ncbi_assembly_name: freshwater MAG --- VK4_bin-1216

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: USA: Hickory Corners; MI

ncbi_genome_representation: full

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. KBS0707

ncbi_submitter: Indiana University


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Pseudohongiella sp.

ncbi_submitter: Universite Laval


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus hominis


ncbi_country: Estonia

ncbi_isolation_source: milk

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: University of Tokyo, Graduate School of Frontier Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum;sb__Bifidobacterium longum subsp. infantis;x__Bifidobacterium longum subsp. infantis 157F


ncbi_country: Colombia

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_assembly_level: Chromosome

ncbi_country: Russia: Moscow

ncbi_submitter: Skoltech

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar andalousiensis


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_country: Tunisia

ncbi_organism_name: Sinorhizobium numidicum

ncbi_refseq_category: reference genome

ncbi_submitter: Queen's University

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_submitter: Monash University


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_submitter: NanJing University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Antarctica: Robinson Ridge

ncbi_organism_name: Streptomyces sp. INR7

ncbi_submitter: University of New South Wales


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2667527380 annotated assembly

ncbi_organism_name: Microbulbifer marinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: terrestrial

ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence and no molasses

ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__environmental samples;s__uncultured Candidatus Actinomarinales bacterium


ncbi_organism_name: Campylobacter coli RM2228

ncbi_submitter: TIGR


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Cellulomonas wangsupingiae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Clostridiales bacterium VE202-01

ncbi_submitter: The University of Tokyo


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Lonchoptera lutea


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Streptomyces sp. NPDC094437

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: oral cavity - mouth

ncbi_organism_name: Rothia aeria F0184

ncbi_submitter: Washington University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Vampirovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Hyphococcus aureus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Desulfovermiculus sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Zhejiang university


ncbi_organism_name: Candidatus Enterosoma sp.

ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Enterosoma;x__unclassified Candidatus Enterosoma;s__Candidatus Enterosoma sp.


ncbi_organism_name: Liquorilactobacillus hordei

ncbi_submitter: Teagasc


ncbi_organism_name: Massilia sp. TSP1-1-2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_organism_name: Streptococcus sp. A25

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Salmonella sp. C3272

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces misionensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Yantai Center for Disease Control and Prevention


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Acidimicrobiia bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acetobacter oryzifermentans

ncbi_submitter: Gangwon State Agricultural research &Extension Services Gangwon State Agricultural research &Extensi


ncbi_country: USA: California; Modesto

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


gtdb_type_species_of_genus: t

ncbi_isolation_source: not available: not collected

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: N


ncbi_organism_name: Bacillus altitudinis


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Chlamydia trachomatis L2b/Ams3

ncbi_submitter: Sanger Institute


ncbi_country: Kazakhstan: West-Kazakhstan

ncbi_isolation_source: tissue

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_country: Australia: Glen Aplin; Queensland

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. australasiaticum


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp H-41

ncbi_strain_identifiers: Hp H-41

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: China: Linyi

ncbi_isolation_source: root endophyte

ncbi_organism_name: Stenotrophomonas sp. GbtcB23

ncbi_submitter: Central South University


ncbi_organism_name: Scytonema sp. PMC 1070.18

ncbi_submitter: National Museum of Natural History - Paris


ncbi_assembly_name: Typhimurium 69M

ncbi_country: Poland: Mazowia

ncbi_isolation_source: milk

ncbi_submitter: Warsaw University of Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Gordonia sp. UBA6683

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. UBA6683


ncbi_assembly_name: IMG-taxon 2663762753 annotated assembly

ncbi_organism_name: Cryobacterium flavum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Herd 119

ncbi_organism_name: Staphylococcus succinus

ncbi_strain_identifiers: SNUC 1544

ncbi_submitter: University of Calgary


ncbi_organism_name: Parcubacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Senegalimassilia sp.

ncbi_submitter: EMG


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: France

ncbi_isolation_source: Minced meat

ncbi_submitter: Anses


ncbi_country: China: Malan

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: BGI-Qingdao


ncbi_country: USA: MD

ncbi_isolation_source: raw cut vegetable

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Citrobacter sp. FR21SANT8218

ncbi_submitter: Saint-Louis Hospital


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Technical university of Denmark


ncbi_organism_name: Candidatus Sedimenticola sp. 6PFRAG1

ncbi_submitter: University of Vienna


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium GW2011_GWB1_37_8


ncbi_organism_name: Yersinia pestis 2330

ncbi_submitter: Beijing Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 2330


ncbi_organism_name: Phocaeicola dorei


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coriobacteriaceae bacterium AM37-10BHA

ncbi_submitter: BGI-Shenzhen


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Malaysia

ncbi_isolation_source: meat

ncbi_submitter: University of Texas at San Antonio


ncbi_organism_name: Streptomyces albogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: FL

ncbi_isolation_source: fecal calf

ncbi_submitter: US Food and Drug Administration


ncbi_assembly_name: IMG-taxon 2675903214 annotated assembly

ncbi_organism_name: Phocoenobacter skyensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Weihai

ncbi_isolation_source: offshore sediment

ncbi_organism_name: Loktanella sp. F6476L

ncbi_submitter: Shandong University,Weihai


ncbi_organism_name: Clostridium diolis

ncbi_submitter: MACS Agharkar Research Institute, Pune (MS) India


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Neobacillus fumarioli NBRC 102428

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Neobacillus;s__Neobacillus fumarioli;x__Neobacillus fumarioli NBRC 102428


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Loam soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Bath


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Germany

ncbi_isolation_source: feces from healthy individual

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: Egypt: Tanta

ncbi_submitter: JCVI


ncbi_isolation_source: Human feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Candidatus Fermentibacter danicus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Fankou; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: South china normal university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Victivallaceae bacterium

ncbi_submitter: EMG


ncbi_country: Ireland

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: USA

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Aestuariivirga sp.

ncbi_submitter: Universite de Montreal


ncbi_country: India: Kolkata

ncbi_isolation_source: rectal swab

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tui Malila hydrothermal plume 10m

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Italy

ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: Candidatus Fervidibacter japonicus

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology

ncbi_taxonomy: d__Bacteria;p__Candidatus Fervidibacterota;c__;o__;f__;g__Candidatus Fervidibacter;s__Candidatus Fervidibacter japonicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;s__Candidatus Fervidibacter japonicus


ncbi_country: USA: Cambridge; MA; MIT

ncbi_organism_name: Helicobacter sp. 10-6591

ncbi_submitter: MIT


ncbi_country: Sweden: Gothenborg

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: South Korea

ncbi_isolation_source: water

ncbi_organism_name: Sphingorhabdus pulchriflava

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_country: Switzerland

ncbi_isolation_source: Nasopharynx


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Prescottella equi

ncbi_submitter: The University of Sydney


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2024EL-00243


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Phenylobacterium conjunctum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolate: AOP33_4_coeur _bin _1

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: AOP33_4_coeur _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Curtobacterium pusillum


ncbi_organism_name: Agrobacterium cavarae

ncbi_submitter: Academia Sinica


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_strain_identifiers: DSM 498

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Thalassospira povalilytica

ncbi_submitter: Ocean University of China


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pseudomonas sp. UBA6295

ncbi_submitter: University of Queensland


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Auburn University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: DDBJ


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Yersinia intermedia

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: United Kingdom:Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri Shi06HN023

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: South Africa

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute for Communicable Disease


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Guangzhou

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: WOUND/ABSCESS


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Blautia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Paraburkholderia sp. BR10936

ncbi_submitter: The James Hutton Institute


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The University of Queensland


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Octadecabacter sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: France: Paris

ncbi_isolation_source: Throat sample

ncbi_submitter: CHRU Besancon


ncbi_country: China: Jinhua

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. JH23

ncbi_submitter: Jinhua Central Hospital


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: soil

ncbi_organism_name: Kaistia nematophila

ncbi_submitter: University of Neuchatel


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Methylobacteriaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Greece: Western Macedonia

ncbi_isolation_source: artisanal Greek Kefalograviera cheese

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Gansu

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangzhou center for disease control and prevention


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan University of Science and Engineering


ncbi_organism_name: Rhodoferax potami

ncbi_submitter: BIOTEC


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_organism_name: Gardnerella leopoldii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Ilumatobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Recife

ncbi_isolation_source: urine

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_organism_name: Mycoplasmopsis bovis PG45

ncbi_submitter: TIGR


ncbi_country: USA

ncbi_organism_name: Pseudomonas sp. Pdm06

ncbi_submitter: University of Chicago


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Buchnera aphidicola (Phyllaphis fagi)

ncbi_submitter: Centre for Microbiology and Environmental Systems Science


ncbi_isolation_source: rhizosphere soil culture M46

ncbi_organism_name: Streptomyces sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agriculture University


ncbi_country: Slovakia: Sobov mine; Banska Stiavnica

ncbi_isolation_source: stalactite biofilm

ncbi_organism_name: Ferrovum myxofaciens

ncbi_submitter: Institute of Molecular Genetics of the ASCR v.v.i.


ncbi_organism_name: Microbacterium sp. 179-I 3D3 NHS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;g__Microbacterium;x__unclassified Microbacterium;s__Microbacterium sp. 179-I 3D3 NHS


ncbi_country: Spain

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_country: China

ncbi_isolation_source: stool

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Yantai University


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_country: Nicaragua: Managua

ncbi_isolation_source: antrum; stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Streptococcus pyogenes GA19700

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Thermomicrobium sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Australia

ncbi_isolation_source: Clinical Lab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: La Trobe University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany: Hamburg

ncbi_organism_name: Nitrosospira sp. Nsp5

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: Environment

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_organism_name: uncultured Blautia sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_country: China: Haixi City; Qinghai Province

ncbi_isolation_source: Pantholops hodgsonii feces

ncbi_organism_name: Actinomyces sp. 565

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Thailand

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_assembly_name: freshwater MAG --- Ja2_bin-1780

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Commensalibacter communis

ncbi_submitter: ghent university


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: United Kingdom: Carmarthen

ncbi_isolation_source: soil

ncbi_organism_name: Myxococcus sp. CA033

ncbi_submitter: Aberystwyth University


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Danny from private home

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: AnimalBiome


ncbi_organism_name: Staphylococcus aureus A8115

ncbi_submitter: Broad Institute


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong CDC


ncbi_isolation_source: urine

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Ft. Benning; Georgia

ncbi_isolation_source: purulent abscess

ncbi_submitter: Uniformed Services University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Bartonella sp. AP331QHHD


ncbi_country: Germany

ncbi_isolation_source: Poultry Meat (Whole Chicken)

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The German Federal Institute of Risk Assessment (BfR)


ncbi_country: Poland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Japan Institute for Health Security


ncbi_organism_name: Aminobacter ciceronei

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Moellerella wisconsensis

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Dorea sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Kosakonia sacchari

ncbi_submitter: University of Wisconsin-Madison


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: University of Naples Federico II


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Chattogram Veterinary and Animal Sciences University


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_organism_name: Firmicutes bacterium HGW-Firmicutes-11

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium HGW-Firmicutes-11


ncbi_organism_name: Kerstersia gyiorum

ncbi_submitter: West China Hospital


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: China CDC


ncbi_organism_name: Roseburia hominis


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Streptomyces sp. wa1

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC060053

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: stool specimen from a Guillain-Barre syndrome patient

ncbi_organism_name: Campylobacter jejuni HB-CJGB-LXC

ncbi_strain_identifiers: HB-CJGB-LXC

ncbi_submitter: State Key Laboratory for Infectious Disease Prevention and Control, and National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China


ncbi_country: USA: Wheatland; New York

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: RIT-PI-W

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: EMG


ncbi_country: China: Huizhou

ncbi_isolation_source: seawater

ncbi_organism_name: Cysteiniphilum marinum

ncbi_submitter: Guangdong Provincial Hospital of Traditional Chinese Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1022

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Tennessee

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Oklahoma


ncbi_country: China: Hami;Xinjiang

ncbi_isolation_source: Raw chicken from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Actinomyces sp.


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: China: Jiangsu

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: USA: Texas

ncbi_isolation_source: transedoscopic tracheal wash

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: Australia

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces cinnamoneus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nodularia spumigena UHCC 0060

ncbi_strain_identifiers: UHCC 0060

ncbi_submitter: Universidade de Sao Paulo, Sao Paulo, Brazil

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nodulariaceae;g__Nodularia;s__Nodularia spumigena;x__Nodularia spumigena UHCC 0060


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: stony coral

ncbi_organism_name: Allomuricauda sp. SCSIO 64092

ncbi_strain_identifiers: SCSIO 64092

ncbi_submitter: South China Sea Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Allomuricauda;x__unclassified Allomuricauda;s__Allomuricauda sp. SCSIO 64092


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: Caecum


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Roseburia faecis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: PA

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UNIVERSITY OF PENNSYLVANIA


ncbi_organism_name: Pseudomonas sp. zbq_18

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: human oral cavity

ncbi_organism_name: Porphyromonas sp. oral taxon 275

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;x__unclassified Porphyromonas;s__Porphyromonas sp. oral taxon 275


ncbi_organism_name: Salinisphaeraceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Psychrobacillus sp. FSL K6-2684

ncbi_submitter: Penn State


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Czech Republic: Sumava Mountain Range

ncbi_isolation_source: forest soil

ncbi_organism_name: Terracidiphilus gabretensis

ncbi_submitter: Institute of Microbiology of the AS CR


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rennes Hospital


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Peritoneal fluid

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Aeromonas taiwanensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sri Lanka

ncbi_isolation_source: vaginal swab post-delivery

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Ukraine

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: Alabama; Simpson

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: University of California Davis


ncbi_country: Germany

ncbi_isolation_source: not known


ncbi_isolation_source: human gut

ncbi_organism_name: Latilactobacillus sakei


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Israel: Tel Aviv

ncbi_isolation_source: tissue

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: Manis javanica

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: Surgical drain

ncbi_submitter: University of Liverpool


ncbi_organism_name: uncultured Glaciecola sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA47210

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: Xinjiang Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG315

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas luteola XLDN4-9

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Canada: Quebec

ncbi_isolation_source: swab

ncbi_submitter: Government of Canada


ncbi_country: USA

ncbi_organism_name: Escherichia coli O121:H19 str. K5198

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O121:H19;x__Escherichia coli O121:H19 str. K5198


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA7113

ncbi_submitter: University of Queensland


ncbi_country: Thailand

ncbi_isolation_source: Soil

ncbi_organism_name: Planotetraspora thailandica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: China

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG14687

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminobacter sp.


ncbi_country: Japan: Kusatsu

ncbi_isolation_source: feces

ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Osaka Ohtani University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: Japan:Hiroshima; Higashi-Hiroshima

ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: Bioconversion Group, Research Institute for Sustainable Chemistry, Materials and Chemistry, National Institute of Advanced Industrial Science and Technology

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA: New Hampshire

ncbi_isolation_source: ascending colon brush

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of New Hampshire


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Exiguobacterium indicum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium indicum


ncbi_country: Austria

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: USDA


ncbi_organism_name: Roseiflexus sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Bernardetia sp.

ncbi_submitter: Ocean University of China


ncbi_country: Russia:Cape Chukochii; East Siberian Sea

ncbi_isolation_source: permafrost sediment

ncbi_organism_name: Frankiaceae bacterium

ncbi_submitter: Princeton University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: Xiamen University


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: warm; humid forested area with dark clay soil; about 15 cm from the trunk of an Encino tree (Quercus glaucoides (5 cm deep))

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: Denmark

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: College Park; MD

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Prosthecobacter debontii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Antarctica: Gourlay Peninsula

ncbi_isolation_source: soil

ncbi_organism_name: Psychrobacter sp. GP33

ncbi_submitter: International Medical University, IMU


ncbi_organism_name: Mycobacterium tuberculosis H37Rv

ncbi_submitter: Sanger Institute


ncbi_isolation_source: food processing environment

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Rhodomicrobium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: human gut

ncbi_organism_name: Streptococcus infantarius


ncbi_country: South Korea: Yong-in

ncbi_isolation_source: tree

ncbi_organism_name: Mucilaginibacter arboris

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Propionibacteriaceae bacterium UBA6122

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: wild boar feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: Paraguay

ncbi_isolation_source: retropharyngeal; hepatic and mesenteric lymph nodes

ncbi_submitter: South American Mycobacterium bovis WGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: Egypt: Helwan

ncbi_isolation_source: wheat field soil

ncbi_organism_name: Saccharothrix sp. NRRL B-16348

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-2401

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R966;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas sp. JAI115

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Candidatus Ventrimonas sp. JLR.KK005

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ventrimonas;x__unclassified Candidatus Ventrimonas;s__Candidatus Ventrimonas sp. JLR.KK005


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Weissella confusa LBAE C39-2

ncbi_strain_identifiers: LBAE C39-2

ncbi_submitter: LISBP

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Weissella;s__Weissella confusa;x__Weissella confusa LBAE C39-2


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- Erken-D11_bin-0817

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_country: USA

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Mucispirillum schaedleri


ncbi_isolation_source: Lab culture with RPMI 1640 medium plus 10% FBS

ncbi_organism_name: Blastococcus sp. TML/C7B

ncbi_submitter: Center for Biologics Evaluation and Research, Food and Drug Administration


ncbi_country: China: Futian mangrove National Nature Reserve; Shenzhen

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Shewanella sp. AS1

ncbi_submitter: Jinan University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: URMITE


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Toe web space swab

ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: stool

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0166

ncbi_submitter: Broad Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Escherichia coli

ncbi_submitter: JPIAMR ARMIS


ncbi_country: Democratic Republic of the Congo

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Mariniflexile ostreae

ncbi_strain_identifiers: CECT 8622

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Rivibacter subsaxonicus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Sydney Adventist Hospital

ncbi_isolation_source: urine

ncbi_submitter: University of Technology Sydney


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: nodules

ncbi_organism_name: Mesorhizobium sp. B294B1A1

ncbi_submitter: Curtin University


ncbi_assembly_name: Rumen uncultured genome RUG14178

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: low methane producing sheep

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA4387


ncbi_country: Haiti: Cholera Treatment Center; Gressier

ncbi_isolation_source: Stool; Clinical

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptomyces showdoensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 3831A

ncbi_submitter: University of Exeter


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: bone

ncbi_submitter: URMC


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_01_FULL_54_22


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Limosilactobacillus oris

ncbi_submitter: EMG


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: France: APHM

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Henan

ncbi_isolation_source: nasal swab

ncbi_submitter: China Agriculture University


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Enterobacter cloacae


ncbi_country: Thailand: Phatthalung Province

ncbi_isolation_source: Para Rubber Scrap

ncbi_organism_name: Gordonia sp. ABSL11-1

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. ABSL11-1


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Tenacibaculum soleae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Kvitko Lab


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Eremococcus sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Haemophilus haemolyticus


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: freshwater MAG --- Umea1_bin-1195

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Pakistan

ncbi_isolation_source: petroleum oil refinery sludge

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: NIBGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Baltimore; MD

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Halobacteriovorax sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: urine

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_country: Brazil

ncbi_isolation_source: Pie

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Yantai; Yellow sea

ncbi_organism_name: Phaeobacter sp. B1627

ncbi_submitter: Xinxiang Medical University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: gut content

ncbi_organism_name: Parasutterella muris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Brazil: Dourados

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolate: AOP3_F2_surf _bin _5

ncbi_organism_name: Brachybacterium tyrofermentans

ncbi_strain_identifiers: AOP3_F2_surf _bin _5

ncbi_submitter: Genoscope


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Propionicimonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_organism_name: Chloroflexi bacterium RBG_16_70_13

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium RBG_16_70_13


ncbi_country: Ireland

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University College Cork


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China

ncbi_isolation_source: pork

ncbi_submitter: Yangzhou University


ncbi_organism_name: Salmonella sp. NW1049

ncbi_submitter: Sichuan University


ncbi_organism_name: Bradyrhizobium lupini HPC(L)

ncbi_strain_identifiers: HPC(L)

ncbi_submitter: National Environmental Engineering Research Institute


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_submitter: Duke University


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Low Respiratory Tract Infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Coprococcus eutactus


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: James Cook University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_country: USA: Boston

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Poland: Poznan

ncbi_isolation_source: peritoneal fluid

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: National Medicines Institute


ncbi_country: Canada: British Columbia

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Trichormus sp. M33_DOE_039

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_assembly_name: Rumen uncultured genome RUG10745

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Antarctica: Near King Sejong Station

ncbi_isolation_source: Moss sample of penguin habitat

ncbi_organism_name: Kaistella jeonii


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Paenibacillus amylolyticus

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine metagenome


ncbi_country: USA: Rochester

ncbi_isolation_source: sap

ncbi_organism_name: Sphingomonas faeni

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC006700

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Desulfatiglans sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Canada: Guelph

ncbi_isolation_source: Dry seeds

ncbi_organism_name: Bacillus sp. EKM104P

ncbi_submitter: University of Guelph

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. EKM104P


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Klebsiella sp. K47

ncbi_submitter: Universidad de Sonora


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: wenzhou Medical university


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_organism_name: Ottowia sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: Throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Tap water/shower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: New Zealand: Waikato

ncbi_isolation_source: Pernasal

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_country: USA: Mississippi

ncbi_isolation_source: skin

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Uppsala University


ncbi_isolation_source: Pooled sediment sample collected from floor of pig farm

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Germany: Berlin

ncbi_isolation_source: soil

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Fusobacterium periodonticum

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Algicola sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptomyces lanatus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Haemophilus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Russia: Nizhny Novgorod

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Qingdao Agriculture University


ncbi_country: Russia: Kunashir Island

ncbi_isolation_source: shallow-sea hydrothermal vent

ncbi_organism_name: Thermosulfurimonas marina

ncbi_submitter: IUEM


ncbi_country: Slovenia: Zgornja Scavnica

ncbi_isolation_source: cider vinegar

ncbi_organism_name: Gluconacetobacter entanii

ncbi_submitter: Faculty of Natural Sciences and Mathematics


ncbi_organism_name: Micromonospora haikouensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Terrestrial

ncbi_organism_name: Nostoc foliaceum FACHB-393

ncbi_submitter: South China Normal University


ncbi_country: India: Uppinangadi Town; Dakshina Kannada District; Karnataka State

ncbi_isolation_source: Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Madurai Kamaraj University


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Segatella copri


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Rhodovibrionaceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Eubacterium callanderi

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Roseburia amylophila

ncbi_submitter: UIUC


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bosea thiooxidans

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolate: AOP39_D1_surf _bin _7

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: AOP39_D1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Companilactobacillus paralimentarius

ncbi_strain_identifiers: IMDO 1MG86

ncbi_submitter: VRIJE UNIVERSITEIT BRUSSEL


ncbi_country: China: Dashan Tin-Zinc Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Brevundimonas aurantiaca

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_submitter: Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces althioticus group;s__Streptomyces althioticus;sb__Streptomyces althioticus subsp. attaecolombicae


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA

ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: Vollum

ncbi_submitter: Bundeswehr


ncbi_country: USA: New Hampshire

ncbi_isolation_source: ascending colon aspirate

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of South Africa


ncbi_country: China: Ningbo

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ningbo First Hospital


ncbi_country: Switzerland: Bern

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: University of Bern


ncbi_country: Russia: Moscow region; Podolsk

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Saint Petersburg Pasteur's Institute


ncbi_country: Belgium

ncbi_isolation_source: finger

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: PREPARE (Platform foR European Preparedness Against (Re-)Emerging Epidemics, EU-FP7, # 602525


ncbi_isolation_source: soil of HITsz

ncbi_organism_name: Sphingobium yanoikuyae

ncbi_strain_identifiers: ZH

ncbi_submitter: Harbin Institue of Technology(Shenzhen)


ncbi_organism_name: Nisaea sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Colon

ncbi_organism_name: Turicimonas muris


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Belgium: Wallonia

ncbi_submitter: University of Liege


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: Taiwan: Agricultural Experimental Station; National Taiwan University; Taipei

ncbi_isolation_source: soil

ncbi_organism_name: Oryzomicrobium terrae

ncbi_submitter: Academia Sinica


ncbi_organism_name: Shewanella sp. S1-49-MNA-CIBAN-0167

ncbi_submitter: University of Florence


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Mesotoga prima

ncbi_submitter: CLUE-TERRA


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: urinary tract infection

ncbi_submitter: Biosciences and Biotechnology Institute of Grenoble - CEA Grenoble


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsCore1_bin-0177

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: BILS


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ascites

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome RUG11866

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Dysgonomonas sp.


ncbi_country: South Korea: Seoul

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University College of Medicine


ncbi_organism_name: Serratia rubidaea

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: single cell amplified by MDA; feces

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Haruko Takeyama Lab., Waseda University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: AAFC


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Australia

ncbi_isolation_source: cornea

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of New South Wales


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: chicken meat from supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: One Health Poultry Hub


ncbi_submitter: University of Florida


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Rectal

ncbi_submitter: Washington University


ncbi_country: China: Jiangsu

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: Netherlands

ncbi_isolation_source: beet pulp; sugar refinery

ncbi_organism_name: Clostridium thermosuccinogenes

ncbi_submitter: Corbion


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Hosei university


ncbi_organism_name: Blautia obeum

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: South Africa: Ngwelezane

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0074

ncbi_submitter: Broad Institute


ncbi_organism_name: Eggerthella lenta