ncbi_organism_name: uncultured Rhodanobacteraceae bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


gtdb_representative: t

ncbi_assembly_name: freshwater MAG --- AM_bin-0953

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_assembly_level: Scaffold

ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Syntrophomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: Germany: Straubing City

ncbi_isolation_source: biowaste container sample

ncbi_organism_name: Lysinibacillus xylanilyticus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pittsburgh


ncbi_country: Ireland

ncbi_isolation_source: porcine feces

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Teagasc Food Research Centre


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Oligoflexus sp.

ncbi_submitter: Colorado State University


ncbi_country: USA

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Candidatus Collinsella stercoripullorum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Atopobium minutum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Sil NS 19

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. AF17-2

ncbi_submitter: BGI


ncbi_country: Pakistan

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudomonas sp. GV105

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_level: Complete Genome

ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Clostridiales bacterium UBA3223

ncbi_submitter: University of Queensland


ncbi_isolation_source: Soil

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Candidatus Thioglobus sp.

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__environmental samples;s__uncultured Candidatus Thioglobus sp.


ncbi_country: Denmark: Odense

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Region Zealand


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: USA: VA

ncbi_isolation_source: water gallon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA: TN

ncbi_isolation_source: Pork Chop

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Drain

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Kvitko Lab


ncbi_assembly_level: Chromosome

ncbi_country: China

ncbi_isolation_source: secretion

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: Antarctica: McMurdo Dry Valleys

ncbi_isolation_source: sediment-laden stratified basal ice from Taylor Glacier

ncbi_organism_name: Paenisporosarcina sp. TG20

ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;s__Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_02_FULL_39_8


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hangzhou Medical University


ncbi_country: Argentina: Rio Grande; Tierra del Fuego Island

ncbi_organism_name: Brucella ovis IntaBari-2010-47-268

ncbi_submitter: Broad Institute


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Egypt: Wadi Natrun

ncbi_isolation_source: saline lake

ncbi_organism_name: Ectothiorhodospira variabilis

ncbi_strain_identifiers: WN 21R

ncbi_submitter: Bellevue University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA7884

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA7884


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Servicio Antimicrobianos. INEI-ANLIS #Dr. Carlos G. Malbran"


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_country: USA: Ohio

ncbi_submitter: JCVI


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriaceae bacterium UBA1987


ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Portugal

ncbi_organism_name: Brucella abortus F5/04-7

ncbi_submitter: Broad Institute


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter ailurogastricus

ncbi_submitter: University of Antwerp, Belgium


ncbi_organism_name: Segatella hominis


ncbi_assembly_name: Clostridium isatidis BK32

ncbi_organism_name: Clostridium isatidis

ncbi_submitter: Japan International Research Center for Agricultural Sciences (JIRCAS)


gtdb_type_species_of_genus: t

ncbi_country: Canada: Quebec city

ncbi_isolation_source: Vagina

ncbi_organism_name: Criibacterium bergeronii

ncbi_refseq_category: reference genome

ncbi_submitter: CHU de Quebec - Universite Laval

ncbi_type_material_designation: assembly from type material


ncbi_country: India: Chandigarh

ncbi_isolation_source: human stool sample

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Sweden: Orebro

ncbi_isolation_source: cornea

ncbi_organism_name: Corynebacterium macginleyi

ncbi_submitter: Aarhus University


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Candidatus Accumulibacter affinis

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter affinis


ncbi_country: USA: Memphis; TN

ncbi_isolation_source: stool sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Shanghai

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai JiaoTong University


ncbi_country: Turkey: Adana

ncbi_isolation_source: Orchard

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Italy: Bologna

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_organism_name: Acinetobacter sp. 99

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_country: Bangladesh

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Cardiff University


ncbi_country: Spain

ncbi_isolation_source: biofilm

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Instituto de la Grasa-CSIC


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Xanthomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: human milk

ncbi_organism_name: Lacticaseibacillus paracasei subsp. paracasei

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_submitter: University Montpellier Service de Microbiologie et Hygiene Hospitaliere CHU Nimes


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Academy of Military Medical Sciences


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Listeria aquatica

ncbi_submitter: AGES


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_assembly_name: CCCM 005

ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: CCCM 005

ncbi_submitter: The University of Queensland


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Montana State University


ncbi_organism_name: Neisseria sp. 23W00296

ncbi_submitter: Peking Union Medical College Hospital


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: United Arab Emirates

ncbi_organism_name: Fluoribacter dumoffii

ncbi_submitter: Danish Technical University


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Vibrio sp. Vb2897

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Netherlands

ncbi_isolation_source: wound

ncbi_organism_name: Bacillus mobilis

ncbi_submitter: University of Groningen


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian Sea

ncbi_organism_name: SAR202 cluster bacterium Casp-Chloro-G4

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium Casp-Chloro-G4


ncbi_isolation_source: anaerobic sludge

ncbi_organism_name: Lentimicrobium saccharophilum

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Amphibacillaceae bacterium

ncbi_submitter: University of Minnesota

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;f__Amphibacillaceae;x__unclassified Amphibacillaceae;s__Amphibacillaceae bacterium


ncbi_country: China: Boshang District; Lincang; Yunnan

ncbi_isolation_source: diseased stem of tobacco

ncbi_organism_name: Pectobacterium sp. 21LCBS03

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_country: Malaysia

ncbi_isolation_source: sputum sample from patient with lung infection

ncbi_organism_name: Mycobacteroides abscessus M156

ncbi_submitter: Universiti Malaya, Kuala Lumpur


ncbi_country: Saudi Arabia

ncbi_isolation_source: sandy arid soil

ncbi_organism_name: Microvirga makkahensis

ncbi_submitter: Sun Yat-sen University, SYSU


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_submitter: PathoGenoMik

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria seeligeri;x__Listeria seeligeri serovar 1/2b str. SLCC3954


ncbi_submitter: National Veterinary Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Molade


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_isolate: labscale reactor_MAG15

ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_strain_identifiers: labscale reactor_MAG15

ncbi_submitter: European Union Horizon 2020 research and innovation programme


ncbi_country: Japan

ncbi_isolation_source: subcutaneous abscess

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Candidatus Lucifugimonas marina

ncbi_submitter: Inha University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Candidatus Lucifugimonadales;f__Candidatus Lucifugimonadaceae;g__Candidatus Lucifugimonas;s__Candidatus Lucifugimonas marina

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;o__Candidatus Lucifugimonadales;f__Candidatus Lucifugimonadaceae;g__Candidatus Lucifugimonas;s__Candidatus Lucifugimonas marina


ncbi_country: Taiwan

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Yakutia

ncbi_isolation_source: feces

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: Institute of Experimental Medicine


ncbi_country: China: Shandong

ncbi_isolation_source: organic material

ncbi_organism_name: Exiguobacterium acetylicum

ncbi_submitter: shandong agricultural university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium acetylicum


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia faecis

ncbi_submitter: University of Chicago


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: USA: CA

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Netherlands: Walcheren

ncbi_organism_name: Pseudomonas savastanoi pv. fraxini

ncbi_strain_identifiers: ICMP 9129

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. fraxini


ncbi_country: Thailand: Udon Thani

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Tianjin

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Disease


ncbi_assembly_name: Rumen uncultured genome RUG12936

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Pakistan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cardiff University


ncbi_country: Turkey

ncbi_isolation_source: entomopathogenic nematodes

ncbi_organism_name: Photorhabdus thracensis

ncbi_submitter: Kyungpook National University


ncbi_organism_name: uncultured Desulfonema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Hospital Puerta del Mar


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Veillonella infantium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_organism_name: Pyrinomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: plant tissue

ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: Academia Sinica


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: France: APHM

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_country: China: Huizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Beijing

ncbi_isolation_source: sandy soil

ncbi_organism_name: Catellatospora chokoriensis

ncbi_submitter: Sichuan Industrial Institute of Anotibioctics


ncbi_country: China: Shenzhen

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong


ncbi_country: Japan: Sekigahara; Gifu Pref

ncbi_isolation_source: soil

ncbi_organism_name: Dactylosporangium vinaceum

ncbi_submitter: INSERM


ncbi_isolate: VTEC

ncbi_isolation_source: feces

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Merdibacter sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Jilin University


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_assembly_name: De novo assembly of KCRI isolate RDK06_462

ncbi_isolation_source: wound swab sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: Belgium

ncbi_isolation_source: Porc

ncbi_submitter: Sciensano


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: human gut

ncbi_organism_name: Neobacillus jeddahensis

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: France

ncbi_organism_name: Qipengyuania citrea

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Brevundimonas aurifodinae

ncbi_submitter: Slippery Rock University


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Modestobacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University College of medicine


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Grand Staircase Escalante National Monument; Utah

ncbi_isolation_source: wet limestone wall in the Sheep Creek Drainage

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Salmonella sp. LSP 262/02

ncbi_submitter: University of Oviedo


ncbi_organism_name: Pseudoalteromonas sp. WY3

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F23610

ncbi_submitter: Broad Institute


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Chicago


ncbi_country: China: Xinjiang

ncbi_isolation_source: water

ncbi_organism_name: Paucibacter sp. XJ19-41

ncbi_submitter: nstitute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Huzhou CDC


ncbi_organism_name: Thermodesulfovibrio yellowstonii

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01382

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01382


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AP

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: LHUB-ULB


ncbi_organism_name: Candidatus Tumulicola sp.


ncbi_organism_name: Streptomyces sp. NPDC058825


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_organism_name: Nonomuraea sp. NPDC049646


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: dtu national food institute


ncbi_organism_name: Bryobacterales bacterium


ncbi_country: China: Wuhu Polymetallic Mine; Anhui Province


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Thailand

ncbi_isolation_source: urine

ncbi_submitter: Thailand-Japan Research Collaboration Center on Emerging and Re-emerging infections, Research Institute for Microbial Diseases, Osaka University


ncbi_country: USA: Stanford; CA

ncbi_isolation_source: bloodstream

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: Stanford University


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Ben Gurion University of the Negev


ncbi_organism_name: Alistipes sp. CAG:435

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Gemmatimonas phototrophica

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium sp. MSK204

ncbi_submitter: Duke University


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Ares Genetics


ncbi_country: Norway

ncbi_organism_name: Brucella melitensis F3/02

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome hRUG873

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_organism_name: Pseudomonas sp. MPR-LB5

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Xanthomonas hortorum pv. carotae

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences

ncbi_type_material_designation: assembly from pathotype material


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: EMG


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Waddlia chondrophila 2032/99

ncbi_submitter: University of Vienna, Dept. of Microbial Ecology


ncbi_isolation_source: jaw

ncbi_organism_name: Tenacibaculum maritimum

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Population Genetics and Bioinformatics


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_isolation_source: human gut


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Azospira oryzae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Clostridia bacterium


ncbi_country: France: La Chapelle sur Erdre

ncbi_isolation_source: manure from dairy farm

ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: Athena Recherche & Innovation


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_assembly_name: freshwater MAG --- C24_bin-0997

ncbi_isolation_source: pond

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_organism_name: Avibacterium gallinarum

ncbi_submitter: SRCAMB


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Kiloniella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Oxford


ncbi_country: USA: NY

ncbi_isolation_source: urine

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002072


ncbi_organism_name: Komagataeibacter sucrofermentans

ncbi_submitter: ETH Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium

ncbi_submitter: Yonsei University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: San Francisco

ncbi_submitter: Santa Clara University


ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_organism_name: Scandinavium sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Cloacimonetes bacterium UBA5456

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Cloacimonetes bacterium UBA5456


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter sp. WCHA39

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Mexico: Guadalajara

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad El Bosque


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bifidobacterium bifidum


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Ningxia Hui Autonomous Region Center for Disease Control and Prevention


ncbi_country: USA: Florida

ncbi_organism_name: Prescottella equi

ncbi_submitter: The Roslin Institute


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bielefeld, Germany


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_submitter: University of Guelph


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: China: Shanghai

ncbi_isolation_source: anammox sludge

ncbi_organism_name: Nitrospira defluvii

ncbi_submitter: East China of university of science and technolongy


ncbi_country: USA: Beloit; WI

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Pacific Ocean: Eastern Tropical North Pacific

ncbi_isolation_source: seawater from oxygen minimum zone

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Hebei Research Institute of Microbiology Co., Ltd.


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Syntrophobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3012

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Japan: Ibaraki

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: A7 original

ncbi_submitter: Friendship Hospital, Capital Medical University


ncbi_organism_name: Terrabacter sp. GCM10028922

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Gluconobacter japonicus

ncbi_submitter: Teagasc


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Firmicutes bacterium AF36-19BH

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF36-19BH


ncbi_organism_name: Enterobacter sp. ECC-175

ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Qingdao Municipal Hospital


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin29

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: MDV bin29

ncbi_submitter: Monash University


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Streptomyces toxytricini

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Thailand: Hat Yai City; Songkhla province

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Peking University


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 4207-1

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120994


ncbi_country: South Korea: Seoul

ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: Seoul National University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Singapore General Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Germany

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Thermotoga profunda AZM34c06

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Ecuador: Quito

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium GW2011_GWD2_42_34


ncbi_organism_name: Xaviernesmea rhizosphaerae

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: EMG


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: chicken litter

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: Rectal swab

ncbi_submitter: JCVI


ncbi_country: Spain: Gran Canaria

ncbi_isolation_source: urinary catheter exudate

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 3844B

ncbi_submitter: University of Exeter


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Endozoicomonas atrinae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Alaska

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudomonas sp. 5Ae-yellow

ncbi_submitter: University of Alaska Fairbanks


ncbi_submitter: Anses


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Israel

ncbi_submitter: Sheba Medical center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis;x__Salmonella enterica subsp. enterica serovar Infantis str. 119944


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: rectal swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux - La Balme-Les Grottes


ncbi_country: China: Dalian

ncbi_isolation_source: activated sludge from a local municipal sewage plant

ncbi_organism_name: Acinetobacter sp. JW

ncbi_strain_identifiers: JW

ncbi_submitter: Dalian University of Technology


ncbi_country: Peru: Lambayeque

ncbi_organism_name: Streptomyces sp. CS147

ncbi_submitter: Universidad de Oviedo


ncbi_isolation_source: blood

ncbi_submitter: OHSU


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Marmoricola sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Toho university


ncbi_submitter: University of Padova


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microbacterium sp. LWH3-1.2

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_organism_name: Porphyrobacter sp.

ncbi_submitter: University of Utah


ncbi_isolation_source: coastal sea water

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: MD

ncbi_isolation_source: Spinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Corynebacterium marinum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Peru

ncbi_organism_name: Staphylococcus aureus DAR5847

ncbi_submitter: Broad Institute


ncbi_country: Germany: Karlsruhe

ncbi_isolation_source: fecal sample

ncbi_organism_name: Eggerthella lenta

ncbi_strain_identifiers: MRI-F 40

ncbi_submitter: Max Rubner-Institut


ncbi_country: Spain

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Barcelona


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Haliscomenobacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Lebanon: North

ncbi_isolation_source: environmental

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Paris Saclay University


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Paraglaciecola sp.


ncbi_country: Italy: Cossoine

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_country: China: Sichuan

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: United Kingdom:Midlands

ncbi_strain_identifiers: Bir 334


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Stellaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Bacillus cereus group sp. BceL001

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL001


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Alistipes putredinis


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Thermodesulfobacteriaceae bacterium

ncbi_submitter: Montana State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_country: Brazil: Sobradinho

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFMG


ncbi_country: Atlantic Ocean

ncbi_isolation_source: ocean sediment

ncbi_organism_name: Priestia flexa

ncbi_submitter: Qingdao University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Zoogloea sp.

ncbi_submitter: NanJing University


ncbi_country: Japan:Kochi; Kagamigawa River

ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Kochi University


ncbi_organism_name: Arachidicoccus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridium perfringens


ncbi_organism_name: Trichormus variabilis ATCC 29413

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Prevotella intermedia

ncbi_submitter: EMG


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Vienna


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Halobacillus sp. MO56

ncbi_submitter: UC Davis


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Toho University


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: New York City

ncbi_isolation_source: skin-AD site

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_country: South Africa: Soweto; Gauteng

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospira sp.


ncbi_organism_name: Streptomyces sp. R28

ncbi_submitter: College of resources and Environmental Sciences


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Tennessee

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: rumen

ncbi_organism_name: Acidaminococcus sp. UBA2908

ncbi_submitter: University of Queensland


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Nitratidesulfovibrio termitidis HI1

ncbi_submitter: JGI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 5-172-05_S4_C3

ncbi_submitter: IGS


ncbi_country: Australia: Bendigo; Victoria

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter tjernbergiae;x__Acinetobacter tjernbergiae DSM 14971 = CIP 107465


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Australia: Ulupna; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Sphingobacterium multivorum


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0072R


ncbi_isolation_source: mesocosm experiment

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA

ncbi_isolation_source: food processing facility

ncbi_organism_name: Microbacterium oxydans

ncbi_submitter: Penn State University


ncbi_organism_name: Streptomyces sp. DvalAA-83

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: shandong university


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Fujian Medical University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Wenzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: De novo assembly of KCRI isolate R0004_245

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Allorhizobium sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Patulibacter sp.

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Massachusetts General Hospital


ncbi_country: China: Yunnan Province; Xishuangbanna

ncbi_organism_name: Pseudonocardia endophytica


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_country: South Africa: Durban

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of KwaZulu Natal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: surficial creek

ncbi_organism_name: Thermosynechococcus sp. WC_1

ncbi_submitter: Northwestern University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_country: France: Normandy

ncbi_isolation_source: urine

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_organism_name: Leptospirillum ferriphilum ML-04

ncbi_submitter: State Key Lab of Microbial Technology, Shandong University, Jinan, China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Leptospirillum;x__Leptospirillum sp. Group III;s__Leptospirillum ferriphilum;x__Leptospirillum ferriphilum ML-04


ncbi_organism_name: Priestia sp. GS2

ncbi_submitter: Lodz University of Technology


ncbi_organism_name: uncultured Propionimicrobium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 27

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Atlantic Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Mameliella alba

ncbi_submitter: Mameliella atlantica L6M1-5 (MCCC 1A07531) is available from MCCC (Marine Culture Collection of China) (http://www.mccc.org.cn/).

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Ireland

ncbi_isolation_source: feaces

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: University College Cork


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Ottowia pentelensis

ncbi_strain_identifiers: NCAIM B.02336

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolate: SPRUCE 312

ncbi_organism_name: Syntrophales bacterium

ncbi_strain_identifiers: SPRUCE 312

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-3034

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-0160

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_assembly_name: freshwater MAG --- Day6-3_bin-118

ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Bacillus anthracis


ncbi_isolation_source: soil

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Novosphingobium panipatense


ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Sphingopyxis sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Tichowtungia sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ellagibacter sp.


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: South Korea

ncbi_submitter: Yonsei University College of medicine


ncbi_country: Russia:St Petersburg

ncbi_isolation_source: cervical

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: SC


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Lacrimispora saccharolytica

ncbi_submitter: University of Chicago


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: Streptomyces acidiscabies

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: USA: Califonia; Inyo County

ncbi_isolation_source: louse from fur of Tamias alpinus

ncbi_organism_name: Candidatus Lightella neohaematopini

ncbi_submitter: University of South Bohemia in Ceske Budejovice, Faculty of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__lice endosymbionts;g__Candidatus Lightella;s__Candidatus Lightella neohaematopini


ncbi_country: Egypt

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: China: Hunan

ncbi_organism_name: Comamonas sp. A23

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Michigan

ncbi_organism_name: Escherichia coli O45:H2 str. 03-EN-705

ncbi_submitter: US FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O45:H2;x__Escherichia coli O45:H2 str. 03-EN-705


ncbi_country: Belgium

ncbi_organism_name: Arcobacter vandammei

ncbi_submitter: Ghent University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Thiorhodococcus sp.

ncbi_organism_name: Imhoffiella purpurea

ncbi_submitter: Institute of Microbial Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Firmicutes bacterium GWF2_51_9

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium GWF2_51_9


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. R-M62

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: INTA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Streptomyces sp. IBSBF 3010

ncbi_strain_identifiers: IBSBF 3010

ncbi_submitter: UFSCar


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Mucilaginibacter sp.


ncbi_country: USA: AL

ncbi_isolation_source: mahi mahi fish

ncbi_organism_name: Morganella psychrotolerans

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Microvirga sp. TS319

ncbi_submitter: Korea Atomic Energy Research Institute


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Kurthia sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Romania: Targoviste

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Chlorobaculum sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillus atrophaeus ATCC 49822-2

ncbi_submitter: Transformational Medical Technologies Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus atrophaeus;x__Bacillus atrophaeus ATCC 49822;x__Bacillus atrophaeus ATCC 49822-2


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Wyoming

ncbi_isolation_source: retail meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_country: Norway: Spitsbergen

ncbi_isolation_source: guano of little auks

ncbi_organism_name: Psychrobacter sp. DAB_AL32B

ncbi_submitter: University of Warsaw, Faculty of Biology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Germany: Freising

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium porci

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Veillonella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: South Korea: lake near Hwajinpo Beach; East Sea

ncbi_isolation_source: water from salt lake

ncbi_organism_name: Flagellimonas marinaquae

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_isolation_source: chicken breeding waste

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Acadamy of Military Medical Sciences


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Hellea sp.

ncbi_submitter: Ocean University of China


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Santa Barbara; CA

ncbi_isolation_source: manganese oxidizing enrichment culture inoculated with an iron oxide mat collected from the outflow of a rusted iron pipe surrounded by reeds along the side of a road

ncbi_organism_name: Candidatus Manganitrophus morganii

ncbi_submitter: California Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Candidatus Troglogloeales;f__Candidatus Manganitrophaceae;g__Candidatus Manganitrophus;s__Candidatus Manganitrophus morganii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Candidatus Troglogloeales;f__Candidatus Manganitrophaceae;g__Candidatus Manganitrophus;s__Candidatus Manganitrophus morganii


ncbi_organism_name: Streptomyces antimycoticus

ncbi_submitter: Biological Resource Center


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Fusobacterium canifelinum

ncbi_submitter: US Food and Drug Administration


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Desulfohalobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf112

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: China

ncbi_isolation_source: duck cloacal

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: University of Montreal


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Huizhou

ncbi_isolation_source: sea water

ncbi_organism_name: Francisella sp. SYW-3

ncbi_submitter: Tradictional Chinese medicine University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Anaeromassilibacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Small intestine

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus safensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Turicimonas muris

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Actinobacteria bacterium UBA5976

ncbi_submitter: University of Queensland


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD7924

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Singapore

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_organism_name: uncultured Aliiroseovarius sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Enterococcus sp. DIV1258

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces sp. NPDC017966


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Catenibacterium sp.


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: marine

ncbi_organism_name: Opitutia bacterium


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: China:Guangdong; Naihai district; Foshan city

ncbi_isolation_source: feces

ncbi_submitter: South China Agricultural University


ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: Australia: Solomon Dam

ncbi_isolation_source: freshwater

ncbi_organism_name: Cylindrospermopsis raciborskii CS-508

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_isolation_source: drainage fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: Netherlands

ncbi_isolation_source: meat

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NIZO Food Research BV


ncbi_country: France

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Montpellier Service de Microbiologie et Hygiene Hospitaliere CHU Nimes


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Jiangxi Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Streptomyces sp. NPDC049887

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: UNIFESP


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Devosia sp.

ncbi_submitter: Colorado State University


ncbi_country: China: Wenchang

ncbi_organism_name: Streptomyces sp. HNM0561

ncbi_submitter: Hainan University


ncbi_organism_name: Brucella pituitosa

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_organism_name: Pseudomonas marincola

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: Loma Ridge

ncbi_isolation_source: Leaf Litter

ncbi_organism_name: Plantibacter sp. MMLR14_011

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Candidatus Skiveiella danica

ncbi_submitter: Aalborg University


ncbi_organism_name: Lachnospiraceae bacterium LCP19S3_B12

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Kanas Lake

ncbi_organism_name: Bacillus sp. M13(2017)

ncbi_submitter: Nanjing Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. M13(2017)


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_organism_name: Escherichia coli 907357

ncbi_submitter: Washington University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Rio De Janeiro

ncbi_isolation_source: plant roots

ncbi_organism_name: Azospirillum sp. Sp 7

ncbi_strain_identifiers: Sp 7

ncbi_submitter: University of Minnesota


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_isolation_source: pork salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Rumen uncultured genome RUG14191

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Allomuricauda sp. MMSF_3310

ncbi_submitter: The University of Melbourne


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Allorhizobium;s__Allorhizobium undicola;x__Allorhizobium undicola ORS 992 = ATCC 700741


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: uncultured Escherichia sp.


ncbi_organism_name: Paraliobacillus sp. PM-2

ncbi_submitter: URMITE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Microbacterium sp. Leaf320

ncbi_submitter: Max Planck Institute for Plant Breeding Research