ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 30 days

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Shantou University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: China: Guangxi; Wuyi

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: sediment

ncbi_organism_name: Achromobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Anaerocaecibacter sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: USA: International Space Station

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Chile: Santiago

ncbi_strain_identifiers: AFA 115

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: phlegm

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_level: Scaffold

ncbi_assembly_name: Rumen uncultured genome RUG14069

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


gtdb_representative: t

ncbi_organism_name: Fibrobacter sp. UWR4

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: Baltimore

ncbi_isolation_source: patient fluids

ncbi_submitter: Johns Hopkins University


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: sputum

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_strain_identifiers: CYZ

ncbi_submitter: Hebei Medical University


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: urine

ncbi_submitter: Charles University


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_assembly_level: Chromosome

ncbi_country: Malawi

ncbi_organism_name: Xanthomonas cassavae CFBP 4642

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: CFBP 4642

ncbi_submitter: French Network on Xanthomonads

ncbi_type_material_designation: assembly from type material


ncbi_country: Namibia

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Aarhus Universitet


ncbi_country: USA: New Orleans; LA

ncbi_isolation_source: Neck/Axilla

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0263R

ncbi_submitter: Broad Institute


ncbi_country: Mexico

ncbi_isolation_source: river water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pomona


ncbi_country: China: Fujian

ncbi_organism_name: Acinetobacter sp. YH12070

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: Germany: exploratory Schorfheide-Chorin

ncbi_isolation_source: grassland soil

ncbi_organism_name: Agromyces atrinae

ncbi_submitter: Exploratories for large-scale and long-term functional biodiversity research


gtdb_type_species_of_genus: t

ncbi_country: Taiwan

ncbi_isolation_source: Shrimp pastes

ncbi_organism_name: Allobacillus halotolerans

ncbi_submitter: Chulalongkorn University


ncbi_isolation_source: Human

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Streptomyces griseoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Malaysia

ncbi_isolation_source: marine water

ncbi_organism_name: Vibrio variabilis

ncbi_submitter: University of Malaya


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Enterococcus sp. DIV0370


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Beltsville; MD

ncbi_organism_name: Spiroplasma tabanidicola

ncbi_submitter: Academia Sinica


ncbi_submitter: Quadram Institutte


ncbi_country: Italy: Sienna

ncbi_isolation_source: Surveillance

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: University of Utah


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Micrococcus luteus


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: BIT Mesra Ranchi-835215


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Huainan Normal University


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Bern


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Methylobacter sp.


ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of Bristol


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite de Limoges


ncbi_country: China: Guangdong

ncbi_isolation_source: pig fecal swab

ncbi_submitter: China Agricultural University


ncbi_assembly_name: IMG-taxon 2636416169 annotated assembly

ncbi_organism_name: Pseudomonas libanensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_isolation_source: rectal swab from healthy college student

ncbi_submitter: Santa Clara University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Pseudomonas sp. AA4

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: Shanghai Ocean University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Notiophilus biguttatus


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Bacillota bacterium


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Kandleria vitulina

ncbi_submitter: University of Queensland


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;s__Candidatus Colwellbacteria bacterium RIFCSPLOWO2_01_FULL_48_10


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Allobaculum mucilyticum

ncbi_submitter: UMC Utrecht


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1400

ncbi_submitter: Broad Institute


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1440750

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG14509

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: bioreactor

ncbi_organism_name: Epsilonproteobacteria bacterium UBA2440


ncbi_isolation_source: unknown

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Xinjiang; Tianshan Mountain

ncbi_isolation_source: soil

ncbi_organism_name: Montanilutibacter psychrotolerans

ncbi_submitter: Lanzhou university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: EMG


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: Durham; NC

ncbi_isolation_source: urine; straight cath

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Alabama in Huntsville


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acetobacter sp.


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_organism_name: Moraxella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_assembly_name: Isolate 18

ncbi_isolate: Isolate 18

ncbi_isolation_source: blood culture

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Isolate 18

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Switzerland

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: feces

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: University of Bern


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; MPn+N+C amendment

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: University of Montana


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Nocardia farcinica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Capnocytophaga sputigena

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: farm environment; wall

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Rectal surveillance swabs

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Aarhus University


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pseudomonas marincola

ncbi_submitter: UNIVERSIDAD DE CHILE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_country: Colombia: Antioquia

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Sphingomonas faeni

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: Australia: Brisbane

ncbi_organism_name: Roseburia faecis

ncbi_submitter: The University of Queensland


ncbi_country: Spain: Barcelona

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: Surface Water (Environmental)

ncbi_organism_name: Vibrio cholerae O139

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces sp. NRRL F-3307

ncbi_strain_identifiers: NRRL F-3307

ncbi_submitter: University of Illinois


ncbi_country: Canada: Pekisko; AB

ncbi_isolation_source: soil

ncbi_organism_name: Amycolatopsis sp. WAC 01375

ncbi_submitter: McMaster University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: Australia: WA; Badgingarra

ncbi_organism_name: Mesorhizobium sp. B2-5-5

ncbi_submitter: Curtin University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: BGI


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Serratia sp. CY31527

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY31527


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Salmonella sp. NW180

ncbi_submitter: Sichuan University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Flavobacterium sp. FlaQc-52

ncbi_submitter: Universite Laval


ncbi_organism_name: Nocardia sp. JW2

ncbi_submitter: Euromed University of Fes


ncbi_organism_name: Anaerocaecibacter muris

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_assembly_name: freshwater MAG --- Loc090116-7m_bin-1128

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: Netherlands: Ooijpolder

ncbi_isolation_source: biomass on anode of bioreactor after 21 days

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Radboud University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces


ncbi_country: Australia: Newcastle

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome


ncbi_country: China: Anhui

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Candidatus Obscuribacter sp.

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;x__unclassified Candidatus Obscuribacter;s__Candidatus Obscuribacter sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Sudan

ncbi_strain_identifiers: CFBP 3836

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas euvesicatoria;x__Xanthomonas euvesicatoria pv. alfalfae;x__Xanthomonas euvesicatoria pv. alfalfae CFBP 3836

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Domibacillus tundrae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pseudarthrobacter sp. CCNWLW247

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_organism_name: Salmonella sp. s55431

ncbi_submitter: Zhejiang university


ncbi_country: Taiwan: Lyudao

ncbi_isolation_source: green sulfur bacteria endolithic enrichment culture

ncbi_organism_name: Halodesulfovibrio sp.

ncbi_submitter: Academia Sinica


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC094038

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Poland: Ruda Slaska

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: National Medicines Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chlamydia pneumoniae AR39

ncbi_submitter: TIGR


ncbi_organism_name: Endozoicomonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Barkul village near Chilika Lake

ncbi_organism_name: Streptomyces barkulensis

ncbi_submitter: Tarim University


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: bacterium 19MO03SA05

ncbi_submitter: FDA-CVM


ncbi_country: France: (73)

ncbi_isolation_source: milk (mastitis)

ncbi_organism_name: Mycoplasmopsis agalactiae

ncbi_submitter: INRAE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: United Kingdom: Hatchlands

ncbi_isolation_source: Oak rhizosphere soil

ncbi_organism_name: Dryocola clanedunensis

ncbi_submitter: UWE


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Central venous access devices

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Tepidiformaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: uncultured Succinatimonas sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcaceae bacterium AF10-16

ncbi_submitter: BGI


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yangpu Bay; Hainan

ncbi_organism_name: Roseovarius spongiae

ncbi_submitter: Xiamen Medical College


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptomyces thinghirensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudoalteromonas sp. SG44-5

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Hong Kong

ncbi_isolation_source: biofilm full-scale rotating biological contactor (RBC)

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Fictibacillus sp. BK138

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Niger

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 2002038

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Pacific Ocean: Munida Microbial Observatory Time Series

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: VA

ncbi_isolation_source: Cotton plant

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Japan: Okayama

ncbi_isolation_source: Laboratory

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Rutgers School of Dental Medicine


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_assembly_name: Rumen uncultured genome RUG12301

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Auckland


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA4831

ncbi_submitter: University of Queensland


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG11634

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter sp. MIT 01-3238

ncbi_submitter: MIT


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bicetre hospital


ncbi_country: Peru: Lima

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: P029A17 case_3_IMD

ncbi_submitter: Instituto Nacional de Salud


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Ethiopia

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: University of Exeter


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Aeromonas sp. R3-1

ncbi_submitter: Hangzhou CDC


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Michigan


ncbi_submitter: Maimonides Biomedical Research Institute of Cordoba


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Streptomyces sp. DT73

ncbi_submitter: University of Liege


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bartonella sp. AP83NXGY

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces sp. NPDC056690

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Brachybacterium alimentarium

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Clostridioides difficile CD002

ncbi_submitter: LPBA


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:273

ncbi_submitter: DTU


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: South Carolina

ncbi_isolation_source: wastewater lagoon

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Environment and Climate Change Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Ningbo

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Colorado

ncbi_isolation_source: Abscess

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Helicobacter apodemus


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Spirochaetia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: Shenzhen People's Hospital


ncbi_submitter: Central Research Institute of Epidemiology


ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolate: VTEC

ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Trinidad and Tobago

ncbi_submitter: University of the West Indies


ncbi_country: Colombia: Sucre

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Thiomicrorhabdus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: United Kingdom:Midlands

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 109

ncbi_submitter: SC


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Methylobacterium organophilum

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: metagenome

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Detroit; Michigan; urban community garden

ncbi_isolation_source: vegetable

ncbi_organism_name: Pseudomonas atacamensis

ncbi_submitter: Wayne State University


ncbi_country: USA: MA; Boston

ncbi_submitter: Broad Institute


ncbi_organism_name: Paraburkholderia graminis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Peru

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Peribacillus butanolivorans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Cornell University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Guangdong Academy of Agricultural Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Anhui

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Austria

ncbi_isolation_source: wound

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: AGES


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Anaeromassilibacillus sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Urechidicola croceus

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Pseudomonas sp. NPDC089401

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Alberta


ncbi_country: France

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Greece

ncbi_isolation_source: CVC

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: RGNOSIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Oregon State University


ncbi_country: Australia

ncbi_isolation_source: rectal swab

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory, Melbourne


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG12334

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_country: Netherlands

ncbi_isolation_source: grass shoots

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wageningen University & Research


ncbi_country: Germany

ncbi_isolation_source: Coolant lubricant; Germany; Giessen

ncbi_organism_name: Corynebacterium lubricantis DSM 45231

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: bioMerieux


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-052-05_S3_C3

ncbi_submitter: IGS


ncbi_country: Singapore

ncbi_isolation_source: reservoir water

ncbi_organism_name: Achromobacter dolens

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Paragemmobacter ruber

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Minnesota Department of Health Infectious Disease Laboratory Submission Group


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Seoul Metropolitan Government Research Institute of Public Health and Environment


ncbi_organism_name: Nitratireductor aquimarinus

ncbi_submitter: Ocean University of China


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_assembly_name: freshwater MAG --- MJ120716A_bin-0943

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: Candidatus Onthomorpha sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Onthomorpha;x__unclassified Candidatus Onthomorpha;s__Candidatus Onthomorpha sp.


ncbi_organism_name: uncultured Eubacteriaceae bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The University of Adelaide


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA; Charles River

ncbi_organism_name: Pseudomonas sp. CH235

ncbi_submitter: University of British Columbia


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA

ncbi_isolation_source: pitcher plants

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: University of Georgia


ncbi_isolation_source: stool from botulism patient

ncbi_organism_name: Clostridium baratii

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus T12818

ncbi_submitter: Broad Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium RIFOXYA2_FULL_33_21


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Thalassospira sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Stenotrophomonas sp. 2694

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Suzhou

ncbi_organism_name: Enterococcus devriesei

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Actinophytocola algeriensis

ncbi_strain_identifiers: CECT 8960


ncbi_isolate: Brucella sp.

ncbi_isolation_source: Isolated from the gills of a bluespotted ribbontail ray (Taeniura lymma); captive bred; found dead at 16.09.2014; died in quarantine. Isolation of strain from gills only; other organs negative.

ncbi_organism_name: Brucella inopinata

ncbi_submitter: JLU


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: France: department 26

ncbi_isolation_source: laying hen farm

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Canada: Montreal

ncbi_isolation_source: Hospital sink

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Erwinia sp. SLM-02

ncbi_submitter: Seoul National University Hospital


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Norway

ncbi_isolation_source: cultured milk

ncbi_organism_name: Enterococcus hirae

ncbi_strain_identifiers: INF E1

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: China: Yunnan province

ncbi_organism_name: Herbiconiux daphne

ncbi_submitter: Institute of Medicinal Biotechnology


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Marseille

ncbi_organism_name: Akkermansia massiliensis

ncbi_submitter: Institut hospitalo-universitaire en maladies infectieuses de Marseillee


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Greenland: Scoresbysund

ncbi_isolation_source: gingival mucosa

ncbi_organism_name: Ursidibacter maritimus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: National Key Laboratory of Agricultural Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Italy: Venice

ncbi_isolation_source: marine sediment (ENVO:00002113)

ncbi_organism_name: Desulfobacter hydrogenophilus

ncbi_submitter: Aarhus University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Micromonospora arborensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Halanaerobium congolense

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Klebsiella oxytoca


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Pseudomonadales bacterium


ncbi_organism_name: Thioalkalivibrio sp. AKL6


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Streptococcus danieliae

ncbi_submitter: King's College London


ncbi_organism_name: Photorhabdus sp. S12-55

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Cupriavidus pauculus

ncbi_strain_identifiers: MSL 348

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: EPFL


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Clear Labs, Inc.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0001

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken caecal content

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Microcoleus sp. S1D4

ncbi_submitter: Palacky University Olomouc


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_assembly_name: freshwater SAG --- SB-2103-1070-K9

ncbi_isolation_source: freshwater

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Fujian

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: USA: MD

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Qinghai; Tibet Plateau

ncbi_organism_name: Nocardioides yefusunii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: BGI


ncbi_country: China: Zhejiang

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Municipal Hospital Affiliated to Taizhou University


ncbi_country: France

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Psychroflexus lacisalsi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Chitinophaga sp. CCNWLY40

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_organism_name: Thermosynechococcus sp. HY591

ncbi_submitter: Academia Sinica


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_J_9

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. SAL4439

ncbi_submitter: Zhejiang university


ncbi_organism_name: Serratia sp. CY82433

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY82433


ncbi_organism_name: Anaeromassilibacillus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Psychrobacter glacincola

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: DC

ncbi_isolation_source: Urine Catheter

ncbi_organism_name: Proteus vulgaris

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Flintibacter sp.

ncbi_submitter: AAFC


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Seoul National University


ncbi_organism_name: Bacteroides uniformis dnLKV2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Phytoplasma stylosanthis

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrVIII (Loofah witches'-broom group);s__Candidatus Phytoplasma stylosanthis


ncbi_assembly_name: freshwater MAG --- VK_bin-2658

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Mexico: Navolato; Sinaloa

ncbi_isolation_source: Culiacan River; Iraguato

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: air

ncbi_organism_name: Bradyrhizobium sp. Leaf401

ncbi_submitter: ETH ZURICH


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Emory University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_organism_name: Pectobacterium actinidiae

ncbi_strain_identifiers: ICMP 9972

ncbi_submitter: Plant & Food Research


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: CA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA/CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_strain_identifiers: WHRI 5234

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Acetobacter sp. JWB

ncbi_strain_identifiers: JWB

ncbi_submitter: Kyung Hee University


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Northeastern University


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Phocaeicola intestinalis

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Paracoccus sp. UBA4165

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. UBA4165


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Pseudomonas soli

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Senegal: Belair

ncbi_isolation_source: Groundnut Field

ncbi_organism_name: Bradyrhizobium sp. ISRA464

ncbi_submitter: IRD


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_strain_identifiers: Xcv DC 96-2

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: AAFC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0679

ncbi_submitter: Broad Institute


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_submitter: The University Hong Kong


ncbi_isolate: metabat2_pooled_metaflye.995 MAG

ncbi_organism_name: Enteroscipio rubneri

ncbi_strain_identifiers: metabat2_pooled_metaflye.995 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Campylobacter coli

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2595698210 annotated assembly

ncbi_organism_name: Sphingobacterium nematocida

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: [Clostridium] scindens


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Hungatella sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: California

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: Washington State University Vancouver


ncbi_country: USA: Louisiana

ncbi_isolation_source: sugarcane mill mud

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Wells College


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: poultry meat product

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Clear Labs, Inc.


ncbi_country: Lithuania: Vilnius City Municipality

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Estudios Fotosinteticos y Bioquimicos


ncbi_organism_name: Klebsiella sp. JN_Kp126

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Phycisphaerales bacterium


ncbi_submitter: University of Alabama Birmingham


ncbi_country: USA: Ohio

ncbi_isolation_source: sputum

ncbi_submitter: JCVI


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coprococcus sp. AM97-35

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Boston; MA; USA

ncbi_organism_name: Staphylococcus aureus M1232

ncbi_submitter: Broad Institute


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: CT

ncbi_isolation_source: ground turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. 21381


ncbi_assembly_name: Rumen uncultured genome RUG13314

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Indian Ocean

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pontivivens nitratireducens

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources, P. R. China


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Neisseria lisongii

ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: Germany: Castle ruin Eutinger Tal; Eutingen im Gaeu

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. Isolate_219

ncbi_submitter: Leibniz-HKI


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_organism_name: Streptomyces lavendulae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_submitter: Northeastern University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Czechoslovakia

ncbi_isolation_source: Cooling tower water

ncbi_organism_name: Legionella brunensis

ncbi_submitter: Tel Aviv University


ncbi_country: USA: Mill Creek; Montoursville; PA

ncbi_isolation_source: freshwater

ncbi_organism_name: Pedobacter sp. MC2016-14

ncbi_submitter: Lycoming College


ncbi_country: Japan: Yokohama

ncbi_isolation_source: gut tissue

ncbi_organism_name: Gilliamella sp. ESL0405

ncbi_submitter: University of Lausanne


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter heilmannii

ncbi_submitter: University of Antwerp, Belgium


ncbi_organism_name: Aliarcobacter butzleri RM4018

ncbi_submitter: USDA - Agricultural Research Service, USA


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Salmonella sp. NW1092

ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Kocuria nitroreducens

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: Pseudochrobactrum sp. MP213Fo

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dialister succinatiphilus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. s55408

ncbi_submitter: Zhejiang university


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Small intestine

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7193

ncbi_submitter: University of Queensland


ncbi_isolation_source: Wyoming Soil

ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: Ohio State university


ncbi_organism_name: Streptomyces albidoflavus


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: KRIBB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: LMU Munich


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF02-47

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Sichuan

ncbi_isolation_source: swine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Belgium: Woluwe river

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Russia: Dagestan

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_country: Japan

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Hanamia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Rhodocyclaceae bacterium


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: sputum

ncbi_submitter: unverisity medical center groningen


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T24515


ncbi_organism_name: Stutzerimonas kunmingensis


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Switzerland

ncbi_organism_name: Campylobacter coli H9

ncbi_submitter: Cornell University


ncbi_isolation_source: human gut

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: EMG


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Italy

ncbi_submitter: Sapienza University of Rome


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Calidihabitans;s__Candidatus Calidihabitans tengchongensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Calidihabitans;s__Candidatus Calidihabitans tengchongensis


ncbi_country: Czech Republic

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Faculty of Science, Masaryk University


ncbi_country: Germany: Cuxhaven

ncbi_isolation_source: Lohmann Animal Health

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Elanco Animal Health


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_country: Kenya

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri S5644

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: USA: MD

ncbi_organism_name: Shigella dysenteriae

ncbi_strain_identifiers: DMB SH20198

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Instituto de Quimica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Umea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8866

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Egerieicola pullicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Egerieicola;s__Candidatus Egerieicola pullicola


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagaceae bacterium UBA4413

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Vibrio brasiliensis LMG 20546

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio oreintalis group;s__Vibrio brasiliensis;x__Vibrio brasiliensis LMG 20546


ncbi_assembly_name: Rumen uncultured genome RUG11889

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Priestia megaterium

ncbi_strain_identifiers: CCMM B599

ncbi_submitter: National Centre for Scientific and Technical Research


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Klebsiella michiganensis


ncbi_submitter: Christian Medical College


ncbi_country: China: Nanchang; Poyang Lake

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: South Korea: Suwon

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobium sp. TB-6

ncbi_submitter: Kyonggi University


ncbi_organism_name: Tannerellaceae bacterium 33-180

ncbi_submitter: Nanjing University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: uncultured Sulfuritalea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Morganella morganii

ncbi_submitter: Youjiang Medical University for Nationalities


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Candidatus Avidehalobacter sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Peptococcaceae;x__Peptococcaceae incertae sedis;g__Candidatus Avidehalobacter;x__unclassified Candidatus Avidehalobacter;s__Candidatus Avidehalobacter sp.


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Salmonella sp. 741265096_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Streptomyces sp. NPDC090106


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium bifidum


ncbi_country: Germany: Greifswald

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_isolation_source: Wound Left Shoulder NON OPERATED PRE INCISION

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Canada: Lacombe

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Geobacteraceae bacterium GWC2_55_20

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Tyzzerella sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Vescimonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Fudan University


ncbi_country: USA: Hanover NH Dartmouth

ncbi_submitter: University of New Hampshire


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_country: Australia

ncbi_isolation_source: Carriage sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sydney


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: uncultured Thiothrix sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B411;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA: OH

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: Photorhabdus akhurstii

ncbi_submitter: University of Bern


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: United Kingdom

ncbi_isolation_source: Animal feed

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Johannesburg;x__Salmonella enterica subsp. enterica serovar Johannesburg str. ST203


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_country: France: Normandy

ncbi_isolation_source: auricular

ncbi_submitter: LABEO


ncbi_organism_name: uncultured Mailhella sp.


ncbi_assembly_name: Rumen uncultured genome RUG11342

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Australia: Roxby Downs; South Australia; South Australian Desert

ncbi_isolate: SAD bin10

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: SAD bin10

ncbi_submitter: Monash University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_country: USA: Texas

ncbi_organism_name: Pseudomonas fluvialis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Stenotrophomonas sp.


ncbi_isolation_source: rye sourdough

ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Korea University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: US Food and Drug Administration


ncbi_country: New Zealand: Waikato

ncbi_isolation_source: Pernasal

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Portugal: Porto

ncbi_isolation_source: Urinary Tract Infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Stockholm University