ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Streptomyces sp. NPDC005402

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


gtdb_representative: f

ncbi_assembly_level: Complete Genome

ncbi_country: China: Yibin; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Actinomadura vinacea

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: China

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Burkholderia stagnalis


ncbi_country: USA

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Pediococcus acidilactici


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: Canada: Brooks

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_assembly_level: Chromosome

ncbi_organism_name: Alloscardovia omnicolens

ncbi_submitter: University of Alaska Anchorage


ncbi_organism_name: Raoultella sp. 18097

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_organism_name: Polaribacter sp. Hel1_33_96


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Japan

ncbi_submitter: Toho university


ncbi_isolation_source: not provided

ncbi_organism_name: Neisseria elongata


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lacticaseibacillus paracasei


ncbi_organism_name: Streptomyces flaveolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: landfill

ncbi_organism_name: Pseudomonas knackmussii

ncbi_submitter: Northwest A&F University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Atlantic Ocean: Logatchev

ncbi_isolation_source: gills from mollusc collected from dive Alvin 3133

ncbi_organism_name: Candidatus Ruthia sp. Asou_11_S2

ncbi_submitter: Universite de Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Ruthturnera;x__unclassified Candidatus Ruthturnera;s__Candidatus Ruthia sp. Asou_11_S2


ncbi_isolation_source: wastewater

ncbi_organism_name: Aminobacter sp. NyZ550

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter pittii;x__Acinetobacter pittii ATCC 19004 = CIP 70.29


ncbi_strain_identifiers: IFEC 44

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Chester


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paenarthrobacter nicotinovorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Sweden

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: United Kingdom: Edinburgh; Royal Infirmary Edinburgh; Neonatal unit

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Cork Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: freshwater MAG --- Erken-D1_bin-0005

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Mycoplasma sp. 744

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: China: Jing Zi Habour; Weihai

ncbi_isolation_source: marine

ncbi_organism_name: Alteromonadaceae bacterium M269

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Stockholm University


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_organism_name: Priestia endophytica

ncbi_submitter: Cinvestav


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-418-M08

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: South Korea

ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Flavobacterium sp. N501239

ncbi_submitter: Jeju National University


ncbi_isolation_source: Faeces


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Klebsiella oxytoca


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA

ncbi_isolation_source: CF Blood

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shantou University Medical College


ncbi_country: Switzerland

ncbi_isolation_source: potato-based retail food product

ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Zurich


ncbi_organism_name: Litoreibacter ponti

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: Oral microbiome

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Sofia University "St. Kliment Ohridski"


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: The University of Texas at Dallas


ncbi_submitter: University of California at Davis


ncbi_country: Portugal

ncbi_isolation_source: clinical isolate

ncbi_submitter: Universite Laval


ncbi_assembly_name: Rumen uncultured genome RUG12302

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_submitter: Heidelberg University Hospital


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-2330

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_assembly_name: freshwater MAG --- Loc090721-6m_bin-752

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Guangxi Province

ncbi_isolation_source: Cow s milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: GUANGXI ACADEMY OF FISHERY SCIENCES


ncbi_country: Germany: Roxel

ncbi_isolation_source: compost

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Zoological Institute, Kiel University


ncbi_country: Australia: Thorneside Wastewater Treatment Plant

ncbi_isolation_source: flocular biomat

ncbi_organism_name: Anaerolineales bacterium UBA2356


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Nocardia sp. NPDC101769

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universidad Autonoma del Estado de Morelos


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: XYC

ncbi_submitter: Enze Hospital


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: University of Amsterdam


ncbi_isolate: AOP36_B1_surf _bin _4

ncbi_strain_identifiers: AOP36_B1_surf _bin _4

ncbi_submitter: Genoscope


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Neomicrothrix subdominans

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-7679


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Sutterella sp.


ncbi_isolation_source: sewage

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: China: GuangZhou

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Tissue Right Shoulder HUMERAL MEMBRANE No. 3

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Altaica


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 2 20 to 25cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_country: France:Paris; Seine River

ncbi_isolation_source: river water

ncbi_submitter: Universite Parsi-Saclay/ UMR1184


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Italy

ncbi_isolation_source: swine manure

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chung-Ang University


ncbi_country: South Africa:Carltonville

ncbi_isolation_source: water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_organism_name: Jannaschia sp. M317

ncbi_submitter: Ocean University of China


ncbi_country: Thailand: Songkhla

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: New Zealand: Waikato

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA

ncbi_organism_name: Escherichia coli 99.0672

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_country: USA: Lake Erie

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Bordetella hinzii

ncbi_submitter: Fujian Center for Disease Control and Prevention, Fuzhou


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Taizhou

ncbi_organism_name: Escherichia sp. R13

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-4081

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bifidobacterium psychraerophilum DSM 22366

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Chitinispirillaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF24-4LB

ncbi_submitter: BGI-Shenzhen


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_assembly_name: Salmonella enterica CVM N40386-R v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Peribacillus sp. NPDC097198

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Yersinia rochesterensis

ncbi_submitter: SRCAMB


ncbi_country: South Korea

ncbi_isolation_source: squid

ncbi_organism_name: Tenacibaculum todarodis

ncbi_submitter: Korea University


ncbi_organism_name: Angelakisella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-268

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Anaerolineales bacterium

ncbi_strain_identifiers: new MAG-268

ncbi_submitter: Micoorganism


ncbi_country: France: Rouen

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Normandie Univ


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: United Kingdom

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: South Korea: Seoul

ncbi_isolation_source: stool

ncbi_submitter: Yonsei University


ncbi_country: India

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_country: France: Normandy

ncbi_isolation_source: Stools

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_isolation_source: Zha-Chili

ncbi_organism_name: Companilactobacillus zhachilii

ncbi_submitter: Hubei University of Arts and Science


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Church and Dwight


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Russia

ncbi_submitter: University Hospital of Besancon


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Aquincola sp.

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: School of Medicine, Southeast University


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_strain_identifiers: HN 5

ncbi_submitter: Shihezi University


ncbi_country: China

ncbi_isolation_source: plant root rhizosphere

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: Plant Pathology


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 485549-17


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Georgia


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri 2002028

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Microgenomates bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Candidatus Microgenomates;s__Candidatus Microgenomates bacterium


ncbi_organism_name: Actinomadura latina NBRC 106108

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: France

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Minnesota


ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Nocardia sp. N2S4-5

ncbi_submitter: Chungnam National University


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Thailand

ncbi_isolation_source: thermophilic hydrogen producing reactor

ncbi_organism_name: Thermoanaerobacterium sp. PSU-2

ncbi_submitter: Thaksin University


ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_country: South Korea: Jinju

ncbi_isolation_source: landfill

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Gyeongsang National University


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: USA

ncbi_isolation_source: foot wound

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: New Zealand: Waikato

ncbi_isolation_source: pasture

ncbi_submitter: Massey University


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Kenya

ncbi_organism_name: Apilactobacillus kunkeei

ncbi_strain_identifiers: LMbo

ncbi_submitter: Uppsala university


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolate: MAG 28

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Aquificaceae bacterium

ncbi_strain_identifiers: MAG 28

ncbi_submitter: WHOI


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-82

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Myxococcales bacterium

ncbi_strain_identifiers: new MAG-82

ncbi_submitter: Micoorganism


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Planktomarina temperata

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: Synechococcus sp. H55.1

ncbi_submitter: University of Montana


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_assembly_name: Pasteurella multocida strain 26 chromosome

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: strain 26

ncbi_submitter: Research and Production Center for Microbiology and Virology


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Rhodothermales bacterium


ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mollicutes bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: uncultured Elusimicrobiaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LHUB-ULB


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Spain: galicia

ncbi_isolation_source: clam

ncbi_organism_name: Vibrio toranzoniae

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_country: Denmark: Jytland

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Aarhus University


ncbi_country: China: Badain Jaran Desert

ncbi_isolation_source: soil

ncbi_organism_name: Solirubrobacter deserti

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio brasiliensis

ncbi_submitter: NSW Department of Primary Industries


ncbi_organism_name: uncultured Schwartzia sp.


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: PA

ncbi_isolation_source: Gall Bladder

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Yersinia pestis CMCC92004

ncbi_submitter: Beijing Genomics Institute


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: G. Shepherd

ncbi_submitter: SC


ncbi_organism_name: Ochrobactrum sp.

ncbi_submitter: Guangxi University


ncbi_country: Russia: Altai region; Kulunda Steppe

ncbi_isolation_source: anaerobic sediment from hypersaline soda lake

ncbi_organism_name: Marinilabiliaceae bacterium ANBcel2

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Mycolicibacterium senegalense

ncbi_submitter: Research Institute of Tuberculosis


ncbi_country: USA: Georgia

ncbi_isolation_source: freshwater lake mesocosm spiked with cow8 feces day 7

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: USA: California

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter vicugnae

ncbi_submitter: USDA


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Ruminococcaceae bacterium UBA1448

ncbi_submitter: University of Queensland


ncbi_country: Atlantic Ocean

ncbi_isolation_source: hand picked Trichodesmium colonies from marine 130 um planktonic net tow

ncbi_organism_name: Trichodesmium sp. St19_bin2

ncbi_submitter: University of Southern California


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


gtdb_type_species_of_genus: t

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Roseibium sp.


ncbi_country: Sweden: Gullmar Fjord

ncbi_isolation_source: hypoxic fjord sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Kiel University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Rhodoglobus sp.

ncbi_submitter: Colorado State University


ncbi_country: Chile: Valparaiso

ncbi_isolation_source: marine sediment

ncbi_organism_name: Corynebacterium alimapuense

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: uncultured Flammeovirgaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_country: Denmark

ncbi_isolation_source: Milk

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Chr. Hansen


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Macrococcoides caseolyticum


ncbi_country: USA: California; Eel River; Larabee Creek

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_13_LAR_U_A

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Azospirillum sp.


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: SC


ncbi_organism_name: Corynebacterium propinquum


ncbi_country: Russia: Saint-Petersburg

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Texas at Dallas


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudescherichia vulneris

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Distal colon


ncbi_assembly_name: freshwater MAG --- Loclat_bin-05504

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylocystaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Yunnan

ncbi_organism_name: Bartonella sp. M0283

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tehran University of Medical Sciences


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Broad Institute


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Anaerococcus sp.

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium RIFCSPHIGHO2_02_FULL_43_14


ncbi_isolation_source: burned soil

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: CA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: NE

ncbi_isolation_source: granny smith apple

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Dental plaque

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans;x__Aggregatibacter actinomycetemcomitans serotype e str. ANH9776


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Ningxia Medical University General Hospital


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecium


ncbi_country: Hungary

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Medicago Hapmap Project


ncbi_country: USA: Bloomington; IN

ncbi_isolation_source: co-culture of Aspergillus flavus and Bombella sp. isolated from honey bee

ncbi_organism_name: Bombella sp.

ncbi_submitter: Vanderbilt University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Changhai Hospital Affiliated to Naval Military Medical University


ncbi_organism_name: Lachnospiraceae bacterium PFB1-22

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Vibrio sinaloensis

ncbi_submitter: CIAD, A.C.


ncbi_country: Peru: Lima

ncbi_isolation_source: wildlife

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Andres Bello


ncbi_country: Colombia: Magdalena

ncbi_isolation_source: marine water

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: Peadiatric - nurses table

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_submitter: Ausgem


ncbi_country: Sweden: Vastra Gotaland; Gothenburg

ncbi_isolation_source: Human cornea

ncbi_organism_name: Moraxella nonliquefaciens

ncbi_submitter: TAILORED-Treatment project


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: alternating anaerobic and microareobic bioreactor

ncbi_organism_name: bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: national health research institutes


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INTA


ncbi_country: India: NewDelhi

ncbi_submitter: Christian Medical College


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Caldalkalibacillus horti

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: France

ncbi_isolation_source: sugarcane fermented

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: CIRM-BIA 1445

ncbi_submitter: Brigham Young University


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: University of Georgia


ncbi_country: China: Zhejiang

ncbi_organism_name: Acinetobacter sp. YH01022

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Chitinivibrionales bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Schwartzia sp. (in: firmicutes)

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Schwartzia;x__unclassified Schwartzia (in: firmicutes);s__Schwartzia sp. (in: firmicutes)


ncbi_organism_name: Photorhabdus sp. S12-55

ncbi_submitter: University of Bern


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus sp. IVB6240


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Boston; MA

ncbi_isolation_source: drainage

ncbi_organism_name: Staphylococcus aureus M0625

ncbi_submitter: Broad Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: home-made water kefir

ncbi_organism_name: Oenococcus kitaharae

ncbi_submitter: UR oenologie


ncbi_country: Peru: Lima


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Fish spleen

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Nippon veterinary and life sciense university


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Japan

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Brazil

ncbi_isolation_source: vegetable salad with homemade mayonnaise

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Brazil: Benjamin Constant; AM

ncbi_isolation_source: tree

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Universidade Federal Rural de Pernambuco


ncbi_country: South Korea: Muchangpo

ncbi_isolation_source: enrichment culture inoculated with marine sediment

ncbi_organism_name: Methyloceanibacter sp. wino2

ncbi_submitter: Jeju National University


ncbi_organism_name: Sphingobium sp. HWE2-09

ncbi_submitter: Chungnam National University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Duodenibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Tidjanibacter sp.


ncbi_country: Chile: Bahia de Concepcion

ncbi_isolation_source: Marine sediments from a bay

ncbi_organism_name: Clostridiaceae bacterium HSG29

ncbi_submitter: Aarhus University


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Ningbo University


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: Cheese rind

ncbi_organism_name: Glutamicibacter sp. BW78

ncbi_submitter: Dutton Lab, UCSD


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_assembly_name: Salmonella enterica CVM N47720 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-8879

ncbi_organism_name: uncultured Parafilimonas sp.

ncbi_submitter: BILS


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Exiguobacterium profundum

ncbi_submitter: National Autonomous University of Mexico

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium profundum


ncbi_country: Pakistan

ncbi_organism_name: Stenotrophomonas geniculata

ncbi_strain_identifiers: NIGAB

ncbi_submitter: PARC-National Agricultural Research Center


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rickettsia typhi

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Luteimonas wenzhouensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus equinus ATCC 700338

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces sp. NBC_01579

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV111

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: GuiZhou University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Germany

ncbi_isolation_source: lung

ncbi_organism_name: Bordetella avium

ncbi_submitter: amedes GmbH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Roseburia hominis

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces noursei

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Portugal: Praia da Memoria

ncbi_organism_name: Shewanella sp. OPT22

ncbi_submitter: Interdisciplinary Centre of Marine and Environmental Research


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T83705

ncbi_submitter: Broad Institute


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: agricultural environmental material

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: Campylobacter sp. BCW_4319

ncbi_submitter: University of California at Davis


ncbi_organism_name: Clostridiales bacterium AM23-16LB

ncbi_submitter: BGI


ncbi_submitter: China Agricultural University


ncbi_isolation_source: clinical sample

ncbi_organism_name: Pseudoclavibacter triregionum

ncbi_submitter: University Hospital Basel


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Providencia sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Senegal

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Caecum


ncbi_country: Thailand: Phitsanulok

ncbi_isolation_source: food

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Ruminimicrobiellum bubulum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University Huashan Hospital


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomyces sp.

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: China: Beijing

ncbi_isolation_source: Tracheal lavage


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_isolation_source: polluted soil sample

ncbi_organism_name: Nocardioides alcanivorans

ncbi_submitter: GFZ German Research Centre for Geosciences


ncbi_country: Mozambique

ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Sea foam

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Streptosporangium sp. NPDC001559


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UFMG


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: uncultured Hymenobacter sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Nonomuraea sp. NPDC049269


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Corynebacterium flavescens

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Desulfobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Umea2p3_bin-0511

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA

ncbi_organism_name: Rhodanobacter sp. OR92

ncbi_submitter: JGI


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: University of Washington


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of Maryland Eastern Shore


ncbi_isolation_source: Isolated as a contaminant in the Zeilstra-Ryalls lab; Bowling Green State University.

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Z

ncbi_submitter: New England Biolabs


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: LNCC


ncbi_country: Germany: Thuringia

ncbi_isolation_source: medieval mine

ncbi_organism_name: Fodinicola feengrottensis

ncbi_submitter: Kasetsart University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: India: Jamshedpur

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Institute of Science Education and Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: China

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: USA: Woodland city on Yolo county

ncbi_isolation_source: Biological material

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_assembly_name: Rumen uncultured genome RUG12838

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC005500

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0540

ncbi_submitter: Broad Institute


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Iraq

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. MT29

ncbi_submitter: University of Mosul


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;x__Spirochaetales incertae sedis;g__Candidatus Gallitreponema;s__Candidatus Gallitreponema excrementavium


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: South Africa:Stellenbosch

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: USA: VA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T20142


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Cinvestav


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: Folsomia candida midgut

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: VU University Amsterdam


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Leyella stercorea

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Richelia sp. CSU_2_1

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_isolation_source: metagenome

ncbi_organism_name: Lachnoclostridium sp. An76

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Brazil: Salvador

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: urine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antioquia


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: McGill University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolate: AOP1_I1_surf _bin _14

ncbi_organism_name: Moraxellaceae bacterium

ncbi_strain_identifiers: AOP1_I1_surf _bin _14

ncbi_submitter: Genoscope


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Bradyrhizobium sp. RT9b

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Cryomorpha sp.

ncbi_submitter: Rutgers University


ncbi_country: South Korea:Shin-an

ncbi_isolation_source: seawater

ncbi_organism_name: Flagellimonas maritima

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_organism_name: Legionella anisa

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Methylococcus sp. UBA6136

ncbi_submitter: University of Queensland


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Shewanella baltica

ncbi_submitter: SC


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Meat processing equipment

ncbi_organism_name: Clostridium tagluense

ncbi_submitter: University of Zurich


ncbi_organism_name: Sulfitobacter brevis

ncbi_submitter: McGill University


ncbi_isolation_source: endosphere

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: NIOO KNAW


ncbi_organism_name: Staphylococcus aureus F12753

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: KY

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: shaoxing people's hospital


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: Pelomonas aquatica

ncbi_submitter: DOE Joint Genome Institute


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_country: Germany

ncbi_isolation_source: patient

ncbi_organism_name: Streptococcus suis 11611

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Enterococcus sp. AZ189


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridium cagae

ncbi_submitter: CDC of Sichuan Province


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Ramlibacter sp. 2FC

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_isolate: Lactobacillus paragasseri_S3-11-C17

ncbi_organism_name: Lactobacillus paragasseri

ncbi_strain_identifiers: Lactobacillus paragasseri_S3-11-C17

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Pontimonas sp.

ncbi_submitter: Linnaeus University


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: LSU Health In New Orleans


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Rutgers University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Rhodoplanes tepidamans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter johnsonii


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Edison Family Center for Genome Sciences and Systems Biology


ncbi_country: Atlantic Ocean: Lost City Hydrothermal Field

ncbi_isolation_source: marine hydrothermal vent chimney

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: University of Utah


ncbi_isolation_source: blood culture

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_country: USA: Minnesota

ncbi_isolation_source: urine

ncbi_submitter: University of Minnesota


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Micavibrio sp. UBA6145

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Limimaricola sp.

ncbi_submitter: GNS Science


ncbi_organism_name: Candidatus Pelagibacter sp. HIMB1782

ncbi_submitter: Hawaii Institute of Marine Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. HIMB1782


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Georgia

ncbi_isolation_source: Lake Lanier

ncbi_organism_name: Bacteroidetes bacterium UBA2234

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA2234


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Henan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium UBA5942


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Canada: Vancouver

ncbi_isolation_source: activated sludge

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of British Columbia


ncbi_country: India:Kangra; Himachal Pradesh

ncbi_isolate: Lactobacillus plantarum

ncbi_isolation_source: faecal sample

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: HFC8;Lactobacillus plantarum

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Yale University


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_country: Pacific Ocean

ncbi_isolation_source: Single cell amplified by MDA; raw seawater

ncbi_organism_name: Prochlorococcus sp. HOT208_60m_808M21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Nocardia asteroides

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia

ncbi_isolate: Faeces

ncbi_isolation_source: phylogroupE

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Maryland; Bethesda

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: cattle

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_country: Italy

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Sapienza University of Rome


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Lamb

ncbi_organism_name: Clostridium tagluense

ncbi_submitter: University of Zurich


ncbi_submitter: The University of Sydney


ncbi_submitter: Institut National de la Recherche Agronomique (INRA)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Latilactobacillus;s__Latilactobacillus sakei;sb__Latilactobacillus sakei subsp. sakei;x__Latilactobacillus sakei subsp. sakei 23K


ncbi_organism_name: Pyruvatibacter sp.

ncbi_submitter: University of Southern California


ncbi_submitter: Sichuan University


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Duncaniella freteri


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: probiotic prodcut

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Evolve Biosystems Inc.


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhengzhou University


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Brevundimonas subvibrioides


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Australia: Gippsland Lakes

ncbi_isolation_source: freshwater

ncbi_organism_name: Microcystis aeruginosa CS-567/02

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_isolation_source: caecum

ncbi_organism_name: Bacteroides gallinaceum

ncbi_submitter: Veterinary Research Institute


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Gut

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Instituto Gulbenkian de Ciencia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Parabacteroides sp. PH5-39

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Brevinema sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: Distal colon


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Calditrichia bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Monoglobus pectinilyticus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Egerieousia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Egerieousia;x__unclassified Candidatus Egerieousia;s__Candidatus Egerieousia sp.


ncbi_organism_name: Candidatus Ventrenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Ventrenecus;x__unclassified Candidatus Ventrenecus;s__Candidatus Ventrenecus sp.


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Jiangnan University


ncbi_organism_name: Acetobacter syzygii

ncbi_submitter: Teagasc


ncbi_organism_name: Enterobacter pseudoroggenkampii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Streptomyces sp. R-07

ncbi_submitter: Iowa State University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Phascolarctobacterium sp.


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: EMG


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: USA: North Carolina

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Bioreactor performing anaerobic oxidation of methane coupled to iron reduction

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Colombia: Bucaramanga

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Fusicatenibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: Beijing Genome Institute


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Yibin

ncbi_isolation_source: mud pit

ncbi_organism_name: Caproicibacterium argilliputei

ncbi_submitter: Sichuan University of Science & Engineering


ncbi_organism_name: Zavarzinella sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium mucifaciens

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD6507

ncbi_submitter: Chinese University of Hong Kong


ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: Indian Ocean: Red Sea

ncbi_isolation_source: (DCM) deep chlorophyll maximum layer

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Rivihabitans pingtungensis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Munich

ncbi_isolation_source: activated sludge

ncbi_organism_name: Malikia granosa

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli ONT:H33 str. C48/93

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli ONT:H33;x__Escherichia coli ONT:H33 str. C48/93


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Bartonellaceae;g__Bartonella;s__Bartonella doshiae;x__Bartonella doshiae NCTC 12862 = ATCC 700133


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Streptomyces sp. ID01-9D


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Pauljensenia sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Ponticoccus sp. SC2-67

ncbi_submitter: Shantou University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Achromobacter sp.


ncbi_country: Portugal: Marco de Canaveses

ncbi_isolation_source: water sample

ncbi_organism_name: Nodularia sp. LEGE 04288

ncbi_submitter: CIIMAR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nodulariaceae;g__Nodularia;x__unclassified Nodularia (in: cyanobacteria);s__Nodularia sp. LEGE 04288


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Taiwan

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Taipei Medical University


ncbi_country: China: Shanghai

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Limnospira sp. PMC 1254.20

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Kiritimatiellia bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Helicobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: Urine (catheter)

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Servicio Antimicrobianos. INEI-ANLIS #Dr. Carlos G. Malbran"


ncbi_country: Morocco

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_organism_name: Klebsiella sp. 118468

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_isolation_source: cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Enterobacter sp. Sphag71

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA29

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile Y21

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Anaeroplasma sp.

ncbi_submitter: AAFC


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: sepsis

ncbi_submitter: URMC


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Trichormus variabilis PNB

ncbi_strain_identifiers: PNB

ncbi_submitter: University of Missouri-St. Louis


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Toho University


ncbi_country: Japan

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: Austria: Creek Fischach at Seekirchen

ncbi_isolation_source: creek; freshwater

ncbi_organism_name: Polynucleobacter sp. 86C-FISCH

ncbi_submitter: University of Innsbruck


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Roseibium sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Mesobacillus sp. MER 48

ncbi_strain_identifiers: MER 48

ncbi_submitter: Jet Propulsion Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Mesobacillus;x__unclassified Mesobacillus;s__Mesobacillus sp. MER 48


ncbi_country: Guam: Anae Island Reef; Piti Bomb Holes

ncbi_isolation_source: whole sponge tissue

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of California, San Diego


ncbi_country: China: Hunan

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Brazil: Sao Paulo; Ribeirao Preto

ncbi_isolation_source: Tracheal Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ribeirao Preto Medical School - USP


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: China: Jiulong River; Nanjing; Fujian

ncbi_isolation_source: surface sediment of the Jiulong River

ncbi_organism_name: Jiulongibacter sediminis

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources