ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA: California; Calistoga

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


gtdb_representative: f

ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_assembly_level: Contig

ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: University of Alberta


ncbi_country: Switzerland

ncbi_isolation_source: Powdered infant formula

ncbi_organism_name: Mixta gaviniae

ncbi_submitter: University of Pretoria

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: China: Weihai

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Yellow Sea Fisheries Research Institute


ncbi_organism_name: Bacillus cereus

ncbi_submitter: SC


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Yonsei University


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_assembly_name: freshwater MAG --- F14_bin-1283

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Sichuan University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_assembly_name: Parendozoicomonas sp. strain Alg238-R29

ncbi_organism_name: Parendozoicomonas sp. Alg238-R29

ncbi_submitter: iBB-IST


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Henan


ncbi_country: Russia: Kamchatka

ncbi_isolation_source: environmental

ncbi_organism_name: Carboxydocella thermautotrophica

ncbi_submitter: Immanuel Kant Baltic Federal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVI. Incertae Sedis;g__Carboxydocella;s__Carboxydocella thermautotrophica


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Aalborg University


ncbi_country: China: Beijing

ncbi_isolation_source: Chinese traditional pickle

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Chinese Center of Disease Control and Prevention


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bradyrhizobium sp. SZCCHNS30581

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Texas Tech University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola plebeius


ncbi_isolation_source: marine

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_country: Canada

ncbi_isolation_source: Pig intestine; gut of a piglet

ncbi_organism_name: Enterococcus villorum

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: raw oyster

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Norwich;x__Salmonella enterica subsp. enterica serovar Norwich str. CFSAN001077


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_isolation_source: ileum

ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: University of Minnesota


ncbi_country: Spain: Asturias

ncbi_organism_name: Micrococcaceae bacterium

ncbi_submitter: Universidad de Leon (Spain)


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 286


ncbi_isolation_source: spacecraft surface

ncbi_organism_name: Paenibacillus camelliae

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: TA 29

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: USA: MA; Boston

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Broad Institute


ncbi_country: Germany: Frankfurt am Main

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Polaribacter filamentus

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Australia: WA; Brokton

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. BR1-1-15

ncbi_submitter: Curtin University


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Mucosal surface Ascending Colon

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: UNC-Chapel Hill


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China: Shenzhen

ncbi_organism_name: Clostridium sp. OM05-6BH

ncbi_submitter: BGI


ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_country: Mexico

ncbi_isolation_source: Bronchial

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNAM


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Centre International de Recherche en Infectiologie


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter felis

ncbi_submitter: University of Antwerp, Belgium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Stockholm University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Institut Pasteur de Madagascar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Anaeromyxobacter dehalogenans

ncbi_submitter: University Duisburg-Essen


ncbi_country: Italy: Milano

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_country: India

ncbi_isolation_source: fish intestine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Silvibacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Wheeler Co.; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Angola

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Veterinary Medicine University of Vienna


ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Candidatus Delongbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Delongiibacteriota;x__unclassified Candidatus Delongbacteria;s__Candidatus Delongbacteria bacterium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ruminococcus sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Romania

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis 2229BH

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Streptomyces sp. NPDC088707

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia sp. WS1041

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Candidatus Methylopumilus planktonicus

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Collinsella sp. SGI.178

ncbi_submitter: University of Manitoba


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Thiohalophilus sp.


ncbi_organism_name: Flavobacterium gossypii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Rumen uncultured genome RUG12958

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Mariniplasma sp.


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptococcus agalactiae MRI Z1-215

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: terrestrial

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Brenneribacteriota;s__Candidatus Brennerbacteria bacterium RIFOXYC1_FULL_41_11


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacillus mycoides

ncbi_strain_identifiers: ADRIA I21

ncbi_submitter: INRA-MIG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces ossamyceticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: soil

ncbi_organism_name: Sorangium cellulosum

ncbi_strain_identifiers: So ceGT47

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-1695

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: Georgia

ncbi_isolation_source: week A6 calf 143 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_country: New Zealand

ncbi_submitter: Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mississippi


ncbi_country: Colombia: Medellin

ncbi_submitter: Universidad El Bosque


ncbi_country: Colombia: Bogota

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Thermomicrobiales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: solid retention time of 6 days

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: Nepal: Sukraraj

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Armed Forces Research Institute of Medical Sciences (AFRIMS)


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacteroides fragilis CL03T12C07

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_country: Norway: Vest Spitsbergen

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas arctica A 37-1-2

ncbi_submitter: Shandong University


ncbi_country: Morocco: Fes-Boulemane

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: France

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: Bacillus cereus group sp. BC241

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC241


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: California

ncbi_isolation_source: cow with mastitis

ncbi_organism_name: Mycoplasmopsis californica

ncbi_submitter: University of Missouri - Columbia


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: clinical

ncbi_submitter: University of Alberta


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: Ghana:Bolgatanga District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flammeovirgaceae bacterium

ncbi_submitter: EMG


ncbi_country: Sri Lanka:Anuradhapura

ncbi_isolation_source: blood

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Rajarata University of Sri lanka


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Japan: Ibaraki; Tsukuba; AIST campus

ncbi_isolate: SMTERVAC

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: SMTERVAC

ncbi_submitter: John McCutcheon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Lacombe

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: AAFC


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA:California San Luis Obispo

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 2; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universiteit Antwerpen


ncbi_country: Peru: Lima

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Lactobacillus sp. L.sR5

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: The First Affiliated Hospital, Jiangxi Medical College, Nanchang University


ncbi_country: Norway: Trondelag

ncbi_isolation_source: salmon tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_country: United Kingdom: Hatchlands

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Leclercia tamurae

ncbi_submitter: UWE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_organism_name: Streptomyces stelliscabiei

ncbi_submitter: Oregon State University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Chicago


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W16013

ncbi_submitter: Broad Institute


ncbi_country: Portugal: Lousa

ncbi_isolation_source: feces

ncbi_submitter: University of Aveiro


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacteroides abscessus


ncbi_country: Belgium

ncbi_isolation_source: mastitis

ncbi_submitter: KOlimastIR


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Veillonella parvula

ncbi_submitter: University of Washington


ncbi_country: France

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: CIRM BIA 1614

ncbi_submitter: Agroscope


ncbi_country: China: Xuzhou

ncbi_isolation_source: milking environment

ncbi_organism_name: Acinetobacter portensis

ncbi_submitter: Yangzhou University


ncbi_isolation_source: terrestrial

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Queensland


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: USFDA


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_submitter: ANSES


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: South Korea: Seoul

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Alcaligenes sp.

ncbi_submitter: University of South Africa


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: California; Cedars Spring

ncbi_isolation_source: spring water

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: Fibrobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: BGI-Shenzhen


ncbi_country: Germany

ncbi_isolation_source: Bream

ncbi_organism_name: Clostridium sp. ZBS3

ncbi_submitter: KULeuven


ncbi_country: Russia: Moscow

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: DC

ncbi_isolation_source: Urine clean catch

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Ireland

ncbi_isolation_source: infant

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University College Cork


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_assembly_name: freshwater MAG --- YR_bin-3871

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Beihai

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Paenibacillus peoriae

ncbi_submitter: Guangxi Minzu University


ncbi_organism_name: Amycolatopsis albidoflavus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Oxalobacter formigenes

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden

ncbi_isolation_source: bovine milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: skim milk powder (medium heat)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Teagasc Agriculture and Food Development Authority


ncbi_organism_name: Streptomyces canus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Guatemala

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Enterococcus faecalis


ncbi_country: Brazil: Jau

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: France

ncbi_isolation_source: PACA; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Sterolibacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cepheid


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Raw Chicken

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_country: China

ncbi_isolation_source: liver

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_assembly_name: freshwater MAG --- Loc081215-5m_bin-2239

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Nigeria

ncbi_isolation_source: chicken

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_country: India

ncbi_isolation_source: Diarrhea

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriales bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus argenteus

ncbi_strain_identifiers: ACVAD

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_assembly_name: De Novo assembly

ncbi_isolation_source: oil-contaminated beach sediment

ncbi_organism_name: Labrenzia sp. C1B10

ncbi_submitter: University of Illinois at Chicago


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Acinetobacter schindleri


ncbi_organism_name: Pseudoalteromonas distincta

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Geobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: zhejiang University


ncbi_country: USA: Davis city on Yolo county

ncbi_isolation_source: Biological material

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_organism_name: Streptomyces sp. NRRL S-515

ncbi_strain_identifiers: NRRL S-515

ncbi_submitter: University of Illinois


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium CG_4_10_14_0_2_um_filter_41_15


ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri 2005025

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of Washington


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indian Ocean

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Vreelandella maris

ncbi_submitter: Third Institute of Oceanography,Ministey of Natura


ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprococcus comes

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Morehead City; North Carolina

ncbi_isolation_source: seawater

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Geotoga petraea


ncbi_country: Antarctica: King George Island; Patelnia Peninsula

ncbi_isolation_source: temporal freshwater pond

ncbi_organism_name: Psychrobacter sp. ANT_WB68

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: PUS

ncbi_submitter: Makerere University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Gluconobacter sp. P5B12

ncbi_submitter: Freiburg University


ncbi_organism_name: Bifidobacterium crudilactis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Alteromonas sp. 4B03

ncbi_submitter: ETH Zurich


ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_strain_identifiers: CCSM P719

ncbi_submitter: Shanghai Institute of Technology


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: Synechococcaceae cyanobacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Cadiz


ncbi_submitter: Universidade Federal do Rio de Janeiro

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Flavobacterium sp. GCM10023249

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG12957

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: wine

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus hilgardii;x__Lentilactobacillus hilgardii DSM 20176 = ATCC 8290


ncbi_country: Spain: Vitoria

ncbi_submitter: University of Oviedo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Candidatus Fervidibacter sp.

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;x__unclassified Candidatus Fervidibacter;s__Candidatus Fervidibacter sp.


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Tang lab


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rochester; Minnesota

ncbi_isolation_source: Associated Infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Mayo Clinic


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: Vibrio cholerae O1 str. KW3

ncbi_submitter: Harvard Medical School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. KW3


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Bifidobacterium thermacidophilum


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Ruminococcus albus AD2013


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Japan

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Microcoleus sp. SVA1_A1

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Meleagridis


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: Spain

ncbi_isolation_source: Hospital Univeristario de Bellvitge (Barcelona)

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centro Nacional de Análisis Genómico


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: United Kingdom

ncbi_isolation_source: Loam soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Bath


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Canada: Quebec

ncbi_isolation_source: sick fish

ncbi_organism_name: Aeromonas salmonicida subsp. salmonicida

ncbi_submitter: Universite Laval


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_isolation_source: lymph node

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_isolation_source: seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Deep-Sea Bioresource Research Group , Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_country: China: Sichuan

ncbi_isolation_source: fecal sample

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: SOUTHWEST MEDICAL UNIVERSITY


ncbi_isolation_source: sputum

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Aminobacter sp. AP02

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- A-2_bin-299

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Francisellaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: University of Western Australia


ncbi_submitter: National Medicines Institute


ncbi_assembly_name: Rumen uncultured genome RUG14454

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas fulva


ncbi_country: USA:Las Vegas

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: Food - Raw Cow s Milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_assembly_level: Chromosome

ncbi_isolation_source: rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: USA: MD

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Soochow University


ncbi_country: China: Jiangsu

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with inulin

ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Marvinbryantia sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Sanmen

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Institutes of Biology and Medical Sciences


ncbi_country: Portugal: Oporto

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: REQUIMTE-UCIBIO. Faculdade de Farmacia da Universidade do Porto.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Hospital Universitario Central de Asturias (Oviedo)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: SAHMRI


ncbi_organism_name: Caballeronia grimmiae

ncbi_submitter: University of Illinois at Chicago


ncbi_country: Montenegro

ncbi_isolation_source: Montengrin brine cheese

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Donja Gorica


ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcaceae cyanobacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: OR

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_isolate: isolate

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Gribaldobacteria;s__bacterium (Candidatus Gribaldobacteria) CG07_land_8_20_14_0_80_33_18


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R952;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Dialister invisus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Oceanospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Boston

ncbi_isolation_source: peritoneal cavity

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Montana State University


ncbi_isolate: AOP8_A1_surf _bin _1

ncbi_strain_identifiers: AOP8_A1_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: bacterium


ncbi_organism_name: Hyphomicrobium sp. 2TAF46

ncbi_submitter: CCRP


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bradyrhizobium sp. gl3

ncbi_submitter: udelar


ncbi_organism_name: Streptomyces spiralis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_submitter: LAPOA-Federal University of Paraiba (UFPB)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Propylenella sp.


ncbi_organism_name: Labilibaculum euxinus

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acetivibrionales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Oribacterium sp. P9

ncbi_submitter: Institute of Process Engineering, Chinese Academy of Sciences


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Peribacillus simplex

ncbi_submitter: BGI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriales bacterium UBA7362

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Innoviva Specialty Therapeutics


ncbi_country: Canada: Alberta

ncbi_isolation_source: Beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: unknown

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: UNIVERSITY OF JENA


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Qingdao Agriculture University


ncbi_organism_name: Candidatus Phytoplasma fabacearum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma fabacearum


ncbi_isolation_source: hide

ncbi_submitter: Kansas State University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Sweden

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: China: Yunnan;Napahai Plateau Wetland

ncbi_isolation_source: Napahai Plateau Wetland

ncbi_organism_name: Pseudomonas sivasensis

ncbi_submitter: kunming university of science and technology


ncbi_country: China: Shandong

ncbi_isolation_source: activated sludge

ncbi_organism_name: Rhodoligotrophos defluvii

ncbi_submitter: University of Jinan


ncbi_country: Brazil

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Masimong mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Candidatus Caldatribacterium sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;c__Atribacteria;o__Atribacterales;f__Candidatus Caldatribacteriaceae;g__Candidatus Caldatribacterium;x__unclassified Candidatus Caldatribacterium;s__Candidatus Caldatribacterium sp.


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_type_species_of_genus: t

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enteroscipio rubneri

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Australia: Tasmania

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Tasmania


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Colombia: Duitama

ncbi_isolation_source: non-complicated Urinary tract infection

ncbi_submitter: Clinical Epidemiology from Colombia Research Group (GRECO-UPTC)


ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: desert soil

ncbi_organism_name: Longitalea arenae

ncbi_strain_identifiers: SYSU D01084

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Urbana


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: California; The Cedars highly alkaline spring

ncbi_isolation_source: serpentinized groundwater

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: terrestrial

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Acidovorax defluvii

ncbi_submitter: department of plant and microbial biology


ncbi_country: South Korea

ncbi_isolation_source: Pig carcasses

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: cold seep

ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Candidatus Competibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;x__unclassified Candidatus Competibacter;s__Candidatus Competibacter sp.


ncbi_assembly_name: IMG-taxon 2593339258 annotated assembly

ncbi_organism_name: Lachnospiraceae bacterium NE2001

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: South Africa

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Priestia megaterium

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Urumqi;Xinjiang

ncbi_isolation_source: Frozen surimi product from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_country: Turkey

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Microcoleus sp. F10-C6

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: Procapra picticaudata

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: China CDC


ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Colombia

ncbi_isolation_source: Joint aspirate

ncbi_organism_name: Staphylococcus aureus DAR5798

ncbi_submitter: Broad Institute


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_country: USA: Virginia

ncbi_isolation_source: vaginal

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Consortium


ncbi_organism_name: Micrococcus sp. UYEF12

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Zhejiang

ncbi_isolation_source: pickled radish

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Japan

ncbi_isolation_source: surface

ncbi_organism_name: Enterobacter sp. 200527-13

ncbi_submitter: Kyoto University


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_assembly_name: IMG-taxon 2622736515 annotated assembly

ncbi_organism_name: Aquimonas voraii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy: Bresso; MI

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Salmonella sp. SAL04286

ncbi_submitter: Zhejiang university


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Finegoldia magna


ncbi_organism_name: Acinetobacter parvus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Reyranella sp.


ncbi_organism_name: uncultured Alcanivorax sp.


ncbi_organism_name: uncultured Sediminibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: WA

ncbi_isolation_source: humeral membrane from a patient with failed shoulder athroplasty

ncbi_organism_name: Cutibacterium acnes P10

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with normal maize

ncbi_organism_name: Segatella copri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Caldilineaceae bacterium SB0666_bin_21

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Lacunisphaera sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Asheville; NC

ncbi_isolation_source: soil from elm tree

ncbi_organism_name: Nannocystis radixulma

ncbi_strain_identifiers: NCELM

ncbi_submitter: University of Mississippi


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Shuttleworthella satelles DSM 14600

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: hospital wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-4-1

ncbi_submitter: Curtin University


ncbi_organism_name: Enorma massiliensis

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: infant stool sample

ncbi_organism_name: Bifidobacterium bifidum PRL2010

ncbi_submitter: Laboratory of Probiogenomics, Department of genetics, university of Parma, Italy


ncbi_assembly_name: freshwater MAG --- E2_bin-611

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: stool

ncbi_submitter: University of Sao Paulo


ncbi_country: Belarus: Mogilev

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Northumbria University


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EBI


ncbi_country: Australia: Boho South; VIC

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Germany

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: Caecum


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Streptomyces sp. NPDC093544

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: screen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Thailand: Phitsanulok

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Public Health


ncbi_organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Second Affliated Hospital of Kunming Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Panama: Bastimentos

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: University of California, Davis


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Bartonella sp. AC10YNML

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Norway: Viken

ncbi_isolation_source: Silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Psychromonas sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_assembly_name: SOAPdenovo v1.06

ncbi_isolation_source: blood from deceased American male teenager patient

ncbi_organism_name: Neisseria meningitidis Nm11003

ncbi_submitter: BGI


ncbi_country: USA:New York; CentralBronx

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Polaribacter sp.


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: cold seep

ncbi_organism_name: Natronohydrobacter sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halanaerobiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Canada

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_organism_name: Microscillaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Ningbo city

ncbi_isolation_source: Pit mud

ncbi_organism_name: Pontibacter liquoris

ncbi_submitter: Ningbo University


ncbi_country: South Korea

ncbi_isolation_source: rice straw

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: Dankook University


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_country: Thailand: north east region

ncbi_isolation_source: salted fermented fish

ncbi_organism_name: Virgibacillus halodenitrificans

ncbi_submitter: Chulalongkorn university


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolate: AOP21_A1_surf _bin _11

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: AOP21_A1_surf _bin _11

ncbi_submitter: Genoscope


ncbi_organism_name: Prevotellamassilia timonensis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Princeton University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Vicinamibacterales bacterium


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- Umea3_bin-2957

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Trichormus sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_submitter: Peking University People's Hospital


ncbi_country: USA: Stanford University

ncbi_isolation_source: household tap filter

ncbi_organism_name: Proteobacteria bacterium ST_bin14

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium ST_bin14


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_isolation_source: chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: PAC-Campy


ncbi_country: Germany: Marsberg coppermine Kilianstollen

ncbi_isolation_source: biofilm near Copperflume 1

ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Georg-August University Goettingen

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_organism_name: Corynebacterium oculi

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: arm of patient

ncbi_organism_name: Actinomadura latina

ncbi_strain_identifiers: ATCC BAA-277

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: USA:New York

ncbi_organism_name: Escherichia coli O55:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: Russia: Karabetova Gora near the city of Taman

ncbi_isolation_source: sediment and water from a salsa lake of a terrestrial mud volcano

ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA

ncbi_submitter: Cepheid


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Smyrna; DE

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Delaware

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: LA

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: USA: California

ncbi_isolation_source: California sea lion

ncbi_organism_name: Campylobacter insulaenigrae

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Berta


ncbi_country: Italy: Friuli Venezia Giulia

ncbi_isolation_source: roots of healthy hydroponic lamb s lettuce plants

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: University of Udine


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: human

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: United Kingdom: Bristol

ncbi_isolation_source: Laboratory reference strain

ncbi_submitter: University of Bath


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: IMG-taxon 2675903151 annotated assembly

ncbi_organism_name: Allopseudospirillum japonicum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Switzerland: Basel city

ncbi_isolation_source: autopsy

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_country: USA: Michigan

ncbi_isolation_source: Residence shower

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China: Beijing

ncbi_submitter: Peking University Third Hospital


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Algeria: Ouargla

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprobacillus cateniformis


ncbi_organism_name: Sphingomonadaceae bacterium


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Microbacterium sp. 179-I 1D1 NHS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;g__Microbacterium;x__unclassified Microbacterium;s__Microbacterium sp. 179-I 1D1 NHS


ncbi_organism_name: Amycolatopsis japonica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sorangium sp. So ce118

ncbi_strain_identifiers: So ce118

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce118


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA12

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Instituto de Quimica


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWE2_40_8


ncbi_country: Tunisia

ncbi_isolation_source: seafood

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: Costa Rica: La Selva Biological Station

ncbi_isolation_source: Atta cephalotes fungus garden

ncbi_organism_name: Paraburkholderia sp. Ac-20347

ncbi_submitter: UW-Madison


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: WGS using MinION R10.4.1 of Staphylococcus aureus TUM20820

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Mycobacterium tuberculosis GM 1503

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis GM 1503


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Leyella stercorea

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Aquaticitalea lipolytica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: EPFL