ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


gtdb_representative: f

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_assembly_level: Scaffold

ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Syntrophaceae bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Sphingobium sp. ZW T5_29

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Treponema socranskii subsp. buccale

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: Deciduous woodland; University campus

ncbi_organism_name: bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Selenomonadales bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Shuttleworthella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Malaysia: Segamat

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Monash University Malaysia


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 158 (4-3224287)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 158 (4-3224287)


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway

ncbi_isolation_source: salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Halomonas elongata

ncbi_submitter: Indian Agricultural Research Institute, New Delhi


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Institute for Agricultural and Fisheries and Food Research (ILVO)


ncbi_country: Australia: NSW

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


gtdb_type_species_of_genus: t

ncbi_organism_name: Chromobacterium violaceum

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Spain: Mallorca

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: University of Balearic Islands


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_submitter: Mahidol University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_organism_name: Candidatus Phocaeicola faecigallinarum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: Aarhus University


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Leptospirales bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: BGI


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Shanghai

ncbi_submitter: China Aricultural University


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany

ncbi_organism_name: Chlamydia psittaci 02DC15

ncbi_submitter: University of Maryland School of Medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Singulisphaera sp. GP187

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: NHS Scotland

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Bangladesh

ncbi_isolation_source: feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: KARMA

ncbi_isolate: KarMa

ncbi_isolation_source: Co-cultivation with the diatom Phaeodactylum tricornutum strain UTEX 646

ncbi_organism_name: Donghicola eburneus

ncbi_strain_identifiers: KarMa

ncbi_submitter: CEBITEC


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola dorei


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Streptomyces sp. BF23-30

ncbi_submitter: SciBear OU


ncbi_organism_name: Phaeobacter italicus

ncbi_submitter: Plant Environmental Microbiology Group, Institute of Plant Science and Resources, Okayama University


ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: King Abdulaziz University


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: USA: NY

ncbi_isolation_source: bloodstream of an adult FeMale ICU patient

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_assembly_level: Chromosome

ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0604

ncbi_submitter: Texas A&M University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Viet Nam

ncbi_isolation_source: chicken

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_assembly_name: Rumen uncultured genome RUG12517

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Halomonas sp. ISL-56

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: France: Lyon

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Claude Bernard Lyon 1


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Colombia: Bogota

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolate: MAG 151

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: SAR324 cluster bacterium

ncbi_strain_identifiers: MAG 151

ncbi_submitter: WHOI

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: fish gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Beckwithiibacteriota;s__Candidatus Beckwithbacteria bacterium RIFCSPLOWO2_01_FULL_49_47


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Patiriisocius sp. Uisw_017

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: IFSC USP


ncbi_organism_name: Candidatus Aminicenantales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;x__unclassified Candidatus Aminicenantales;s__Candidatus Aminicenantales bacterium


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Iowa State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Muribaculum sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Sulfurimonas sp.


ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Ilumatobacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Greece: Cyclades; Mykonos

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: Murdoch University


ncbi_country: Taiwan

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: EMG


ncbi_country: Canada: Ontario

ncbi_isolation_source: food processing

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 3c;x__Listeria monocytogenes serotype 3c str. 10-5027


ncbi_assembly_name: Phaeobacter sp. 11ANDIMAR09

ncbi_country: Spain: Andratx Harbor; Mallorca Island; Balearic Islands

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Phaeobacter sp. 11ANDIMAR09

ncbi_submitter: Univesitat de les Illes Balears (UIB)


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: uncultured Actinotalea sp.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: Denmark

ncbi_isolation_source: Krokodille Zoo

ncbi_organism_name: Pasteurellaceae bacterium Phil11

ncbi_submitter: University of Copenhagen


ncbi_country: France

ncbi_isolation_source: cecal content

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: Longimicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: BEI Resources


ncbi_organism_name: Arthrobacter bambusae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Montreal

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Australia

ncbi_isolation_source: Casey Hospital

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia: Ulupna; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom:Northern Ireland

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China

ncbi_isolation_source: rhizosphere of green pepper

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: Qilu University of Technology


ncbi_isolation_source: sediment

ncbi_organism_name: Nitratireductor sp. DP7N14-4

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Klebsiella sp. CN_Kp105

ncbi_submitter: Max Rubner-Institut


ncbi_country: China: Shan Wei

ncbi_isolation_source: shrimp pool

ncbi_organism_name: Pseudoalteromonas sp. G4

ncbi_submitter: Shenzhen Institute of Advanced Technology,Chinese Academy of Sciences


ncbi_country: USA: Alabama; Tuscaloosa

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Auburn University


ncbi_organism_name: uncultured Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: Streptosporangium sp. NPDC020145

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Fannyhessea vaginae


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Ningxia University


ncbi_country: Spain

ncbi_organism_name: Pseudalkalibacillus decolorationis

ncbi_refseq_category: reference genome

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli MP021561.2

ncbi_submitter: IGS


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2582580728 annotated assembly

ncbi_organism_name: Lacicoccus alkaliphilus DSM 16010

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Salinicoccaceae;g__Lacicoccus;s__Lacicoccus alkaliphilus;x__Lacicoccus alkaliphilus DSM 16010


ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Guizhou; Jiuan

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycobacterium canetti

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Eubacterium callanderi

ncbi_submitter: EMG


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Oregon State University


ncbi_isolation_source: Caecum


ncbi_country: South Korea

ncbi_isolation_source: Porcine feces

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Seoul National University


ncbi_assembly_name: Escherichia coli CVM N33591PS v1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N33591PS

ncbi_submitter: FDA


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Argentina

ncbi_isolation_source: urine

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_organism_name: Photorhabdus laumondii subsp. laumondii

ncbi_strain_identifiers: DJC

ncbi_submitter: Max-Planck-Institute of Biochemistry


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: rat gut

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: IMG-taxon 2706794919 annotated assembly

ncbi_organism_name: Belliella buryatensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Staphylococcus aureus T63898

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Brachymonas sp. M4Q-1

ncbi_submitter: Institute of Hydrobiology


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Masaryk University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Clostridium eludens

ncbi_strain_identifiers: WILCCON 0269

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Streptomyces globisporus


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Minnesota


ncbi_organism_name: Nocardia fluminea


ncbi_assembly_name: freshwater MAG --- LJ_bin-2554

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Aceula meridiana

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Aceula;s__Candidatus Aceula meridiana

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Aceula;s__Candidatus Aceula meridiana


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Coprothermobacterota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_country: USA: Roseburg

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Colwellia sp. 5_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: South Korea: Yongyu-do

ncbi_isolation_source: Salt flat

ncbi_organism_name: Novosphingobium aureum

ncbi_submitter: Korea University


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Dialister invisus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: cervical

ncbi_organism_name: Staphylococcus sp. HMSC063F03

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6527

ncbi_submitter: Ministry of Science and Technology of China


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Niger

ncbi_submitter: Cardiff University


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: soil cultivated with Citrus species

ncbi_organism_name: Dyella terrae

ncbi_submitter: Sun Yat-sen University


ncbi_country: Australia: NSW

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Duke University


ncbi_country: Taiwan

ncbi_isolation_source: Sputum; children 3 to 6 years

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Komagataeibacter swingsii DSM 16373

ncbi_submitter: Tokyo University of Agriculture


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Lake Windermere

ncbi_organism_name: Synechococcus sp. CCAP 1479/10

ncbi_submitter: University of Bristol


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: USA

ncbi_isolation_source: nasal

ncbi_submitter: Johns Hopkins Bloomberg School of Public Health


ncbi_organism_name: Paenarthrobacter nicotinovorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: digestive tract (UBERON:0001555); intestine (UBERON:0000160)

ncbi_organism_name: Porphyromonadaceae bacterium UBA3410

ncbi_submitter: University of Queensland


ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M1333

ncbi_submitter: Broad Institute


ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus ATCC 51811


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Umbilicus swab

ncbi_organism_name: Dermabacter hominis

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Klebsiella sp. CB_Kp195

ncbi_submitter: Max Rubner-Institut


ncbi_country: China: Jilin

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_organism_name: Neisseria gonorrhoeae DGI18


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Proteocatella sp.

ncbi_submitter: Nanyang Technological University


ncbi_country: Brazil

ncbi_isolation_source: oral cavity; infant (15 months age)

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: State University of Campinas


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Korea: Goheung

ncbi_isolation_source: rice paddy soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD15430


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_assembly_name: IMG-taxon 2609459643 annotated assembly

ncbi_organism_name: Janthinobacterium sp. OK676

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_02_FULL_43_13b


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: IMG-taxon 2693429874 annotated assembly

ncbi_organism_name: Olleya namhaensis


ncbi_country: USA: Cincinatti

ncbi_isolation_source: abscess

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Italy

ncbi_isolation_source: swab

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Prevotella brunnea

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Instituto Nacional de Salud Publica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_isolation_source: cystic fibrosis sputum

ncbi_organism_name: Achromobacter ruhlandii


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: TN

ncbi_isolation_source: Ground Beef

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_genome_category: derived from single cell

ncbi_isolate: CCCryo 231-06

ncbi_isolation_source: single-cells amplified by MDA from Martian and Lunar regolith analogues; BG-11 medium

ncbi_organism_name: Nostoc sp. CCCryo 231-06

ncbi_strain_identifiers: CCCryo 231-06

ncbi_submitter: Mayo Clinic

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;s__Nostoc sp. CCCryo 231-06


ncbi_country: South Korea

ncbi_organism_name: Escherichia coli O157 str. NCCP15739

ncbi_submitter: Korea National Institute of Health, Korea Centers for Disease Control & Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157;x__Escherichia coli O157 str. NCCP15739


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_assembly_name: Streptomyces sp. FXJ7.023

ncbi_country: China

ncbi_organism_name: Streptomyces sp. FXJ7.023

ncbi_submitter: state Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Kalamazoo County; MI

ncbi_isolation_source: Gull Lake

ncbi_organism_name: Microcystis aeruginosa G13-11

ncbi_submitter: University of Michigan


ncbi_country: Trinidad and Tobago: Trinidad

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas melonis

ncbi_submitter: The University of The West Indies, St. Augustine


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus cereus group sp. BceL156

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL156


ncbi_organism_name: Pseudomonas sp. zjy_15

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC096048

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sphingobacterium cellulitidis

ncbi_submitter: Amager and Hvidovre Hospital


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Hyphomicrobium sp. 1Nfss2.1

ncbi_submitter: Genoscope CEA


ncbi_organism_name: uncultured Syntrophaceae bacterium


ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_isolation_source: gut metagenome


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Collinsella sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: Spain: Asturias

ncbi_organism_name: Acidipropionibacterium jensenii

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Brazil

ncbi_isolation_source: vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: UFMG


ncbi_country: USA: Colorado; Idaho Springs; Argo tunnel

ncbi_isolation_source: 15% reads came from bioreactor metagenome SAMN04151528 and 85% came from mine drainage metagenome SAMN04151554

ncbi_organism_name: Acidimicrobiaceae bacterium RAAP-2

ncbi_submitter: Colorado School of Mines


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Region Zealand


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ABFRC

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolate: YS river water

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bifidobacterium sp.


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The First Affiliated Hospital of Medical College, Zhejiang University


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: Chile: Valparaiso Region

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Proteobacteria bacterium UBA2545

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA2545


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Turkey: Sanliurfa

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hatay Mustafa Kemal University, Faculty of Veterinary Medicine


ncbi_organism_name: Vibrio sp. 1579

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolate: blood

ncbi_strain_identifiers: blood

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_submitter: JCVI


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Neisseria sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: PREPARE (Platform foR European Preparedness Against (Re-)Emerging Epidemics, EU-FP7, # 602525


ncbi_assembly_name: freshwater MAG --- MJ110927A_bin-531

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: Singapore: Singapore

ncbi_isolation_source: Milk water facet 2A

ncbi_organism_name: Phytobacter diazotrophicus

ncbi_submitter: Tan Tock Seng Hospital


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli O157:H7 str. TW14359

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. TW14359


ncbi_organism_name: Capnocytophaga granulosa

ncbi_submitter: EMG


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Streptomyces doebereineriae

ncbi_submitter: Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_country: Arctic Ocean: Canada Basin

ncbi_isolation_source: sea ice

ncbi_organism_name: Marinomonas sp. BSi20414

ncbi_submitter: Polar Research Institute of China


ncbi_country: Denmark

ncbi_isolation_source: Sputum (Cystic Fibrosis Patient)

ncbi_organism_name: Pandoraea apista

ncbi_submitter: University of Malaya


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Washington University Genome Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;x__unclassified Actinomyces;s__Actinomyces sp. oral taxon 171;x__Actinomyces sp. oral taxon 171 str. F0337


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0090R

ncbi_submitter: Broad Institute


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_country: China

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Gansu Institute of Business and Technology


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Australia

ncbi_isolation_source: supragingival plaque isolated from 88 juvenile twins

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Liaoning

ncbi_isolation_source: chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Texcoconibacillus texcoconensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Flavobacterium undicola

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_country: New Zealand

ncbi_isolation_source: cheese starter

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: CIRM-BIA 87

ncbi_submitter: Brigham Young University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1461


ncbi_assembly_name: freshwater MAG --- AM-2014-D4_bin-034

ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium sp. UBA7556

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; PA

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Pseudobutyrivibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Actinomadura luteofluorescens

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01309

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01309


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Melbourne

ncbi_isolation_source: environmental

ncbi_organism_name: Paenarthrobacter nitroguajacolicus

ncbi_submitter: University of Melbourne


ncbi_assembly_name: Rumen uncultured genome RUG14659

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Pontibacter sp. H259

ncbi_submitter: Hankyong National University


ncbi_country: USA

ncbi_organism_name: Escherichia coli PA23

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Ocean University of China


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom

ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_country: Italy: Ancona

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Mycolicibacterium doricum

ncbi_submitter: Uppsala University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Teagasc


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 3001

ncbi_submitter: Ghent University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Texas A&M University


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Bifidobacterium asteroides

ncbi_submitter: Sichuan University


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Oklahoma


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pontiella sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: Rumen uncultured genome RUG12932

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacteriaceae bacterium


ncbi_organism_name: Paraglaciecola arctica BSs20135

ncbi_submitter: Shandong University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Dongduk Women's University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: DTU Bioinformatics


ncbi_country: USA: DE

ncbi_organism_name: Enterococcus faecalis EnGen0252

ncbi_submitter: Broad Institute


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-2483

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: EMG


ncbi_country: USA: MO

ncbi_isolation_source: stool sample of individual with bacteremia

ncbi_organism_name: Streptococcus agalactiae MC634

ncbi_submitter: The Genome Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Rhodobacter sp. TJ_12

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22523;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Zhejiang University


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: Clinical

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lausanne University Hospital


ncbi_country: USA: California; Middletown

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Salmonella sp. SKLX104978

ncbi_submitter: Zhejiang university


ncbi_organism_name: Caldilineales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yonathiibacteriota;s__Candidatus Yonathbacteria bacterium RIFOXYC2_FULL_47_9


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 3

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: University of Wyoming


ncbi_country: Australia: Brisbane

ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: The University of Queensland


ncbi_country: South Africa: Westen Cape

ncbi_isolation_source: Paediatrics (haematology)

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China: Qinzhou

ncbi_isolation_source: soil

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: College of Agriculture, Guangxi University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Sinobacteraceae bacterium UBA5061

ncbi_submitter: University of Queensland


ncbi_organism_name: Xanthobacter sp. VNH20

ncbi_submitter: Kyonggi university


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: INRA


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of California Riverside


ncbi_organism_name: Gaiellaceae bacterium


ncbi_organism_name: Pseudomonas grimontii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Sporomusaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Ontonagon; Michigan

ncbi_isolation_source: campsite water hose

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia

ncbi_isolate: Faeces

ncbi_isolation_source: phylogroupE

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Prevotella nigrescens

ncbi_submitter: EMG


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Microbacterium sp. SL75

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: RIVM


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Bacteroides pyogenes

ncbi_submitter: University of Calgary


ncbi_submitter: University of California Berkeley


ncbi_country: Greece

ncbi_isolation_source: biological sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, University of Thessaly


ncbi_organism_name: Microbulbifer sp. TYP-18

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Helicobacter hepaticus ATCC 51449


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_isolation_source: Cecum

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: China: anhui

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Oregon State University


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Candidatus Merdousia sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;f__Intestinicryptomonaceae;g__Candidatus Merdousia;x__unclassified Candidatus Merdousia;s__Candidatus Merdousia sp.


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Poseidonibacter sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Ilyobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat sen University


ncbi_organism_name: Deinococcus sp. A31D244

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: uncultured Gemmatimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-0574

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Ahniellaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Green_T_3

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Universite de Sherbrooke


ncbi_isolate: AOP35_02H_surf _bin _10

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP35_02H_surf _bin _10

ncbi_submitter: Genoscope


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_country: Belgium

ncbi_isolation_source: Vitamin B2 food additive

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Sciensano


ncbi_isolation_source: swine facility

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 995

ncbi_submitter: USDA-ARS


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 15

ncbi_submitter: Oregon State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Nevers

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter sp. CIP 101966

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Cycloclasticus sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: MS

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus aureus DAR3769


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: United Kingdom: Stratford-upon-Avon

ncbi_isolation_source: Cooling tower water

ncbi_organism_name: Legionella shakespearei DSM 23087

ncbi_submitter: Tel Aviv University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W46883


ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus

ncbi_submitter: BGI


ncbi_isolation_source: ROAR

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: lake water

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shanghai

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Balneolaceae bacterium UBA2665

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__unclassified Balneolaceae;s__Balneolaceae bacterium UBA2665


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: Cane juice

ncbi_organism_name: Leuconostoc pseudomesenteroides KCTC 3652

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Dialister invisus

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Treponema denticola

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus acidipiscis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 91 - depth 500m

ncbi_organism_name: Marinobacter sp. REDSEA-S21_B2N3

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA: Key West; Florida

ncbi_isolation_source: Lung tissue

ncbi_organism_name: Legionella bozemanae

ncbi_strain_identifiers: WIGA

ncbi_submitter: Tel Aviv University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Ophion costatus


ncbi_assembly_name: IMG-taxon 2721755846 annotated assembly

ncbi_organism_name: Streptomyces sp. OK228

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: Caecum

ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: uncultured Capnocytophaga sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_country: Japan:Hyogo; Sasayama

ncbi_isolation_source: Root nodules

ncbi_organism_name: Bradyrhizobium sp. SSBR45G

ncbi_submitter: Ryukoku University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Micromonospora humida

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Qingdao Agricultural Universtiy


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacteroides xylanisolvens CL03T12C04

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: United Kingdom

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Xylanibacter rarus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Assembly 1

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: LISBP


ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: USA: Bar Harbor; ME MDIBL

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: University of New Hampshire

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: China

ncbi_isolation_source: chicken cloaca

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: College of Veterinary Medicine


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Patient4 sputum

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Microbacteriaceae bacterium


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Moviscom srl


ncbi_country: Hong Kong

ncbi_isolation_source: activated sludge

ncbi_organism_name: Arthrobacter sp. M5

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Morganella morganii

ncbi_submitter: Yangzhou university


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Dialister hominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidimicrobiia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: cold seep

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: University of Alberta


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_assembly_name: freshwater MAG --- Umea2_bin-0600

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Brazil

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Clostridium sp. Marseille-P2415

ncbi_submitter: URMITE


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Israel

ncbi_isolation_source: raw cow s milk

ncbi_organism_name: Epilithonimonas lactis

ncbi_submitter: GCAT-SEEK


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolate: metabat2_XCR1_HET_7867_bwa.85 MAG

ncbi_organism_name: Enterococcus cecorum

ncbi_strain_identifiers: metabat2_XCR1_HET_7867_bwa.85 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: intestine

ncbi_organism_name: Acinetobacter sp. 256-1

ncbi_submitter: City University of Hong Kong


ncbi_country: China: Beijing

ncbi_isolation_source: sediment inoculated into enrichment culture with sulfur

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: skin of a horse

ncbi_organism_name: Macrococcus brunensis

ncbi_submitter: University of Bern


ncbi_country: USA: Georgia;Atlanta

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_country: Greece: Crete

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Liverpool


ncbi_organism_name: Limimaricola sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Staphylococcus felis

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: USA: NY

ncbi_isolation_source: environment soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany: Rostock

ncbi_isolation_source: root

ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: Graz University of Technology


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Jiangsu Academy of Agricultural Sciences (JAAS)


ncbi_country: USA: St. Louis

ncbi_isolation_source: Endovascular

ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Sweden

ncbi_isolation_source: bovine milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: Psychrobacter nivimaris 88-2-7

ncbi_isolation_source: sea water

ncbi_organism_name: Psychrobacter nivimaris

ncbi_strain_identifiers: Psychrobacter nivimaris 88-2-7

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Fluoribacter gormanii

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Mycobacterium timonense

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: LMU Munich


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: The University of Texas at San Antonio


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_country: Pakistan: Faisalabad; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. F_12

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Enterococcus sp. AZ108

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail fresh oregano

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: Italy

ncbi_isolation_source: Restaurant

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_isolation_source: patients

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Dialister pneumosintes

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudarthrobacter sp. J47

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Dermacoccus sp. SAI-028

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Syntrophothermus sp. DTU052

ncbi_submitter: Technical University of Denmark


ncbi_country: South Africa:Stellenbosch

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Pacific Ocean

ncbi_isolation_source: 300 m depth seawater

ncbi_organism_name: Vreelandella aquamarina

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: Russia: Chelyabinsk (import from Tunisia)

ncbi_isolation_source: patient

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Research Institute for Plague Control


ncbi_country: China: Jiangsu

ncbi_submitter: China Agricultural University


ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: EMG


ncbi_country: Israel: Palmahim disturbance; hydrocarbon seep

ncbi_isolate: Palmahim 3

ncbi_isolation_source: trophosome

ncbi_strain_identifiers: Palmahim 3

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium endosymbiont of Lamellibrachia anaximandri


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Lanzhou Veterinary Research Institute


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: annelid root tissue scrapped from turkey femur surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Neptunomonas sp.

ncbi_submitter: ProBone


ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: terrestrial

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Queensland


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Jiangsu; Yi Xing

ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus sp. YL-0

ncbi_submitter: NJAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. YL-0


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5469

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5469


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KP B353

ncbi_submitter: University College Dublin


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Australia: Adelaide Hills; SA

ncbi_organism_name: Alistipes sp.


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: PA

ncbi_isolation_source: porcine pig milk

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa23

ncbi_submitter: King Abdullah University Science and Technology


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_assembly_name: freshwater MAG --- YR_bin-5043

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Streptomyces sp. NRRL WC-3626

ncbi_strain_identifiers: NRRL WC-3626

ncbi_submitter: University of Illinois


ncbi_country: Germany

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Robert Koch Institute


ncbi_country: Italy

ncbi_isolation_source: Peritoneal exudate

ncbi_organism_name: Psychrobacter raelei

ncbi_submitter: University of Bari


ncbi_country: China: Shenzhen

ncbi_organism_name: Enterobacter mori

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: South Korea: llsan

ncbi_isolation_source: water

ncbi_organism_name: Roseateles albus

ncbi_submitter: Dongguk University


ncbi_country: USA

ncbi_isolation_source: cystic fibrosis sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Corynebacterium variabile

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rhodanobacter ginsenosidimutans

ncbi_strain_identifiers: Gsoil 3054

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG