ncbi_organism_name: Microvirga sp.

ncbi_submitter: University of California Berkeley


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_country: China: Haikou

ncbi_isolation_source: coconut milk

ncbi_organism_name: Novacetimonas cocois

ncbi_refseq_category: reference genome

ncbi_submitter: Hainan University

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Moraxellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo AC


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: Okahandja

ncbi_strain_identifiers: Okahandja

ncbi_submitter: Technical University Munich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: uncultured Schwartzia sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Acinetobacter junii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0069R

ncbi_submitter: Broad Institute


ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFMG


ncbi_country: Finland

ncbi_organism_name: Streptococcus halichoeri

ncbi_submitter: Helsinki University


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Pseudoflavonifractor sp.


ncbi_country: Denmark: Aarhus Bay station M5

ncbi_isolation_source: marine sediment

ncbi_organism_name: Calditrichaeota bacterium AABM5.125.24

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Calditrichota;x__unclassified Calditrichota;s__Calditrichaeota bacterium AABM5.125.24


ncbi_organism_name: Anaerococcus sp. Marseille-Q5996

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_name: IMG-taxon 2547132509 annotated assembly

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Burkholderia aenigmatica

ncbi_submitter: NIFDC


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Pacific Ocean: Okinawa Trough

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Exiguobacterium sp. s64

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s64


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Korea: Seoul

ncbi_isolation_source: fish

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_country: United Kingdom

ncbi_isolation_source: soil

ncbi_organism_name: Corallococcus llansteffanensis

ncbi_submitter: Aberystwyth University


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: UNIVERSIDAD NACIONAL DE COLOMBIA


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Escherichia coli CVM N33849PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N33849PS

ncbi_submitter: FDA


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Kenya

ncbi_organism_name: Bacteroidales bacterium UBA6336

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6336


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Taiwan: Taichung

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Deinococcus ficus

ncbi_submitter: National Health Research Institutes


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-7867

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas sp. TE50-2

ncbi_submitter: Bowling Green State University


ncbi_country: Solomon Islands: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


gtdb_type_species_of_genus: t

ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: soil and gravel on top; site at the top of the trail walking to the Pacific Ocean

ncbi_organism_name: Kastovskya adunca ATA6-11-RM4

ncbi_submitter: University of California, Riverside


ncbi_isolation_source: Urine

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Spain

ncbi_isolation_source: Hospital Universitario Lucus Augusti (Lugo)

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: CNAG-CRG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Candidatus Scatomorpha pullicola

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha pullicola


ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Microcystis aeruginosa PCC 9809

ncbi_submitter: Genoscope CEA


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Stahliibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Stahliibacteriota;x__unclassified Candidatus Stahliibacteriota;s__Candidatus Stahliibacteriota bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Acinetobacter sp. UBA6641

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: uncultured Dialister sp.


ncbi_isolation_source: rabbit gut


ncbi_organism_name: Streptococcus agalactiae LMG 15081

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_country: China: Xuzhou

ncbi_isolation_source: sick organs of a dead chicken

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_assembly_name: freshwater MAG --- Loc080925-5-5m_bin-0833

ncbi_organism_name: uncultured Lamprocystis sp.

ncbi_submitter: BILS


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Brazil: Tatui

ncbi_isolation_source: Cecum and rectal contents from Capybaras

ncbi_organism_name: Fusobacterium varium

ncbi_submitter: Brazilian Center for Research in Energy and Materials (CNPEM)


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1035119

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_country: Norway

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ANIWHA


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: Shanghai Hongkou District Center for Disease Control and Prevention


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Raoultella ornithinolytica


ncbi_organism_name: Streptomyces sp. NPDC087440

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_submitter: Nigde Omer Halisdemir University


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: Bacillus altitudinis


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Ignavibacterium sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lachnoanaerobaculum sp.


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Paraprevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Haemophilus sp.


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis NM183

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Clostridium sporogenes

ncbi_strain_identifiers: NCTC 532

ncbi_submitter: University of Surrey


ncbi_organism_name: Serratia liquefaciens ATCC 27592

ncbi_submitter: University of Florida


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Washington


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_assembly_level: Chromosome

ncbi_strain_identifiers: BGSC 4Y1

ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar tochigiensis;x__Bacillus thuringiensis serovar tochigiensis BGSC 4Y1


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Distal colon

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacterium macrobrachii

ncbi_submitter: Chung ang university


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio brasiliensis

ncbi_submitter: NSW Department of Primary Industries


ncbi_isolation_source: Wound secretion

ncbi_organism_name: Enterobacter sp. 50858885

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Paludibacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Denmark: Capital Region of Denmark

ncbi_organism_name: Streptococcus oralis subsp. dentisani

ncbi_submitter: Slagelse Hospital


ncbi_country: Croatia

ncbi_isolation_source: milk and other tissues

ncbi_organism_name: Brucella melitensis

ncbi_strain_identifiers: CVI_STRAIN 7

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Glasgow


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The laboratory of genetics and plant breeding, The National institute of Agronomy of Tunis


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Jiangsu

ncbi_isolation_source: pig

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Acinetobacter johnsonii


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Iran

ncbi_organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens

ncbi_strain_identifiers: CFBP 8822

ncbi_submitter: University of Tehran


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AM34-9LB

ncbi_submitter: BGI


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Microbacterium aoyamense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD7959

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina

ncbi_isolation_source: surveillance swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Leicester


ncbi_country: Canada

ncbi_isolation_source: healthy human stool

ncbi_organism_name: Aliarcobacter butzleri L350

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Israel: Karie Deshe

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Weizmann Institute


ncbi_isolation_source: activated sludge

ncbi_organism_name: Arthrobacter sp. M6


ncbi_country: Japan

ncbi_isolation_source: drain tip

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho university


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: Human saliva

ncbi_organism_name: Stomatobaculum longum

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Candidatus Faecivicinus avistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Faecivicinus;s__Candidatus Faecivicinus avistercoris


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NPDC087843

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Soil

ncbi_organism_name: Pseudomonas sp. Bi123

ncbi_submitter: University of Dundee


ncbi_country: Thailand

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Eisenbergiella porci

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1344

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: University of Birmingham


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Japan: Tateyama; Chiba prefecture

ncbi_isolation_source: Sea anemone

ncbi_organism_name: Thalassomonas actiniarum

ncbi_submitter: University of the Western Cape


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: BGI


ncbi_country: USA: IN

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Kiloniellales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Streptomyces sp. NPDC052079

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Germany: Berlin

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: stable manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wageningen University & Research


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-0720

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad de Guadalajara


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: China: Jinhua

ncbi_isolation_source: puncture fluid

ncbi_submitter: Jinhua Central Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: India: Alang-sosiya; Gujarat

ncbi_isolation_source: estuarine water

ncbi_organism_name: Neopusillimonas aestuarii

ncbi_submitter: National Centre for Cell Science


ncbi_organism_name: Campylobacter sp. RM5063

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Israel

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Kyoto University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: MAMI


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: The University of Tokyo


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. ZJJH19_0126

ncbi_submitter: Zhejiang university


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Candidatus Onthomorpha sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Onthomorpha;x__unclassified Candidatus Onthomorpha;s__Candidatus Onthomorpha sp.


ncbi_organism_name: uncultured Sphingobium sp.


ncbi_organism_name: Lentihominibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Albidovulum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: North-West University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. A1C1

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology (KRIBB)


ncbi_country: Kuwait

ncbi_isolation_source: Tracheal Secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kuwait University


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium ruanii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: unknown

ncbi_organism_name: Thermodesulfovibrionia bacterium

ncbi_submitter: UNIVERSITY OF JENA


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_organism_name: Clostridium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Halomonas sp. MES3-P3E

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T51001

ncbi_submitter: Broad Institute


ncbi_country: Costa Rica:Cuenca Murcielago

ncbi_isolation_source: Cuenca Murcielago travertine

ncbi_organism_name: Tepidimonas sp. UBA997

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Tepidimonas;x__unclassified Tepidimonas;s__Tepidimonas sp. UBA997


ncbi_organism_name: Muribaculaceae bacterium


ncbi_strain_identifiers: A. baumannii

ncbi_submitter: Seoul National University Children's Hospital


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Aarhus University


ncbi_country: Colombia: Bolivar

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella sp. S016_62598

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acidisphaera sp.


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Beijing

ncbi_isolation_source: ceacal content

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Chinese Academy of Science


ncbi_organism_name: Neobacillus sp.

ncbi_submitter: Indian Institute of Technology Kharagpur


ncbi_organism_name: uncultured Ottowia sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Roseiflexus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pantoea anthophila

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Argentina

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: Hot spring sample

ncbi_organism_name: Acidithiobacillus sp. AMEEHan

ncbi_strain_identifiers: AMEEHan

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Treponema sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Marmota baibacina

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Mariane macroalgea Gelidium sp.


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: fermentation

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus sp. C35

ncbi_submitter: Northwest A & F University


ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Xylanibacter rodentium


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Stockholm University


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas sp. GD04064

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: Stanford University


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Fructilactobacillus;s__Fructilactobacillus lindneri;x__Fructilactobacillus lindneri DSM 20690 = JCM 11027


ncbi_country: Guinea-Bissau

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_country: Singapore

ncbi_isolation_source: hand hygiene sink aerator of the neonatal ICU ward of National University Hospital

ncbi_organism_name: Elizabethkingia anophelis NUH11

ncbi_submitter: SCELSE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Portugal

ncbi_isolation_source: Mussels

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: enrichment of activated sludge from Daejeon WWTP

ncbi_organism_name: Oryzomicrobium sp.

ncbi_submitter: KAIST


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Ornithinibacillus xuwenensis

ncbi_submitter: Anhui University of Chinese Medicine


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces antarcticus

ncbi_submitter: Ondokuz Mayis University


ncbi_country: USA: South Carolina

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: Israel

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: South Korea: Seoul

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: China: Yaan

ncbi_isolation_source: spice

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_country: China: Sichuan

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: The East China Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. OM06-36AC

ncbi_submitter: BGI


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Escherichia coli O157:H7 str. SS17

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. SS17


ncbi_organism_name: Salmonella sp. NW1217

ncbi_submitter: Sichuan University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Louisiana

ncbi_isolation_source: trachea

ncbi_organism_name: Chromobacterium violaceum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: South Korea:Gyeonggi-do; Seongnam-si

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Korean Collection for Type Culture, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology


ncbi_country: South Korea

ncbi_isolation_source: micro-algae

ncbi_organism_name: Methylibium sp. Pch-M

ncbi_strain_identifiers: Pch-M

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: United Kingdom

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans G123

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces sp. NBC_01653


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antwerp


ncbi_organism_name: uncultured Armatimonadia bacterium


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Citrobacter youngae

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Variovorax sp. 22077

ncbi_submitter: Yantai University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Kroppenstedtia sanguinis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_isolate: GZCH

ncbi_organism_name: Candidatus Profftella armatura

ncbi_strain_identifiers: GZCH

ncbi_submitter: School of Life Sciences and Food Engineering

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Betaproteobacteria;o__;f__;g__Candidatus Profftella;s__Candidatus Profftella armatura

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Profftella;s__Candidatus Profftella armatura


ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: Badan Riset dan Inovasi Nasional


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Fujian Medical University


ncbi_assembly_name: IMG-taxon 2663762776 annotated assembly

ncbi_organism_name: Pseudomonas linyingensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Switzerland

ncbi_isolation_source: CSF

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia

ncbi_isolation_source: canned tomatoes

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: SRCAMB


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Canada: British Columbia

ncbi_isolation_source: human

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: China: Heilongjiang

ncbi_isolation_source: surface soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Guangzhou Institute of Geochemistry, Chinese Academy of Sciences


ncbi_country: USA: Honolulu

ncbi_organism_name: Xanthomonas sp. D-36-1

ncbi_submitter: Wageningen University & Research


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: USA: Rochester

ncbi_isolation_source: face mask

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Rochester Institute of Technology


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Aarhus University


ncbi_country: Russia: Moscow

ncbi_isolation_source: throat swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Secone University Hospital, Sichuan University


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.755 MAG

ncbi_isolate: bin.755 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Rhodothermaeota bacterium MED-G12

ncbi_strain_identifiers: bin.755 MAG

ncbi_submitter: IDAEA-CSIC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;x__unclassified Rhodothermota;s__Rhodothermaeota bacterium MED-G12


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: Malaysia

ncbi_isolation_source: Waterfall

ncbi_organism_name: Chromobacterium piscinae

ncbi_submitter: UNIVERSITY OF MALAYA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: EMG


ncbi_organism_name: Tepidimicrobium xylanilyticum

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Arcobacter cryaerophilus gv. pseudocryaerophilus

ncbi_strain_identifiers: LEO 65

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_country: Germany: Ploen

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis WI09

ncbi_submitter: Max-Planck-Institute for Evolutionary Biology


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: Shenzhen; Longgang

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Coralliovum pocilloporae

ncbi_strain_identifiers: SCSIO 12594

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_organism_name: Streptococcus sp. 27098_8_109

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D9_bin-0574

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Collierbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;x__unclassified Candidatus Collierbacteria;s__Candidatus Collierbacteria bacterium


ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: USDA


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Pantoea brenneri

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodothermaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_assembly_name: Rumen uncultured genome RUG11259

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0029

ncbi_submitter: Broad Institute


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_country: China: Xinjiang

ncbi_isolation_source: soil

ncbi_organism_name: Deinococcus wulumuqiensis R12

ncbi_submitter: NANJING TECH UNIVERSITY


ncbi_country: USA:New Jersey; Wharton State Forest; Hawkins Bridge

ncbi_isolation_source: gut dissection

ncbi_organism_name: Mesoplasma whartonense

ncbi_submitter: University of Connecticut


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Pivers Island (Duke Marine Lab); NC

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_country: China: Yinshan Lead-Zinc Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Australia: Western Australia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: Colombia: Bucaramanga

ncbi_submitter: Universidad El Bosque


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Igbinedion University Okada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Cellulosimicrobium cellulans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: University at Buffalo


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Prevotella sp.

ncbi_submitter: SAHMRI


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: France: Marseille

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Institut hospitalo-universitaire en maladies infectieuses de Marseillee


ncbi_isolation_source: derived from VB111

ncbi_submitter: Universite de Sherbrooke

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_country: Sweden

ncbi_isolation_source: sekret

ncbi_organism_name: Mycobacterium tuberculosis BTB09-453

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_isolation_source: oxic water above sulfide containing lake sediment

ncbi_organism_name: Pandoraea norimbergensis

ncbi_submitter: University of Malaya


ncbi_organism_name: Enterococcus sp. E4-220

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Dhaka


ncbi_country: Kazakhstan: West Kazakhstan region

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_country: Turkey: Mardin; Midyat

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Egypt: Wadi Natrun

ncbi_isolation_source: saline lake

ncbi_organism_name: Halorhodospira sp. 9621

ncbi_submitter: Bellevue University


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: feces

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Microbacterium algeriense

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Kocuria sp.


ncbi_country: Italy: Apulia; Bari

ncbi_isolation_source: blood

ncbi_submitter: University of Bari "Aldo Moro", Bari, Italy


ncbi_isolation_source: metagenome

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_submitter: German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Semmelweis University


ncbi_organism_name: Bifidobacterium bifidum


ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Flagellimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA)


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: New Zealand: South Island; Marlborough; Capsize Point

ncbi_isolation_source: marine sponge

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: VICTORIA UNIVERSITY WELLINGTON


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Synergistales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: University of Alberta


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Birmingham


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Enterobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Rhode Island


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx20878

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Comenius University Science Park


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chthonomonas sp. UBA5591

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolate: metabat2_coassembly_bwa.302 MAG

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.302 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Candidatus Kaftiobacterium secundum

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Kaftiobacterium;s__Candidatus Kaftiobacterium secundum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Kaftiobacterium;s__Candidatus Kaftiobacterium secundum


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: ICA - AGROSAVIA


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Ruminococcus sp. CAG:579

ncbi_submitter: DTU


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: UAE University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Costa Rica

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Deep-Sea Bioresource Research Group , Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Vibrio sp. Vb2321

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: United Kingdom Health Security Agency


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1092

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Zymo Research Corporation


ncbi_organism_name: Rhodomicrobiaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_country: Chile

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universidad Autonoma de Chile


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W12586

ncbi_submitter: Broad Institute


ncbi_country: Malaysia

ncbi_isolation_source: respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_country: United Kingdom:England

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Korea: Sunchang

ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Kitasatospora kazusensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Streptomyces collinus

ncbi_strain_identifiers: SQ

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cpo126

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Acholeplasma laidlawii

ncbi_submitter: Jiangsu Academy of Agricultural Sciences


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paraburkholderia terricola

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: isolated from patient

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_country: USA: Brewerton; New York

ncbi_organism_name: Wolbachia endosymbiont of Nasonia oneida

ncbi_submitter: Auburn University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_submitter: INRA


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: First Affiliated Hospital of Guangzhou Medical University,Guangzhou Institute of Respiratory Health,


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium sp. HMSC078H07

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC059994

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Comamonas sp. lk

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Phocaeicola plebeius


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F54467

ncbi_submitter: Broad Institute


ncbi_organism_name: Saccharomonospora azurea


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: ear

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Ekaterinburg

ncbi_isolation_source: lungs

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium RIFOXYC1_FULL_39_21


ncbi_country: India: Mumbai

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Christian Medical College


ncbi_isolation_source: metagenome

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: EMG


ncbi_country: South Korea: Seoul

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Korea: Gwangju

ncbi_isolation_source: water

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: World Institute of Kimchi


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parasutterella sp.


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces sp. TLI_171

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sporolactobacillus sp.

ncbi_submitter: EBI


ncbi_country: USA: Utah

ncbi_isolation_source: The Great Salt Lake

ncbi_organism_name: Salinivibrio sp. EAGSL

ncbi_strain_identifiers: EAGSL

ncbi_submitter: University of Utah


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Enterobacter chuandaensis

ncbi_submitter: University of Zurich


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Neisseria sp. P0018.S001

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_country: China: The East China Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: uncultured Jannaschia sp.


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Rhizobium sp. EC-SD404

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_country: France

ncbi_isolate: clinical strain from anonymous patient from Besancon hospital

ncbi_isolation_source: blood culture

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: INRA Toulouse


ncbi_organism_name: uncultured Porticoccus sp.


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russia Research Anti-Plague Institute "Microbe"


ncbi_organism_name: Paenibacillus larvae subsp. pulvifaciens

ncbi_submitter: CT Agric Expt Station


ncbi_country: Mexico: Mexico City

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Oman

ncbi_organism_name: Fluoribacter dumoffii

ncbi_submitter: Danish Technical University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Anaeroplasma bactoclasticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anaerolineaceae bacterium


ncbi_isolation_source: Meat semi-finished products

ncbi_organism_name: Listeria innocua

ncbi_submitter: Institute of Experimental Medicine


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Chicago


ncbi_country: Japan

ncbi_organism_name: Williamsia maris


ncbi_organism_name: Hoylesella saccharolytica


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: Deciduous woodland; University campus

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Final Effluent)

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Australia: Great Barrier Reef

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: EMG


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: SWINE CARCASS

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna


ncbi_country: Lebanon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: lebanese american university


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA5170


ncbi_isolate: metabat2_coassembly_bwa.733 MAG

ncbi_strain_identifiers: metabat2_coassembly_bwa.733 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Cyanobacteria bacterium P01_E01_bin.35

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_E01_bin.35


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rectinema sp.

ncbi_submitter: University of Iowa


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_country: China: Hebei

ncbi_isolation_source: AHPND infected Litopenaeus vannamei

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Yellow Sea Fisheries Research Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: National Autonomous University of Mexico


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Candidatus Pelagibacter sp. Uisw_121

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. Uisw_121


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. MPR-R5A

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Milk powder plant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University of Zurich


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_submitter: Liaocheng University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: ground beef

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Microbispora rosea subsp. rosea

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MO

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_submitter: Institute of Marine Research


ncbi_country: Spain: Asturias

ncbi_submitter: University of Oviedo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Heyndrickxia faecalis


ncbi_isolation_source: Organic material

ncbi_organism_name: Rhodococcus sp. ACPA4

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. ACPA4


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Kosakonia cowanii JCM 10956 = DSM 18146

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kosakonia;s__Kosakonia cowanii;x__Kosakonia cowanii JCM 10956 = DSM 18146


ncbi_country: Mexico

ncbi_isolation_source: Heads

ncbi_organism_name: Stenotrophomonas sp. S41

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Vibrio sp. Vb2911

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Uzbekistan: Tashkent

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Methylophaga sp.


ncbi_assembly_name: DEMHIR

ncbi_isolate: DEMHIR

ncbi_organism_name: Candidatus Doolittlea endobia

ncbi_strain_identifiers: DEMHIR

ncbi_submitter: UNIVERSITY OF SOUTH BOHEMIA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Doolittlea;s__Candidatus Doolittlea endobia


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Silvanus unidentatus


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Monash University


ncbi_organism_name: Emcibacter sp. SYSU 3D8

ncbi_strain_identifiers: SYSU 3D8

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: EMG


ncbi_isolation_source: Dar es Salaam

ncbi_organism_name: Escherichia coli

ncbi_submitter: Muhimbili University of Health and Allied Sciences


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: stool

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Paenibacillus sp. FSL R5-0378

ncbi_submitter: Penn State


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus VRS3a


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Sphingomonas sp. RB3P16

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Istanbul University


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: University of Parma


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: BfR L41

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Yersinia pestis 620024

ncbi_submitter: Beijing Genomics Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis OFXR-21


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_assembly_name: IMG-taxon 2693429823 annotated assembly

ncbi_organism_name: Flavobacterium sp. CF108

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Comamonadaceae bacterium


ncbi_country: Japan

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans NMT4863

ncbi_submitter: Cornell University


ncbi_country: Australia: Brisbane

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Serratia nevei

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: cystic fibrosis

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: LM-UGent


ncbi_country: USA: IN

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Sphingomonadales bacterium


ncbi_country: China: The Yellow Sea

ncbi_organism_name: Flavivirga rizhaonensis

ncbi_submitter: Jining Medical University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Synechococcaceae bacterium WB8_1B_136

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Rhodovibrionaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Third Institute of Oceanography


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Borreliella lanei

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfuromonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Beijing

ncbi_isolation_source: cooked food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Austria: Salzburg; Leopolskronerweiher

ncbi_isolation_source: freshwater pond

ncbi_organism_name: Rhodoluna limnophila

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Alistipes communis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Argentina

ncbi_isolation_source: water of Socompa Lake

ncbi_organism_name: Salinivibrio socompensis S35

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Methylophilus sp. Leaf459

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Candidatus Kurthia intestinigallinarum


ncbi_country: Russia

ncbi_isolation_source: pea rhizosphere soil

ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: University of Tyumen


ncbi_country: China: Shaanxi

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: China: Zhejiang

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Synergistaceae bacterium


ncbi_strain_identifiers: LT2 KO STM4426

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Enterococcus faecalis EnGen0366

ncbi_submitter: Broad Institute


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_assembly_name: IMG-taxon 2524614863 annotated assembly

ncbi_organism_name: Maledivibacter halophilus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium