submitter: Bowling green State university


ncbi_organism_name: Kribbellaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: France: Toulouse

ncbi_isolation_source: Expectoration

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: French National Center for Antibiotics Resistance


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CQPMC-KpYD

ncbi_submitter: Chongqing Medical University


ncbi_country: USA: Evanston; Illinois

ncbi_isolation_source: Lake Michigan water

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Mali

ncbi_isolation_source: breast milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IHU Genomes


ncbi_isolation_source: ballast tank

ncbi_organism_name: Alloalcanivorax xenomutans

ncbi_submitter: Shandong university


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudocitrobacter faecalis

ncbi_submitter: Faculty of Health Sciences


ncbi_isolation_source: food

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_country: Cameroon: Boteva

ncbi_isolation_source: Cocoyam rhizosphere (white)

ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: KU Leuven


ncbi_organism_name: Prevotella sp. UBA6447

ncbi_submitter: University of Queensland


ncbi_organism_name: Clavibacter michiganensis

ncbi_strain_identifiers: CFBP 7493

ncbi_submitter: Shiraz University


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USFDA


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Planomicrobium sp. MB-3u-38

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: IMG-taxon 2639762579 annotated assembly

ncbi_organism_name: Microbacterium azadirachtae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: UFRGS


ncbi_organism_name: Streptomyces noursei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Salmonella sp. s30044

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Coxiellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. YGL11-2

ncbi_submitter: Hainan University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salmonella sp. NW398

ncbi_submitter: Sichuan University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_submitter: AAFC


ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Amycolatopsis sp. NPDC059235


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA3356

ncbi_submitter: University of Queensland


ncbi_country: Puerto Rico: Canas

ncbi_isolation_source: Shallow well water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Oman: Somail Ophiolite

ncbi_isolation_source: Water sample from WAB188 Well

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paenibacillus sp. FSL W8-0439

ncbi_submitter: Penn State


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium CG2_30_45_14


ncbi_isolation_source: lake water

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Wageningen University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Arizona

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apis

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_country: China: Beijing

ncbi_isolation_source: infected leaves

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Yersinia pestis CMCC43032

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: Halomonas sp. PAR7

ncbi_submitter: Griffith University


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Fimicola merdigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Fimicola;s__Candidatus Fimicola merdigallinarum


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_country: Indonesia: Pariaman region in Sumatra

ncbi_isolation_source: skin lesion

ncbi_organism_name: Treponema pallidum subsp. pertenue

ncbi_strain_identifiers: Kampung Dalan K363

ncbi_submitter: Masaryk University, Faculty of Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: NC

ncbi_isolation_source: Clinical Isolate

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Streptomyces sp. NPDC050400

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: New York

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MSKCC


ncbi_organism_name: Succinatimonas sp. CAG:777

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Hungary: Debrecen

ncbi_isolation_source: Bird

ncbi_organism_name: Escherichia coli

ncbi_submitter: Debreceni Egyetem


ncbi_organism_name: Citrobacter sp. Cf078

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Malaysia: Sg. Buloh

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_organism_name: Capnocytophaga granulosa


ncbi_country: Canada: Alberta

ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: University of Florida


ncbi_isolation_source: feces

ncbi_submitter: USDA


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptomyces sp. NBC_00455

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Nocardioides humi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya

ncbi_organism_name: Christensenella sp. UBA7868

ncbi_submitter: University of Queensland


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: China

ncbi_isolation_source: Yunnan; China

ncbi_organism_name: Leptospira weilii

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: China: Anhui; Tongling

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Chitinophagia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Singapore

ncbi_isolation_source: Gastric biopsy tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National University of Singapore


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Liaoning

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nevskiaceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: University of Connecticut Graf Lab


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Menzies School of Health Research


ncbi_country: Finland: Helsinki

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr Insitute of Microbiology


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Jilin

ncbi_isolation_source: meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_country: USA

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: fecal composite

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Chicago


ncbi_isolation_source: unknown

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Marivita sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EBI


ncbi_country: China: Wuhu Polymetallic Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_organism_name: bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Acinetobacter tjernbergiae

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Inhella sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: Anaeromassilibacillus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Szeged


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome RUG13539

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Paenibacillus sp. FSL P2-0322

ncbi_submitter: Penn State


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Streptococcus agalactiae


ncbi_organism_name: Candidatus Alistipes stercorigallinarum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Chile: Los Lagos region

ncbi_isolation_source: isolated from fish farm

ncbi_organism_name: Epilithonimonas ginsengisoli

ncbi_submitter: Universidad Catolica del Norte


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Candidatus Bilophila faecipullorum


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Christiangramia sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Academia Sinica


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterocloster clostridioformis


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_submitter: Faculty of Pharmacy Mahidol University


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Anaerobiospirillum sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: IMG-taxon 2698536701 annotated assembly

ncbi_organism_name: Vannielia litorea

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG12247

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Photobacterium lutimaris

ncbi_submitter: FDA/CFSAN


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas amygdali pv. morsprunorum

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. morsprunorum


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: rectal swab

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0109

ncbi_submitter: Broad Institute


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_country: China: Guangdong province

ncbi_isolation_source: nasopharyngeal swabs

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Catenulispora subtropica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Paraglaciecola sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Xanthomonas protegens

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: China: Zhejiang

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: Bahamas: Bimini

ncbi_isolation_source: Plexaura sp

ncbi_organism_name: Endozoicomonas gorgoniicola

ncbi_submitter: Academia sinica


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Rhagonycha fulva


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Chile: Altiplano at the Andes Mountain; Tarapaca Region; North of Chile

ncbi_organism_name: Exiguobacterium aurantiacum

ncbi_submitter: Universidad Arturo Prat

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium aurantiacum


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Emergencia sp.


ncbi_isolation_source: soft tissue (knee)

ncbi_organism_name: Mycobacteroides abscessus ATCC 19977

ncbi_submitter: University of Georgia


ncbi_country: USA:New York Ontario

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: Cornell University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Japan: Gifu

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Bacillus sp. AM1(2019)

ncbi_submitter: Basel university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AM1(2019)


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_country: Antarctica

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudoalteromonas sp. SWN166

ncbi_submitter: Shandong University


ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_country: Spain

ncbi_isolation_source: brines of olives

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Instituto de la Grasa-CSIC


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: agarose-chitosan mix 40-100 m particle (artificial) mid colonization

ncbi_organism_name: Shimia thalassica

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;o__Candidatus Tepidiaquacellales;x__unclassified Candidatus Tepidiaquacellales;s__Candidatus Tepidiaquacellales bacterium UBA6667


ncbi_country: Israel

ncbi_isolation_source: Mud

ncbi_organism_name: Lysinibacillus sp. D4B2_S17

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Senegal

ncbi_isolation_source: host stool sample

ncbi_organism_name: Kurthia sp. Dielmo

ncbi_strain_identifiers: Dielmo

ncbi_submitter: laboratoire URMITE CNRS 6236


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen