ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Sichuan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


gtdb_representative: t

gtdb_type_species_of_genus: t

ncbi_country: China: Weihai

ncbi_isolation_source: sea ice

ncbi_organism_name: Algoriphagus ratkowskyi

ncbi_submitter: Shandong Uniwersity at Weihai

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: Citrus paradisi

ncbi_organism_name: Mesoplasma florum

ncbi_submitter: Ginkgo Bioworks Inc.


ncbi_country: USA: Unknown

ncbi_submitter: JCVI


ncbi_isolation_source: pork

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: ANSES


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Achromobacter sp. UBA2119

ncbi_submitter: University of Queensland


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Intestinimonas sp.

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Intestinimonas;x__environmental samples;s__uncultured Intestinimonas sp.


ncbi_organism_name: Olsenella phocaeensis

ncbi_submitter: URMITE


ncbi_country: China

ncbi_isolation_source: Mount Everst

ncbi_organism_name: Sphingomonas sp. S2-65

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: China University of Geosciences


ncbi_country: Israel

ncbi_isolation_source: cowshed 10

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heriot-Watt University


ncbi_country: Norway

ncbi_isolation_source: FRDC_Fjaler soil; pH 7.4

ncbi_organism_name: Pseudomonas sp. A25(2017)

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: Ground lamb

ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_submitter: Agroscope


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Gammaproteobacteria bacterium TMED243

ncbi_submitter: University of Southern California


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_country: USA: Texas; Corpus Christi

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio rotiferianus

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: South Korea: Taean-gun

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Seoul National University


ncbi_isolation_source: drinking water

ncbi_organism_name: Methylocystaceae bacterium UBA4761

ncbi_submitter: University of Queensland


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. TH243-1LC

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. TH243-1LC


ncbi_country: Brazil: Campinas

ncbi_isolation_source: Surveillance swab

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: China: Anhui

ncbi_isolation_source: Pleural effusion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_country: USA: Nevada

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS, Western Regional Research Center


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Russia

ncbi_isolation_source: not known


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: Companilactobacillus futsaii

ncbi_submitter: Chengdu Medical College


ncbi_organism_name: Brevibacillus borstelensis

ncbi_refseq_category: reference genome

ncbi_submitter: Sandia National Laboratories


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: University of Galway


ncbi_country: Brazil: Eastern Amazon

ncbi_isolation_source: pasture soil

ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_country: China: Baoding

ncbi_isolation_source: dry soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Hebei Academy of Agricultural and Forestry Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-424-G03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: Salmonella enterica CVM N51277 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonella sp.


ncbi_organism_name: uncultured Kordiimonadaceae bacterium


ncbi_country: Viet Nam: Da Lat

ncbi_isolation_source: Commercial plant nursery

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Ruegeria sp. MALMAid1280

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_assembly_level: Chromosome

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China Medical University


ncbi_organism_name: Undibacterium sp. Xuan67W

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 762

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Lachnospiraceae bacterium HCP1S3_D6

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Armatimonadaceae bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: EMG


ncbi_organism_name: Jannaschia helgolandensis

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: CAU


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Marine research


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Micromonospora ureilytica

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangxi

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Pantoea sp. RRHST58

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Mesorhizobium sp. M0847

ncbi_submitter: Washington State University


ncbi_country: China

ncbi_organism_name: Planomicrobium sp. YIM 101495

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_submitter: Cornell University


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: metagenome

ncbi_organism_name: Chloroflexus aurantiacus

ncbi_submitter: University of Queensland


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: Brazil: Minas_Gerais_1

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_isolation_source: stool

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000952


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paludibacillus litoralis

ncbi_submitter: Cong Sun Research Group


ncbi_country: Turkey: Izmir

ncbi_isolation_source: legume rhizospheres

ncbi_organism_name: Streptomyces sp. M1013

ncbi_submitter: Institute for Integrative Biology of the Cell


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Escherichia coli O111:NM str. K6908

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. K6908


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterocloster citroniae

ncbi_submitter: EMG


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: UCI


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: URMITE


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada

ncbi_isolation_source: Bison

ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: Canadian Bison;A0369

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Catellatospora methionotrophica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Acutalibacter sp. 1XD8-33

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Africa: Tau Tona mine in Carletonville district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Ignavibacterium album

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3075

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: China: Qinghai-Tibetan Plateau; Qinghai Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Lunatibacter salilacus

ncbi_submitter: State Key Laboratory of Biogeology and Environmental Geology


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Chong Kun Dang Bio (CKDBIO)


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Candidatus Phytoplasma stylosanthis

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrVIII (Loofah witches'-broom group);s__Candidatus Phytoplasma stylosanthis


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bartonella apis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: USA: Lake Washington

ncbi_isolation_source: sediment

ncbi_organism_name: Methylobacter sp. UBA2091

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Japan

ncbi_isolation_source: stool

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Chicago


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: uncultured Gaiellales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium RBG_16_45_19


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: United Kingdom: England

ncbi_isolation_source: Cecal contents

ncbi_organism_name: Campylobacter jejuni


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis


ncbi_organism_name: Paenibacillus hunanensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Catalina harbor; Catalina CA

ncbi_isolation_source: marine sediment

ncbi_organism_name: Idiomarina loihiensis

ncbi_submitter: University of Cincinnati


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Blautia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Gansu

ncbi_isolation_source: wound secretion

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Mexico: Guaymas Basin

ncbi_organism_name: Candidatus Zipacnadia bacterium

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;c__Candidatus Zipacnadia;x__unclassified Candidatus Zipacnadia;s__Candidatus Zipacnadia bacterium


ncbi_organism_name: Marinobacter salsuginis

ncbi_submitter: Tsinghua University


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu; Suzhou

ncbi_isolation_source: respiratory tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_country: China: Yunnan

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Mucilaginibacter boryungensis

ncbi_submitter: Korean Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Methylovirgula sp.


ncbi_organism_name: Catalimonadaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Desulfovibrio fairfieldensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. URMC 128

ncbi_strain_identifiers: URMC 128

ncbi_submitter: University of Rochester


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Cadiz


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Azospira sp. APE16

ncbi_submitter: Qingdao University of Science and Technology


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: DaPeng Bay

ncbi_organism_name: Neptunomonas sp. XY-337

ncbi_submitter: Shenzhen University


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Leeia oryzae DSM 17879

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Neisseriales;f__Leeiaceae;g__Leeia;s__Leeia oryzae;x__Leeia oryzae DSM 17879


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail fresh oregano

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWB2_40_8


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: Riverside; Ca

ncbi_isolation_source: Nectary

ncbi_organism_name: Apilactobacillus micheneri

ncbi_submitter: University of California, Riverside


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: urine

ncbi_submitter: JCVI


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: USA: OH

ncbi_organism_name: Klebsiella pneumoniae VA360

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Senegal

ncbi_isolation_source: host stool sample

ncbi_organism_name: Phytobacter massiliensis JC163

ncbi_submitter: Laboratoire URMITE CNRS 6236


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Collinsella ihumii

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Denmark

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:389

ncbi_submitter: DTU


ncbi_organism_name: Actinomycetaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: Sphingomonas sp. NPDC092331

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Butyricimonas sp. DFI.6.44

ncbi_submitter: University of Chicago


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhodoferax sp. OV413

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_organism_name: Segatella copri


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: IMG-taxon 2695420944 annotated assembly

ncbi_organism_name: Chryseobacterium takakiae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Argentina

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: Norman; OK

ncbi_isolation_source: Untreated municipal wastewater

ncbi_organism_name: Cloacibacterium normanense

ncbi_submitter: The Jackson Laboratory


ncbi_organism_name: Capillibacterium sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Capillibacterium;x__unclassified Capillibacterium;s__Capillibacterium sp.


ncbi_organism_name: Streptococcus agalactiae FSL S3-586

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Treponema denticola

ncbi_submitter: Forsyth Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Lesotho

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Moscow region

ncbi_isolation_source: Throat swab (tonsillitis)

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SRCAMB


ncbi_country: China: Yushu Prefecture; Qinghai Province

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Berryella wangjianweii

ncbi_submitter: China CDC


ncbi_isolation_source: soil

ncbi_organism_name: Paradevosia shaoguanensis

ncbi_submitter: Beijing University of Chemical Technology

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Bacteroides ovatus CL02T12C04

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Gilliamella apicola


ncbi_country: China: Jing Zi Habour; Weihai

ncbi_isolation_source: red alga

ncbi_organism_name: Fulvivirga sp. M361

ncbi_submitter: Shandong University at Weihai


ncbi_country: Russia: Kislovodsk

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_submitter: University of Alberta


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_country: Japan

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: marine

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: University of Queensland


ncbi_country: Japan: Tokyo

ncbi_organism_name: Azospirillum sp. TSH20

ncbi_submitter: University of Minnesota


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gordonia sp. VNQ95

ncbi_submitter: Kyonggi university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. VNQ95


ncbi_country: China:Tibet Plateau

ncbi_isolation_source: stool


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: chicken litter

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Germany: mining area; well

ncbi_isolation_source: mining area

ncbi_organism_name: Kineosporia sp. R_H_3

ncbi_submitter: TU Berlin


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: France: Durance River

ncbi_isolation_source: fresh river water

ncbi_organism_name: Dickeya chrysanthemi

ncbi_submitter: Sorbonne University


ncbi_assembly_name: Rumen uncultured genome RUG10260

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Texas

ncbi_isolation_source: broiler chicken gut

ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: TAMU

ncbi_submitter: Northern Illinois University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient27 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: University Hospital Center and University of Lausanne


ncbi_organism_name: Lachnobacterium bovis C6A12


ncbi_organism_name: Pseudoalteromonas sp. SIMBA_162

ncbi_submitter: SIMBA


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Poland

ncbi_isolation_source: Food: Wild boar meat

ncbi_organism_name: Moellerella wisconsensis

ncbi_submitter: University of Zurich


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Caecum


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: artisanal lactic starter (Grana Padano)

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: CIRM-BIA 2188

ncbi_submitter: Brigham Young University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Miami


ncbi_country: USA: California

ncbi_organism_name: Rhodococcoides kroppenstedtii

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_isolation_source: sediment

ncbi_organism_name: Pseudooceanicola marinus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_assembly_name: Escherichia coli CVM N34228PS v1.0

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N34228PS

ncbi_submitter: FDA


ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: Hungatella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Leptospira koniambonensis

ncbi_submitter: Yenepoya (Deemed to be University)


ncbi_organism_name: Flavonifractor plautii


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: uncultured Senegalimassilia sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: MPI for marine Microbiology


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Galway

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Salmonella sp. NW704

ncbi_submitter: Sichuan University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Cyanobacteria bacterium J06638_7

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06638_7


ncbi_organism_name: Gardnerella leopoldii

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Bradyrhizobium sp. DASA03007

ncbi_submitter: Suranaree University of Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Acidovorax sp. Leaf78

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: India: Vellore

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Christian Medical College


ncbi_country: Greece

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: CIRM BIA 1379

ncbi_submitter: Agroscope


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Fusobacterium pseudoperiodonticum

ncbi_submitter: Forsyth Institute


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NNSp 2751

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Colombia: Bolivar

ncbi_submitter: Universidad El Bosque


ncbi_country: Netherlands: Olburgen

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; full scale (600m3) reactor for the removal of ammonium from wastewater from the potato processing industry

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;o__Candidatus Tepidiaquacellales;x__unclassified Candidatus Tepidiaquacellales;s__Candidatus Tepidiaquacellales bacterium OLB4/UTCHB1


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Bielefeld University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Paenibacillus sp. FSL R7-0337

ncbi_submitter: Penn State


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0709

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: URMITE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Singapore: Singapore General Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_organism_name: Azospirillum sp. 412522

ncbi_submitter: Universidade Estadual do Norte Fluminense Darcy Ribeiro


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Metabacillus niabensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Japan

ncbi_isolation_source: Infant feces

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Korea University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_country: Belgium

ncbi_submitter: San Diego State University


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Iceland

ncbi_isolation_source: gut from farmed juvenile Arctic char

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Matis ohf


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: clinical material

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: China: Guangdong; Guangzhou

ncbi_isolation_source: water

ncbi_organism_name: Acidithiobacillus ferrooxidans


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human gut

ncbi_organism_name: Paraprevotella clara


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: Russia: Moscow

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_strain_identifiers: Ogawa RND19188

ncbi_submitter: Central Research Institute for Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_country: Russia: Nizhniy Novgorod

ncbi_isolation_source: wound discharge

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_organism_name: Gluconobacter oxydans NBRC 3293

ncbi_strain_identifiers: NBRC 3293

ncbi_submitter: Department of Biological Chemistry, Faculty of Agriculture, Yamaguchi University


ncbi_country: Taiwan

ncbi_isolation_source: Taichung Veterans General Hospital

ncbi_strain_identifiers: Dirty Dan

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Chicago


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: China: Hangzhou

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: China: Kunming

ncbi_isolation_source: sediment of lake

ncbi_organism_name: Massilia sp. YIM B02769

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Oxalobacteraceae;x__Telluria group;g__Massilia;x__unclassified Massilia;s__Massilia sp. YIM B02769


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: University of East Anglia


ncbi_country: China: Shandong

ncbi_isolation_source: coastal sediment

ncbi_organism_name: Mangrovivirga halotolerans

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Germany

ncbi_isolation_source: colostrum

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Trinity College Dublin


ncbi_country: Portugal

ncbi_isolation_source: fresh chicken meat

ncbi_organism_name: Helicobacter pullorum

ncbi_submitter: National Institute of Health, Portugal


ncbi_country: Czech Republic: Prague

ncbi_isolation_source: digestive tract of a wasp

ncbi_organism_name: Vagococcus entomophilus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: Russia: Saint Petersburg

ncbi_isolation_source: tongue

ncbi_organism_name: Yersinia rohdei

ncbi_strain_identifiers: 2391 StPb PI

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7222

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: kefir

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: KR

ncbi_submitter: SysMilk


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: SC


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: ChongQing Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_assembly_name: IMG-taxon 2687453778 annotated assembly

ncbi_organism_name: Stutzerimonas xanthomarina DSM 18231

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Kenya

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MMUST


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Estonia

ncbi_isolation_source: internal organs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii


ncbi_organism_name: Conexibacter sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Shangdong

ncbi_isolation_source: chicken

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Parabacteroides distasonis


ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Streptomyces cinereoruber


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Flavobacterium plurextorum

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Kineosporiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Burkholderiaceae bacterium


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_submitter: EMG


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Bacteroidetes bacterium ADurb.Bin041

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium ADurb.Bin041


ncbi_organism_name: Bacillus sp. JHAA

ncbi_strain_identifiers: JHAA

ncbi_submitter: Illinois Wesleyan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JHAA


ncbi_isolation_source: Faeces

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium sp. ACRQL

ncbi_strain_identifiers: ACRQL

ncbi_submitter: NHGRI/NIH


ncbi_submitter: National Livestock&Fisheries Development Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Russia: Moscow; Taman Peninsula

ncbi_isolation_source: terrestrial mud volcano Karabetova Gora

ncbi_organism_name: Pelovirga terrestris

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Erysipelotrichaceae bacterium UBA2212

ncbi_submitter: University of Queensland


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Mitsuokella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_assembly_name: R-75725 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: gamma proteobacterium SCGC AAA076-D13

ncbi_strain_identifiers: SCGC AAA076-D13

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium SCGC AAA076-D13


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Bacteroides caecimuris


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Italy: Verona

ncbi_isolation_source: Taleggio cheese

ncbi_organism_name: Leuconostoc mesenteroides subsp. mesenteroides

ncbi_submitter: University of Verona


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Orebro University


ncbi_country: USA: MO

ncbi_submitter: Broad Institute


ncbi_country: Iran: Zanjan

ncbi_isolation_source: Wheat rhizosphere

ncbi_organism_name: Pseudomonas tritici

ncbi_submitter: KU Leuven


ncbi_isolation_source: chicken carcass

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_organism_name: uncultured Persicobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: United Kingdom: Cholsey Sewage Treatment Works

ncbi_isolation_source: Freshwater river sediment

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: REHAB


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: the seqafrica consortium


ncbi_country: Bangladesh

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock bioreactor

ncbi_organism_name: Paludibacter sp. 47-17

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: USAMRD-A


ncbi_country: Taiwan

ncbi_isolation_source: fermenter

ncbi_organism_name: Ruficoccus amylovorans

ncbi_submitter: Shandong university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprobacter fastidiosus

ncbi_submitter: EMG


ncbi_organism_name: Polaribacter sp. MED152

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_country: Brazil

ncbi_isolation_source: blood total

ncbi_organism_name: Providencia stuartii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: MD

ncbi_organism_name: Coprococcus comes

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolate: CON2 bin22

ncbi_organism_name: Succinivibrionaceae bacterium

ncbi_strain_identifiers: CON2 bin22

ncbi_submitter: China Agricultural University


ncbi_country: USA: North Carolina

ncbi_isolate: Ash

ncbi_isolation_source: Aphis craccivora (cowpea aphid) on Robinia pseudoacacia (locust)

ncbi_organism_name: Arsenophonus endosymbiont of Aphis craccivora

ncbi_strain_identifiers: Ash

ncbi_submitter: University of Kentucky


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_isolation_source: Lobaria metagenome

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Listeria monocytogenes SLCC5850

ncbi_submitter: ERA-NET / Spatelis


ncbi_isolation_source: The Red Sea

ncbi_organism_name: Sulfitobacter sp. Ks13

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: Antarctica:Lake Vida

ncbi_isolation_source: Lake Vida

ncbi_organism_name: Kocuria sp. KD4

ncbi_submitter: Northwest Institute of Eco-Environment and Resources,CAS


ncbi_isolation_source: Faeces

ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_submitter: Anses


ncbi_organism_name: Streptomyces sp. NPDC005479

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: soil

ncbi_organism_name: Homoserinibacter sp. YIM 151385

ncbi_submitter: Yunnan University


ncbi_country: USA

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_40_37


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation (CSIRO)


ncbi_organism_name: Streptococcus hyointestinalis

ncbi_submitter: Nanjing University


ncbi_country: China: Sichuang

ncbi_isolation_source: pork trim

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Canada: Vancouver; BC

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa C1913C

ncbi_submitter: University of Texas at Austin


ncbi_country: Sweden

ncbi_organism_name: Glaesserella parasuis D74

ncbi_submitter: USDA-ARS


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Tateyamaria sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Negativicoccus massiliensis


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Leyella stercorea

ncbi_submitter: EMG


ncbi_country: China: Guizhou; Jiuan

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Stanford Healthcare


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Symbiothrix sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Symbiothrix;x__unclassified Candidatus Symbiothrix;s__Candidatus Symbiothrix sp.


ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri 2002140

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_organism_name: Streptomyces sp. NPDC056527

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Brevibacillus brevis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Mycolicibacterium elephantis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Streptomyces sp. LN590

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 995

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured beta proteobacterium


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: University of Southern California


ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Leptospira sp. SA-E8

ncbi_submitter: Yenepoya (Deemed to be University)


ncbi_organism_name: Burkholderia sp. IT-111MI5

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: NATIONAL INSTITUTE OF IMMUNOLOGY, NEW DELHI, 110067.


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Olsenella timonensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: USA: Daniel Boone National Forest; KY

ncbi_isolate: MAG 15

ncbi_isolation_source: acid mine drainage site biofilm from Rose Pool

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_strain_identifiers: MAG 15

ncbi_submitter: University of California Davis


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: EMG


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Australia: Sydney

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Italy

ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Bacillus mobilis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_country: USA: Ohio

ncbi_isolation_source: Alimentary canal

ncbi_organism_name: Paludibacter sp. 221

ncbi_submitter: The Ohio State University


ncbi_country: Ecuador

ncbi_isolation_source: land iguanas

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Manhattan


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: Paenibacillus sp. TAB 01

ncbi_strain_identifiers: TAB 01

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;x__unclassified Paenibacillus;s__Paenibacillus sp. TAB 01


ncbi_country: Taiwan

ncbi_isolation_source: fermented meat sausages(food)

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: National Chung Hsing University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Phaeodactylibacter sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Burkholderia vietnamiensis G4

ncbi_submitter: US DOE Joint Genome Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_submitter: Wuhan University


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Brazil

ncbi_isolation_source: final product sale animal origin

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Pacificibacter sp.

ncbi_submitter: Yantai University


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Oscillatoria sp.

ncbi_submitter: Sun Yat-sen University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Poland: Poznan

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: National Medicines Institute


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Cambodia

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: coral

ncbi_organism_name: Paracoccus sp. R12_2

ncbi_submitter: University of Konstanz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. R12_2


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Australia: Katherine; Northern Territory

ncbi_isolation_source: Bonamia pannosa

ncbi_organism_name: Candidatus Phytoplasma bonamiae

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma bonamiae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Italy: Torino

ncbi_isolation_source: cleanroom facility; TAS-I

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_assembly_name: IMG-taxon 2609459743 annotated assembly

ncbi_organism_name: Cupriavidus sp. OV038

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: sputum

ncbi_submitter: Children's Hospital Affiliated to Zhengzhou University


ncbi_country: USA: IA

ncbi_isolation_source: porcine pig intestine small

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1404

ncbi_submitter: Broad Institute


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Mauritius


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_strain_identifiers: Patoc 1 (Paris)

ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira biflexa;x__Leptospira biflexa serovar Patoc;x__Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'


ncbi_organism_name: Escherichia coli KTE213


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas syringae pv. persicae

ncbi_strain_identifiers: ICMP 3706

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. persicae


ncbi_country: India: Hyderbad

ncbi_isolation_source: raw chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Oceaniradius stylonematis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Argentina

ncbi_isolation_source: Not known

ncbi_submitter: SC


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rissen


ncbi_country: Sudan

ncbi_organism_name: Brucella abortus 87/28

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Streptomyces sp. NPDC059809

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Bern


ncbi_organism_name: Blautia producta

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: Yangzhou University


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Prevotellaceae bacterium


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 1; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Taiwan

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: Academia Sinica


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NHGRI/NIH


ncbi_assembly_name: Salmonella enterica CVM N46827-R v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albany


ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Cardiff University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Brazil

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp. UBA6455

ncbi_submitter: University of Queensland


ncbi_country: India: Assam

ncbi_isolation_source: Retail market fish

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Indian Council of Agricultural Research-Central Institute of Fisheries and Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of South Australia


ncbi_country: China: Shandong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The First Institute of Oceanography,MNR


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Cyanophyceae cyanobacterium

ncbi_submitter: East China Normal University


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID5469

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Palmer LTER


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: Shrimps

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: milk

ncbi_organism_name: Viridibacillus sp. FSL H7-0596

ncbi_submitter: Cornell University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources