ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Tennessee

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Oklahoma


ncbi_assembly_level: Scaffold

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Wilmar International Limited


gtdb_representative: f

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: marine

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Crystal Geyser near Green River; Utah


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H59298

ncbi_submitter: Broad Institute


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: China: Yuandadu Park

ncbi_isolation_source: sediment

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium YD0425bin50


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Hong Kong

ncbi_isolation_source: Anaerobic acesulfame-degrading enriched consortia

ncbi_organism_name: Shinella sp. HY16

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Bifidobacterium thermophilum

ncbi_submitter: EMG


ncbi_country: Canada: Rivire St-Jean; Gasp; Quebec

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_country: Italy

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Life Science


ncbi_organism_name: Desulfotalea sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Richmond; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Atopobium sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: Pseudomonas asturiensis

ncbi_submitter: University of Arizona


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Ostreiculturibacter nitratireducens

ncbi_submitter: Quanzhou Normal University


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: Brazil: Rio de Janeiro; UFRJ

ncbi_isolation_source: oropharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Fiocruz


ncbi_country: Russia: Moscow

ncbi_isolation_source: catheter

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasopharyngeal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 100

ncbi_submitter: SC


ncbi_country: South Korea: Hadong-gun; Gyeongsangnam-do

ncbi_isolation_source: gut

ncbi_organism_name: Poseidonibacter ostreae

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ensifer canadensis

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Yunnan

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Succinivibrionaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Colombia

ncbi_organism_name: Mycobacterium colombiense CECT 3035

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: CECT 3035

ncbi_submitter: Universidad Nacional de Colombia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium colombiense;x__Mycobacterium colombiense CECT 3035

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Changsha

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Xiangya hospital, Central South University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter sp. L710-11


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Utrecht University


ncbi_organism_name: Streptomyces sp. NPDC056628

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Azoarcus sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: Australia: Victoria

ncbi_isolation_source: Bile of chicken infected with Spotty Liver Disease

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Geminicoccaceae bacterium


ncbi_country: Japan: Hokkaido

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Candidatus Evtepia faecavium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;s__Candidatus Evtepia faecavium


ncbi_organism_name: Conexibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: gut (caecum)

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: North Carolina State University


ncbi_country: USA: MO

ncbi_isolation_source: stool sample of individual with bacteremia

ncbi_organism_name: Escherichia coli MC21

ncbi_submitter: The Genome Institute


ncbi_country: China: Beijing

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Ignavibacterium sp.

ncbi_submitter: Beijing University of Chemical Technology


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: ectocervical mucosa

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Archangium lansingense

ncbi_submitter: University of Mississippi


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Xenococcaceae cyanobacterium MO_188.B32

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Lactobacillus iners


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University College Cork


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 151 (4-5755573)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 151 (4-5755573)


ncbi_organism_name: Rothia aerolata

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Kitasatospora purpeofusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Coprococcus eutactus


ncbi_organism_name: Prochlorothrix sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_assembly_name: Cuture of bacteria from human gut

ncbi_organism_name: bacterium OL-1

ncbi_submitter: URMITE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Gaiella sp.

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: uncultured Rickettsia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: China: Guizhou Province

ncbi_isolation_source: plant

ncbi_organism_name: Amnibacterium flavum

ncbi_submitter: Research Center for Medicine & Biology


ncbi_country: USA: Nebraska

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Colorado State U


ncbi_organism_name: uncultured Schwartzia sp.


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: Oregon State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Blautia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Atlantic Ocean

ncbi_isolation_source: water

ncbi_organism_name: Pseudoalteromonas sp. Angola-7

ncbi_submitter: Michigan Technological University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_organism_name: Roseburia sp. AF25-18LB

ncbi_submitter: BGI


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: Activated sludge

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


gtdb_type_species_of_genus: t

ncbi_country: Japan

ncbi_organism_name: Tuberibacillus calidus DSM 17572

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Helicobacter ganmani


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: China: Henan

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Yangzhou University


ncbi_country: Germany: Bielefeld

ncbi_isolation_source: plastic surface of detergent compartment of a washing machine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Bielefeld University


ncbi_isolation_source: metagenome


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: University of Chicago


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Vibrio sp. Vb2898

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Universite catholique de Louvain


ncbi_organism_name: Curtobacterium sp. NPDC092190

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Longimicrobiaceae bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Ruijin Hospital


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Ectopseudomonas;s__Ectopseudomonas oleovorans;sb__Pseudomonas oleovorans subsp. oleovorans;x__Pseudomonas oleovorans subsp. oleovorans NBRC 13583 = DSM 1045


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Leclercia sp. LK8

ncbi_submitter: University of Malaya


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_isolation_source: human gut

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: New York; Cornell University

ncbi_isolation_source: from patients with uncomplicated; anterior urethritis

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Muenster


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Ileo-caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: World institute of kimchi


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_country: Kazakhstan

ncbi_isolation_source: root nodules

ncbi_organism_name: Sinorhizobium meliloti AK75

ncbi_submitter: University of Florence


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: SC


ncbi_country: Spain: Parque Natural Alto Tajo; Guadalajara

ncbi_isolation_source: vulture feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_country: Germany: long-term fertilization experiment Paulinenaue

ncbi_isolation_source: peat soil

ncbi_organism_name: Bacillus sp. N5-665

ncbi_submitter: Exploratories for large-scale and long-term functional biodiversity research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. N5-665


ncbi_organism_name: Xanthomonas sp. NCPPB 2865

ncbi_strain_identifiers: NCPPB 2865

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea: Goyang

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus terricola

ncbi_submitter: dongguk university


ncbi_organism_name: Nesterenkonia massiliensis

ncbi_submitter: EMG


ncbi_country: Australia: Kalgoorlie

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef carcass

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual T

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Texas

ncbi_organism_name: Haematobacter massiliensis

ncbi_submitter: CDC


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: AAFC


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Euryhalocaulis sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: United Kingdom: England

ncbi_isolation_source: Cecal contents

ncbi_organism_name: Alistipes sp. UBA1813

ncbi_submitter: University of Queensland


ncbi_country: New Caledonia: Prony Bay; Bain des Japonais

ncbi_isolation_source: carbonated precipitates

ncbi_organism_name: Alkaliphilus sp. B6464

ncbi_submitter: Mediterranean Institute of Oceanography (MIO), UMR 7294


ncbi_country: France: Normandy

ncbi_isolation_source: sink trap

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_organism_name: Streptococcus sanguinis SK36

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Tepidibacter aestuarii

ncbi_submitter: Genoscope CEA


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Campylobacter coli

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: University of Waterloo


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_submitter: University of Florida


ncbi_organism_name: Streptococcus sp. IMAU11618

ncbi_submitter: Key Laboratory of Dairy Biotechnology and engineering


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Department of Clinical Laboratory, the Affiliated Suzhou Hospital of Nanjing Medical University


ncbi_organism_name: Enterobacter cancerogenus

ncbi_submitter: EMG


ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Cornell University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Laboratorio de Microbiologia Hospitalaria y de la Comunidad


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Senegalimassilia faecalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- Ja_bin-1734

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Archangium sp.

ncbi_submitter: BILS


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_submitter: Colorado State University


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium algoricola

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_level: Chromosome

ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T16664

ncbi_submitter: Broad Institute


ncbi_country: China: Inner Mongolia

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_country: China: Central China Fuwai Hospital of Zhengzhou University

ncbi_isolation_source: Ductus venosus from patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: YangZhou university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Sao Paulo


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Jeju

ncbi_isolation_source: dried seaweed

ncbi_organism_name: Microbacterium aurugineum

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: Kenya

ncbi_organism_name: Prevotellaceae bacterium UBA6484

ncbi_submitter: University of Queensland


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-808

ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: BILS


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Francisella sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Ilumatobacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Centers for Disease Control, Taiwan


