ncbi_organism_name: Streptococcus oralis

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Seoul National University


ncbi_assembly_level: Contig

ncbi_isolation_source: cold seep

ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Olsenella uli

ncbi_submitter: Georgia Institute of Technology


gtdb_representative: t

ncbi_organism_name: bacterium

ncbi_submitter: Kansas State University


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Malaya


ncbi_organism_name: uncultured Thalassolituus sp.

ncbi_submitter: EMG


ncbi_refseq_category: reference genome

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Candidatus Tisiphia;x__unclassified Candidatus Tisiphia;s__Candidatus Tisiphia endosymbiont of Stenodema calcarata


ncbi_country: Southern Ocean

ncbi_isolation_source: marine sediment

ncbi_organism_name: Pseudonocardia oceani

ncbi_submitter: University of Strathclyde


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodovulum sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Schaalia odontolytica


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_strain_identifiers: USDA 301

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: California

ncbi_isolation_source: Advanced Water Purification Facility

ncbi_organism_name: Rheinheimera sp.

ncbi_submitter: Colorado School of Mines


ncbi_country: Senegal

ncbi_isolation_source: breast milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IHU Genomes


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_submitter: University of Leicester


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: Salmonella enterica CVM N45941 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Pork Chops

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Ectopseudomonas toyotomiensis

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)


ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_isolation_source: human gut

ncbi_organism_name: Butyricimonas sp. An62

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Brigham Young University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_assembly_name: freshwater MAG --- AM-2014-D2_bin-097

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: University of Georgia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: University of Bern


ncbi_assembly_name: Burkholderia pseudomallei assembly

ncbi_organism_name: Burkholderia pseudomallei PB08298010

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_isolation_source: sediment

ncbi_organism_name: Halobacillus litoralis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Duncaniella sp.

ncbi_submitter: San Diego State University


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Russia: Yessentuki

ncbi_isolation_source: subsurface water

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A35

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: China

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia

ncbi_isolation_source: sputum sample from a patient with lung infection

ncbi_organism_name: Mycobacteroides abscessus M159

ncbi_submitter: Universiti Malaya, Kuala Lumpur


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: DTA

ncbi_submitter: Lebanese American University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Aarhus University


ncbi_country: China: Zhengzhou

ncbi_isolation_source: Ascitic fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Third Affiliated Hospital of Zhengzhou University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Bern


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: faeces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Quadram Bioscience Institute


ncbi_country: Japan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Nagoya University


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Eubacteriales Family XIII. Incertae Sedis bacterium


ncbi_country: China: Guangzhou; Guangdong

ncbi_isolation_source: feces

ncbi_submitter: Nanfang Hospital, Southern Medical University


ncbi_isolation_source: Caecum

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NNPa 2838

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus 12310

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 12310


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: stool sample from 53 year old healthy female

ncbi_organism_name: Acinetobacter sp. N54.MGS-139

ncbi_submitter: The Mayo Clinic


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB241_528K19

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Department of Pathophysiology and Host Defense, The Research Institute of Tuberculosis, Japan Anti-Tuberculosis Association


ncbi_assembly_name: IMG-taxon 2671180112 annotated assembly

ncbi_organism_name: Chitinophaga costaii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Albidovulum sp.

ncbi_submitter: Portland State University


ncbi_country: China: Harbin

ncbi_isolation_source: fresh intestinal feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Northeast Agricultral University


ncbi_country: China: Laixi; Qingdao

ncbi_isolation_source: peanut rhizosphere soil

ncbi_organism_name: Leifsonia sp. AG29

ncbi_submitter: Shandong Peanut Reaearch Institute


ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Chlamydiia bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: KAUST


ncbi_organism_name: Gordonia sp. NPDC127522

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. NPDC127522


ncbi_organism_name: Bacillus capparidis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: Lutimonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: uncultured Rhodocyclaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phaeobacter piscinae

ncbi_submitter: Technical University of Denmark (DTU)


ncbi_organism_name: Ochrobactrum sp. BD67

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_organism_name: Salmonella sp. 2021_1648

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: New Zealand: Canterbury

ncbi_isolate: Oxford

ncbi_isolation_source: psyllid collected from Fuchsia excorticata

ncbi_organism_name: Candidatus Liberibacter ctenarytainae

ncbi_strain_identifiers: Oxford

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd


ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Delhi

ncbi_isolation_source: dead mosquito larvae

ncbi_organism_name: Bacillus xiamenensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Mesonia mobilis

ncbi_submitter: Xiamen University


ncbi_isolate: SUP05 MAG-5

ncbi_organism_name: Candidatus Thioglobus vulcanius

ncbi_strain_identifiers: SUP05 MAG-5

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;s__Candidatus Thioglobus vulcanius

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;s__Candidatus Thioglobus vulcanius


ncbi_assembly_level: Chromosome

ncbi_organism_name: Bacillus cereus ATCC 10876

ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus ATCC 10876


ncbi_country: China

ncbi_isolation_source: superior fermented meat

ncbi_organism_name: Lactiplantibacillus paraplantarum

ncbi_submitter: China Agricultural University


ncbi_country: Israel

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: KOlimastIR


ncbi_isolation_source: marine water

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Iran: Esfhan

ncbi_isolation_source: Tracheal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pasteur Institute of Iran


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Propionibacterium sp. KPL1844

ncbi_submitter: Broad Institute


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B283;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Psychrobacter sp. UBA6684

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: marine

ncbi_organism_name: Paracoccaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: shandong university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_submitter: University of Leicester


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_submitter: Toho University


ncbi_country: USA: Texas

ncbi_isolation_source: pharyngeal wash sample

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_country: China: Qinghai Province

ncbi_isolation_source: feces

ncbi_organism_name: Lysinibacillus sp. S2017

ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: USA: NC

ncbi_isolation_source: Core; Other Plant

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bifidobacterium bifidum CAG:234

ncbi_submitter: DTU


ncbi_country: Malaysia: Segamat

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Monash University Malaysia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_organism_name: Polaribacter vadi

ncbi_submitter: EMG


ncbi_country: China: Sichuang

ncbi_isolation_source: root soil of Plantago asiatica L.

ncbi_organism_name: Pseudomonas sp. NyZ480

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: China: Xuzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Acetobacter estunensis

ncbi_submitter: Ghent University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 69

ncbi_submitter: SC


ncbi_country: Kenya

ncbi_organism_name: Spirochaetales bacterium UBA6482

ncbi_submitter: University of Queensland


ncbi_organism_name: Sphingobacterium spiritivorum

ncbi_submitter: Universite Paris Saclay


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium OF25-8pH10A

ncbi_submitter: BGI-Shenzhen


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: pus

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_country: Antarctica

ncbi_isolation_source: H2-incubated subglacial sediment

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Institute of Oceanography, Shanghai Jiao Tong University, China


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured OCS116 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;x__OCS116 cluster;x__environmental samples;s__uncultured OCS116 cluster bacterium


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Cellulomonas sp. NTE-D12

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWC2_42_20


ncbi_country: South Africa: Edendale

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0052

ncbi_submitter: Broad Institute


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas denitrificans (nom. rej.)

ncbi_submitter: University of Washington


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Nangjing agricultural university


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Southern California


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Bronchial washing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University College of medicine


ncbi_country: China: Yinshan Lead-Zinc Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Pakistan

ncbi_submitter: University of Tuebingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aurantiaca;x__Pseudomonas chlororaphis subsp. aurantiaca PB-St2


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Chai Nat

ncbi_isolation_source: Pla-ra; fermented fish

ncbi_organism_name: Lactobacillus sp. GPR40-2

ncbi_submitter: Chandrakasem Rajabhat University


ncbi_country: China

ncbi_isolation_source: fece

ncbi_organism_name: Bifidobacterium longum

ncbi_strain_identifiers: VHProbi Y08

ncbi_submitter: Nutrition &Health Technology Center


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: desert regolith

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Loclat_bin-01631

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ajou university


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Mexico

ncbi_isolation_source: hepatopancrease

ncbi_submitter: UT Southwestern Medical Center


ncbi_country: Australia: Sydney; NSW

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Candidatus Elulimicrobium sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy: d__Bacteria;p__Candidatus Elulimicrobiota;c__Candidatus Elulimicrobia;o__Candidatus Elulimicrobiales;f__Candidatus Elulimicrobiaceae;g__Candidatus Elulimicrobium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Elulimicrobiota;c__Candidatus Elulimicrobia;o__Candidatus Elulimicrobiales;f__Candidatus Elulimicrobiaceae;g__Candidatus Elulimicrobium;x__unclassified Candidatus Elulimicrobium;s__Candidatus Elulimicrobium sp.


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Zoogloea sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: IFR


ncbi_organism_name: Enterocloster sp.


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Lebanon

ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Marinobacter maritimus

ncbi_submitter: University of East Anglia


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: bacterium UBP15_UBA6099

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP15_UBA6099


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Methylibium sp. Pch-M

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Pantoea brenneri

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Poland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_country: Russia: Moscow region

ncbi_isolation_source: plant

ncbi_organism_name: Rathayibacter sp. VKM Ac-2929

ncbi_strain_identifiers: VKM Ac-2929

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: James Cook University


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Dorea sp. CAG:317

ncbi_submitter: DTU


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Longimicrobiaceae bacterium


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. WA_14881


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Carnobacterium sp. TMP28

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_organism_name: Streptosporangiaceae bacterium


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: liver

ncbi_organism_name: Escherichia coli O2:K1:H5

ncbi_strain_identifiers: APEC E19035

ncbi_submitter: Seoul National University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Final Effluent)

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Hebei

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_country: Bangladesh

ncbi_organism_name: Sphaerisporangium rubeum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Italy: Florence

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florence


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Chongqing

ncbi_isolation_source: silkworm intestine

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Southwest University


ncbi_country: Italy

ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Candidatus Evtepia faecavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;s__Candidatus Evtepia faecavium


ncbi_submitter: MRSN BI Team


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Anaerostipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Air filter

ncbi_organism_name: Methylorubrum populi

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


gtdb_type_species_of_genus: t

ncbi_country: China: Inner Mongolia

ncbi_organism_name: Paenalkalicoccus suaedae

ncbi_submitter: Inner Mongolia University


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg;x__Salmonella enterica subsp. enterica serovar Senftenberg str. NC_MB012510-0038


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Hong Kong: Chek Chau

ncbi_organism_name: Roseobacter sp. HKCCD7390

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Amycolatopsis sp. cg5

ncbi_submitter: hunankejidaxue


ncbi_organism_name: Microbacterium algeriense

ncbi_submitter: BGI Research


ncbi_assembly_name: Salmonella enterica CVM N51245 v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Pork Chops

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: China

ncbi_isolation_source: pus

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou University


ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_submitter: Genoscope CEA


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Iceland

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans 21

ncbi_submitter: Cornell University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB241_527G5

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada

ncbi_isolation_source: isolated from contaminated platelets

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Health Canada


ncbi_country: Belgium

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: strain 19

ncbi_submitter: University of Liege


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Bremen


ncbi_country: Malaysia: Johor; Muar; Kem Seri Ledang

ncbi_organism_name: Leptospira interrogans serovar Bataviae

ncbi_strain_identifiers: LepIMR 22

ncbi_submitter: Institute for Medical Research


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Sri Lanka: Galagadera

ncbi_isolation_source: Banana rhizosphere

ncbi_organism_name: Pseudomonas piscis

ncbi_submitter: KU Leuven


ncbi_organism_name: Gracilibacillus alcaliphilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: University of Iowa


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Japan

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium paraintracellulare

ncbi_submitter: Niigata University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Prochlorococcus sp. scB245a_520B18


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Dubosiella newyorkensis


ncbi_submitter: Universiteit Gent


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: NC

ncbi_organism_name: Priestia aryabhattai


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Zooshikella sp. RANM57

ncbi_submitter: St Aloysius (Deemed to be University) Mangaluru


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paraburkholderia sp. A2RO-4L


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Liaocheng university


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State University of Londrina


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Desulfovermiculus sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Paracoccus rhizosphaerae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Italy: Frasassi Cave system

ncbi_isolation_source: subsurface biofilms in sulfidic aquifier

ncbi_organism_name: Thiovulum sp.

ncbi_submitter: Leibniz Institute of Freshwater Ecology and Inland Fisheries


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Bacteroides xylanisolvens


ncbi_organism_name: Bacillus sp. CH_50

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CH_50


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mediterranean Sea

ncbi_isolation_source: 3;2-4;8 km off coast sea water

ncbi_organism_name: Jannaschia rubra

ncbi_strain_identifiers: CECT 5088

ncbi_submitter: UVEG


ncbi_country: India

ncbi_isolation_source: Mangrove soil and water

ncbi_organism_name: Streptomyces sp. EMB24

ncbi_submitter: Indian Institute of Technology Delhi


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudoalteromonas distincta

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: SWINE INTESTINE

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romana


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU1 evolved under selective conditions; BHI evolved gen 950 Population GS

ncbi_strain_identifiers: RU1 BHI9

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil

ncbi_isolation_source: seeds

ncbi_organism_name: Serratia marcescens

ncbi_submitter: UFBA


ncbi_organism_name: Sutterella sp. AF15-45LB

ncbi_submitter: BGI


ncbi_country: Italy

ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Gaopeijia maritima

ncbi_submitter: Shandong Univerity at Weihai


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- MJ_bin-1122

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B13(2017)

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Syntrophomonas sp. UBA1368

ncbi_submitter: University of Queensland


ncbi_country: Paraguay: Villeta

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Singapore

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_country: Japan:Fukuoka; Kasuya

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. LRP2-20

ncbi_submitter: Faculty of Engineering, Shizuoka University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Xanthomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Bradyrhizobium sp. F1.6.2

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: TS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Erasmus University Medical Center


ncbi_submitter: Penn State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis;x__Mycobacterium avium subsp. paratuberculosis MAP4


ncbi_isolation_source: aspirate

ncbi_submitter: SRCAMB


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Universiti Tunku Abdul Rahman


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Fusobacterium vincentii

ncbi_submitter: University of Guelph


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: China: Nanchang

ncbi_isolation_source: rectal swab from healthy participants

ncbi_submitter: beijing


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: burned soil

ncbi_organism_name: Enterovirga sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Corchorus olitorius

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Molecular Biology Lab


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Denmark

ncbi_isolation_source: rapid sand filter

ncbi_organism_name: Nitrospira sp.


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: Russia: North Ossetia

ncbi_isolation_source: aborted fetus

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Research Institute


ncbi_submitter: EMG


ncbi_country: Australia: Mt Mary; Victoria

ncbi_isolation_source: wine

ncbi_organism_name: Oenococcus oeni AWRIB576

ncbi_submitter: The Australian Wine Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ft. Benning; Georgia

ncbi_isolation_source: Nose from military trainee

ncbi_submitter: Uniformed Services University


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Pseudemcibacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_isolate: SPRUCE 78

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_strain_identifiers: SPRUCE 78

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Collinsella sp. LCP19S3_D4

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Research Institute for Systems Biology and Medicine (RISBM)


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Prochlorococcus marinus str. SS35

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterobacter mori

ncbi_submitter: Chinese Academey of Agricultural Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Birmingham


ncbi_submitter: Federal University of Minas Gerais

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Pedobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Animal and Plant Health Agency


ncbi_submitter: national health research institutes


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Streptomyces sp. NPDC056121

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Rothia dentocariosa

ncbi_submitter: University of Tennessee


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Microbispora rosea


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: unknown

ncbi_organism_name: Nitrospiria bacterium

ncbi_submitter: UNIVERSITY OF JENA


ncbi_organism_name: Haematobacter massiliensis

ncbi_submitter: CDC


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Urine

ncbi_organism_name: Winkia sp. UMB3164B

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG13344

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14769

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: groundwater

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B139;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_submitter: National University of Singapore


ncbi_country: Pacific Ocean: Western Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Actibacterium pelagium

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: not provided

ncbi_organism_name: Propionibacteriaceae bacterium


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: Argentina

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Crozon

ncbi_organism_name: Sphingomonas sp. CROZ-RG-20F-R02-07

ncbi_submitter: INRAE


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Italy: Lake Garda

ncbi_isolation_source: lake water

ncbi_organism_name: Sediminibacterium sp. FEMGT703S

ncbi_submitter: University of Trento


ncbi_organism_name: Gottfriedia solisilvae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: Australia: Brisbane

ncbi_organism_name: Slackia sp.

ncbi_submitter: The University of Queensland


ncbi_country: USA: DC

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H48052

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: 150 COD

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: water

ncbi_organism_name: Mycobacterium sp. shizuoka-1

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: China: Liaoning

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hubei University


ncbi_country: China: Shanghai

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: China: Henan

ncbi_organism_name: Escherichia sp. XD24

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Lachnotalea sp.

ncbi_submitter: EMG


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Nasopharygneal lavage

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 93_2


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: nasal swab

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_name: Rumen uncultured genome RUG10592

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Antarctica

ncbi_isolation_source: R2A medium

ncbi_organism_name: Comamonas antarctica

ncbi_submitter: Wuhan university


ncbi_assembly_name: freshwater MAG --- VK_bin-1759

ncbi_organism_name: uncultured Magnetospirillum sp.

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Sulfobium sp.

ncbi_submitter: Georgia Tech

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Candidatus Sulfobium;x__unclassified Candidatus Sulfobium;s__Candidatus Sulfobium sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter baumannii 16553_4

ncbi_submitter: Institute for Genome Sciences


ncbi_country: South Korea: Seoul

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: EFA 4

ncbi_submitter: Yonsei Medical Center


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Loyola University Chicago


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_country: South Korea: Jeju island

ncbi_isolation_source: forest soil

ncbi_organism_name: Flavobacterium solisilvae

ncbi_submitter: Chung ang university


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: sichuan university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Pseudofulvimonas gallinarii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Finland: Helsinki

ncbi_isolation_source: Vegetable sausage

ncbi_organism_name: Leuconostoc gelidum subsp. gelidum

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;x__Leuconostoc gelidum group;s__Leuconostoc gelidum;sb__Leuconostoc gelidum subsp. gelidum


ncbi_organism_name: Endozoicomonas lisbonensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: USA: Dansville; MI

ncbi_organism_name: Stenoxybacter acetivorans DSM 19021


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University College Cork


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: isolateA

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Helicobacter pylori SA144C

ncbi_submitter: MHH


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-6899

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Pacific Ocean: Caroline Seamount

ncbi_isolation_source: seawater

ncbi_organism_name: Oceanomicrobium pacificus

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Australia: Adelaide Hills; SA

ncbi_submitter: University of Queensland


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: bacterium


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Oliverpabstia intestinalis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Chthoniobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: SPRUCE 284

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 284

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Pseudomonas plecoglossicida

ncbi_submitter: Fisheries Research Institute of Fujian


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_assembly_name: freshwater MAG --- KTt_bin-1053

ncbi_organism_name: uncultured Pseudomonadota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Zhejiang University


ncbi_isolate: AOP29_B2_surf _bin _2

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP29_B2_surf _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 1585

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: USA

ncbi_isolation_source: groin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LHUB-ULB


ncbi_organism_name: Polyangiaceae bacterium


ncbi_country: Malaysia: Pahang

ncbi_isolation_source: marine sediment

ncbi_organism_name: Marinitenerispora sediminis

ncbi_submitter: University of Malaya


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. PDM29

ncbi_submitter: University of Chicago


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Sil NS 35

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Gambia

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Escherichia coli KTE128

ncbi_submitter: Broad Institute


ncbi_country: USA:California Monterey

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Mycobacterium neworleansense assembly 1

ncbi_organism_name: Mycolicibacterium neworleansense

ncbi_strain_identifiers: ATCC 49404T

ncbi_submitter: URMITE


ncbi_organism_name: Mesorhizobium sp. L2C067A000

ncbi_submitter: University of Southern California


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: river water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agriculture University


ncbi_country: Solomon Islands: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Livermore; CA

ncbi_isolation_source: microalgal biofuel cultivation pond

ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: Lawrence Livermore National Laboratory


ncbi_isolation_source: fermented meat

ncbi_organism_name: Loigolactobacillus coryniformis subsp. torquens

ncbi_submitter: University College Cork


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Tenacibaculum soleae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: coastal Georgia; Sapelo Island

ncbi_isolation_source: Coastal seawater

ncbi_organism_name: Phaeobacter sp.

ncbi_submitter: Sapelo Island Microbial Carbon Observatory


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Fujian

ncbi_isolation_source: 2219E medium

ncbi_organism_name: Photobacterium damselae

ncbi_submitter: Xiamen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Geneva University Hospitals


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Staphylococcus epidermidis SK135

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_submitter: JCVI


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Desantisiibacteriota;s__Candidatus Desantisbacteria bacterium CG_4_10_14_0_8_um_filter_39_17


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_country: United Kingdom: Bury

ncbi_isolation_source: dental abscess

ncbi_organism_name: Actinomyces oricola

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Synechocystis sp. PCC 6803

ncbi_submitter: Kazusa


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Princeton University


ncbi_country: China: Hunan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Sutcliffiella sp. BMC8

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Aminiphilus sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_country: China: Beijing

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodobacter sp. SY28-1

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Dengfeng

ncbi_isolation_source: soil

ncbi_organism_name: Lentzea terrae

ncbi_strain_identifiers: NEAU-LZS 42

ncbi_submitter: School of life science


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Oregon State University


ncbi_country: China

ncbi_isolation_source: surface water of the Shahu Lake

ncbi_organism_name: Sandarakinorhabdus sp. AAP62

ncbi_submitter: Institute of Microbiology, ASCR


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-02843

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hyphococcus lacteus

ncbi_submitter: Shandong Univerity


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Silver Spring

ncbi_organism_name: Streptococcus thermophilus LMD-9

ncbi_submitter: US Food and Drug Administration


ncbi_country: Belgium: Ghent

ncbi_isolation_source: top soil

ncbi_organism_name: Burkholderia sp. R-69927

ncbi_submitter: LM-UGent


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Ensifer sp. MJa1

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Inhella crocodyli

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii AB_TG2030

ncbi_submitter: Translational Genomics Research Institute


ncbi_isolation_source: Clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Tongue scraping

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Erwinia dacicola

ncbi_submitter: Universita di Udine


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Palmer LTER


ncbi_country: Switzerland

ncbi_isolation_source: human feces in bioreactor

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_organism_name: Mesomycoplasma hyorhinis MCLD

ncbi_strain_identifiers: MCLD

ncbi_submitter: The Hebrew University Hadassah Medical School


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: National Research and Innovation Agency


ncbi_organism_name: Modestobacter sp. SSW1-42

ncbi_submitter: BioPS Co., Ltd.


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Seoul National University


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Tenacibaculum sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Symbiobacteriaceae bacterium

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Victivallis vadensis


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S25

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Calgary


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Shinella sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Shangdong Province

ncbi_isolation_source: bark

ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_country: China: Baoding

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: CAU


ncbi_isolation_source: UCB-1 pistachio rootstock

ncbi_organism_name: Rhodococcoides fascians

ncbi_strain_identifiers: PBTS 2

ncbi_submitter: New Mexico State University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Stenotrophomonas sp.


ncbi_country: Thailand: Phitsanulok

ncbi_submitter: Cardiff University


ncbi_isolation_source: Groin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of California, Berkeley


ncbi_country: Belgium

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas sp. C8002

ncbi_submitter: Wageningen University & Research


ncbi_country: Colombia: Bogota

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Nagoya City Public Health Research Institute


ncbi_country: Kiribati: Phoenix Islands Protected Area

ncbi_isolation_source: seastar

ncbi_organism_name: Moritella sp. 36

ncbi_submitter: Wellesley College


ncbi_organism_name: uncultured Kingella sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Thailand

ncbi_isolation_source: soil

ncbi_organism_name: Actinocorallia sp. API 0066

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Sichuan University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Acinetobacter courvalinii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Streptococcus agalactiae STIR-CD-24

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-005-03_S3_C2

ncbi_submitter: IGS


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_country: Ireland: Dublin

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Maynooth University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Atopobiaceae bacterium UBA3639

ncbi_submitter: University of Queensland


ncbi_organism_name: Porticoccus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Microcystis sp. M38BS1

ncbi_submitter: Universite de Montreal


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: National Livestock Mission, DAHD; AINP on AMR (INFAAR)


ncbi_country: Spain: Asturias

ncbi_organism_name: Psychroflexus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_submitter: National Health Research Institutes


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: North Park Lake

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Pittsburgh


ncbi_country: France

ncbi_isolate: clinical strain from anonymous patient of Limoges Hospital

ncbi_isolation_source: blood culture

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: UNIVERSITY OF OXFORD


ncbi_country: Israel

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Unidad de Genomica y Bioinformatica


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_assembly_name: Rumen uncultured genome RUG10014

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Shandong

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_country: Australia: Bundaberg

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: La Trobe University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: BGI-Shenzhen


ncbi_country: Denmark

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Buchnera sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: water

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Huazhong University of Science and Technology


ncbi_country: USA: California

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UCI 51

ncbi_strain_identifiers: UCI 51

ncbi_submitter: Broad Institute


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Northwestern University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Philippines

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: International rice research institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: ONEOMICS PRIVATE LIMITED


ncbi_organism_name: Bifidobacterium bifidum


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Federal University of Rio de Janeiro