ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Falcatimonas sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_assembly_level: Scaffold

ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp. D55t1_190419_H1

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Vibrio sp. YT-17


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_1 WWTPs effluent

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium cochlearium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Portland State University


ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Acholeplasma sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Japan

ncbi_submitter: Toho university


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: Pacific Ocean: Lau Basin

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Qingdao Agriculture University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Buchananiibacteriota;s__Candidatus Buchananbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_42_9


ncbi_isolation_source: blood sample from patient with bacteremia

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CIG1267


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_organism_name: Geobacillus thermodenitrificans

ncbi_submitter: Microbial diversity studies of the Sao Paulo Zoo


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: human gut

ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Russia: Udmurtia

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences


ncbi_assembly_name: S.aureus 3989

ncbi_country: India

ncbi_isolation_source: sputa and first aspirate after intubation of a 75 year-old female with pleural effusion; pneumonitis; and post radiation therapy

ncbi_submitter: National Center for Biological Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 3989


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Bristol


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: San Diego State University


ncbi_country: Australia: Brisbane

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Stenotrophomonas bentonitica


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: infant feces

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Maribacter stanieri

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_country: China: Beijing

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Autonoma de Sinaloa


ncbi_country: Brazil: Campinas

ncbi_isolation_source: urine

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_assembly_level: Chromosome

ncbi_country: Mexico: Mexico City

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_submitter: University of Michigan


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangxi

ncbi_isolation_source: mangrove plant

ncbi_organism_name: Streptomyces sp. 2BBP-J2

ncbi_submitter: Chinese Academy of Medical Science & Peking Union Medical College


gtdb_type_species_of_genus: t

ncbi_country: Switzerland

ncbi_isolation_source: fruit powder

ncbi_organism_name: Franconibacter helveticus LMG 23732

ncbi_submitter: Nottingham Trent University, UK

ncbi_type_material_designation: assembly from type material


ncbi_country: Japan: Tochigi; Nishinasuno

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Universidad de Costa Rica (UCR) and Centro Nacional de Innovaciones Biotecnológicas (CENIBiot)


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient3 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Holdemanella biformis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR92 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Cellvibrionales;f__Porticoccaceae;x__unclassified Porticoccaceae;x__SAR92 clade;x__environmental samples;s__uncultured SAR92 cluster bacterium


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_isolation_source: stool

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Nitrospirillum amazonense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Hoylesella loescheii

ncbi_submitter: EMG


ncbi_country: China: Nangjing

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Thailand

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S069

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S069


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_organism_name: Flavobacteriaceae bacterium UBA2765

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Center for Disease Prevention and Control of PLA


ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Quebec

ncbi_isolation_source: swab

ncbi_submitter: Government of Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia ruysiae

ncbi_submitter: AgResearch Limited


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: cheese

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Agroscope


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Black Sea sulfidic water cellulose enrichment

ncbi_organism_name: bacterium

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Mycoplasmopsis bovis


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Wilmar International Limited


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudoruminococcus massiliensis


ncbi_organism_name: uncultured Roseateles sp.

ncbi_submitter: EMG


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Candidatus Pelethomonas sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Pelethomonas;x__unclassified Candidatus Pelethomonas;s__Candidatus Pelethomonas sp.


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_genome_category: derived from single cell

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin9

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MSU bin9

ncbi_submitter: Monash University


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Wroclaw University of Environmental and Life Sciences


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sutterella sp. AF15-44LB

ncbi_submitter: BGI


ncbi_country: Australia: Newcastle

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: University of Queensland


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of Zurich


ncbi_country: Algeria: M sila

ncbi_isolation_source: Nose

ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Rudaea sp.

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-290

ncbi_submitter: Broad Institute


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D9_bin-1035

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Philippines: Luzon Island

ncbi_organism_name: Actinomadura luzonensis

ncbi_refseq_category: reference genome


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridiales bacterium


ncbi_country: Chile: Rengo

ncbi_isolation_source: Macerated buds

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: INIA Rayentue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Brevundimonas aurantiaca

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA3191

ncbi_submitter: University of Queensland


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Veillonella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: USA

ncbi_isolation_source: joint

ncbi_organism_name: Staphylococcus epidermidis NIH051475

ncbi_submitter: NIH-NISC


ncbi_organism_name: Litorivivens sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_name: IMG-taxon 2634166901 annotated assembly

ncbi_organism_name: Pisciglobus halotolerans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Brazil: Belo Horizonte;Pampulha lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M43BS1

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_isolation_source: gut content

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Acinetobacter baumannii 25691_6

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Institut Pasteur


ncbi_assembly_name: EntClo 1.0

ncbi_country: India

ncbi_isolation_source: rice rhizosphere

ncbi_organism_name: Enterobacter cloacae subsp. cloacae GS1

ncbi_submitter: Madurai Kamaraj University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae;x__Enterobacter cloacae subsp. cloacae GS1


ncbi_organism_name: Staphylococcus schweitzeri

ncbi_submitter: SC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: beef

ncbi_strain_identifiers: STEC 539

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: Colon

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: JCVI


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Henan Agricultural University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Brachybacterium paraconglomeratum

ncbi_submitter: Tang lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: USA: GA

ncbi_isolation_source: forest

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG10676

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA:Las Vegas

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: IA

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: ShanXi

ncbi_isolation_source: sediment of salt lake

ncbi_organism_name: Billgrantia lactosivorans

ncbi_submitter: Xinxiang Medical University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Phocaeicola sp.


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Rhodothermaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: EPFL


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_isolation_source: Strip loin

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Banaras Hindu University


ncbi_country: Spain: Asturias

ncbi_organism_name: Acidipropionibacterium jensenii

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: uncultured Pedobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Vagococcus sp. AM17-17

ncbi_submitter: BGI


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cb021

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: Rumen uncultured genome RUG10019

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_submitter: Toho University


ncbi_country: Serbia: Bogatic-Sabac

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Vienna


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Polaribacter sp. Hel_I_88

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Lab of Microbial Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou university


ncbi_country: China: Guangdong; Guangzhou

ncbi_isolation_source: vegetable

ncbi_submitter: South China Agriculture University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2617270780 annotated assembly

ncbi_organism_name: Micrococcus terreus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Stenotrophomonas sp. EMP41

ncbi_submitter: Universidad Autonoma Metropolitana Xochimilco


ncbi_isolate: SPRUCE 306

ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_strain_identifiers: SPRUCE 306

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;x__unclassified Candidatus Dormibacteria;s__Candidatus Dormibacteria bacterium


ncbi_organism_name: Streptococcus sp. A23

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: uncultured Iamiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Chryseolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolate: AOP28_A2_surf _bin _26

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP28_A2_surf _bin _26

ncbi_submitter: Genoscope


ncbi_organism_name: Actinokineospora soli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_assembly_name: Rumen uncultured genome RUG14161

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Wayne State University


ncbi_country: Poland

ncbi_organism_name: Providencia sp. wls1949

ncbi_submitter: NanKai universit


ncbi_country: Jersey

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: China: Huanggang

ncbi_isolation_source: rice planting area

ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: shandong agricultural university


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Virginia

ncbi_isolation_source: nasopharyngeal swab

ncbi_submitter: James Madison University


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_country: Israel: kibutz Hulda

ncbi_organism_name: Candidatus Coxiella mudrowiae

ncbi_strain_identifiers: CRt

ncbi_submitter: Uppsala University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Oxalobacter formigenes OXCC13

ncbi_submitter: Broad Institute


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Marinomonas sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Gordonibacter sp.


ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Thailand: Nonthaburi

ncbi_isolation_source: urine

ncbi_submitter: Faculty of Public Health


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Italy: Genoa

ncbi_isolation_source: marine sediment

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: uncultured Erythrobacter sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B159;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: Bifbre

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Parma


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_isolation_source: chicken carcass

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_isolation_source: Proximal colon


ncbi_assembly_name: Rumen uncultured genome RUG10011

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: China: Zhaoqing

ncbi_isolation_source: sushi

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Center for Disease Control and Prevention of zhaoqing


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Candidatus Brocadiia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;x__unclassified Candidatus Brocadiia;s__Candidatus Brocadiia bacterium


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Tucson; AZ

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_organism_name: Halopseudomonas bauzanensis

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: catheter urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Toho university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gelidibacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany: Goettingen

ncbi_isolation_source: tomato rhizosphere

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Genskey Research Institute


ncbi_organism_name: Sphingomonas sp. NPDC019816

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: China

ncbi_isolation_source: bile

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Candidatus Sericytochromatia bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__unclassified Candidatus Sericytochromatia;s__Candidatus Sericytochromatia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EBI


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Porticoccaceae bacterium UBA4010


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Universidad Autonoma de Yucatan


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_country: Italy: Milan

ncbi_isolation_source: Prosthetic implant hip

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: IRCCS Ospedale Galeazzi - Sant'Ambrogio


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_isolate: Pseudomonas sp. Irchel s3a12

ncbi_organism_name: Pseudomonas sp. Irchel s3a12

ncbi_strain_identifiers: Pseudomonas sp. Irchel s3a12

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_country: USA: DE

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Heritagella intestinalis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Heritagella;s__Candidatus Heritagella intestinalis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Heritagella;s__Candidatus Heritagella intestinalis


ncbi_organism_name: Lentibacillus cibarius

ncbi_submitter: World Institute of Kimchi


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef fabrication equipment surface

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-05395

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_isolation_source: sub-seafloor sulfide deposits

ncbi_organism_name: bacterium BMS3Bbin08

ncbi_submitter: JAMSTEC


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin18

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MOJ bin18

ncbi_submitter: Monash University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Alcaligenaceae bacterium Me47

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Dactylosporangium sp. CA-139066

ncbi_submitter: Technical University of Denmark


ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: PSGVP Mandals SI Patil Arts GB Patel Science and STKVS Commerce College


ncbi_organism_name: uncultured Nitrosomonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Aliinostoc sp. HNIBRCY26

ncbi_submitter: Honam National Institute of Biological Resources


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Ferrovibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Medical City


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: freshwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Brisbane

ncbi_isolation_source: bioreactor

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Queensland university of technology


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: First Affiliated Hospital of Ningbo University


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LHUB-ULB


ncbi_organism_name: Petrotoga sp. 9PWA.NaAc.5.4

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Desulfuromusa sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Vogesella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Qinghai Province

ncbi_isolation_source: feces

ncbi_organism_name: Cellulomonas fengjieae

ncbi_submitter: China CDC


ncbi_country: India: Nagpur

ncbi_isolation_source: sludge from phenol fed wastewater aerobic bioreactor

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: CSIR-National Environmental Engineering Research Institute


ncbi_country: Canada: Rivire St-Jean; Gasp; Quebec

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site C

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Phenylobacterium sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Muribaculum intestinale


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_submitter: Loyola University Chicago


ncbi_isolate: Trichococcus palustris

ncbi_organism_name: Trichococcus palustris

ncbi_strain_identifiers: Trichococcus palustris

ncbi_submitter: WAGENINGEN UNIVERSITY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China

ncbi_isolation_source: coal mining

ncbi_organism_name: Hydrogenophaga sp. H7

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Pacific Ocean: Lau Basin

ncbi_organism_name: Desulfobulbaceae bacterium


ncbi_country: India: Sundarbans

ncbi_isolation_source: intertidal sediment

ncbi_organism_name: Myceligenerans indicum

ncbi_submitter: Indian Institute of Science Education and Research Kolkata


ncbi_assembly_name: IMG-taxon 2585428079 annotated assembly

ncbi_organism_name: Clostridium acidisoli DSM 12555

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: estuary sediment

ncbi_organism_name: Algoriphagus aestuariicola

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: pickle

ncbi_organism_name: Companilactobacillus keshanensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: USA: Stillwater; OK

ncbi_isolation_source: indoor water fountain

ncbi_organism_name: Chryseobacterium sp. Hurlbut01

ncbi_submitter: Oklahoma State Universtiy


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Acetomicrobium hydrogeniformans

ncbi_submitter: University of Bremen


ncbi_country: China: Sansha

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudohongiella sp. SYSU M77423

ncbi_strain_identifiers: SYSU M77423

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: oysters; cultured off Spanish Mediterranean coast

ncbi_organism_name: Roseibium alexandrii

ncbi_strain_identifiers: CECT 5112

ncbi_submitter: UVEG


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: OK

ncbi_isolation_source: Market Swine

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59611F

ncbi_submitter: FDA


ncbi_submitter: Institute for Medical Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: WAGENINGEN UR


ncbi_country: Ghana: Nyankpala site 1

ncbi_isolation_source: Kantong

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_country: Norway: Baerum

ncbi_isolation_source: Wastewater pump station

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_37_33


ncbi_organism_name: Sedimenticolaceae bacterium


ncbi_organism_name: Rubricoccaceae bacterium

ncbi_submitter: McGill University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Lactiplantibacillus nangangensis

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Bullifex sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: national health research institutes


ncbi_organism_name: Salmonella sp. SKLX088796

ncbi_submitter: Zhejiang university


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: NIGAB

ncbi_submitter: PARC-National Agricultural Research Center


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__environmental samples;s__uncultured Candidatus Neoarthromitus sp.


ncbi_country: Pacific Ocean: near Hawaii

ncbi_isolation_source: sea water

ncbi_organism_name: Sulfitobacter sp. HI0027

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_organism_name: Mycolicibacterium chitae

ncbi_submitter: Uppsala University


ncbi_organism_name: Litoreibacter albidus

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- AM5_bin-1357

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC053808

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: bacterium


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Prevotella nigrescens


ncbi_organism_name: uncultured Macromonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4543

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: Monash University


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Hungary: Kecskemt

ncbi_isolation_source: Anaerobic sludge from Kecskemt Biogas Plant

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Streptomyces sp. NPDC008086

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_country: Australia: Brisbane

ncbi_submitter: The University of Queensland


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SCOPE


ncbi_country: USA: Yellowstone National Park; GGS063 Spring

ncbi_isolate: Bin S17

ncbi_isolation_source: Sediments from shelf

ncbi_organism_name: Armatimonadota bacterium

ncbi_strain_identifiers: Bin S17

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: Guinea pig

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: India: Pune

ncbi_organism_name: Escherichia coli NA114

ncbi_submitter: Pathogen Biology Laboratory, Department of Biotechnology, University of Hyderabad


ncbi_country: Belgium

ncbi_isolation_source: freshwater pond

ncbi_organism_name: Deinococcus sp. 6YEL10

ncbi_submitter: KU Leuven


ncbi_country: Russia: Kaluga Region

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_organism_name: Atopobiaceae bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Streptomyces sp. Ag109_O5-1


ncbi_country: Australia: Victoria

ncbi_isolation_source: Layer chicken liver; farm

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii UH16108

ncbi_submitter: J. Craig Venter Institute


ncbi_assembly_name: Sphingobium sp Z007 rep C with predator

ncbi_organism_name: Sphingobium sp. Z007

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: France

ncbi_isolation_source: Cheese rind

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_submitter: Dutton Lab, UCSD


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Campylobacter sp. CCS1377

ncbi_submitter: University Medical Center Goettingen


ncbi_country: Bangladesh: Mymensingh

ncbi_isolation_source: Raw milk

ncbi_submitter: Zoonosis Science Center


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: Rumen uncultured genome RUG12701

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Albidovulum sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Morganella morganii

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Klebsiella sp. JB_Kp040

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_country: United Kingdom: Aberystwyth

ncbi_isolation_source: throat

ncbi_organism_name: Fusobacterium necrophorum

ncbi_submitter: Cardiff Metropolitan University


ncbi_country: Mongolia

ncbi_isolation_source: not applicable

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Joint Faculty of Veterinary Medicine, Yamaguchi University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: EMG


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Zoogloeaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: China Agricultural University


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: respiratory tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Brisbane

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: University of Queensland


ncbi_country: Myanmar: Yangon

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Otago


ncbi_country: China: Linyi

ncbi_isolation_source: root endophyte

ncbi_organism_name: Burkholderia sp. GbtcB21

ncbi_submitter: Central South University


ncbi_country: USA:Whitewater; Wisconsin

ncbi_isolation_source: fecal material

ncbi_organism_name: Clostridium chrysemydis

ncbi_strain_identifiers: PT

ncbi_submitter: Gateway Technical College


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Yunnan

ncbi_isolation_source: Yunnan; China

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Mesorhizobium sp. M0058

ncbi_submitter: Washington State University


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 38 (4-2774682)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 38 (4-2774682)


ncbi_organism_name: Streptomyces murinus

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: DHS Bioreactor

ncbi_organism_name: Hyphobacterium sp.

ncbi_submitter: Water Quality Control Lab, Division of Environmental Engineering, Faculty of Engineering, Hokkaido University


ncbi_country: Ireland

ncbi_isolation_source: broiler caeca 8

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: Lactococcus garvieae ATCC 49156


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Peru


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA: New York City

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: LA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_submitter: Shanghai Hongkou District Center for Disease Control and Prevention


ncbi_country: India: Arabian Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Marinobacter sp. AN1

ncbi_submitter: Bose Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EBI


ncbi_organism_name: Candidatus Butyricimonas faecavium

ncbi_submitter: Quadram Institutte


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium CG_4_8_14_3_um_filter_36_10


ncbi_submitter: Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar II 1,4,12,27:e,n,x:e,n,x


ncbi_country: Malaysia: Selangor

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Monash University


ncbi_country: Brazil: Teixeiras de Freitas; Bahia State

ncbi_organism_name: Xanthomonas citri pv. eucalyptorum

ncbi_strain_identifiers: LPF 602

ncbi_submitter: Universidade Federal de Vicosa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. eucalyptorum

ncbi_type_material_designation: assembly from pathotype material


ncbi_organism_name: Candidatus Tumulicola sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFCSPHIGHO2_12_FULL_47_11


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA7762

ncbi_submitter: University of Queensland


ncbi_country: Georgia

ncbi_isolation_source: Matsoni fermented milk product

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Ljubljana


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M70017

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_organism_name: Helicobacter pylori CPY6081

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Roseibium sp.

ncbi_submitter: University of Southern California


ncbi_assembly_name: freshwater MAG --- LJ-3-4m_bin-0559

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_assembly_name: IMG-taxon 2671180040 annotated assembly

ncbi_organism_name: Pseudoduganella namucuonensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Toronto

ncbi_isolation_source: Food

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 1/2a;x__Listeria monocytogenes serotype 1/2a str. 10-5024


ncbi_country: Australia

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Monash University


ncbi_country: Egypt

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College London (UCL)


ncbi_country: China: Shaanxi

ncbi_isolation_source: chicken cloacal swab

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pantoea vagans

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-3 day 1472

ncbi_organism_name: Kosmotogales bacterium

ncbi_submitter: The Ohio State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: separation from traditional fermented cream

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: Stellenbosch University


ncbi_organism_name: Citrobacter youngae

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Ornithinimicrobium sp. W1679

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China

ncbi_isolation_source: volcanic soil

ncbi_organism_name: Bacillus mesophilus

ncbi_submitter: China Center of Industrial Culture Collection


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Australia: Punkally Creek

ncbi_isolation_source: sediments

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Spain: Mar Menor (Region de Murcia)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad de Alicante


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Flavobacteriaceae bacterium UBA6231

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. Y318-3

ncbi_submitter: Soochow University


ncbi_organism_name: Butyribacter intestini

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Mount Sinai Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Edaphobacter sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: Colorado State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: Patient

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: ROSLIN


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: USA: IA

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: PS1 clade bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;x__PS1 clade;s__PS1 clade bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Planctomycetota bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Australia

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_organism_name: Candidatus Caldatribacteriota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;p__Candidatus Caldatribacteriota;x__unclassified Candidatus Caldatribacteriota;s__Candidatus Caldatribacteriota bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: IBD Stool

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Marseille

ncbi_isolation_source: drain liquid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0298942.10

ncbi_submitter: IGS


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pseudomonas syringae pv. aptata

ncbi_submitter: Faculty of Biology, University of Belgrade

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aptata


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis


ncbi_country: USA: Lubbock; TX

ncbi_isolation_source: indwelling urinary catheter

ncbi_submitter: JCVI


ncbi_organism_name: Brucella ovis


ncbi_organism_name: Bacillus spongiae

ncbi_submitter: Hannam University


ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Marivita cryptomonadis

ncbi_submitter: Shantou University


ncbi_organism_name: Kitasatospora sp. NPDC059463

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas sp. 4810-S13

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfurobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: USA: MN

ncbi_isolation_source: Ground turkey

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_organism_name: Alkalihalobacillus sp. MEB130

ncbi_submitter: National Centre For Cell Science (NCCS)


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Arthrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Vibrio cholerae CP1116

ncbi_submitter: CosmosID


ncbi_isolation_source: roots

ncbi_organism_name: Aureimonas psammosilenae

ncbi_strain_identifiers: YIM DR1026

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Victivallales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Washington; Hanford 300 Area; IFRC

ncbi_isolation_source: Hanford 300 Area IFRC 399-1-60 Groundwater

ncbi_organism_name: Parcubacteria bacterium C7867-005

ncbi_submitter: Pacific Northwest National Laboratroy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Parcubacteria;s__Parcubacteria bacterium C7867-005


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: India: Vellore

ncbi_isolation_source: pus

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Tunisia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: SurvCARE


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: unknown

ncbi_organism_name: Acutalibacter muris


ncbi_country: China: Hohhot

ncbi_isolation_source: breast milk

ncbi_organism_name: Streptococcus humanilactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Baltimore

ncbi_isolation_source: Mid-vagina

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: University of Maryland Baltimore


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Melieria omissa


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Acinetobacter sp. MYb191

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_assembly_name: Rumen uncultured genome hRUG894

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T40867

ncbi_submitter: Broad Institute


ncbi_organism_name: Agrobacterium fabacearum TT111

ncbi_submitter: Genoscope CEA


ncbi_assembly_name: freshwater MAG --- UppL5_bin-1023

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Streptomyces sp. NPDC058257

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Thermodesulfovibrio yellowstonii

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Salmonella sp. 2021_436

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_isolate: AOP34_AQ2_surf _bin _18

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP34_AQ2_surf _bin _18

ncbi_submitter: Genoscope


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: University of Alberta