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Pittsburgh


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Italy

ncbi_isolation_source: inguinal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Tanzania

ncbi_submitter: University of Copenhagen


ncbi_country: United Kingdom

ncbi_organism_name: Coprococcus ammoniilyticus

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Enterococcus pernyi

ncbi_submitter: Broad Institute


ncbi_organism_name: Lysinibacillus sp. PLM2

ncbi_submitter: Keio University


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Padova


ncbi_country: Mexico: Oaxaca

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN


ncbi_country: France: Paris

ncbi_isolation_source: bronchial exudate

ncbi_organism_name: Proteus mirabilis

ncbi_strain_identifiers: PmirS

ncbi_submitter: INSERM 1137


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Oklahoma State University


ncbi_submitter: The First Affiliated Hospital, Jiangxi Medical College, Nanchang University


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_assembly_name: Pseudovibrio sp. AU243 genome

ncbi_isolate: Pseudovibrio sp. AU243

ncbi_organism_name: Pseudovibrio ascidiaceicola

ncbi_strain_identifiers: Pseudovibrio sp. AU243

ncbi_submitter: UNSW


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gemmatimonadales bacterium UBA6588

ncbi_submitter: University of Queensland


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Zhengella sp.

ncbi_submitter: Rutgers University


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-0892

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Singapore General Hospital


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lishui Hospital, Zhejiang University School of Medicine


ncbi_assembly_name: Salmonella enterica CVM N51299 v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Paenibacillus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Fujian

ncbi_organism_name: Paraferrimonas haliotis

ncbi_submitter: Third Institute of Oceanography, SOA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Candidatus Izemoplasma sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;x__unclassified Candidatus Izemoplasma;s__Candidatus Izemoplasma sp.


ncbi_country: USA: DC

ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Herbaspirillum huttiense subsp. huttiense

ncbi_submitter: university of florida


ncbi_organism_name: Helcococcus kunzii

ncbi_submitter: INSERM U1047


ncbi_organism_name: Streptococcus sp. KHUD_014

ncbi_submitter: kyunghee university


ncbi_country: China: Guangdong;Guangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 192 - depth 200m

ncbi_organism_name: Moraxellaceae bacterium REDSEA-S44_B2

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (MCD) from International Space Station

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: J.Craig Venter Institute


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: Sil NS 4

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Israel

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heriot-Watt University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces sp. NPDC058718

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Thioalkalivibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Streptomyces cyaneofuscatus


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Brucella abortus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d'Aosta


ncbi_organism_name: Bacillus cereus group sp. BceL073

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL073


ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Rhodococcoides fascians LMG 3616

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Greece: Palaeochori Bay

ncbi_isolation_source: water

ncbi_organism_name: Filobacillus milosensis

ncbi_submitter: Shandong University at Weihai


ncbi_country: USA: MI; Macomb

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: wastewater treatment plant effluent

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Chunlab


ncbi_organism_name: Microcoleus sp. w2-18aC4

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bacillus vallismortis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 653049 13-19


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus infantarius


ncbi_country: Japan

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudoalteromonas phenolica

ncbi_submitter: KCTC (Korean Collection for Type Cultures)


ncbi_organism_name: Cupriavidus plantarum

ncbi_submitter: Northwest Missouri State University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: BGI


ncbi_country: USA: Tucson; AZ

ncbi_organism_name: Candidatus Karelsulcia muelleri CARI

ncbi_strain_identifiers: CARI

ncbi_submitter: University of Montana

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri;x__Candidatus Karelsulcia muelleri CARI


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_country: China: Baotou city of inner Mongolia autonomous region

ncbi_isolation_source: blood

ncbi_organism_name: Brucella abortus

ncbi_submitter: Shanghai JiaoTong University School of Medicine


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: Xiamen University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA4871

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: high-temperature Daqu

ncbi_organism_name: Cellulosimicrobium sp. XJ-DQ-B-000

ncbi_submitter: Guizhou Xijiu Co., LTD


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: Surface Water (Environmental)

ncbi_organism_name: Vibrio cholerae O139

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EBI


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Corynebacterium pyruviciproducens

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Uzbekistan: Karakalpakstan

ncbi_organism_name: Francisella tularensis subsp. mediasiatica

ncbi_submitter: SRCAMB


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Poland: Poznan

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Mycoplasma sp. CAG:776

ncbi_submitter: DTU


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: soil [ENVO:00001998]|soil organic matter [ENVO:04000008]|plant litter [ENVO:01000628]|plant matter [ENVO:01001121]

ncbi_organism_name: Streptomyces laculatispora

ncbi_submitter: DNASense ApS


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Viet Nam: Hoai Duc; Ha Noi

ncbi_isolation_source: soil from tomato plant

ncbi_organism_name: Brevibacillus sp. HD1.4A

ncbi_submitter: ENDOBICA


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Turkey

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Black Sea Agricultural Research Institute


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Mycoplasmopsis primatum ATCC 25948

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Breznakia sp. PF5-3


ncbi_isolation_source: sewage

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: Canada: Ontario

ncbi_isolation_source: plant matter [ENVO:01001121]

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human fecal sample

ncbi_organism_name: Ezakiella peruensis

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Ezakiella;s__Ezakiella peruensis


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Raoultella planticola


ncbi_country: China: Heilongjiang

ncbi_isolation_source: gut

ncbi_submitter: Harbin Medical University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: EMG


ncbi_country: India: Tirunelveli; Senthimangalam

ncbi_isolation_source: Paddy cultivating soil

ncbi_organism_name: Bacillus stercoris

ncbi_submitter: Sri Ramachandra Institute of Higher Education and Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC059832

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Ghent University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Streptosporangium lutulentum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: China-Japan Friendship Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Ithaca; New York

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: USA: University of Wisconsin Hospital

ncbi_organism_name: Enterococcus faecalis EnGen0416

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: SEMIA 475

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_submitter: East China Normal University


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: LokiAmp MDA-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: The Gulf of Alaska; Kodiak Island

ncbi_isolation_source: internal tissue

ncbi_organism_name: Cobetia amphilecti

ncbi_strain_identifiers: NRIC 0815

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Sweden

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Uppsala University


ncbi_country: Iran

ncbi_organism_name: Curtobacterium aurantiacum

ncbi_strain_identifiers: CFBP 8823

ncbi_submitter: University of Tehran


ncbi_country: Netherlands: Utrecht

ncbi_organism_name: Campylobacter fetus

ncbi_submitter: Utrecht University


ncbi_country: Switzerland

ncbi_submitter: University of Lausanne


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AGROSAVIA


ncbi_country: USA

ncbi_isolation_source: Thalamic Basal Ganglia

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_strain_identifiers: Newman

ncbi_submitter: Shanghai Pulmonary Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus str. Newman


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_assembly_name: De novo assembly of KCRI isolate RDK05_558

ncbi_isolation_source: wound swab sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_country: China: Chongqing

ncbi_isolation_source: Surgical wound

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Wadsworth Center - NYS DOH


ncbi_organism_name: Xanthomonas campestris pv. fici

ncbi_strain_identifiers: NCPPB 3886

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Japan

ncbi_isolation_source: Paralichthys olivaceus

ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: The University of Tokyo, Graduate School of Agricultural and Life Sciences


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Escherichia sp. WS547

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_country: Cote d Ivoire

ncbi_isolation_source: bovine milk; sour milk fermented

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ETH Zurich


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: Canada: Calgary

ncbi_isolation_source: chemostat inoculated with river sediment

ncbi_organism_name: Youngiibacter sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: USA: Colorado

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_submitter: INRA


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: De novo assembly of KCRI isolate RDK06_379A

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Sulfitobacter sp. UBA4523


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: The Edison Family Center for Genome Sciences and Systems Biology


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Mesotoga sp.

ncbi_submitter: University of Waterloo


ncbi_country: Italy: Rome

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Rome "La Sapienza"


ncbi_isolate: XDR-PA

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus benefaciens

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus benefaciens


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_organism_name: Candidatus Auribacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Auribacterota;x__unclassified Candidatus Auribacterota;s__Candidatus Auribacterota bacterium


ncbi_country: Russia

ncbi_isolation_source: not known


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UMCG Groningen


ncbi_organism_name: Hathewaya histolytica

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: USA: District of Columbia

ncbi_isolation_source: urine

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Oculatella sp. FACHB-28

ncbi_submitter: South China Normal University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Ponticaulis sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium scrofulaceum

ncbi_submitter: JCVI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ruminococcus bovis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: prosthetic joint infections

ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Aarhus University


ncbi_organism_name: Olegusella massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Streptomyces sp. MMS24-I29

ncbi_submitter: Chungnam National University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Tenacibaculum sp. ZH5_bin.1

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin36

ncbi_isolation_source: soil

ncbi_strain_identifiers: LAG bin36

ncbi_submitter: Monash University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Zibo; Shandong Province

ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: C35 original

ncbi_submitter: Friendship Hospital, Capital Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: dairy

ncbi_organism_name: Leuconostoc mesenteroides subsp. cremoris

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_country: USA: Durham; NC

ncbi_isolation_source: urine; straight cath

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Alabama in Huntsville


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Robiginitalea sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Spain

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium ciceri

ncbi_submitter: University of Pretoria


ncbi_country: India: Pirana landfill site; Ahmedabad; Gujarat

ncbi_isolation_source: Dumpsite

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: GBRC


ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Peru

ncbi_isolation_source: kidney

ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Instituto Tecnologico de la Produccion


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Australia

ncbi_isolation_source: cornea

ncbi_submitter: University of New South Wales


ncbi_isolation_source: burned soil

ncbi_organism_name: Hyphomicrobiales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Lederle Labs; Pearl River; NY

ncbi_organism_name: Streptomyces pathocidini

ncbi_submitter: USDA/ARS/NCAUR


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Actinomyces naeslundii

ncbi_submitter: EMG


ncbi_country: India: Telangana; Patancheru

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: New Zealand

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Massey University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 115

ncbi_organism_name: Staphylococcus agnetis

ncbi_strain_identifiers: SNUC 1371

ncbi_submitter: University of Calgary


ncbi_country: China

ncbi_isolation_source: biofilm reactor

ncbi_organism_name: Aeromonas media

ncbi_submitter: Research Center for Eco-Environmental Sciences


ncbi_country: China: South China Sea

ncbi_isolation_source: cold spring

ncbi_organism_name: Exiguobacterium sp. s52

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s52


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0310

ncbi_submitter: Broad Institute


ncbi_country: Japan: Naha; Okinawa prefecture

ncbi_isolation_source: soil

ncbi_organism_name: Lysobacter sp. BMK333-48F3

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: LILPNEUHC 19F

ncbi_submitter: University of Lausanne


ncbi_organism_name: Cutibacterium granulosum

ncbi_submitter: Tianjin Nankai Hospital


ncbi_strain_identifiers: CECT 5772

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. ruminatorum;x__Streptococcus equi subsp. ruminatorum CECT 5772


ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: SPRUCE 620

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_strain_identifiers: SPRUCE 620

ncbi_submitter: Georgia Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_submitter: Swansea University


ncbi_country: Germany

ncbi_isolation_source: Atacama desert soil

ncbi_organism_name: Pseudonocardia nigra

ncbi_submitter: Chengdu University


ncbi_organism_name: Psychrobacillus sp. FSL H8-0510

ncbi_submitter: Penn State


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: INRA


ncbi_country: South Korea

ncbi_isolation_source: Porcine feces

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Seoul National University


ncbi_country: Namibia: Otavi

ncbi_isolation_source: Nest material

ncbi_organism_name: Nocardioides sp. IC4_145

ncbi_submitter: Aahus University


ncbi_organism_name: Streptomyces sp. NPDC096538


ncbi_country: China: Yellow River

ncbi_isolation_source: heavy metal contaminated soil

ncbi_organism_name: Rhizobium sp. LZ-R

ncbi_strain_identifiers: LZ-R

ncbi_submitter: LZU


ncbi_assembly_name: Rumen uncultured genome RUG10617

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Poland: Gdansk

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: Australia: Ben Boyd National Park; NSW

ncbi_isolation_source: plant root nodule

ncbi_organism_name: Bradyrhizobium commune

ncbi_submitter: Universite Claude Bernard - Lyon 1


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium GW2011_GWF2_41_40


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Ce105

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Morganella morganii


ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: China CDC


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Finland: Helsinki

ncbi_isolation_source: blood

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Helsinki


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_country: Ghana: Northern region

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Noguchi Memorial Institute fir Medical Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Paenibacillus oleatilyticus

ncbi_submitter: Botswana international University of Science and Technology


ncbi_country: Switzerland: St. Gallen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Laboratory Medicine


ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of California, Riverside


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Neomicrothrix parvicella

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella sp. SKLX085164

ncbi_submitter: Zhejiang university


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-2647

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2619618961 annotated assembly

ncbi_organism_name: Shimia marina

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Chile

ncbi_isolation_source: amniotic fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology, Sydney


ncbi_country: USA

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: EMG


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France: Languedoc-Roussilon

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_isolation_source: chard

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Wayne State University


ncbi_assembly_name: Rumen uncultured genome RUG11895

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_country: Italy: Rome

ncbi_isolation_source: left-sided endocarditis

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: China: Gansu

ncbi_isolation_source: Continental desert steppe climate

ncbi_organism_name: Ochrobactrum chromiisoli

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Anaeromassilibacillus sp.

ncbi_submitter: EBI


ncbi_country: USA: WA

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: University of Washington


ncbi_country: South Korea: Jeollanam-do

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Chung-Ang University


ncbi_country: South Africa: THABO MOFUTSANYANA; Free State Province

ncbi_isolation_source: Cows Milk

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China: Tengchong city

ncbi_isolation_source: estuarine mud [ENVO:00002160]

ncbi_organism_name: Geobacillus sp. CX412

ncbi_submitter: Tongji University


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: IA

ncbi_isolation_source: feces mink mustelidae

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China

ncbi_organism_name: Leisingera caerulea

ncbi_submitter: Ocean University of China


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Centre of Biotechnology of Sfax


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Nevada, Reno


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Leyella stercorea

ncbi_submitter: BGI


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_isolation_source: Colon

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: Coffee Co.; GA

ncbi_isolation_source: Florida pusley

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Clostridium acetobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 38

ncbi_strain_identifiers: CHS 38

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 38


ncbi_organism_name: Butyricimonas paravirosa


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: South Africa

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: UPMP 1794

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Shigella sp. FC6484

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: USA: MN

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: US Food and Drug Administration


ncbi_country: France: Nimes

ncbi_isolation_source: sputum from cystic fibrosis patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Montpellier Service de Microbiologie et Hygiene Hospitaliere CHU Nimes


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Spain

ncbi_isolation_source: Laying hens

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Albidovulum sp.

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Asticcacaulis sp. SL142

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Comamonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium gallicum;x__Bifidobacterium gallicum DSM 20093 = LMG 11596


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Abuja


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: Sichuan Province

ncbi_isolation_source: Large-scale pig farm

ncbi_submitter: Sichuan Agricultural University


ncbi_country: USA

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: The Ohio State University


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfurobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Streptomyces sp. NPDC006309

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Micropepsaceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolate: AOP35_03H_surf _bin _41

ncbi_organism_name: Marinobacter sp.

ncbi_strain_identifiers: AOP35_03H_surf _bin _41

ncbi_submitter: Genoscope


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2025EL-00025


ncbi_organism_name: uncultured Spirulina sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Coraliomargaritaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_organism_name: Alistipes inops


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_isolation_source: cold seep

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 10 to 15cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: EPFL


ncbi_country: South Korea: Chungbuk; Cheongju

ncbi_isolation_source: rice paddy soil

ncbi_organism_name: Elioraea rosea

ncbi_submitter: Mokwon University, Korea


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: University of Bern


ncbi_country: China: Bejing

ncbi_isolation_source: Anus

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China Agricultural University


ncbi_isolate: CON5 bin18

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: CON5 bin18


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Thailand: northeast

ncbi_isolation_source: rice field

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Sandia National Laboratories


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Devosia sp. 66-22

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: Rumen uncultured genome RUG11754

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Huashan Hospital


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: China: Quanzhou; Fujian; Quanzhou Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Myroides marinus

ncbi_submitter: REALGENE


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Aquitaenariimonas noxiae

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Aquitaenariimonas;s__Candidatus Aquitaenariimonas noxiae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Aquitaenariimonas;s__Candidatus Aquitaenariimonas noxiae


ncbi_organism_name: Kribbellaceae bacterium

ncbi_submitter: Colorado State University