ncbi_country: USA

ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: Switzerland

ncbi_genome_representation: full

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_assembly_level: Contig

ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Mesorhizobium sp. M0520

ncbi_submitter: Washington State University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of California, Berkeley


gtdb_representative: t

ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptomyces pilosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Micromonospora sp. NPDC057140


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dysosmobacter welbionis


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: uncultured Loktanella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Escherichia coli


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Cupriavidus necator

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: forest soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Citrobacter freundii


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Montana State University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_submitter: University of Tehran


ncbi_organism_name: Escherichia coli LCT-EC106

ncbi_submitter: Escherichia coli


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Christensenellales bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_assembly_level: Chromosome

ncbi_country: China: Shanghai

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Public Health Clinical Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: CA

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Broad Institute


ncbi_country: USA:New York City

ncbi_isolation_source: culture

ncbi_organism_name: Sporosarcina koreensis

ncbi_submitter: University of Queensland


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: MORINAGA MILK INDUSTRY CO.,LTD.


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human gut

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: EMG


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: Salmonella bongori


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Bifidobacterium animalis subsp. animalis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bifidobacterium bifidum JCM 1254

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Bifidobacterium pullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: VTEC

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Sweden

ncbi_submitter: DTU


ncbi_isolation_source: Hospital Universitario La Princesa (Madrid)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_organism_name: uncultured Rhodobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Streptomyces sp. NRRL F-2202

ncbi_strain_identifiers: NRRL F-2202

ncbi_submitter: University of Illinois


ncbi_country: Canada: Saint-Chrysostome; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas donghuensis

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI


ncbi_isolate: Human

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Human

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_organism_name: Klebsiella sp. 105384

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Ruian People's Hospital


ncbi_organism_name: Methylocella sp.

ncbi_submitter: Monash University


ncbi_country: USA: WA

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: TX

ncbi_isolation_source: Poultry rinse

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Texas Tech University


ncbi_isolation_source: Raw Goat Milk


ncbi_isolate: metabat2_6730_HET_VAC_hicanu.398 MAG

ncbi_organism_name: Candidatus Scatomorpha merdipullorum

ncbi_strain_identifiers: metabat2_6730_HET_VAC_hicanu.398 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha merdipullorum


ncbi_country: Germany

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: Viet Nam: Northern part of Viet Nam

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Curtobacterium herbarum

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_submitter: Universal Sequencing Corporation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: alternating anaerobic and microareobic bioreactor

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IA

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Escherichia coli KTE16

ncbi_submitter: Broad Institute


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Aliiroseovarius sp. xm-v-209

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Poland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_isolation_source: bronchial washing

ncbi_organism_name: Neisseria sp. HMSC067G12

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Technion-israel institute of technology


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Bacteroides sp. CAG:1060_57_27


ncbi_assembly_name: Lactobacillus reuteri pg-3b

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Institute of Food Researchm


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Cellulomonas sp. UBA6250

ncbi_submitter: University of Queensland


ncbi_country: USA: KS

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Nocardioides sp. NPDC006273

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Hospital Puerta del Mar


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_country: India: Kolkata

ncbi_isolation_source: Human gut

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: South Korea

ncbi_isolation_source: marine algae

ncbi_organism_name: Hoeflea algicola

ncbi_refseq_category: reference genome

ncbi_submitter: Chung-Ang university


ncbi_assembly_name: Rumen uncultured genome RUG729

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_isolation_source: Seto Island Sea

ncbi_organism_name: Sulfitobacter sp. S66

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Rectinema sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: SC


ncbi_country: China: Qingyuan City; Guangondg

ncbi_isolation_source: activated sludge from wastewater treatment plant

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Jinan University


ncbi_country: France

ncbi_isolation_source: human wound

ncbi_organism_name: Clostridium tetani

ncbi_submitter: Aarhus University


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Spain: Madrid

ncbi_isolation_source: blood

ncbi_organism_name: Mycolicibacterium senegalense

ncbi_submitter: Hospital La Paz


ncbi_isolation_source: Spinach

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas at San Antonio


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolate: SPRUCE 668

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 668

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: uncultured Halanaerobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Rhodospirillaceae bacterium UBA1999

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Bacteroides caccae


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_submitter: Sun Yat-Sen University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: South China University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Spirosoma fluviale

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus KINW6048

ncbi_submitter: Broad Institute


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Cytophagaceae bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonadaceae bacterium UBA7296


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Italy: Pozzomaggiore

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_country: Ecuador

ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Micrococcus luteus


ncbi_country: Greece: Piraeus

ncbi_isolation_source: blood

ncbi_submitter: University of Florence


ncbi_submitter: University of Verona, Italy


ncbi_organism_name: Escherichia coli FRIK2001

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Vibrio sp. 661

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Zone where the ocean and a freshwater spring meet at soesokkak; located at Jeju Island

ncbi_organism_name: Roseivivax jejudonensis

ncbi_strain_identifiers: CECT 8625

ncbi_submitter: UVEG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Longimicrobium sp.


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Escherichia coli CHS 77

ncbi_strain_identifiers: CHS 77


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Canada: BC

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CAU Kiel


ncbi_assembly_name: freshwater MAG --- Umea3_bin-1167

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_submitter: sichuan university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Candidatus Palauibacter soopunensis

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy: d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter soopunensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter soopunensis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Paenisporosarcina sp. OV554

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Chile

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Pseudobdellovibrio sp.

ncbi_submitter: EMG


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Pre-slaughter chicken

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


gtdb_type_species_of_genus: t

ncbi_country: Portugal

ncbi_isolation_source: water

ncbi_organism_name: Herminiimonas fonticola

ncbi_submitter: Biocant


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8473

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RIFCSPLOWO2_02_FULL_42_10


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: orthopedic device (ODRI) sonication fluid

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Universidade Federal de Sao Paulo (UNIFESP)


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Micromonospora chersina

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: meat

ncbi_organism_name: Pseudomonas extremorientalis

ncbi_submitter: CEBITEC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridium perfringens


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Brazil: Sao Vicente

ncbi_isolation_source: seafood; marine bivalve

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Nocardioides sp. WV_118_6

ncbi_submitter: SUNY College of Environmental Science and Forestry


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica


ncbi_organism_name: Morganella morganii

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_country: Germany: Karlsruhe

ncbi_isolation_source: fecal sample

ncbi_organism_name: Eggerthella lenta

ncbi_strain_identifiers: MRI-F 36

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA:Walter Reed Army Medical Center

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Miami University


ncbi_country: Belgium

ncbi_isolation_source: Zoo Antwerpen

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary Medicine, Ghent University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: addis ababa university


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_organism_name: Nonomuraea sp. NPDC049309


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Alcanivorax sp.

ncbi_submitter: EMG


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Polaribacter marinivivus

ncbi_submitter: Shantou University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Patulibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Carnobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Halobacteriovorax sp. RT-1-3

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Fibrobacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Poriferihabitaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Roseivirgaceae bacterium


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: Neoaquamicrobium sediminum

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_isolation_source: gut

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces sioyaensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Dialister invisus


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sheffield


ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Washington

ncbi_isolation_source: endo-cervical swab

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: Oregon State University


ncbi_organism_name: Niallia taxi

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Ireland: Wexford

ncbi_isolation_source: soil samples from lysimeters set up in Teagasc; ENVO:00002141

ncbi_submitter: National University or Ireland, Galway


ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Azoarcus taiwanensis

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-670-O17

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Reyranella sp.

ncbi_submitter: University of Oklahoma


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD15050

ncbi_submitter: Broad Institute


ncbi_country: Iraq: Baghdad

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: College of Medicine/Al-Nahrain University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parasutterella excrementihominis


ncbi_country: China

ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Klebsiella sp. GB_Kp058

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli 3.2303

ncbi_submitter: E. coli Reference Center


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1392


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: Enterococcus hirae


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czechoslovakia

ncbi_isolation_source: drinking water

ncbi_organism_name: Budvicia aquatica

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Candidatus Limadaptatus stercoravium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limadaptatus;s__Candidatus Limadaptatus stercoravium


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Minnesota


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bacillus thuringiensis serovar indiana

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar indiana


ncbi_isolation_source: Ragworm alimentary tract

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Nippon veterinary and life sciense university


ncbi_organism_name: Brucella melitensis

ncbi_submitter: University of Pretoria


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: AAFC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfotomaculaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Blastococcus sp.

ncbi_submitter: Colorado State University


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: MICALIS


ncbi_country: Antarctica: Ekho Lake

ncbi_isolation_source: 1 m water sample of Hypersaline; Heliothermal and Meromictic Antarctic Ekho Lake

ncbi_organism_name: Nocardioides aquaticus

ncbi_strain_identifiers: KCTC 9944

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: University of Calgary


ncbi_country: Italy: Verona

ncbi_isolation_source: Taleggio cheese

ncbi_organism_name: Leuconostoc mesenteroides subsp. cremoris

ncbi_submitter: University of Verona


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Oilseed rape rhizosphere

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli C652_10

ncbi_submitter: IGS


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sp. C150

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Mycoplasmoidaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Volcanic Eifel; Andernach

ncbi_isolation_source: groundwater from cold water geyser; filtered on 0.1um pore size filters

ncbi_organism_name: Hydrogenophilus sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_isolation_source: Industrial ABE fermentation

ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: LanzaTech Inc


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: University of Amsterdam


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Methylocystis sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Canada:Iron Curtain Cave; Chilliwack; British Columbia

ncbi_isolation_source: limestone

ncbi_organism_name: Pseudarthrobacter sp. SSS035

ncbi_submitter: University of Ottawa


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: USA: CA

ncbi_isolation_source: white peach

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: China: Shandong

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: Fusobacterium necrogenes

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Freshwater sediment

ncbi_organism_name: Malikia spinosa

ncbi_submitter: Aarhus University


ncbi_organism_name: Helicobacter rodentium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: MiniBAL

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: LBMM 6408

ncbi_submitter: University of the Basque Country


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_submitter: US EPA


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Henan University of Technology


ncbi_organism_name: Clostridium baratii

ncbi_submitter: China Conservation and Research Center for the Giant Panda


ncbi_organism_name: Candidatus Scatomorpha merdavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha merdavium


ncbi_organism_name: Roseburia intestinalis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Mycoplasma capricolum subsp. capricolum

ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capricolum


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Halomonas cupida

ncbi_submitter: Ocean University of China


ncbi_assembly_name: Rumen uncultured genome RUG13078

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Buchnera aphidicola (Diuraphis noxia)

ncbi_submitter: University of Stellenbosch


ncbi_organism_name: uncultured Synergistaceae bacterium


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Chryseobacterium scophthalmum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Soudan Iron Mine; Minnesota

ncbi_isolation_source: brine fluids

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1232

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1232


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas denitrificans (nom. rej.)

ncbi_submitter: University of Washington


ncbi_country: Australia: Adelaide

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Adelaide


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 30 days

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Shantou University


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: Rain forest

ncbi_organism_name: Bifidobacterium sp. ESL0790

ncbi_submitter: University of Lausanne


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: water

ncbi_organism_name: Mariprofundus sp. UBA1571


ncbi_country: India:Assam; Sivsagar

ncbi_isolation_source: Hydrocarbon contaminated soil

ncbi_organism_name: Gordonia amicalis

ncbi_strain_identifiers: BDS-I

ncbi_submitter: Central Muga Eri Research and Training Institute, Central Silk Board, Ministry of Textiles, GoI


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Florida

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Turicibacter sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Streptococcus agalactiae FSL C1-494

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: uncultured Hymenobacter sp.

ncbi_submitter: Spribille Lab


ncbi_country: France: Vosges mountain

ncbi_isolation_source: runoff water

ncbi_organism_name: Pseudomonas sp. Fl5BN2

ncbi_submitter: Universite de LILLE


ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: EMG


ncbi_isolation_source: unknown

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: University of Florida


ncbi_country: Israel: Palestine; Gaza

ncbi_isolation_source: wound

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Georgia


ncbi_country: Chile: Santiago

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: Greece

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: University of Washington


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Massachusetts General Hospital


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: University of Bern


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Fourth Hospital of Hebei Medical University


ncbi_country: Poland: farmland in Jasienowka

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: University of Bialystok


ncbi_country: Canada: Vernon; BC. Kalamalka Seed Orch

ncbi_organism_name: Candidatus Profftia lariciata


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B246;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Tang lab


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal University of Uberlandia


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: United Kingdom

ncbi_isolation_source: Blood


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_submitter: University of Bergen


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_country: India: Anand City; Gujarat State

ncbi_isolation_source: moist soil contaminated with petroleum products

ncbi_organism_name: Dyadobacter fermentans

ncbi_submitter: Sardar Patel University, vallabh vidyanagar, Anand, Gujarat


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Spain: Gran Canaria

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Mycobacterium sp. UNC410CL29Cvi84

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: IMG-taxon 2740892597 annotated assembly

ncbi_country: USA: Harvard Forest; Massachusetts

ncbi_organism_name: Jatrophihabitans sp. GAS493

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Italy: Emilia-Romagna; Parma

ncbi_isolation_source: swab

ncbi_submitter: University of Bologna


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Streptomyces sp. NPDC048290

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: BGI


ncbi_country: Mozambique: Manhica

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Lachnospiraceae bacterium AF92-12TA

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL046PA2

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Klebsiella sp. JB_Kp038

ncbi_submitter: Max Rubner-Institut


ncbi_country: Tunisia: Gafsa

ncbi_isolation_source: phosphogypsum piles

ncbi_organism_name: Bacillus albus

ncbi_strain_identifiers: PG 26

ncbi_submitter: University of Neuchatel


ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: candidate division SR1 bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;x__unclassified Candidatus Absconditabacteria;s__candidate division SR1 bacterium


ncbi_organism_name: Bacteroides clarus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia faecis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Kalamazoo County; MI

ncbi_isolation_source: Gull Lake

ncbi_organism_name: Microcystis aeruginosa G11-04

ncbi_submitter: University of Michigan


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Lebanese American University Microbial Pathogenomics Lab


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Saccharofermentanales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Sutcliffiella horikoshii

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolate: AOP43_B1_surf _bin _3

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP43_B1_surf _bin _3

ncbi_submitter: Genoscope


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Granulosicoccus sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: Streptomyces lydicus


ncbi_organism_name: Anaerostipes hadrus


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Roseburia sp.


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Argentina

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Virgibacillus halotolerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Korea: Ulsan

ncbi_isolation_source: Raw milk

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ulsan National Institute of Science and Technology


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: USA: California; Modesto

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_isolation_source: feces

ncbi_organism_name: Exiguobacterium sp. AM39-5BH

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. AM39-5BH


ncbi_organism_name: Nitrosomonas europaea ATCC 19718


ncbi_country: Peru: Lima

ncbi_isolation_source: Hospital wastewater

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: USA: Riverside; California

ncbi_isolation_source: growing on Rhizopus stolonifer ioslated from strawberry

ncbi_submitter: UCR


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Southern Denmark


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_submitter: University Hospital Basel


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Sweden: Norrkoeping

ncbi_isolation_source: water

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Uppsala University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: addis ababa university


ncbi_country: China: village Bama; guangxi

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: China Agricultural University


ncbi_country: Italy: Bologna

ncbi_isolation_source: blood

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Arachnia sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: CANDO+P Bioreactor

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Northwestern University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Mucispirillum schaedleri


ncbi_assembly_name: IMG-taxon 2681812898 annotated assembly

ncbi_organism_name: Shewanella morhuae

ncbi_strain_identifiers: ATCC BAA-1205

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Burkholderia orbicola

ncbi_submitter: Kvitko Lab


ncbi_country: China: Hubei province

ncbi_isolation_source: nasopharyngeal swabs

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: London; Ontario

ncbi_isolation_source: Research Farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_country: China: Ningxia

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: NingXia Academy of Agricultural and Forestry Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: Antarctica: Ardley Island

ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacterium azizsancarii

ncbi_strain_identifiers: AC

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Microbacterium sp. CBA3102

ncbi_submitter: World Institute of Kimchi


ncbi_country: Canada: Alberta

ncbi_isolation_source: Retail ground beef

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Poland: Miedzyrzec Podolski

ncbi_isolation_source: leachate from fermenter tank of an agricultural biogas plant

ncbi_organism_name: Brevundimonas sp. LPMIX5

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Paraburkholderia sp. J69-2

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: China

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Zhejiang provincial center for disease control and prevention


ncbi_isolation_source: intestine

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus murinus;x__Ligilactobacillus murinus DSM 20452 = NBRC 14221


ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W15995

ncbi_submitter: Broad Institute


ncbi_submitter: Medical Mycology Research Center


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail fresh mint

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: China: Sichuan Province

ncbi_isolation_source: Large-scale pig farm

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. m1-11

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. m1-11


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: Citromicrobium bathyomarinum

ncbi_submitter: Shenzhen University


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: China: Weifang

ncbi_isolation_source: chicken manure

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College London (UCL)


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-0639

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Luteolibacter sp.


ncbi_organism_name: Salmonella sp. NW832

ncbi_submitter: Sichuan University


ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: IMDO WA12L8

ncbi_submitter: VRIJE UNIVERSITEIT BRUSSEL


ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Roseivirgaceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_submitter: Center for Microbial Communities


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Candidatus Brevundimonas phytovorans

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-2747

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Retail fresh oregano

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: Bacillus atrophaeus Detrick-2

ncbi_submitter: Transformational Medical Technologies Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus atrophaeus;x__Bacillus atrophaeus Detrick-2


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Poland: Lublin

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus sp. HMSC077E07

ncbi_submitter: The Genome Institute at Washington University


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Desulfobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: New York

ncbi_isolation_source: whole body homogenate of fruit fly from compost

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Brigham Young University


ncbi_organism_name: Kribbellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Chile: Valparaiso

ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces sp. Vc74B-19

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_assembly_name: Rumen uncultured genome RUG10720

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Hungary

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yale School of Public Health


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sciensano


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Italy: Rio di S. Giacomo; Venice

ncbi_isolation_source: Marine mud

ncbi_organism_name: Desulfobacter hydrogenophilus

ncbi_submitter: Aarhus University


ncbi_country: USA: Chicago; Illinois

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Rhizobium ruizarguesonis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: EMG


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus group sp. BCN149

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN149


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_organism_name: Flavipsychrobacter sp.


ncbi_country: China

ncbi_submitter: West China Secone University Hospital, Sichuan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R915;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: China: Beijing

ncbi_isolation_source: ceacal content

ncbi_organism_name: Muribaculaceae bacterium Z1

ncbi_submitter: Chinese Academy of Science


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3091

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_country: Thailand

ncbi_isolation_source: saline paddy soils

ncbi_organism_name: Rhodopseudomonas palustris

ncbi_submitter: Faculty of Science, Prince of Songkla University


ncbi_country: USA: California

ncbi_organism_name: Campylobacter californiensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Achromobacter sp. UBA5777

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Tianjin

ncbi_isolation_source: SHIME feed

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nankai University


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Candidatus Stahliibacteriota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Stahliibacteriota;x__unclassified Candidatus Stahliibacteriota;s__Candidatus Stahliibacteriota bacterium


ncbi_country: USA: Indian River Lagoon; Florida

ncbi_isolation_source: Cyanobacterial bloom

ncbi_organism_name: Vibrio floridensis

ncbi_submitter: University of Central Florida


ncbi_country: China: Cixi; Zhejiang Province

ncbi_isolation_source: Paddy field soil

ncbi_organism_name: Methylotetracoccus oryzae

ncbi_submitter: Radboud University


ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Paralachnospira;x__environmental samples;s__uncultured Candidatus Paralachnospira sp.


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1417

ncbi_submitter: Broad Institute


ncbi_country: Netherlands

ncbi_isolation_source: disinfectant-free drinking water; site 3

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Glasgow

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_organism_name: Thioalkalivibrio sp. ALRh

ncbi_strain_identifiers: ALRh

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Qingdao

ncbi_isolation_source: Ulva culture

ncbi_organism_name: Algihabitans albus

ncbi_strain_identifiers: HHTR 118

ncbi_submitter: qing dao institute of bioenergy and bioprocess technology


ncbi_country: Mexico

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus sp. oral taxon 431

ncbi_submitter: The University of Texas at Dallas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__unclassified Streptococcus;s__Streptococcus sp. oral taxon 431


ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: Hanoi University of Science, Vietnam National University


ncbi_organism_name: Enterobacter sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Aarhus University


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Shouchella rhizosphaerae

ncbi_strain_identifiers: MER TA 138-1

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Clostridium sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Aggregatilineales bacterium


ncbi_country: USA: Rochester; New York

ncbi_isolation_source: internal stem tissue

ncbi_organism_name: Pantoea sp. RIT-PI-b

ncbi_strain_identifiers: RIT-PI-b

ncbi_submitter: Monash University Malaysia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Salmonella sp. NW124

ncbi_submitter: Sichuan University


ncbi_country: China: Guangdong

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Streptomyces thermocarboxydus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA4215


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Dashan Tin-Zinc Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Methylobacterium sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Arthrobacter sp. NPDC090010

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Microbacterium aurantiacum

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: uncultured Dokdonella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Minnesota


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Veterinary Research Institute


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_organism_name: bacterium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: lake water

ncbi_organism_name: Fibrobacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Enterococcus sp. C14

ncbi_submitter: Northwest A & F University


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_assembly_name: IMG-taxon 2599185237 annotated assembly

ncbi_organism_name: Niastella yeongjuensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Hungatella sp.

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Arkansas

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Northern Illinois University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 1110803248

ncbi_submitter: Broad Institute


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: cephalic recording chamber

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: New York State

ncbi_isolation_source: Black Creek Park

ncbi_organism_name: Enterobacteriaceae bacterium RIT714

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Stahliibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus 04-02981

ncbi_submitter: Robert Koch Institut


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_submitter: Chongqing Medical University


ncbi_country: USA: Oklahoma; Sallisaw; Sallisaw Creek Public Use Area; Robert S. Kerr Reservoir

ncbi_organism_name: Rhodoferax sp. AJA081-3

ncbi_submitter: University of Arkansas


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: zhejiang university


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Methylobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Indian Ocean

ncbi_isolation_source: deep seawater

ncbi_organism_name: Nitratireductor indicus C115

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_country: Chile: Santiago

ncbi_isolation_source: ankle wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_country: South Korea

ncbi_organism_name: Acinetobacter baumannii ATCC 17978

ncbi_submitter: Korea university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii ATCC 17978


ncbi_assembly_name: Draft SP3-LAU Genome

ncbi_country: Lebanon: Byblos

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pyogenes SP3-LAU

ncbi_submitter: Lebanese American University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Xinjiang province

ncbi_organism_name: Streptomyces sp. TRM49041

ncbi_submitter: College of Life Science


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Sphingobacterium luzhongxinii

ncbi_submitter: China CDC


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_country: France

ncbi_isolation_source: starter

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: CIRM-BIA 780

ncbi_submitter: Brigham Young University


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail chicken skin

ncbi_organism_name: Escherichia coli

ncbi_submitter: United States Department of Agriculture


ncbi_organism_name: Paraburkholderia fungorum NBRC 102489

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Huashan Hospitial of Fudan University


ncbi_organism_name: Marinovum algicola

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 226

ncbi_organism_name: Staphylococcus cohnii

ncbi_strain_identifiers: SNUC 1322

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Taiwan: Linkou

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Luteococcus sp. H154


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: metagenome

ncbi_organism_name: Thermodesulfovibrio thiophilus

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Daqing city

ncbi_organism_name: Limnobacter olei

ncbi_submitter: Zhoukou Normal University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: UMCU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus S0460


ncbi_country: Sweden

ncbi_organism_name: Weissella confusa

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolate: X

ncbi_organism_name: Dehalobacterium formicoaceticum

ncbi_strain_identifiers: X

ncbi_submitter: Institute of Applied Ecology, Chinese Academy of Sciences


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL020132

ncbi_submitter: Broad Institute


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Sulfurimonas sp. NW9

ncbi_submitter: Third institute of oceanography, State Oceanic Administration


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: University of Melbourne


ncbi_assembly_name: freshwater MAG --- UppL5_bin-2275

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG241

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Paenibacillus lautus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paraburkholderia sp. RAU6.4a

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: Antarctica: Mackay Glacier regions; Mount Gran

ncbi_isolation_source: mineral soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_country: Brazil

ncbi_organism_name: Xanthomonas melonis

ncbi_submitter: INRA


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: Russia: Moscow

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_organism_name: Clostridiaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Argentina: Buenos Aires

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: EMG


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Anaerolineaceae bacterium UBA6086

ncbi_submitter: University of Queensland


ncbi_country: Malaysia

ncbi_isolation_source: water

ncbi_organism_name: Leptospira selangorensis

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Italy

ncbi_isolation_source: Environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alcaligenes aquatilis


ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: Xiamen University


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: The University of Texas at Dallas


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR