ncbi_country: Slovenia: near Marine Biology Institute; Piran

ncbi_isolate: LMB bulk15N

ncbi_isolation_source: few separated cells obtained by FACS sorting: DNA amplified by MDA; pinacoderm

ncbi_strain_identifiers: LMB bulk15N

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Synechococcaceae;g__Synechococcus;s__Candidatus Synechococcus spongiarum;x__Candidatus Synechococcus spongiarum LMB bulk15N


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: China: Jiangsu

ncbi_genome_representation: full

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest Medical University


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The National Research Center for the Working Environment


ncbi_assembly_level: Scaffold

ncbi_country: USA

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Mexico

ncbi_isolation_source: feces (Mus musculus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: marine cold seep in Kagosima Bay

ncbi_submitter: Korea Institute of Ocean Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Gammaproteobacteria bacterium (ex Lamellibrachia satsuma)


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Photobacterium damselae

ncbi_submitter: NSW Department of Primary Industries


ncbi_country: France: Tours

ncbi_isolation_source: mutant from a clinical S12/111 isolate

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


gtdb_representative: t

ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: CAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_assembly_name: Sphingobium sp Z007 rep B with predator

ncbi_organism_name: Sphingobium sp. Z007

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_organism_name: Neobacillus niacini

ncbi_submitter: Kinki University


ncbi_organism_name: bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: skin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: pus

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AMR research center, National Institute of Infectious Diseases


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- D1_bin-121

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto de Quimica


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Allorhizobium sp. CTOTU49807


ncbi_country: Pacific Ocean: Solomon Sea

ncbi_organism_name: Pseudoalteromonas rubra

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Rummeliibacillus suwonensis

ncbi_refseq_category: reference genome

ncbi_submitter: KRIBB

ncbi_type_material_designation: assembly from type material


ncbi_submitter: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikro


ncbi_country: Czech Republic

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: Germany

ncbi_submitter: Robert Koch Institute


ncbi_country: Russia: Moscow

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA

ncbi_organism_name: Escherichia coli FDA506

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_submitter: University of Alberta


ncbi_country: Taiwan: Hospital

ncbi_isolation_source: plasma

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: Domesticated livestock

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: field land

ncbi_organism_name: Epilithonimonas zeae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces sp. PvP037

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Zhejiang

ncbi_isolation_source: rectum

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: cold seep

ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: kefir

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: KR

ncbi_submitter: SysMilk


ncbi_organism_name: Candidatus Tenderia sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Tenderiales;f__Candidatus Tenderiaceae;g__Candidatus Tenderia;x__unclassified Candidatus Tenderia;s__Candidatus Tenderia sp.


ncbi_assembly_name: Rumen uncultured genome RUG11444

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Department of Biosecurity PCL3


gtdb_type_species_of_genus: t

ncbi_isolation_source: rice field ditch

ncbi_organism_name: Beggiatoa alba B18LD

ncbi_submitter: JGI


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Goldcoast


ncbi_isolation_source: human gut


ncbi_submitter: KORDI/Inha Univ

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;s__Candidatus Puniceispirillum marinum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;s__Candidatus Puniceispirillum marinum;x__Candidatus Puniceispirillum marinum IMCC1322


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Nigeria

ncbi_isolation_source: environmental

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Igbinedion University Okada Edo state Nigeria


ncbi_country: USA: Michigan; Powell Township; Upper Pine Lake

ncbi_isolation_source: water

ncbi_organism_name: Microbacterium sp. HMWF026

ncbi_submitter: University of Illinois


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Skin and soft tissue

ncbi_submitter: Monash University


ncbi_country: USA: Oregon

ncbi_isolation_source: aged Cheddar

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Oregon State University


ncbi_assembly_name: IMG-taxon 2639762619 annotated assembly

ncbi_organism_name: Pseudomonas jessenii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Lachnospira sp. UBA4346

ncbi_submitter: University of Queensland


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pirellula sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Macellibacteroides fermentans

ncbi_submitter: UNIVERSITY OF NORTH BENGAL


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Tepidiphilus sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Bifidobacterium catenulatum subsp. catenulatum

ncbi_submitter: Yakult Central Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Laboratorio de Microbiologia Hospitalaria y de la Comunidad


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Ireland: Castlemaine Harbour

ncbi_isolation_source: haemolymph

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Cefas


ncbi_country: Canada: Vancouver

ncbi_isolation_source: stool of a ~3 month-old infant on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Department of Microbiology, Tokyo Metropolitan Institute of Public Health


ncbi_country: USA

ncbi_organism_name: Roseburia faecis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Ruthenibacterium sp.


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom: Scotland; Aberdeen Royal Infirmary

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Aberdeen


ncbi_organism_name: Amphiplicatus metriothermophilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: IMG-taxon 2675903049 annotated assembly

ncbi_organism_name: Prauserella marina

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli Bd5610_99

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Sellimonas sp.

ncbi_submitter: Biomin Research Center


ncbi_country: South Korea

ncbi_isolation_source: freshwater

ncbi_organism_name: Zwartia vadi

ncbi_submitter: Inha University


ncbi_isolate: Alorena table olives

ncbi_isolation_source: Fermented Alorena table olives

ncbi_organism_name: Lactiplantibacillus pentosus MP-10

ncbi_strain_identifiers: Alorena table olives

ncbi_submitter: University of Jaén


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 102

ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: SNUC 47

ncbi_submitter: University of Calgary


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Africa:Brits

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: feces

ncbi_organism_name: Coprobacillus sp. AM28-15LB

ncbi_submitter: BGI


ncbi_assembly_level: Chromosome

ncbi_country: Brazil: Paranapiacaba; Sao Paulo

ncbi_isolation_source: iron water pipe

ncbi_organism_name: Brasilonema sennae CENA114

ncbi_submitter: Sao Paulo State University (UNESP)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Scytonemataceae;g__Brasilonema;x__Bromeliae group (in: Brasilonema);s__Brasilonema sennae;x__Brasilonema sennae CENA114


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: EMG


ncbi_organism_name: Pandoraea pnomenusa

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Ruminococcus intestinalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: USA: Georgia

ncbi_isolation_source: week A5 calf 104 isolate 3

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: Colombia: Medellin

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: South Korea: Seoul

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella sp. FORC89

ncbi_submitter: Seoul National University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Washington


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Anaerostipes hadrus


ncbi_country: China: Zhangye; Gansu

ncbi_isolation_source: Handmade yogurt

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Micromonospora sagamiensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of KwaZulu Natal


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Alkalihalobacillus sp. NPDC078480

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Teagasc


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Iowa


ncbi_isolation_source: Tea plantation soil

ncbi_organism_name: Paraburkholderia caffeinilytica

ncbi_submitter: GHENT UNIVERSITY


ncbi_assembly_name: Rumen uncultured genome RUG10387

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_isolation_source: Pus

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Christian Medical College


ncbi_country: Slovenia

ncbi_isolation_source: Raw bulk milk

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DGA CBRN Defence Center


ncbi_organism_name: Streptomyces sp. NPDC056411


ncbi_country: USA: California; Eel River; South Fork Eel River near Piercy

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Oscillatoriales cyanobacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: USA: Milwaukee

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Gilvimarinus japonicus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: China

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces turgidiscabies Car8

ncbi_submitter: JCVI


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_assembly_name: Rumen uncultured genome RUG14718

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Moscow

ncbi_isolation_source: feces

ncbi_submitter: RCPCM


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiohalobacter sp.

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Roseitalea sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Lentisphaerales bacterium

ncbi_submitter: Stockholm University


ncbi_country: Canada: Alberta

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Lethbridge Research and Development Centre


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Wilmar International Limited


ncbi_country: China: Qingdao

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Ocean University of China


ncbi_organism_name: Curtobacterium sp. B18

ncbi_submitter: Kazusa DNA Research Institute


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: marine

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Mesoaciditoga sp.


ncbi_organism_name: uncultured Marinilabiliaceae bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. CQ23WZ0286SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_strain_identifiers: 64w1 winter

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_organism_name: Bacteroides uniformis


ncbi_isolate: AOP42_C1_surf _bin _27

ncbi_organism_name: Microbacterium sp.

ncbi_strain_identifiers: AOP42_C1_surf _bin _27

ncbi_submitter: Genoscope


ncbi_organism_name: Faecalispora jeddahensis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Brazil: Braganca

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Ureibacillus sp. MALMAid1270

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Marinobacter adhaerens

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Tenericutes bacterium GWF2_57_13

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__unclassified Mycoplasmatota;s__Tenericutes bacterium GWF2_57_13


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: municipal wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Gemmatimonas phototrophica

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S134

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S134


ncbi_organism_name: Corynebacterium diphtheriae


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-0696

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Capnocytophaga gingivalis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Fimbriiglobus sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pedobacter frigiditerrae

ncbi_submitter: Branch for Bioresources of the Fraunhofer IME


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_organism_name: Shuttleworthella satelles


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Southern Atlantic

ncbi_organism_name: Prochlorococcus sp. AH-716-K03

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University College London (UCL)


ncbi_country: Puerto Rico: Cabo Rojo

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Xanthomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_isolation_source: Single-strain biofilm on Detroit 562 cells

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Emory University


ncbi_country: USA: Colorado

ncbi_organism_name: Rhodococcus sp. LBL1

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. LBL1


ncbi_country: USA: Lake Michigan College; Berrien County; Michigan

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Chicago


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Jagannath University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Thailand

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_country: Russia: Barents Sea; Kolguev Island

ncbi_isolation_source: sea water

ncbi_organism_name: Thalassolituus oleivorans

ncbi_submitter: Institute of Genetics and Selection of Industrial Microorganisms


ncbi_assembly_name: Escherichia coli ST156 strain KCRI-82

ncbi_isolation_source: diarrhoeal stool

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_country: China: Guangdong

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: South China Agricultural University


ncbi_country: Australia: North Queensland

ncbi_organism_name: Brucella sp. NF 2653

ncbi_submitter: Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;x__unclassified Brucella;s__Brucella sp. NF 2653


ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolate: metabat2_6755_HET_CTRL_hicanu.359 MAG

ncbi_organism_name: Lachnoclostridium sp. An118

ncbi_strain_identifiers: metabat2_6755_HET_CTRL_hicanu.359 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China:Zhejiang province

ncbi_isolation_source: probitic products

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Zhejiang Tianke High Technology Development Co.Ltd.


ncbi_country: Russia: Rostov-on-Don

ncbi_isolation_source: sputum

ncbi_submitter: SRCAMB


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Succinatimonas sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Denmark

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Paraburkholderia kururiensis

ncbi_strain_identifiers: HAMBI 2494

ncbi_submitter: University of Turku


ncbi_country: Australia

ncbi_isolation_source: gut biopsy from patient with ulcerative colitis

ncbi_submitter: The Commonwealth Scientific and Industrial Research Organisation (CSIRO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis;x__Mycobacterium avium subsp. paratuberculosis Pt164


ncbi_country: China: hot spring of Tibet

ncbi_isolation_source: sediment environment

ncbi_organism_name: Thermaurantiacus tibetensis

ncbi_strain_identifiers: SYSU G02173

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0350


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Gammaproteobacteria bacterium UBA4421

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Hole 1301A; eastern flank of the Juan de Fuca Ridge

ncbi_isolation_source: subseafloor olivine biofilm

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Marine Biological Laboratory


ncbi_country: Egypt

ncbi_organism_name: Brucella abortus 63/130


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: gut

ncbi_organism_name: Clostridiales bacterium


ncbi_isolation_source: tissues great toe

ncbi_organism_name: Enterococcus sp. HMSC066C04

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: University of California Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_organism_name: Collinsella sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Algeria

ncbi_isolation_source: river water

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: IHU Mediteranee Infection


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Streptomyces sp. WI04-05A

ncbi_submitter: Oregon State University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D10_bin-0178

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Ruminobacter sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Mycobacterium simiae

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: JiLin Agricultural Science and Technolog


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Xiamen University


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Nocardia sp. NBC_01388

ncbi_submitter: Technical University of Denmark


ncbi_isolate: AOP8_B2_surf _bin _1

ncbi_organism_name: Providencia sp.

ncbi_strain_identifiers: AOP8_B2_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: South Korea: Yellow Sea

ncbi_isolation_source: Sea water

ncbi_organism_name: Marinomonas hwangdonensis

ncbi_submitter: Shanghai Ocean University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG


ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center


ncbi_country: China: Shenzhen

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: BGI


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran


ncbi_country: USA: Columbia; MO

ncbi_submitter: Cancer Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Micromonospora sp. L5

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: rumen

ncbi_organism_name: Butyrivibrio sp. DSM 10294

ncbi_submitter: Ben Gurion University of the Negev


ncbi_organism_name: Peptoniphilus harei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: Burkholderia contaminans

ncbi_strain_identifiers: CAMPA 315

ncbi_submitter: Universidad Nacional de La Plata


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Shigella flexneri K-227

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Murimonas intestini

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Christensenella sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Brachybacterium alimentarium

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Cambodia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Ehrlichia ruminantium

ncbi_strain_identifiers: Crystal Springs

ncbi_submitter: Graduate School of Veterinary Medicine Hokkaido University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus agalactiae CCUG 37738

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Woeseia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Kentucky

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: University of Kentucky

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA

ncbi_isolation_source: Sore

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: freshwater MAG --- AM-2014-D4_bin-376

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Belgium

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: LHUB-ULB


ncbi_organism_name: Clostridium sp. ASBs410

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Fort Sam Houston

ncbi_isolation_source: wound

ncbi_submitter: Miami University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Southwest University


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Helicobacter typhlonius


ncbi_country: China: Jiangsu

ncbi_isolation_source: urine

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: USA: Wisconsin

ncbi_isolation_source: cheese

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Wisconsin-Madison and Utah State University


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: epithelial cells

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: Oregon State University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: farmed pheasant

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jagiellonian University


ncbi_organism_name: Bacteroides xylanisolvens


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Candidatus Ventrimonas merdavium

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprobacillus sp.

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria weaveri

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: Peritoneal fluid

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: France

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Paraburkholderia bannensis

ncbi_submitter: University of Reims


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Cytophagia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;x__environmental samples;s__uncultured Cytophagia bacterium


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: XYQ

ncbi_submitter: Enze Hospital


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_organism_name: Desulfurella sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Gluconobacter cerinus

ncbi_submitter: Teagasc


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_organism_name: Hyphomonas atlantica

ncbi_submitter: Tang lab


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Turicibacter sp.


ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas lutea

ncbi_submitter: INRAE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Allofournierella massiliensis

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hangzhou First People's Hospital


ncbi_country: USA: Lake Alfred; Florida

ncbi_isolation_source: Drosophila s2 cells

ncbi_organism_name: Wolbachia endosymbiont of Diaphorina citri

ncbi_submitter: University of Florida


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United Kingdom Health Security Agency


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Kiritimatiellales bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Malta

ncbi_organism_name: Brucella melitensis B115

ncbi_submitter: Broad Institute


ncbi_country: India

ncbi_isolation_source: Cerebrospinal fluid

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Switzerland

ncbi_isolation_source: Gruyere

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_country: France: APHM

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Wolbachia pipientis wBol1-b

ncbi_submitter: UQ


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_01_FULL_39_220


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_country: China: Yangzhou

ncbi_isolation_source: feces from a porcine slaughterhouse

ncbi_organism_name: Enterobacter sp. TF5

ncbi_submitter: YangZhou university


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Williamsia sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Pseudomonas avellanae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WA

ncbi_organism_name: Neisseria elongata subsp. glycolytica

ncbi_submitter: University of Washington


ncbi_country: Indian Ocean

ncbi_isolation_source: Copepod

ncbi_organism_name: Pseudoalteromonas piscicida

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Tateyamaria sp.


ncbi_assembly_name: Rumen uncultured genome RUG13818

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Candidatus Avelusimicrobium intestinale

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces rimosus subsp. rimosus

ncbi_strain_identifiers: NRRL WC-3874

ncbi_submitter: University of Illinois


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: maybe soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: Australia

ncbi_isolation_source: Casey Hospital

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_isolation_source: human feces metagenome


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: New Zealand

ncbi_organism_name: Pseudomonas syringae pv. pisi

ncbi_submitter: University of the West of England

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. pisi


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000680


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: USA: South Dakota

ncbi_isolation_source: cecum

ncbi_organism_name: Bacteroidales bacterium SW299

ncbi_submitter: South Dakota State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium SW299


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: The General Hospital of the People's Liberation Army


ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Acidimicrobium ferrooxidans DSM 10331

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Slovenia

ncbi_isolation_source: animal

ncbi_organism_name: Brucella suis bv. 4

ncbi_submitter: Croatian Veterinary Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella suis;x__Brucella suis bv. 4


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexi bacterium HGW-Chloroflexi-3

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium HGW-Chloroflexi-3


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Streptococcus suis YS66

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_organism_name: Nocardia sp. NPDC050799

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu

ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China

ncbi_isolation_source: sucrose solution

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: GSICC 31207

ncbi_submitter: Gansu Academy of Sciences


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: Corynebacterium sp. AOP34-AQ2-28

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of Waterloo


ncbi_country: Brazil: Belem

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Switzerland: Dagmersellen

ncbi_isolation_source: stream surface water

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Brevibacillus borstelensis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Streptomyces smyrnaeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Faecalibacillus sp. MSK20_93

ncbi_submitter: University of Chicago


ncbi_organism_name: Paenimyroides viscosum


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Haemophilus sp. HN_Hi10

ncbi_submitter: Hunan Children's hospital


ncbi_organism_name: Pseudodesulfovibrio sp. 7M6

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Lishizhenia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexi bacterium UBA6019

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium UBA6019


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Central venous access devices

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: USA: Georgia

ncbi_isolation_source: environmental water

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: 238 ECC

ncbi_submitter: USDA-ARS-USNPRC-RRC


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides ovatus 3_8_47FAA

ncbi_submitter: Broad Institute


ncbi_submitter: Universidad Nacional Autonoma de Mexico. Centro de Ciencias Genomicas


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Salmonella sp. NW1250

ncbi_submitter: Sichuan University


ncbi_country: USA: New Hampshire

ncbi_isolation_source: ascending colon aspirate

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Actinomyces oris

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Faeces


ncbi_organism_name: Stenomitos sp.

ncbi_submitter: Rutgers University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Feces of healthy 3-month-old male infants

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Northeast Agricultural University


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. DP16D-T1

ncbi_submitter: Arkin Lab


ncbi_isolation_source: stool sample

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Baekduia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: Rain forest

ncbi_organism_name: Lactobacillus sp. ESL0684

ncbi_submitter: University of Lausanne


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Scybalocola fimicaballi

ncbi_submitter: Quadram Institute

ncbi_taxonomy: d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Candidatus Scybalocola (ex Gilroy et al. 2022);s__Candidatus Scybalocola fimicaballi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Candidatus Scybalocola (ex Gilroy et al. 2022);s__Candidatus Scybalocola fimicaballi


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Spain: Barcelona

ncbi_isolation_source: sputum

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Brazil

ncbi_isolate: Cattle

ncbi_isolation_source: urine

ncbi_strain_identifiers: Norma;Cattle

ncbi_submitter: Federal University of Minas Gerais

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Hardjo;x__Leptospira interrogans serovar Hardjo str. Norma


ncbi_country: Poland

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_country: France

ncbi_isolation_source: cheese rind

ncbi_organism_name: Psychrobacter sp. FME61

ncbi_submitter: INRA


ncbi_country: USA: International Space Station

ncbi_isolation_source: Port panel next to cupola Node 3

ncbi_organism_name: Kocuria palustris

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Kingella oralis

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: preputial scraping

ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter fetus;sb__Campylobacter fetus subsp. fetus;x__Campylobacter fetus subsp. fetus cff110800-21-2


ncbi_organism_name: Weissella cibaria

ncbi_submitter: Kyungpook National University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: addis ababa university


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Hafnia sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_country: South Korea: Seoul

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Pedobacter sp. AK017

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_country: Kenya: Laikipia

ncbi_isolation_source: Camel

ncbi_submitter: University of Zurich


ncbi_organism_name: Burkholderia multivorans

ncbi_strain_identifiers: NZPT 0170

ncbi_submitter: Hannover Medical School


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universite de Sherbrooke


ncbi_country: South Africa: North West; Free State; Northern Cape and Gauteng provinces

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas vasicola pv. zeae

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptomyces sp. NPDC008061

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC001553


ncbi_country: China

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: IMG-taxon 2585428146 annotated assembly

ncbi_organism_name: Clostridium tetani

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: water

ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: University of Toronto


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: adult male sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institute of Infection and Global Health


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Korea Food Research Institute


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Mexico: Sonora; Caborca

ncbi_organism_name: Photorhabdus luminescens subsp. sonorensis

ncbi_strain_identifiers: Caborca

ncbi_submitter: University of Arizona


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_assembly_name: Rumen uncultured genome RUG14132

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Fudan University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Czech Republic: Usti nad Labem

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii ANC 4097

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii ANC 4097


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South Dakota State University


ncbi_isolation_source: Marine Broth

ncbi_organism_name: Shewanella goraebulensis

ncbi_submitter: Pukyong National University


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Lactobacillus kullabergensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Enterococcus malodoratus

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Monash University


ncbi_organism_name: Streptococcus vestibularis


ncbi_organism_name: uncultured Sulfurovum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Milan


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: uncultured Lentisphaerales bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus sp. HMSC056C01

ncbi_submitter: The Genome Institute at Washington University


ncbi_assembly_name: freshwater MAG --- MJ120827B_bin-150

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Spain

ncbi_isolation_source: milk

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: UCM


ncbi_country: South Korea:Sunchang

ncbi_isolation_source: Sus scrofa domesticus feces

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: South Korea: Jeollabuk-do; Wanju_Gun; Bibong-myeon

ncbi_isolation_source: Greenhouse soil

ncbi_organism_name: Frateuria soli

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Portugal

ncbi_isolation_source: Anal

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: National Institute of Health, Portugal


ncbi_country: India

ncbi_isolation_source: Drug

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Christian Medical College


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Australia

ncbi_isolation_source: Yellow squash

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The University of Queensland


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: nose

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_country: Germany: Zingst

ncbi_isolation_source: brackish water

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_organism_name: Kribbella koreensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Brazil

ncbi_isolation_source: mango tree

ncbi_strain_identifiers: CFBP 2913

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. anacardii;x__Xanthomonas citri pv. anacardii CFBP 2913

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: freshwater MAG --- Erken-D5_bin-0520

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Streptococcus suis 05ZYH33

ncbi_submitter: Beijing Institute of Genomics, Chinese Academy of Sciences,


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Herminiimonas sp.

ncbi_submitter: EPFL


ncbi_country: China: Shanghai

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes SHL012

ncbi_submitter: University of Maryland, College Park


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Northern Arizona University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0293

ncbi_organism_name: uncultured Acidobacteriia bacterium

ncbi_submitter: BILS


ncbi_country: China

ncbi_isolation_source: Fermented goat milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei DL28

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_submitter: Nofima


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Pondicherry University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Deinococcus hopiensis KR-140

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of Queensland


ncbi_country: France: Zellenberg

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. ZBG10

ncbi_submitter: Kher Heng Leong


ncbi_country: Thailand: Loei

ncbi_isolation_source: food

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: USA: MO

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Peru

ncbi_isolation_source: String method

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institue


ncbi_organism_name: Mycobacteroides salmoniphilum

ncbi_submitter: Uppsala University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0437


ncbi_country: Australia: Victoria

ncbi_isolation_source: Foam on activated sludge

ncbi_organism_name: Gordonia amarae

ncbi_submitter: La Trobe University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Cadiz


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Toe web space swab

ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: sludge

ncbi_organism_name: Flexivirga caeni

ncbi_submitter: Hankyong National University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Oklahoma


ncbi_country: Ethiopia: Amhara; North Gondar

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Spain: Madrid

ncbi_isolation_source: stomach

ncbi_submitter: University of Gothenburg


ncbi_country: USA

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: South Korea: Cheongju-si

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Korea Disease Control and Prevention Agency


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus M0509

ncbi_submitter: Broad Institute


ncbi_country: China: Zhejiang

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Max planck institute for marine microbiology


ncbi_country: Sri Lanka: Colombo

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Chester


ncbi_isolation_source: stool

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Queensland


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: JCVI


ncbi_organism_name: Neobacillus sp.


ncbi_isolation_source: terrestrial

ncbi_organism_name: Peptococcaceae bacterium


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Cornell University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Comamonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: unknown

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Gongliu county; Xinjiang

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Henan University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Propionicimonas sp.

ncbi_submitter: CRC RESIST


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: Xiamen University


ncbi_country: India: Jetpur; Gujarat

ncbi_isolation_source: Textile industry effluent

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus parasanguinis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: China Agricultural University


ncbi_country: China

ncbi_organism_name: Escherichia coli


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_submitter: sichuan university


ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: Nanjing University


ncbi_country: Portugal

ncbi_isolation_source: Penile

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: National Institute of Health, Portugal


ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: City University of Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_assembly_name: Rumen uncultured genome RUG12935

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guangxi

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University