ncbi_country: USA: Texas (State)

ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Pennsylvania

ncbi_genome_representation: full

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Factory

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_assembly_level: Scaffold

ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus SJOS6145

ncbi_submitter: Broad Institute


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_isolation_source: pork salami

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Technical University of Munich


ncbi_genome_category: derived from metagenome

ncbi_isolate: AOP19_E1_surf _bin _23

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: AOP19_E1_surf _bin _23

ncbi_submitter: Genoscope


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV047

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Iraq: Baghdad

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: College of Medicine/Al-Nahrain University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_assembly_level: Complete Genome

ncbi_country: Taiwan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: national health research institutes


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Romboutsia timonensis

ncbi_submitter: EMG


gtdb_representative: t

ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Methylophilus sp.

ncbi_submitter: University of Montreal


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: South Korea: Sungnam

ncbi_isolation_source: ginseng with high-pressure treatment

ncbi_organism_name: Bacillus sp. M 2-6

ncbi_submitter: Chunlab, Inc.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. M 2-6


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: AgResearch


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: Austria

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: uncultured Oceanospirillaceae bacterium


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Hunan

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: France

ncbi_isolation_source: fermented vegetebles

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CIRM-BIA 1110

ncbi_submitter: Brigham Young University


ncbi_country: USA

ncbi_isolation_source: urine sample

ncbi_organism_name: Klebsiella pneumoniae ATCC BAA-2146

ncbi_strain_identifiers: ATCC BAA-2146

ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae ATCC BAA-2146


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_country: China: Beijing

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: EPFL


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Nocardiopsis alba

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter pragensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Aestuariivirga sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Enterococcus alcedinis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Sahlgrenska University Hospital


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Thermoflexus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Butyricicoccaceae bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Saprospiraceae bacterium


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Third Institute of Oceanography


ncbi_isolation_source: Richmond Mine C75 location

ncbi_organism_name: Leptospirillum ferriphilum

ncbi_submitter: University of Queensland


ncbi_organism_name: Neobacillus drentensis

ncbi_submitter: Auburn University


ncbi_organism_name: Nocardia sp. NPDC050697


ncbi_isolation_source: bovine lymph node

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_country: Poland

ncbi_isolation_source: pellet

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Nanyang Technological University


ncbi_country: Japan

ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Toho University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: NATIONAL UNIVERSITY OF IRELAND, GALWAY


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: marine sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Tehran


ncbi_country: Saudi Arabia

ncbi_isolation_source: Poultry

ncbi_submitter: Saudi Food and Drug Authority

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bradyrhizobium arachidis

ncbi_strain_identifiers: USDA 3384

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Brazil: Amazon

ncbi_isolation_source: Aquatic macrophyte from water in front of the city

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: FEDERAL UNIVERSITY OF AMAZON


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudomonas brassicae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)


ncbi_country: Thailand

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: addis ababa university


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-474-04_S3_C3

ncbi_submitter: IGS


ncbi_assembly_name: freshwater MAG --- KR_bin-1212

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: USA: Minnesota

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: California; La Jolla

ncbi_isolation_source: Kelp surface

ncbi_organism_name: Nereida sp. MMG025

ncbi_submitter: San Diego State University


ncbi_organism_name: Desulfogranum japonicum DSM 18378

ncbi_refseq_category: reference genome


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3641

ncbi_submitter: University of Queensland


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: food

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: nares

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Salmonella enterica subsp. enterica


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: SponGES


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang university


ncbi_organism_name: Escherichia coli HB101

ncbi_submitter: The  First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: laboratory transconjugant

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: France: Normandy; Caen

ncbi_isolation_source: Urines

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Normandy university


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: EPFL


ncbi_assembly_level: Chromosome

ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: Bacillus sp. A01H

ncbi_submitter: Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. A01H


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


gtdb_type_species_of_genus: t

ncbi_organism_name: Intestinibacillus massiliensis

ncbi_submitter: URMITE


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: IMG-taxon 2528768223 annotated assembly

ncbi_organism_name: Pasteurella testudinis DSM 23072

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0436R

ncbi_submitter: Broad Institute


ncbi_country: USA: FL; CRF

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Mycolicibacterium sp. OfavD-34-C

ncbi_submitter: Meyer Microbes Lab


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Germany

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: JMI Laboratories


ncbi_country: USA: Florida Keys; Florida

ncbi_isolation_source: degrading mangrove leaf

ncbi_organism_name: Pseudoalteromonas sp. MB41

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__unclassified Cyanobacteriota/Melainabacteria group;s__Cyanobacteriota/Melainabacteria group bacterium


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Endomicrobiia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_genome_category: derived from single cell

ncbi_organism_name: Hellea sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Japan

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: National Agri-Food Biotechnology Institute


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Thomasclavelia sp.


ncbi_organism_name: Klebsiella sp. C390

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Dialister sp.

ncbi_submitter: UIUC


ncbi_organism_name: Kitasatospora herbaricolor

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kaust


ncbi_organism_name: Streptococcus equinus

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bicetre hospital


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by MDA; deep marine sediment

ncbi_organism_name: Fidelibacterota bacterium MT.SAG.2

ncbi_submitter: Scripps Institution of Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium MT.SAG.2


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: Secondary rapid sand filter

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Chile: Los Lagos; Cahuelmo Hot Spring

ncbi_isolation_source: non-acidic hot spring microbial mat

ncbi_organism_name: Elainella sp. C42_A2020_010

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_country: Italy

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: CDI investments


ncbi_country: USA: California

ncbi_isolation_source: activated sludge from wastewater treatment plant

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: USA

ncbi_isolation_source: influent wastewater at WWTP

ncbi_organism_name: Aeromonas hydrophila

ncbi_strain_identifiers: USC WW 2022

ncbi_submitter: US Qgy


ncbi_country: Canada: Powell Lake South basin; British Columbia

ncbi_isolation_source: lake water

ncbi_organism_name: Methylococcus sp.

ncbi_submitter: Dalhousie University


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: China: Henan

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Nocardiopsis alborubida

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. SID4948

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Hang Zhou

ncbi_isolation_source: PAHs contaminated soil

ncbi_organism_name: Shinella zoogloeoides

ncbi_submitter: zhejiang university


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Georgia State University


ncbi_organism_name: Selenomonas noxia

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0822

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_country: France

ncbi_isolation_source: flower

ncbi_organism_name: Microbacterium sp. CFBP 13617

ncbi_submitter: INRAE


ncbi_isolation_source: human fecal sample

ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: University of Chicago


ncbi_isolation_source: 20 years wild ginseng rhizosphere soil

ncbi_organism_name: Variovorax sp. J31P179

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Akkermansia muciniphila


ncbi_assembly_name: Salmonella enterica CVM N45927 v1.0

ncbi_country: USA: CT

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: USA:Surgical Intensive Care Unit at Rush University Medical Center in Chicago; IL

ncbi_isolation_source: anterior nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Universidad de Sevilla


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_country: Brazil: Paranoa Lake; Brasilia

ncbi_isolation_source: lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Brasilia


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Arcanobacterium wilhelmae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Guangdong

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Cyanobacteria bacterium J06581_3

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06581_3


ncbi_submitter: General Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: Instituto de Quimica


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Limnochordales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: The Ohio State University


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_assembly_name: Rumen uncultured genome RUG11154

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: EPFL


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Capnocytophaga sp.

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2693429914 annotated assembly

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Campylobacter coli

ncbi_submitter: WAGENINGEN UR


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Rhizobium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lacticaseibacillus casei

ncbi_submitter: Wagralim


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: South Korea: Yanggu

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: POSTECH


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacillota bacterium


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile CD51

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Segetibacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Czech Republic: Ostrava

ncbi_isolation_source: leg wound

ncbi_organism_name: Acinetobacter proteolyticus

ncbi_submitter: National Institute of Public Health


ncbi_country: China

ncbi_organism_name: Acidipropionibacterium jensenii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H19476

ncbi_submitter: Broad Institute


ncbi_organism_name: Treponema berlinense


ncbi_country: France: Paris

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Serratia sp. N21D137

ncbi_submitter: Ondokuz Mayis University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. N21D137


ncbi_organism_name: Haemophilus sp. HN_Hi01

ncbi_submitter: Hunan Children's hospital


ncbi_organism_name: uncultured Methylococcales bacterium


ncbi_submitter: University of Pavia


ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: freshwater MAG --- MJ1_bin-0626

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: Dallas

ncbi_isolation_source: soil

ncbi_organism_name: Erythrobacter litoralis

ncbi_submitter: University of Maryland


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Weissella confusa

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: zhejiang University


ncbi_organism_name: Segatella hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Gloeomargarita sp. SKYG98

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sam Houston State University


ncbi_organism_name: Porticoccus hydrocarbonoclasticus

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Atlantic Ocean

ncbi_isolation_source: hydrothermal fluid

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Alberta


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_country: South Africa: Pretoria

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodopirellula sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: South Korea

ncbi_isolation_source: beef

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Paraburkholderia sp. IMGN_8

ncbi_submitter: Institute for Basic Science


ncbi_country: China: Hanzhong

ncbi_isolation_source: root nodule from lead-zinc mine

ncbi_organism_name: Achromobacter sp. HZ28

ncbi_submitter: Northwest A&F University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_isolate: YS river water

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_organism_name: Bauldia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG10149

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: bovine feces

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_organism_name: Mycolicibacterium aichiense

ncbi_submitter: SC


ncbi_country: Australia: Brisbane

ncbi_organism_name: Prevotella denticola

ncbi_submitter: University of the Sunshine Coast


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Cyanobacteria bacterium RU_5_0

ncbi_submitter: University of Wisconsin, Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium RU_5_0


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 2953

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Italy: Passo dello Zovallo; Ferriere; Piacenza

ncbi_isolation_source: trap plant nodule

ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Universidad Politecnica de Madrid


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Adlercreutzia sp.


ncbi_country: China: Wuhan

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_country: USA: CA

ncbi_isolation_source: goat siberian ibex feces

ncbi_submitter: FDA/CFSAN


ncbi_country: France: Bordeaux

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: WA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Melbourne

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: ECO 104

ncbi_submitter: Monash University


ncbi_country: Peru: Lima

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Coprococcus aceti

ncbi_submitter: UIUC


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Oviedo


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: PA

ncbi_isolation_source: feces

ncbi_submitter: USDA ARS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: Atlantic Ocean: North Atlantic

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudidiomarina atlantica

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: China: Weifang

ncbi_isolation_source: sick chicken liver

ncbi_submitter: University College London (UCL)


ncbi_isolation_source: activated sludge

ncbi_organism_name: Rhodococcus sp. LW-XY12

ncbi_submitter: Institute of Hydrobiology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. LW-XY12


ncbi_country: Australia: NSW

ncbi_isolation_source: landfill leachate from Eastern Creek

ncbi_organism_name: Dietzia aurantiaca

ncbi_submitter: UNSW


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Limisphaera sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: USA: Michigan

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: Kenya: Nairobi

ncbi_isolation_source: vaginal microbiome

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Saskatchewan


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Enhydrobacter aerosaccus SK60

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Panama: El Valle de Anton

ncbi_organism_name: Nostoc sp. TCL26-01

ncbi_submitter: Boyce Thompson Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_country: Peru


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Romania: Cluj

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_organism_name: Paenarthrobacter sp. NPDC092416

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Saccharicrinis sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA67

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Salinarimonas sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Matapan Vavilov deep canyon in the Eastern Mediterranean sea

ncbi_organism_name: Palleronia abyssalis

ncbi_strain_identifiers: CECT 8504

ncbi_submitter: UVEG


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prevotellaceae bacterium


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University Graduate School of Medicine


ncbi_organism_name: Cellulomonas gelida

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pantoea sp. Lu_F5_004

ncbi_submitter: Agriculture Victoria


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Prochlorococcaceae cyanobacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Blautia stercoris


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: USA: GA

ncbi_isolation_source: ground turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. N4630


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: EMG


ncbi_organism_name: Thomasclavelia ramosa


ncbi_organism_name: Legionella moravica

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: Linnaeus University


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Dorea sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Health Canada


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Neptuniibacter sp. UBA847


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: USA

ncbi_isolation_source: parent strain ATCC 25923 maintained for many years in lab

ncbi_organism_name: Staphylococcus aureus


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: nasopharynx

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Moraxellaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: uncultured Mediterranea sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridium sp. CAG:307_30_263

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MD

ncbi_organism_name: Bacillus cereus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae SGBS015

ncbi_submitter: MD Anderson Cancer Center


ncbi_country: Mali

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_organism_name: Tuberibacillus sp. Marseille-P3662

ncbi_submitter: URMITE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Peanut Butter

ncbi_submitter: Arizona State Public Health Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal tissue

ncbi_organism_name: Ruegeria atlantica

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: South Korea: Kyonggi

ncbi_isolation_source: Doenjang; fermented soybeans

ncbi_organism_name: Staphylococcus succinus

ncbi_submitter: Kookmin University


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Merdivicinus faecavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Merdivicinus;s__Candidatus Merdivicinus faecavium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Kunming Medical University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: USA: Nashville; Tennessee

ncbi_isolation_source: Healthy infant urine

ncbi_organism_name: Actinotignum schaalii

ncbi_submitter: Vanderbilt University Medical Center


ncbi_country: Chile

ncbi_isolation_source: Liver

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: ADL Diagnostic Chile Ltda


ncbi_country: Denmark: Odense

ncbi_isolation_source: nose swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Odense University Hospital


ncbi_country: China: Changsha

ncbi_isolation_source: sputum

ncbi_organism_name: Nocardia farcinica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: USA: Minnesota

ncbi_submitter: University of Minnesota


ncbi_country: Australia: Grafton; New South Wales

ncbi_organism_name: Bradyrhizobium sp. CB2312

ncbi_submitter: Murdoch University


ncbi_organism_name: Prevotella conceptionensis

ncbi_submitter: EMG


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya: Kisumu

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: stool

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: California

ncbi_isolation_source: conjunctival swab

ncbi_organism_name: Mycoplasma sp. CSL7475-4

ncbi_submitter: US FDA


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Ecuador: Guayaquil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_isolation_source: Breast milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_submitter: Nanjing University of Chinese Medicine


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Megasphaera sp. UBA6424

ncbi_submitter: University of Queensland


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_country: USA: San Francisco; CA

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Germany: Hamburg

ncbi_isolation_source: rectal swab

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_organism_name: Niabella sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Wilmar International Limited


ncbi_submitter: Saint-Louis Hospital


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Gallionella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sp. F0442


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Shanghai

ncbi_isolation_source: enrichment culture DH1 from tap water in Fudan University; urea

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Fudan University


ncbi_organism_name: Brucella abortus NI352

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: acrmm

ncbi_submitter: NHGRI/NIH


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: Yonsei University


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolate: SPRUCE 294

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_strain_identifiers: SPRUCE 294

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Kocuria sp. CPCC 205235

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Kocuria;x__unclassified Kocuria;s__Kocuria sp. CPCC 205235


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Mariniflexile sp. HNIBRBA6329

ncbi_submitter: Honam National Institute of Biological Resources


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Nanchang university


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Salmonella sp. SKLX088683

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Iowa State University


ncbi_organism_name: Mediterraneibacter faecis


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_assembly_name: isolate VK_B

ncbi_isolate: Lactobacillus paracasei VK-B

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: Lactobacillus paracasei VK-B

ncbi_submitter: University of Tartu


ncbi_isolation_source: terrestrial

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: Japanese kaiwere shoots

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Radboudumc


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-DS2

ncbi_organism_name: Methylobacter sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Emergencia sp.


ncbi_country: China

ncbi_isolation_source: forest soil

ncbi_organism_name: Cohnella mopanensis

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_country: China: Xiamen

ncbi_isolation_source: Synechococcus culture from coastal marine water

ncbi_organism_name: Fluviicola sp. XM-24bin1

ncbi_submitter: Xiamen University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Fusobacterium pseudoperiodonticum

ncbi_submitter: Forsyth Institute


ncbi_country: South Korea

ncbi_submitter: Seoul National University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Microbacterium sp. O

ncbi_strain_identifiers: O

ncbi_submitter: University of Trento


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Streptomyces pratisoli

ncbi_submitter: Newcastle University


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Loyola University Chicago


ncbi_country: Spain: Alfacada pond; Ebro delta; Tarragona

ncbi_isolation_source: epidermal mucus of Anguilla anguilla fishes in Ebro delta

ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: University of Queensland


ncbi_country: Haiti: Cholera Treatment Center; Gressier

ncbi_isolation_source: Stool; Clinical

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: INRA


ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_organism_name: Mycobacterium colombiense

ncbi_submitter: JCVI


ncbi_isolation_source: Oral cavity

ncbi_organism_name: Candidatus Nanogingivalis gingivitcus

ncbi_submitter: University of Washington

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanogingivales;f__Candidatus Nanogingivalaceae;g__Candidatus Nanogingivalis;s__Candidatus Nanogingivalis gingivitcus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanogingivales;f__Candidatus Nanogingivalaceae;g__Candidatus Nanogingivalis;s__Candidatus Nanogingivalis gingivitcus


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Litorilinea sp.

ncbi_submitter: RIKEN-BRC


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Altendorf


ncbi_country: USA: International Space Station

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: Shenzhen Research Institute, The Chinese University of Hong Kong


ncbi_country: Belgium

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: rhizosphere soil culture M56

ncbi_organism_name: Pedobacter sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG13319

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain: Ribadeo; Galicia

ncbi_isolation_source: larvae

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: USA: California

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: Ameyamaea chiangmaiensis NBRC 103196

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: France

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Queensland


ncbi_assembly_name: Salmonella enterica CVM N44693 v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Chicken Wings

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_isolation_source: Colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antwerp


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Morocco: Legzira

ncbi_isolation_source: Shore seawater

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: University of Cambridge


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: China: Yunnan

ncbi_isolation_source: tobacco leaves

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Yunnan Academy of Tobacco Agriculture Science


ncbi_organism_name: Fusobacterium nucleatum 13_3C

ncbi_submitter: Broad Institute


ncbi_country: South Korea: Seoul

ncbi_isolation_source: urine

ncbi_strain_identifiers: EFA 62

ncbi_submitter: Yonsei Medical Center


ncbi_country: Morocco: Errachidia; Merzouga

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Microbial Biotechnology Laboratory


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University, Nanchang University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_assembly_name: Rumen uncultured genome RUG14852

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Micromonospora taraxaci

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: meat

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Promineifilum sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Promineifilum;x__unclassified Candidatus Promineifilum;s__Promineifilum sp.


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Rhodococcus globerulus

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: South Korea: Uiseong-gun

ncbi_isolation_source: intestine

ncbi_organism_name: Kocuria sp. BT304

ncbi_submitter: Kyung Hee University


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: North Sea

ncbi_isolation_source: coastal sea water column HE361-13 at a depth of 350m

ncbi_organism_name: Halieaceae bacterium


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: feces from farm

ncbi_organism_name: Campylobacter coli

ncbi_submitter: One Health Poultry Hub


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Switzerland

ncbi_isolation_source: sporadic listeriosis case

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: USA: California

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of California San Diego


ncbi_organism_name: Lysinibacillus sp. NPDC094177

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Niger

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 2002007

ncbi_submitter: IGS


ncbi_organism_name: Propioniciclava sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: rock

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: EPFL


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Poseidonia sp.

ncbi_submitter: Tang lab

ncbi_taxonomy: d__Archaea;p__Thermoplasmatota;c__Candidatus Poseidoniia;o__Candidatus Poseidoniales;f__Candidatus Poseidoniaceae;g__Candidatus Poseidonia;s__

ncbi_taxonomy_unfiltered: d__Archaea;x__Methanobacteriati;p__Thermoplasmatota;c__Candidatus Poseidoniia;o__Candidatus Poseidoniales;f__Candidatus Poseidoniaceae;g__Candidatus Poseidonia;x__unclassified Candidatus Poseidonia;s__Poseidonia sp.


ncbi_country: Italy

ncbi_isolation_source: dairy Products

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Udine


ncbi_country: China: Taiyuan

ncbi_isolation_source: Soak chicken

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC063F10

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: Paracoccus sp. 22332

ncbi_submitter: Yantai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. 22332


ncbi_organism_name: Bacillus bombysepticus

ncbi_submitter: FCAV/UNESP. Universidade Estadual Paulista


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Robinsoniella peoriensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sam Houston State University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Reinekea sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: [Mycobacterium] chelonae subsp. gwanakae

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolate: AOP33_10_coeur _bin _5

ncbi_organism_name: Latilactobacillus curvatus

ncbi_strain_identifiers: AOP33_10_coeur _bin _5

ncbi_submitter: Genoscope


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Guelph

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_organism_name: Aeromonas jandaei

ncbi_strain_identifiers: SET

ncbi_submitter: University of Georgia


ncbi_isolation_source: human gut

ncbi_organism_name: Enterobacter cloacae


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Parabacteroides johnsonii


ncbi_country: United Kingdom

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Australia: Boho South; VIC

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Australia: Rockhampton

ncbi_isolation_source: rumen

ncbi_organism_name: Anaerovibrio sp. JC8

ncbi_submitter: CSIRO


ncbi_country: USA: Umatilla County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1C5

ncbi_submitter: Oregon State University


ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_strain_identifiers: NCPPB 1158

ncbi_submitter: University of Exeter


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Bipolaricaulis sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;x__unclassified Candidatus Bipolaricaulis;s__Candidatus Bipolaricaulis sp.


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Syntrophales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: cecal content

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw;x__Salmonella enterica subsp. enterica serovar Rubislaw str. SA20030553


ncbi_country: Germany: Kiel

ncbi_isolation_source: Supermarket

ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Hallerella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Helicobacter pylori GAM100Ai

ncbi_submitter: Washington University


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-6334

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: spinal fluid

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China: Yunnan; Kunming

ncbi_isolation_source: blood

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Rhizobiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Pacific Ocean: South China sea: Haima seep

ncbi_isolation_source: cold seep sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: Germany

ncbi_isolation_source: lung

ncbi_organism_name: Streptobacillus felis

ncbi_submitter: Robert Koch Institute


ncbi_country: USA: NY

ncbi_isolation_source: intestine


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Surveillance swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Sulfitobacter indolifex HEL-45

ncbi_submitter: The Gordon and Betty Moore Foundation Microbial Genome Sequencing Project


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_country: Australia: Melbourne

ncbi_submitter: Biomedicine Discovery Institute


ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus urinae

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Silver Spring

ncbi_organism_name: Lachnospira eligens

ncbi_submitter: US Food and Drug Administration


ncbi_country: Bangladesh

ncbi_isolation_source: Citrus sp.

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Fimbriimonadaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: marine metagenome


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: DHS Bioreactor

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: Water Quality Control Lab, Division of Environmental Engineering, Faculty of Engineering, Hokkaido University


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10658

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA: Tennessee

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark

ncbi_isolation_source: salpingitis

ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 47

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_organism_name: Acidovorax temperans

ncbi_submitter: CLUE-TERRA


ncbi_country: India: Bareilly

ncbi_isolation_source: heart blood

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: SDHB

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: feces

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Spain: Seville

ncbi_isolation_source: Rectal swab

ncbi_submitter: Hospital Virgen Macarena


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: subgingival dental plaque

ncbi_organism_name: Prevotella nigrescens

ncbi_strain_identifiers: KCOM 1102

ncbi_submitter: Chosun University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Korea: Yellow Sea

ncbi_isolation_source: tidal flat

ncbi_organism_name: Metabacillus litoralis

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Caulobacter sp.

ncbi_submitter: Friedrich Schiller University Jena


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Vienna


ncbi_country: Tanzania

ncbi_isolation_source: milk

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Celeribacter sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Hydrogenobacter thermophilus

ncbi_submitter: Sun Yat-Sen University