ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_level: Scaffold

ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Massachusetts Institute of Technology


gtdb_representative: t

ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: feces

ncbi_organism_name: Romboutsia ilealis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_isolation_source: Catheter

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_assembly_level: Complete Genome

ncbi_isolate: WGM

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: WGM

ncbi_submitter: Yale University School of Public Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Wigglesworthia;s__Wigglesworthia glossinidia;x__Wigglesworthia glossinidia endosymbiont of Glossina morsitans;x__Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)


ncbi_country: Switzerland

ncbi_isolation_source: nasal cavities of a pig

ncbi_organism_name: Macrococcus armenti

ncbi_submitter: University of Bern


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides merdae


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gera


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Brevundimonas aurantiaca

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Africa: Cape Town

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces africanus

ncbi_submitter: USDA/ARS/NCAUR

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: New York

ncbi_isolation_source: Wild Grape Roots

ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Deakin University


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia

ncbi_organism_name: Burkholderia pseudomallei MSHR338

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_isolate: SPRUCE 397

ncbi_organism_name: Roseiarcus sp.

ncbi_strain_identifiers: SPRUCE 397

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: EMG


ncbi_country: Canada: Alberta

ncbi_isolation_source: necrotic leaf

ncbi_organism_name: Pseudomonas triticifolii

ncbi_strain_identifiers: DOAB 1067

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Enterococcus faecium UC8668

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Polyu


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Paracoccaceae bacterium


ncbi_country: China: WuHan

ncbi_isolation_source: retail market

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: Indian Ocean

ncbi_isolation_source: Plastic

ncbi_organism_name: Pseudoalteromonas sp. S1649

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


gtdb_type_species_of_genus: t

ncbi_organism_name: Actinocatenispora thailandica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_country: Ghana: Pakro

ncbi_isolation_source: wound

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_assembly_level: Chromosome

ncbi_organism_name: Streptomyces sclerotialus

ncbi_strain_identifiers: NRRL ISP-5269

ncbi_submitter: University of Warwick


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Thailand


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfoprunum sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: University of South Africa


ncbi_country: USA: Kansas

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_country: France: Besancon

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus constellatus


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Curtobacterium flaccumfaciens

ncbi_submitter: Friedrich-Schiller University Jena


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Naval Medical University


ncbi_organism_name: Streptomyces griseoluteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_organism_name: Odoribacter laneus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces globisporus


ncbi_organism_name: Klebsiella sp. R35

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Argonne National Laboratory


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured bacterium


ncbi_country: China: moutai town in Guizhou near the Chishui river

ncbi_isolation_source: Moutai-flavour Daqu

ncbi_organism_name: Laceyella sacchari

ncbi_submitter: Guizhou University


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Xylanibacter rodentium


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Kandleria vitulina WCE2011

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Fibrobacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA

ncbi_isolation_source: abdomen drainage

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: USA: Minesota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis


ncbi_submitter: University of Florida


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Rhizobium sp. 57MFTsu3.2


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: sputum

ncbi_organism_name: Rothia sp. HMSC062F03

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC062F03


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Quadram Institutte


ncbi_country: China: Chongqing

ncbi_isolation_source: fermented bamboo shoots

ncbi_organism_name: Lentilactobacillus senioris

ncbi_submitter: ChongQing Medical University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Russia: Nizhniy Novgorod

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_isolation_source: Pea soup (12h 60 C degree)

ncbi_organism_name: Parageobacillus toebii

ncbi_submitter: University of Groningen


ncbi_organism_name: Streptomyces sp. NPDC048383

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium GW2011_GWF2_40_263


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: IMG-taxon 2675903227 annotated assembly

ncbi_organism_name: Daejeonella rubra

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Hungatella sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Excrementavichristensenella;s__Candidatus Excrementavichristensenella intestinipullorum


ncbi_country: New Zealand:Christchurch

ncbi_isolation_source: Respiratory sample - sputum

ncbi_organism_name: Legionella sainthelensi

ncbi_submitter: Canterbury Health Laboratories


ncbi_country: China: Nanchang

ncbi_isolation_source: liver

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Jiangxi academy of agricultural sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_isolation_source: clinical material

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Monash University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: CA

ncbi_isolation_source: white peach

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Leyella stercorea

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter felis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolate: PalLab

ncbi_organism_name: Rickettsia tamurae subsp. buchneri

ncbi_strain_identifiers: PalLab

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia tamurae;sb__Rickettsia tamurae subsp. buchneri


ncbi_assembly_name: WGS using MinION R10.4.1 of Staphylococcus aureus TUM22698

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 93

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Italy: Verona

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium choloepi

ncbi_strain_identifiers: BRDM 6

ncbi_submitter: University of Bologna


ncbi_organism_name: Chlamydia abortus S26/3

ncbi_submitter: Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia abortus;x__Chlamydia abortus S26/3


ncbi_organism_name: Catellatospora bangladeshensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Nocardia asteroides

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Mesotoga sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Aliarcobacter skirrowii


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: EMG


ncbi_country: USA: Chicago

ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: University of Chicago


ncbi_country: Kenya: Kibera

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: uncultured Sandaracinaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: PROP

ncbi_isolate: Propionicimonas sp. T2.31MG-18

ncbi_organism_name: Propionicimonas sp. T2.31MG-18

ncbi_strain_identifiers: Propionicimonas sp. T2.31MG-18

ncbi_submitter: Centro Biologia Molecular Severo Ochoa (CBMSO)


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Caldisericum sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured cyanobacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Rhizobium sp. Rhizsp42

ncbi_submitter: North Carolina State University


ncbi_organism_name: Brevundimonas vancanneytii

ncbi_submitter: Biology Centre CAS


ncbi_country: Kenya

ncbi_organism_name: Verrucomicrobia bacterium UBA6838

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA6838


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Norway

ncbi_isolation_source: Poultry

ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: Nofima


ncbi_assembly_name: SCACP

ncbi_organism_name: Sporomusa carbonis

ncbi_strain_identifiers: ACPt

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: USA: Hawaii

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: GensKey Medical Technology Co. Ltd.


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides sp. CAG:714

ncbi_submitter: DTU


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Shiraz

ncbi_isolation_source: Wheat rhizosphere

ncbi_organism_name: Pseudomonas proteolytica

ncbi_submitter: KU Leuven


ncbi_isolation_source: WOUND/ABSCESS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidales bacterium


ncbi_country: China: Shenzhen; Guangdong

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium manausense

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Streptococcus salivarius


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Yersinia intermedia

ncbi_submitter: SRCAMB


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-08973

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Anseongella sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Tibetan lake

ncbi_isolation_source: sediment

ncbi_organism_name: Nesterenkonia sp. DZ6

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Bradyrhizobium sp. SZCCHNS3016


ncbi_country: USA: Georgia

ncbi_isolation_source: leaf

ncbi_organism_name: Paracidovorax avenae

ncbi_submitter: Michigan State University


ncbi_country: India: Bangalore

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Indian Institute of Science, Bangalore


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Rectal swab 2

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Central del Ecuador


ncbi_country: Antarctica: Armona point ASPA 133

ncbi_organism_name: Leucobacter luti

ncbi_submitter: Network for Extreme Environment Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ethiopia: Amhara; West Gojam

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Alistipes finegoldii


ncbi_isolation_source: marine

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: National Research and Innovation Agency


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_assembly_name: Rumen uncultured genome RUG12032

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Proteiniphilum sp. UBA4977


ncbi_country: China: Chongqing

ncbi_organism_name: Staphylococcus ureilyticus

ncbi_submitter: University-Town Hospital of Chongqing Medical University


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2211

ncbi_submitter: Broad Institute


ncbi_country: Canada: Guelph

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Castellaniella sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_country: France

ncbi_isolation_source: cheese (Emmental)

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: CIRM-BIA 1440

ncbi_submitter: Brigham Young University


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Cronobacter sakazakii


ncbi_country: USA: Alaska

ncbi_organism_name: Francisella tularensis subsp. tularensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universiteit Antwerpen


ncbi_country: Pacific Ocean

ncbi_isolation_source: 300 m depth seawater

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of New South Wales


ncbi_country: India: Madhya Pradesh; Sehore

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolate: metabat2_XCR1_HOM_6759_bwa.78 MAG

ncbi_organism_name: Enorma massiliensis phI

ncbi_strain_identifiers: metabat2_XCR1_HOM_6759_bwa.78 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: Urology Surgery

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Guangzhou Medical University


ncbi_assembly_name: freshwater MAG --- Loc090519-8-7m_bin-0465

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS TMP-62

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: SZAS TMP-62

ncbi_submitter: The University Hong Kong


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: soil organic matter[ENVO:04000008]

ncbi_organism_name: Bacillus sp. ISL-8

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ISL-8


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Christensenella sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA:New York; CentralBronx

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: uncultured Lentisphaerales bacterium


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_organism_name: Gemmobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Candidatus Caccenecus sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Caccenecus;x__environmental samples;s__uncultured Candidatus Caccenecus sp.


ncbi_organism_name: Ethanoligenens sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: The Ohio State University


ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: aquatic

ncbi_organism_name: Cyanobacteria bacterium UBA8156

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA8156


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: California

ncbi_isolation_source: Advanced Water Purification Facility

ncbi_organism_name: Tolumonas sp.

ncbi_submitter: Colorado School of Mines


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: DOE JGI


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Zavarzinia sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tokai University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada

ncbi_isolation_source: forest soil

ncbi_organism_name: Bradyrhizobium sp. LTSPM299

ncbi_submitter: University of British Columbia


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_submitter: Stanford University


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Capnocytophaga ochracea

ncbi_submitter: US Food and Drug Administration


ncbi_country: Russia: Irkutsk Region; Irkutsk; Ushakovka river

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Plague Control Research Institute of Siberia and Far East


ncbi_isolation_source: soil

ncbi_organism_name: Aminobacter sp. MDW-2

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCBD17_032

ncbi_submitter: University of California, Irvine


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1913R

ncbi_submitter: Broad Institute


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 3094

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Hwanghaeella sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_country: China

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Klebsiella sp. GG_Kp144

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomadura fulvescens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: California; Eel River; South Fork Eel River between Leggett and Piercy

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_submitter: Shanghai Customs


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: EMG


ncbi_country: China: Guizhou

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: India

ncbi_isolation_source: hospital sewage

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Microbiology, Juntendo University


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_isolation_source: wastewater

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: LRB

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Klebsiella aerogenes

ncbi_strain_identifiers: Sil NS 41

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_country: China: HuBei

ncbi_isolation_source: liver

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: cheese

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_organism_name: Candidatus Sysuimicrobium tengchongense

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium tengchongense

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium tengchongense


ncbi_country: Czech Republic: Olomouc

ncbi_isolation_source: mastitis milk

ncbi_organism_name: Gordonia paraffinivorans

ncbi_submitter: Veterinary Research Institute


ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Shewanella sp. 10N.286.48.A6

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG615

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium cryoconiti

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Germany

ncbi_isolation_source: Anal swab

ncbi_submitter: SurvCARE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Institute of Biotechnology, Univerity of Helsinki


ncbi_country: China: Hejiang

ncbi_isolation_source: root

ncbi_organism_name: Paenibacillus dendrobii

ncbi_strain_identifiers: HJL G12

ncbi_submitter: Chengdu institute of biology, Chinese academy of sciences


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Escherichia coli


ncbi_country: USA: Lake Washington

ncbi_organism_name: Acidovorax sp. 100

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Swine farm silos

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna-i.z.s.l.e.r.


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Toronto

ncbi_isolation_source: beef

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: Bangladesh

ncbi_isolation_source: seafood

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Bangladsh Agricultural University


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: groundwater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: influent wastewater at WWTP

ncbi_organism_name: Hafnia alvei

ncbi_strain_identifiers: USC WW2 2022

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Treponema sp.

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Sphingomonas parapaucimobilis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Lactiplantibacillus brownii

ncbi_submitter: Graduate School of Human Life and Ecology, Osaka Metropolitan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bradyrhizobium sp. GCM10023181

ncbi_strain_identifiers: WYCCWR 12678

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Liquorilactobacillus hordei

ncbi_submitter: Teagasc


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Instituto Politecnico Nacional


ncbi_organism_name: Weissella cibaria

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Wageningen Bioveterinary Research


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Lysobacter soli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Methylobacterium iners


ncbi_organism_name: Pleomorphochaeta sp.

ncbi_submitter: JNTUH


ncbi_assembly_name: CCCM 034

ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: CCCM 034

ncbi_submitter: The University of Queensland


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU089

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: University of Sheffield


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NBC_01378


ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Lilbub from private home

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: AnimalBiome


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_organism_name: Methylococcaceae bacterium UBA2778

ncbi_submitter: University of Queensland


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: Japan

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Meijo University faculty of pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 7893

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Antarctica: Vecherniy district of the Tala Hills oasis; Enderby Land

ncbi_isolation_source: meltwater pond

ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_country: China: Beijing

ncbi_isolation_source: sheep meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Thiohalomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: WA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Microcoleus sp. FACHB-53

ncbi_submitter: South China Normal University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Oligoflexales bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin42

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: LAG bin42

ncbi_submitter: Monash University


ncbi_isolation_source: pork


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus faecalis OG1X

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: BGI


ncbi_isolation_source: animal

ncbi_organism_name: Klebsiella pneumoniae subsp. ozaenae

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. ozaenae


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_submitter: Makerere University


ncbi_country: China: South China Sea

ncbi_isolation_source: marine sediments

ncbi_organism_name: Bacillus fonticola

ncbi_submitter: Institute of Oceanology, Chinese academy of sciences


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: Segatella copri

ncbi_submitter: Washington University School of Medicine


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Helmholtz Center Munich


ncbi_country: Nigeria

ncbi_isolation_source: sputum

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Cepheid


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Denmark: Viby

ncbi_isolation_source: activated sludge from Viby_18-Q3-R106-67

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Streptococcus pneumoniae SPN034183

ncbi_submitter: Wellcome Trust Sanger Institute


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Arthrobacter sp. Leaf141

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_country: Turkmenistan: Mary

ncbi_isolation_source: Desert soil

ncbi_organism_name: Microbacterium sp. 5K110

ncbi_submitter: Ondokuz Mayis University


ncbi_country: China: Hainan Island

ncbi_organism_name: Vibrio sp. SCSIO 43155

ncbi_strain_identifiers: SCSIO 43155

ncbi_submitter: South China Sea Institute of Oceanology,Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__unclassified Vibrio;s__Vibrio sp. SCSIO 43155


ncbi_country: Japan:Kanagawa; Miura Peninsula; Oura beach

ncbi_isolation_source: Decaying marine alga

ncbi_organism_name: Halolactibacillus miurensis

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: China: Yantai

ncbi_isolation_source: blood

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: United Kingdom

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: SC


ncbi_organism_name: Shouchella clausii

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_country: China: Zhejiang

ncbi_isolation_source: Chicken Droppings

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: activated sludge from a seawater processing wastewater treatment plant

ncbi_organism_name: Parvicella tangerina

ncbi_submitter: University of Valencia, Spain


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Nonomuraea sp. NPDC049400

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Calothrix anomala FACHB-343

ncbi_submitter: South China Normal University


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Fujian

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: Quadram Institutte


ncbi_country: India

ncbi_isolation_source: Cropfield soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Banaras Hindu University


ncbi_country: USA: MD

ncbi_isolation_source: soft ripened cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Saudi Arabia

ncbi_isolation_source: feces


ncbi_isolation_source: Human Stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Porcipelethomonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Obihiro University of Agriculture and Veterinary Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: apoplast

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: KRIBB


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: JCVI


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_country: China: the coast of Weihai

ncbi_isolation_source: marine sediment

ncbi_organism_name: Salegentibacter sediminis

ncbi_submitter: Shandong University at Weihai


ncbi_country: Peru

ncbi_isolation_source: paranasal sinuses of layer hens

ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: FARVET S.A.C.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lewinella sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_submitter: Aalborg University


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Spiroplasma sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Antwerp


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_assembly_name: freshwater MAG --- T8-5_bin-055

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Caldilineaceae bacterium SB0665_bin_21

ncbi_submitter: University of Queensland


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P16 CL A7

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Microbacterium sp. LWO13-1.2

ncbi_submitter: Interfaculty Research Collaboration â€œOne Healthâ€ of the University of Bern


ncbi_country: USA: Ohio

ncbi_isolation_source: turkey

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: U.S. Food and Drug Administration


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Usitatibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital


ncbi_country: Canada: Waterloo

ncbi_isolate: SO_2017_CLC bin 82

ncbi_isolation_source: leachate from a composite leachate cistern at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_strain_identifiers: SO_2017_CLC bin 82

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Cincinatti

ncbi_isolation_source: blood

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: stool

ncbi_organism_name: Intestinibacillus sp. Marseille-P6563

ncbi_submitter: URMITE


ncbi_country: Italy

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides graminisolvens;x__Bacteroides graminisolvens DSM 19988 = JCM 15093


ncbi_organism_name: Psychrobacter sp. TWP2-1-2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Taiwan

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: China: Shenzhen

ncbi_organism_name: Coprobacillus sp. AF13-25

ncbi_submitter: BGI


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: USA: FL

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: Finland: Kesalampi

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. UK-Kesae-W10

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of California at Davis


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Michigan


ncbi_organism_name: Hoylesella saccharolytica

ncbi_submitter: EMG


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Zurich


ncbi_country: China

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S016

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S016


ncbi_submitter: The First Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UCSF


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Rumen uncultured genome RUG275

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli O104:H4 str. ON2011

ncbi_submitter: Wayne State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. ON2011


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Lawsonibacter sp.


ncbi_country: Antarctica: Robinson Ridge

ncbi_isolation_source: pooled data from three different soil samples

ncbi_organism_name: Candidatus Aeolococcus gillhamiae

ncbi_submitter: nstitute of Tibetan Plateau Research, Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Aeolococcales;f__Candidatus Aeolococcaceae;g__Candidatus Aeolococcus;s__Candidatus Aeolococcus gillhamiae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Aeolococcales;f__Candidatus Aeolococcaceae;g__Candidatus Aeolococcus;s__Candidatus Aeolococcus gillhamiae


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri


ncbi_isolation_source: volcanic soil

ncbi_organism_name: Heyndrickxia shackletonii

ncbi_submitter: China Center of Industrial Culture Collection


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Brazil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: LNCC


ncbi_organism_name: Bradyrhizobium sp. I1.8.5

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- Ja_bin-0208

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_country: USA: MS

ncbi_isolation_source: Clinical specimen

ncbi_organism_name: Staphylococcus aureus DAR3551

ncbi_submitter: Broad Institute


ncbi_organism_name: Bisgaard Taxon 45

ncbi_submitter: Statens Serum Institut


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: New York

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Ileibacterium valens

ncbi_submitter: Brigham and Women's Hospital


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_country: China: Chizhou; Anhui

ncbi_isolation_source: pesticide plant soil

ncbi_organism_name: Prescottella equi

ncbi_strain_identifiers: MET

ncbi_submitter: Zhejiang Univesity


ncbi_organism_name: Roseateles sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Greece

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: bioMerieux


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Candidatus Fermentibacterota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;x__unclassified Candidatus Fermentibacterota;s__Candidatus Fermentibacterota bacterium


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteroidales bacterium UBA4073

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4073


ncbi_country: USA: California; Eel River; Little Larabee Creek

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_18_LLB_O_A

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Borreliella burgdorferi 29805

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Bile; gall bladder wall and abdominal fluid swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Cryobacterium sp. W22_MBD10_FK3

ncbi_submitter: United States Naval Academy


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Ectopseudomonas khazarica

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: uncultured Cellvibrionaceae bacterium


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin23

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: LAG bin23

ncbi_submitter: Monash University


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Heyndrickxia sporothermodurans


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Salmonella sp. NW1255

ncbi_submitter: Sichuan University


ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: the First Medicine Centre, Chinese PLA General Hospital


ncbi_organism_name: Plasticicumulans sp.

ncbi_submitter: Nanyang Technological University


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_isolation_source: Shrimp feed

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Estacao Marinha de Aquicultura - EMA - FURG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_genome_category: derived from single cell

ncbi_organism_name: Escherichia coli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Planctomycetota bacterium


ncbi_country: Japan

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Toho University


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Desulfomonilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- AM-2014-D5_bin-603

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Ares Genetics


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_assembly_name: freshwater MAG --- KR3_bin-0872

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acetobacteraceae bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: China: Nanjing

ncbi_isolation_source: Laboratory-scale bioreactor

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: NanJing University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_submitter: University of Zurich


ncbi_organism_name: Mycobacterium tuberculosis EAI5/NITR206

ncbi_submitter: National Institute of Tuberculosis Research, Chennai, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis EAI5;x__Mycobacterium tuberculosis EAI5/NITR206


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_organism_name: uncultured Rhodococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Akkermansia sp. UBA5128

ncbi_submitter: University of Queensland


ncbi_isolation_source: drain tip

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Toho university


ncbi_organism_name: Streptomyces sulfonofaciens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Stanford University School of Medicine


ncbi_country: India

ncbi_isolation_source: Pus swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Tamil Nadu Veterinary and Animal Sciences University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Paenibacillus alvei

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_submitter: SC


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Sichuan Normal University


ncbi_country: India: Chandigarh

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 321

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: SNUC 5606

ncbi_submitter: University of Calgary


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus Rd.51

ncbi_submitter: Broad Institute


ncbi_country: Netherlands

ncbi_isolation_source: soil / grassland

ncbi_organism_name: Priestia endophytica

ncbi_submitter: University of Groningen


ncbi_country: South Africa

ncbi_isolation_source: Fresh produce

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: UPMP 2023

ncbi_submitter: University of Pretoria


ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Cornell University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. pseudolongum

ncbi_submitter: University of Parma


ncbi_country: Viet Nam: Ha Noi

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Enterobacter kobei


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Division of Infection Control and Prevention, Medical Mycology Research Center, Chiba University


ncbi_country: India: Mawbri; Meghalaya

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Pseudonocardia sp. TRM90224

ncbi_submitter: Tarim University


ncbi_organism_name: Paratractidigestivibacter faecalis

ncbi_submitter: University of Manitoba


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Austria: Kremesberg 11

ncbi_isolation_source: rumen epithelial tissue

ncbi_organism_name: Campylobacter sp. JMF_06 NA1

ncbi_strain_identifiers: JMF_06 NA1

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: Mariane macroalgea Gelidium sp.


ncbi_isolation_source: Hospital

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: Haukeland University Hospital


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Washington University School of Medicine


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Helicobacter cetorum

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Juazeiro; Bahia State

ncbi_isolation_source: Biological sample

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Minas Gerais


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-1123

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Nanjing Agriculture University


ncbi_assembly_name: Rumen uncultured genome RUG419

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces violaceusniger

ncbi_strain_identifiers: NRRL F-8817

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Hyphomonas sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: EMG


ncbi_isolation_source: Rhizosphere soil of a rice cultivar; Norin 18

ncbi_organism_name: Oharaeibacter diazotrophicus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South Dakota State University


ncbi_country: China: Anhui

ncbi_isolation_source: chicken meat products

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: China: the East China Sea

ncbi_isolation_source: enrichment culture inoculated with surface estuarine sediment

ncbi_organism_name: Roseibium sp.

ncbi_submitter: Shanghai Jiao Tong University (SJTU)


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Vibrio sp. JCM 18905

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__unclassified Vibrio;s__Vibrio sp. JCM 18905


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2622736582 annotated assembly

ncbi_organism_name: Carnobacterium iners

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Eastbourne


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_assembly_name: IMG-taxon 2667527226 annotated assembly


ncbi_organism_name: Mycobacterium sp. 141

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Peru:Trujillo; Salaverry; ENAPU

ncbi_organism_name: Yersinia pestis PY-66

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Holophagales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_submitter: University of Nottingham


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Laboratorios veterinarios Lasser


ncbi_organism_name: Rubritalea tangerina

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Paraburkholderia sp. RHO2

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: McMaster University


ncbi_organism_name: Stenotrophomonas sp. NPDC077464

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces anulatus


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Roseomonas sp. CGMCC 1.13459


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Hebei University Of Technology


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: UIUC


ncbi_organism_name: Streptomyces sp. NPDC020898


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Italy

ncbi_isolation_source: Swab (dairy plant)

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured delta proteobacterium


ncbi_country: India

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: rumen

ncbi_organism_name: Treponema sp. UBA2879

ncbi_submitter: University of Queensland


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: EMG


ncbi_country: China: Henan

ncbi_isolation_source: probiotic product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: south china agriculture university


ncbi_assembly_name: IMG-taxon 2636416038 annotated assembly

ncbi_organism_name: Pseudomonas deceptionensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V26_P1S5P106

ncbi_submitter: Instituto de ecologia


ncbi_country: Philippines: Surigao del Sur

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. S816

ncbi_submitter: University of Warwick


ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: the Yellow Sea

ncbi_isolation_source: bottom seawater

ncbi_organism_name: Thioclava sp. IC9

ncbi_submitter: Thioclava sp. IC9 (MCCC 1A02765) is available from MCCC (Marine Culture Collection of China) (http://www.mccc.org.cn/).


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University