ncbi_organism_name: uncultured Muribaculaceae bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Mariniphaga sp.

ncbi_submitter: University of Waterloo


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcaceae bacterium UBA6842

ncbi_submitter: University of Queensland


gtdb_representative: f

ncbi_assembly_level: Contig

ncbi_organism_name: Blautia stercoris

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Clemson University


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Bordetella pertussis STO1-CHOC-0021

ncbi_submitter: JCVI


ncbi_isolation_source: skin infection


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis NM140

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 32_1

ncbi_organism_name: Flavobacteriales bacterium

ncbi_strain_identifiers: CIM:MAG 32_1

ncbi_submitter: Mayo Clinic


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Changhai Hospital Affiliated to Naval Military Medical University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Silvanigrellales bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: EMG


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Mucispirillum sp.


ncbi_assembly_level: Complete Genome

ncbi_country: Canada

ncbi_isolation_source: CA-MRSA blood site

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LNCC


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_isolation_source: sterile tissue

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Streptococcus agalactiae GB00561

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: USA: Lebananon; NH

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Roizmanbacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;x__unclassified Candidatus Roizmanbacteria;s__Candidatus Roizmanbacteria bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Geobacteraceae bacterium


ncbi_country: USA: Mississippi

ncbi_submitter: South American MRSA Consortium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: Moorella sp. E306M

ncbi_submitter: Laboratory of Marine Microbiology, Graduate School of Agriculture, Kyoto University


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: Center for Genome Regulation (CRG)

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Desulfobacterium sp.

ncbi_submitter: CNRS UMR6197


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_organism_name: Vitreimonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Neomicrothrix sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp.


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bdellovibrionales bacterium


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_organism_name: Ardenticatenia bacterium

ncbi_submitter: Portland State University


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: Alabama

ncbi_isolation_source: rhizosphere of the salt marsh grasses

ncbi_organism_name: Acidiferrobacterales bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_country: New Zealand: Ruakura

ncbi_organism_name: Pseudomonas savastanoi pv. glycinea

ncbi_strain_identifiers: ICMP 4181

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. glycinea


ncbi_country: Mexico: Navolato; Sinaloa

ncbi_isolation_source: Culiacan River; Cofradia de San Pedro

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: University of Technology Sydney


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Loyola University Chicago


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_organism_name: uncultured Dysosmobacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Jinhua

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Oceanococcaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Trichocoleus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Guelph


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_genome_category: derived from single cell

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Christensenellaceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acidiferrobacter sp.


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Xiamen University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nitrospinota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Nitrospinota;x__environmental samples;s__uncultured Nitrospinota bacterium


ncbi_organism_name: Enterococcus faecalis EnGen0331

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: China: Yantai

ncbi_isolation_source: blood

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_country: Australia: Marla

ncbi_isolation_source: soil

ncbi_organism_name: Amycolatopsis thermalba

ncbi_refseq_category: reference genome

ncbi_submitter: Northumbria University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Shigella sp. FJ201401

ncbi_submitter: Fujian Medical University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_country: USA: California

ncbi_isolation_source: Water sample

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: EPFL/Melanie Blokesch


ncbi_country: China: Great Khingan

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pinirhizobacter soli

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1574 from squamous cell carcinomas patient MST020

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_country: China: Dongying

ncbi_isolation_source: sludge

ncbi_organism_name: Stutzerimonas frequens

ncbi_submitter: Chinese Academy of Sciences (CAS)


ncbi_organism_name: Salmonella enterica subsp. arizonae

ncbi_submitter: SC


ncbi_country: China: Muztagh Glacier; Tibetan Plateau

ncbi_isolation_source: Thawed water

ncbi_organism_name: Massilia glaciei

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: France

ncbi_isolation_source: semen

ncbi_organism_name: Veillonella seminalis

ncbi_submitter: Institut Pasteur


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 124_3


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 202

ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: University of Calgary


ncbi_country: Czech Republic

ncbi_isolation_source: stool

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_country: USA: Louisiana

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Pusan National University


ncbi_organism_name: Cyclobacterium sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: plant matter [ENVO:01001121]

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces


ncbi_organism_name: Proteus sp. G4406

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4406


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Streptomyces avermitilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


gtdb_type_species_of_genus: t

ncbi_country: Malaysia

ncbi_isolation_source: mangrove

ncbi_organism_name: Mangrovactinospora gilvigrisea

ncbi_strain_identifiers: MUSC 26

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Palacky University Olomouc


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Yonsei University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Geotrupidae

ncbi_organism_name: Brevibacterium casei

ncbi_submitter: Xinjiang University


ncbi_organism_name: Acinetobacter radioresistens

ncbi_strain_identifiers: R 866 BER

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: China: Anhui

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: throat

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Spiroplasma sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of California, Berkeley


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_organism_name: Candidatus Palauibacter scopulicola

ncbi_submitter: university of alicante

ncbi_taxonomy: d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter scopulicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter scopulicola


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Quaid i Azam University


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: Chirstian Medical College


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_isolate: SPRUCE 416

ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 416

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Bern University


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: HRSE 25

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Xiamen

ncbi_isolation_source: activated sludge from full-scale wasterwater treatment

ncbi_organism_name: Thauera sp. 2A1

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Kanagawa

ncbi_organism_name: Nocardioides aromaticivorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Erwinia sp. STN24

ncbi_submitter: National Engineering School of Sfax


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: State Research Center for Applied Microbiology and Biotechnology


ncbi_isolation_source: closed biodigester

ncbi_organism_name: Bacillales bacterium UBA1424

ncbi_submitter: University of Queensland


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL020211

ncbi_submitter: Broad Institute


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 19 (4-7154984)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 19 (4-7154984)


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Michigan


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3020

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Acinetobacter tandoii

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Malaysia: Johor

ncbi_isolation_source: natural lake in Endau Rompin National Park

ncbi_organism_name: Pantoea sp. BL1

ncbi_submitter: University of Malaya


ncbi_organism_name: Candidatus Methylospira mobilis

ncbi_strain_identifiers: SPMX

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Pseudaminobacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: not provided

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA1103


ncbi_isolate: Xanthomonadaceae sp. RBC082

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Lysobacteraceae bacterium

ncbi_strain_identifiers: Xanthomonadaceae sp. RBC082

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Escherichia coli O157:H7 str. K4396

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K4396


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_country: Brazil

ncbi_isolation_source: soil

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo


ncbi_country: Nigeria

ncbi_submitter: Cepheid


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Limnoraphis robusta

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Tongji University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Jiangyin

ncbi_submitter: Jiangsu Province Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- KT6_bin-168

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_organism_name: Collinsella sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae BIDMC 52

ncbi_strain_identifiers: BIDMC 52

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae BIDMC 52


ncbi_country: USA: Conch Reef; Key Largo; Florida

ncbi_isolation_source: marine sponge

ncbi_organism_name: Micromonospora sp. R42004

ncbi_submitter: Institute of Marine and Environmental Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Escherichia coli LT-68

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_country: China: Ningxia

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Klebsiella huaxiensis

ncbi_submitter: Institut Pasteur


ncbi_country: Sweden: Orebro

ncbi_isolation_source: cornea

ncbi_organism_name: Corynebacterium macginleyi

ncbi_submitter: Aarhus University


ncbi_organism_name: Desulfosudis oleivorans Hxd3

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D9_bin-0609

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: BILS


ncbi_country: Germany: Berlin

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_assembly_name: Rumen uncultured genome RUG12672

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Czech Republic

ncbi_isolation_source: soil

ncbi_organism_name: Pedobacter sp. L105

ncbi_submitter: Institute of Microbiology of the AS CR


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC059708

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Blautia sp.


ncbi_organism_name: uncultured Kingella sp.


ncbi_country: Russia

ncbi_isolation_source: spleen

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Flavobacterium sp. H4147

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_strain_identifiers: VIB 18

ncbi_submitter: University of Copenhagen


ncbi_country: USA: San Joaquin County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum;x__Salmonella enterica subsp. enterica serovar Pullorum str. 19945


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Mexico: Morelos

ncbi_isolation_source: Nodule

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: Centro de Ciencias Genomicas, UNAM


ncbi_country: China

ncbi_isolation_source: stool specimen from a Guillain-Barre syndrome patient

ncbi_organism_name: Campylobacter jejuni HB-CJGB-LC

ncbi_strain_identifiers: HB-CJGB-LC

ncbi_submitter: State Key Laboratory for Infectious Disease Prevention and Control, and National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Dalian Polytechnic University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: The University of Queensland


ncbi_assembly_name: freshwater MAG --- Loclat_bin-13254

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Leifsonia sp. EB34

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Colorado


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Serratia sp. CY54781

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY54781


ncbi_organism_name: Candidatus Dormibacteraceae bacterium

ncbi_submitter: Monash University

ncbi_taxonomy: d__Bacteria;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;x__unclassified Candidatus Dormibacteraceae;s__Candidatus Dormibacteraceae bacterium


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_submitter: Penn State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University of British Columbia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolate: AOP34_AQ2_surf _bin _6

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP34_AQ2_surf _bin _6

ncbi_submitter: Genoscope


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: DAPP-PG 308

ncbi_submitter: University of Amsterdam


ncbi_isolate: AOP5_B2_surf _bin _14

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: AOP5_B2_surf _bin _14


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin26

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_strain_identifiers: HIE bin26


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Switzerland

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Texas Tech University


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-0383

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_country: France: Rouen

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Normandie Univ


ncbi_country: Indonesia: Lake Matano

ncbi_isolation_source: water

ncbi_organism_name: Microbacterium sp. 10M-3C3

ncbi_submitter: University of Delaware


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;s__Candidatus Taylorbacteria bacterium RIFCSPLOWO2_12_FULL_49_67


ncbi_country: Canada: Rivire St-Jean; Gasp; Quebec

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_country: USA: MA; Cape Cod National Seashore

ncbi_isolation_source: soil

ncbi_organism_name: Chromobacterium alticapitis

ncbi_submitter: Midwestern University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Laboratory of Infectious Diseases, Kitasato Institute for Life Sciences, Kitasato University


ncbi_country: India: Sikkim

ncbi_isolation_source: Glacier

ncbi_submitter: Sikkim University


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Peptoniphilaceae bacterium


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Mucilaginibacter rubeus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Asaia bogorensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: UZ Gent


ncbi_country: France

ncbi_isolation_source: whey (from Comte)

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_strain_identifiers: CIRM-BIA 929

ncbi_submitter: Brigham Young University


ncbi_organism_name: Staphylococcus aureus T22074

ncbi_submitter: Broad Institute


ncbi_isolation_source: plant

ncbi_organism_name: Frigoribacterium sp. VKM Ac-2836

ncbi_strain_identifiers: VKM Ac-2836

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus sp. HMSC076C08

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Japan: Chichi-jima Island

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudomaricurvus alkylphenolicus

ncbi_submitter: Guangxi University


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Alistipes dispar

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: kimchi

ncbi_organism_name: Weissella cibaria

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Brucella intermedia

ncbi_submitter: CSIR-Indian Institute of Toxicology Research


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Sagittula sp.

ncbi_submitter: Tang lab


ncbi_country: Russia: St.Petersburg

ncbi_organism_name: Listeria innocua

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Slovakia: Samorin

ncbi_isolation_source: mixer for cooked meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Microbispora hainanensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Academia Sinica


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Sulfitobacter guttiformis KCTC 32187

ncbi_submitter: Yonsei University


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GP01-A8

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0663

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Desulfosporosinus nitroreducens

ncbi_submitter: Wageningen University & Research


ncbi_country: Mexico: Mazatlan; Sinaloa

ncbi_isolation_source: domestic wastewater

ncbi_strain_identifiers: Strain 8

ncbi_submitter: Universidad Politecnica de Sinaloa


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: South Korea

ncbi_isolation_source: sea water

ncbi_organism_name: Flavobacterium sp. LPB0248

ncbi_submitter: Korea University


ncbi_country: Poland: Poznan

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Korea: Han River; Seoul

ncbi_isolation_source: freshwater

ncbi_organism_name: Amnimonas aquatica

ncbi_strain_identifiers: HR-E

ncbi_submitter: Chung-Ang University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: East China Normal University


ncbi_country: Germany

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas proteolytica

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Universidad Nacional Andres Bello


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: California

ncbi_isolation_source: Ocean

ncbi_organism_name: Bacteroidales bacterium F22

ncbi_submitter: Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium F22


ncbi_organism_name: Bacillus sp. JJ1474

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JJ1474


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: France

ncbi_isolation_source: Conjunctivitis

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Sphingobacterium faecium

ncbi_submitter: University of Technology Sydney


ncbi_submitter: CHU de Bicetre


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Darwin; Northern Territory

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Menzies School of Health Research


ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_country: Brazil:Santa Catarina; Blumenau

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Prochlorococcus sp. MED-G73

ncbi_submitter: Universidad Miguel Hernandez


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Vienna


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Parasynechococcus sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Methylobacter sp.

ncbi_submitter: EPFL


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Abe hydrothermal plume 200m

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus sp. UMB8487

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_country: USA: Florida

ncbi_organism_name: Staphylococcus saccharolyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Australia

ncbi_isolation_source: Carriage sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sydney


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides caccae


ncbi_country: Uganda: Kampala

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Marian University College


ncbi_organism_name: SAR116 cluster bacterium MED-G04

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium MED-G04


ncbi_submitter: Sichuan University


ncbi_country: Germany: Bavaria

ncbi_isolation_source: bee honey

ncbi_organism_name: Apilactobacillus kunkeei

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: respiratory tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: EBI


ncbi_country: Mayotte

ncbi_isolation_source: water

ncbi_organism_name: Leptospira meyeri

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Czech Republic: Karlovy Vary

ncbi_isolation_source: sulphate-bicarbonate waters

ncbi_organism_name: Paenibacillus sp. P26

ncbi_submitter: University of Chemistry and Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_country: USA: Lechuguilla Cave; New Mexico

ncbi_isolation_source: cave

ncbi_organism_name: Ensifer sp. LC54

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitrincola sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Norway

ncbi_isolation_source: mock community grown in Fraser Broth inoculated with Listeria monocytogenes MF4536; Listeria monocytogenes MF4565; Listeria monocytogenes MF5376; Listeria monocytogenes MF5377; Listeria monocytogenes MF5378; Listeria monocytogenes MF5630; Listeria monocytogenes MF5634; Listeria innocua MF4030; Listeria innocua MF8051; Listeria ivanovii MF2618 (CCUG 37344); Listeria ivanovii MF6987; Listeria welshimeri MF2623 (CCUG 15529); Bacillus cereus group sp. MF8071; Bacillus cereus group sp. MF8072; Enterococcus sp. MF8068; Enterococcus sp. MF5883; Leucobacter sp. MF8070; Pseudomonas sp. MF8056; Pseudomonas sp. MF6692; Pseudomonas sp. MF5529; Serratia rubidaea MF8054; and Staphylococcus sp. MF8063

ncbi_organism_name: Serratia rubidaea

ncbi_submitter: Nofima


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Vogesella fluminis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: paddy soil

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: China: Henan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhengzhou University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Paenibacillus filicis

ncbi_submitter: Sangji University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Ileo-caecum


ncbi_organism_name: Collinsella aerofaciens ATCC 25986

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Australia: Carbrook QLD

ncbi_isolation_source: freshwater

ncbi_organism_name: Anabaenopsis arnoldii

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: Brazil

ncbi_isolation_source: Ration

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Riemerella sp.


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Emergencia timonensis

ncbi_submitter: Nanjing University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Mycoplasmataceae bacterium UBA3729

ncbi_submitter: University of Queensland


ncbi_organism_name: Acidovorax sp. SUPP1855

ncbi_submitter: Shizuoka University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: South Korea: Gyeonggi-do; Pyeongtaek

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_strain_identifiers: WS

ncbi_submitter: National Institute of Fisheries Science


ncbi_country: France: Nantes

ncbi_isolation_source: bone tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Nantes University Hospital


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Hydrogenovibrio sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC052225

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Ethiopia: SNNP; Gurage; Sodo

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Dermacoccus barathri

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_country: Mexico: Morelos; Los Sauces River

ncbi_isolation_source: river water

ncbi_organism_name: Stenotrophomonas sp. SAU14A_NAIMI4_5

ncbi_submitter: Centro de Ciencias Genomicas - UNAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Stenotrophomonas;x__Stenotrophomonas maltophilia group;x__unclassified Stenotrophomonas maltophilia group;s__Stenotrophomonas sp. SAU14A_NAIMI4_5


ncbi_country: Canada: Saskatchewan


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Icahn School of Medicine


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: Duncaniella freteri


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Isolate 02;Patient 01

ncbi_submitter: University of Pittsburgh


ncbi_country: Japan

ncbi_isolation_source: stool

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: Serbia: Futog

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: SAHMRI


ncbi_country: USA: MO

ncbi_isolation_source: granny smith apple

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_country: Spain: Asturias

ncbi_submitter: University of Oviedo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_organism_name: Sediminicola sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: UIUC


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Xanthomonas axonopodis pv. vasculorum

ncbi_strain_identifiers: LMG 901

ncbi_submitter: UNIVERSITY OF HAWAII AT MANOA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas axonopodis;x__Xanthomonas axonopodis subcluster 9.3;x__Xanthomonas axonopodis pv. vasculorum


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolate: AOP35_05H_surf _bin _22

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP35_05H_surf _bin _22

ncbi_submitter: Genoscope


ncbi_organism_name: Turicibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterococcus canintestini

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: EMG


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Veillonella sp.


ncbi_organism_name: Erwinia rhapontici

ncbi_submitter: Graduate School of Engineering, Department of Material and Environmental Chemistry, Utsunomiya University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: SponGES


ncbi_assembly_name: Rumen uncultured genome RUG10980

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0137

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of California San Diego


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Blautia faecis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Anaerosomatales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Ohio Columbus

ncbi_isolation_source: ear

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_country: China: Henan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Ireland

ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: FDA/CFSAN


ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_organism_name: Clostridium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Aerococcus christensenii


ncbi_country: France

ncbi_isolation_source: reactal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Xi hu lake; Yunnan province

ncbi_isolation_source: fresh water

ncbi_organism_name: Chryseobacterium lacus

ncbi_submitter: Shandong University


ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: University of Victoria


ncbi_organism_name: Candidatus Sericytochromatia bacterium

ncbi_submitter: CSIR-Centre for Cellular and Molecular Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__unclassified Candidatus Sericytochromatia;s__Candidatus Sericytochromatia bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium RBG_16_48_16


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_country: India

ncbi_isolation_source: Insect gut

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: NSS

ncbi_submitter: Visva-Bharati University


ncbi_country: Japan

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_country: China: Shanxi

ncbi_isolation_source: moderately salinized soil

ncbi_organism_name: Sinomicrobium weinanense

ncbi_strain_identifiers: FJxs

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Isolate 29

ncbi_submitter: University of Siena


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Denmark

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Microbacterium sp. AK031

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Rhodococcus erythropolis XP

ncbi_strain_identifiers: XP

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Escherichia coli O26

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Mauritius


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Xanthomonas hortorum pv. taraxaci

ncbi_strain_identifiers: NCPPB 940

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_country: Bolivia: La Paz

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Janthinobacterium sp. CG23_2

ncbi_submitter: National Center for Genome Resources (NCGR)


ncbi_country: Netherlands

ncbi_isolation_source: Kaanga Wai

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Radboudumc


ncbi_country: Peru

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR5887

ncbi_submitter: Broad Institute


ncbi_isolate: metabat2_coassembly_bwa.601 MAG

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.601 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprobacillus sp.

ncbi_submitter: EMG


ncbi_country: USA: Bethesda

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: WN-I

ncbi_submitter: Yunnan agricultural university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Spain: Asturias

ncbi_organism_name: Intrasporangium sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella sp. G21-3207

ncbi_submitter: Jeonbuk National University Hospital


ncbi_country: Italy: Lodi

ncbi_isolation_source: Bacteriophage Insensitive Mutant of strain ATCC 10386

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Consiglio per la Ricerca e la Sperimentazione in Agricoltura


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lacticaseibacillus salsurivasis

ncbi_submitter: Northeast Agricultural University


ncbi_submitter: Colorado State University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Vibrio cholerae

ncbi_strain_identifiers: classical A103

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces sp. NPDC059611

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces sp. NPDC057638


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: INRA


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Korea: Seoul

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: Yonsei University


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolate: AOP36_B1_surf _bin _34

ncbi_organism_name: Alkalibacterium gilvum

ncbi_strain_identifiers: AOP36_B1_surf _bin _34

ncbi_submitter: Genoscope


ncbi_country: Antarctica: Robinson Ridge

ncbi_isolation_source: pooled data from three different soil samples

ncbi_organism_name: Candidatus Dormiibacter spiritus

ncbi_submitter: nstitute of Tibetan Plateau Research, Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;g__Candidatus Dormiibacter;s__Candidatus Dormiibacter spiritus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;g__Candidatus Dormiibacter;s__Candidatus Dormiibacter spiritus


ncbi_country: Poland

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Chlamydia abortus

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE


ncbi_country: India

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: CRN 17

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Limosilactobacillus mucosae


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 155

ncbi_submitter: Oregon State University


ncbi_organism_name: Rhizobium rhizogenes


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: Nanjing University


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University School of Medicine


ncbi_country: Serbia

ncbi_isolation_source: butter starter

ncbi_submitter: Faculty of Pharmacy, Belgrade University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis;sb__Lactococcus lactis subsp. lactis;x__Lactococcus lactis subsp. lactis bv. diacetylactis


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Life Sciences in Lublin


ncbi_country: USA: NY

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Bern


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: PA

ncbi_isolation_source: feces


ncbi_country: Bolivia: Puente Lipari; La Paz

ncbi_isolation_source: Choqueyapu River

ncbi_submitter: University of Gothenburg


ncbi_assembly_name: Rumen uncultured genome RUG10090

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halorhodospira sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Russia: Krasnodar Krai; Gladkovsky mud volcano

ncbi_isolation_source: pool on the surface of a mud volcano

ncbi_organism_name: Desulfobulbales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: chronic granulomatous disease patient at the NIH clinical center in Bethesda; MD; USA

ncbi_organism_name: Burkholderia multivorans CGD1

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EBI


ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: Mozambique

ncbi_organism_name: Mycolicibacterium mucogenicum

ncbi_submitter: JCVI


ncbi_organism_name: Sphingomonas sp. 32-62-10


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Stenotrophomonas indicatrix


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: China

ncbi_isolation_source: coastal sediment

ncbi_organism_name: Zobellella denitrificans

ncbi_submitter: The Third Institute of State Oceanic Administration


ncbi_country: China: Hebei; Hengshui; Hengshui Lake

ncbi_isolation_source: lake water

ncbi_organism_name: Paracoccus benzoatiresistens

ncbi_submitter: Shandong University of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: INSTITUTO NACIONAL DE SALUD


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Malaysia

ncbi_isolation_source: sputum of a patient with lung infections

ncbi_organism_name: Mycobacteroides abscessus M93

ncbi_submitter: Faculty of Dentistry, Universiti Malaya, Kuala Lumpur


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: EMG


ncbi_country: Canada: Little Fort; British Columbia

ncbi_isolation_source: lichen thallus

ncbi_submitter: University of Iceland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;x__Nostoc cyanobionts;s__Nostoc sp. 'Peltigera malacea cyanobiont' DB3992


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: feces

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Control Grass (No Manure)

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: GC T1 SC CEF 4

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: Armenia

ncbi_isolation_source: Urinary tract

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: university of west london


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: P3 CL A35

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Queensland


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universiteit Antwerpen


ncbi_country: Ireland

ncbi_isolation_source: Supermarket/Cottage cheese

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;s__Candidatus Nealsonbacteria bacterium RIFCSPHIGHO2_01_FULL_38_55


ncbi_organism_name: Halomonas sp. H10-59

ncbi_submitter: Ocean University of China


ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas sp. UBA3238


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_assembly_name: Rumen uncultured genome RUG10246

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Chlamydia trachomatis

ncbi_strain_identifiers: KANU:L2 CT036::Tn

ncbi_submitter: University of Kansas


ncbi_organism_name: uncultured Niameybacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Halifax

ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_strain_identifiers: IBS

ncbi_submitter: University of Pavia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;x__unclassified Candidatus Midichloriaceae;s__Candidatus Midichloriaceae bacterium IBS


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University