ncbi_country: USA: Walter Reed Army Medical Center

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Miami University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Acinetobacter nosocomialis TG19596

ncbi_submitter: Translational Genomics Research Institute


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: burned soil

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Colorado State University


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Armatimonadia bacterium

ncbi_submitter: University of Iowa


ncbi_country: France

ncbi_isolation_source: water

ncbi_organism_name: Leptospira biflexa

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pavia


ncbi_organism_name: Methylorubrum pseudosasae

ncbi_strain_identifiers: SLI 233

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Haiti: Pivert River

ncbi_isolation_source: river

ncbi_organism_name: Vibrio cholerae 2012EL-1759

ncbi_submitter: CDC


ncbi_assembly_level: Complete Genome

ncbi_submitter: The Xanthomonas Threats project

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas axonopodis;x__Xanthomonas axonopodis subcluster 9.2;x__Xanthomonas axonopodis pv. poinsettiicola


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Streptomyces levis

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: Atlantic Ocean

ncbi_isolation_source: South Atlantic Ocean

ncbi_organism_name: Haliea sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: USA:New York; BronxPark

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ureaplasma sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_submitter: University of Manchester


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: North Carolina

ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Duke-Large

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: Throat


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Thermus sp.

ncbi_submitter: Montana State University


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: McGill University


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: whole insect

ncbi_organism_name: Spiroplasma sp. AdecLV25b

ncbi_submitter: University of Liverpool


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_level: Chromosome

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gallintestinimicrobium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: dtu national food institute


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Corynebacterium sp. YSMAA1_1_F7

ncbi_submitter: University of York


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_organism_name: Pantoea allii

ncbi_submitter: University of Georgia


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Cryomorphaceae bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chungnam national university


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp2 AA94

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp2 AA94

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Japan

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Meijo University faculty of pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: USA: Hawaii

ncbi_isolation_source: Heads

ncbi_organism_name: Erwinia sp. S59

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_isolation_source: roots

ncbi_organism_name: Streptomyces sp. SID2563

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Micropruina sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


gtdb_type_species_of_genus: t

ncbi_country: Germany: Stuttgart near lake Baerensee

ncbi_isolation_source: enrichment culture from a chitin containing soil sample from ant hill

ncbi_organism_name: Amantichitinum ursilacus

ncbi_submitter: Fraunhofer


ncbi_organism_name: Fusobacterium sp. 1001295B_180824_G3


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bologna


ncbi_organism_name: uncultured Rhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2086

ncbi_submitter: Broad Institute


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Waterline

ncbi_submitter: University of Basel


ncbi_isolation_source: Urine

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Corynebacterium lipophiloflavum DSM 44291

ncbi_submitter: Baylor College of Medicine


ncbi_country: Australia: Monaro; NSW

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: China

ncbi_isolation_source: Hospital surface

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Pakistan

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_country: South Korea

ncbi_isolation_source: Pig carcasses

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1528


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_submitter: Aggeu Magalhaes Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;s__Candidatus Daviesbacteria bacterium GW2011_GWB1_36_5


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: colon biopsy

ncbi_organism_name: Brachyspira aalborgi

ncbi_submitter: Karolinska Institutet


ncbi_country: USA: Chicago

ncbi_isolation_source: BAL

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum


ncbi_country: Austria

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__environmental samples;s__uncultured Candidatus Sumerlaeota bacterium


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: intestinal tract

ncbi_submitter: IST Austria


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Indian Ocean

ncbi_isolation_source: surface seawater

ncbi_organism_name: Neptunicella marina

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources.


ncbi_country: Spain

ncbi_isolation_source: clam

ncbi_organism_name: Arcobacter venerupis

ncbi_submitter: Universitat Rovira i Virgili


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Italy: Lake Garda

ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonas sp. FEMGT703P

ncbi_submitter: University of Trento


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli KTE200

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Germany: Hamburg-Reitbrook

ncbi_organism_name: Alphaproteobacteria bacterium UBA7691

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella sp. NW315

ncbi_submitter: Sichuan University


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: USA: Linn County; Oregon

ncbi_organism_name: Rathayibacter sp. AY2B1

ncbi_submitter: Oregon State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_strain_identifiers: ATCC 7966

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Aeromonadales;f__Aeromonadaceae;g__Aeromonas;s__Aeromonas hydrophila;sb__Aeromonas hydrophila subsp. hydrophila;x__Aeromonas hydrophila subsp. hydrophila ATCC 7966


ncbi_organism_name: Sphingobium sp. AEW010

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Peribacter riflensis

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__Candidatus Peribacter;s__Candidatus Peribacter riflensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;g__Candidatus Peribacter;s__Candidatus Peribacter riflensis


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_organism_name: Duganella rhizosphaerae

ncbi_submitter: Rhizosphere Ecology Team


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: China: Shanghai

ncbi_isolation_source: feet

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. SHSN009


ncbi_organism_name: Streptomyces albogriseolus

ncbi_submitter: BGI Research


ncbi_organism_name: Novosphingobium sp. SG916


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Rhizobium sp. ERR 1071


ncbi_country: Germany: Muencheberg

ncbi_isolate: bin s1

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Sorangium sp.

ncbi_strain_identifiers: bin s1

ncbi_submitter: Leibniz Centre for Agricultural Landscape Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Southwest University


ncbi_organism_name: Vibrio sp. V20_P4S3T152

ncbi_submitter: Nanjing Agriculture University


ncbi_country: United Kingdom: Kielder Forest

ncbi_isolation_source: blood

ncbi_organism_name: Bartonella taylorii

ncbi_submitter: The University of Basel


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: BGI


ncbi_country: USA: Alabama

ncbi_isolation_source: top soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2442

ncbi_submitter: Broad Institute


ncbi_country: Chile: Libertador Bernando O Higgins

ncbi_submitter: Ponitificia Universidad Catolica de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Pseudorhizobium pelagicum

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_isolate: S9 bin 6

ncbi_organism_name: Nostoc sp.

ncbi_strain_identifiers: S9 bin 6

ncbi_submitter: Duke University


ncbi_country: Canada: Liard River

ncbi_isolation_source: Hot Spring Sediment

ncbi_organism_name: Thermoanaerobaculaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SUEZ CANAL UNIVERSITY


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: vaginal metagenome


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium RIFCSPLOWO2_12_FULL_45_13


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: Porcine feces

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Seoul National University


ncbi_organism_name: Salmonella sp. NW804

ncbi_submitter: Sichuan University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Klebsiella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Streptomyces caniferus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Brevibacillus sp. SIMBA_040

ncbi_submitter: SIMBA


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Haemaphysalis qinghaiensis


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: stanford university school of medicine


ncbi_country: USA: AL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Staphylococcus saprophyticus


ncbi_organism_name: Bifidobacterium longum


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_assembly_name: freshwater MAG --- VK_bin-2468

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Kaistella rhinocerotis

ncbi_submitter: Korea University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Enterococcus sp. C21(2024)

ncbi_submitter: Northwest A & F University


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: uncultured Selenomonadaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Guangxi Zhang Autonomous Region

ncbi_isolation_source: plant

ncbi_organism_name: Ancylobacter mangrovi

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Eggerthella sp. 1_3_56FAA

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Norway: Tautra underwater ridge at Trondheim Fjord

ncbi_organism_name: Streptomyces sp. ADI98-10

ncbi_submitter: Bielefeld University


ncbi_organism_name: Niameybacter sp.


ncbi_organism_name: Phenylobacterium sp.


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Actinomyces sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Adiutrix sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Desulfarculia;o__Candidatus Adiutricales;f__Candidatus Adiutricaceae;g__Candidatus Adiutrix;x__unclassified Candidatus Adiutrix;s__Candidatus Adiutrix sp.


ncbi_country: USA

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Actinomycetes bacterium


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Escherichia coli 83972

ncbi_submitter: Baylor College of Medicine


ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto de Quimica


ncbi_country: Turkey

ncbi_isolation_source: Orontes river

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: France: Bretagne

ncbi_isolation_source: Poultry

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: Aarhus University


ncbi_country: China: Weihai

ncbi_isolation_source: microbial mats

ncbi_organism_name: Algoriphagus antarcticus

ncbi_submitter: Shandong Uniwersity at Weihai


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paracoccus yeei

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Planctomycetota bacterium


ncbi_country: Italy

ncbi_isolation_source: raw milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Slovenia

ncbi_isolation_source: vinegar

ncbi_organism_name: Novacetimonas pomaceti

ncbi_submitter: Faculty of Natural Sciences and Mathematics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis ATCC 8503

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis ATCC 8503


ncbi_country: USA: California

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: UC Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia: Pereira

ncbi_isolation_source: blood

ncbi_submitter: Universidad El Bosque


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Madagascar

ncbi_organism_name: Klebsiella sp. 01-6622

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Human (Stool)

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Poland

ncbi_isolation_source: soil

ncbi_organism_name: Catenulispora pinisilvae

ncbi_submitter: Nicolaus Copernicus University


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: USA: International Space Station

ncbi_isolation_source: Port crew quarters; bump out exterior aft wall Node 2

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Haemophilus sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yantai

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6540

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: Argentina

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Thiothrix sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Nitratifractor sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: USA: San Leandro; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: United Arab Emirates

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Danish Technical University


ncbi_organism_name: Anaerostipes hadrus


ncbi_organism_name: Fluviicola sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Halpernia sp.

ncbi_submitter: Ocean University of China


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: Kitasatospora sp. NPDC004614

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_submitter: University of California Berkeley


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;x__unclassified Candidatus Polarisedimenticolia;s__Candidatus Polarisedimenticolia bacterium


ncbi_genome_category: derived from single cell

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Smithella sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Sao Paulo


ncbi_country: United Kingdom: Cardiff

ncbi_isolation_source: Cerebral abscess

ncbi_organism_name: Actinomyces oris

ncbi_submitter: King's College London


ncbi_organism_name: Pediococcus inopinatus

ncbi_submitter: Food microbiology laboratory


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Seattle

ncbi_isolation_source: wound right shoulder humeral stem explant

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Pseudomonas sp. EA_105y_Pfl2_R69

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Turicimonas muris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SHENZHEN CHILDREN'S HOSPITAL


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Desulfatirhabdium butyrativorans

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Sneathia sp.

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_isolation_source: food

ncbi_organism_name: Salmonella sp. zj-f60

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Spain

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: MD

ncbi_isolation_source: laboratory strain

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: Urethral Swab

ncbi_submitter: SurvCARE


ncbi_isolation_source: human stool

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: South Korea

ncbi_isolation_source: mesotrophic artificial lake

ncbi_organism_name: Mucilaginibacter myungsuensis

ncbi_submitter: Korean Research Institute of Bioscience and Biotechnology


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Blackallbacteria;s__bacterium (Candidatus Blackallbacteria) CG17_big_fil_post_rev_8_21_14_2_50_48_46


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Sichuan University


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T72838

ncbi_submitter: Broad Institute


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Adlercreutzia mucosicola

ncbi_submitter: University of Toronto


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F53388


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Mangrove National Nature Reserve; Zhangjiangkou

ncbi_isolation_source: mangrove sediments

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Third Institute of Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Nankai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;s__Yersinia enterocolitica;sb__Yersinia enterocolitica subsp. palearctica;x__Yersinia enterocolitica subsp. palearctica 105.5R(r)


ncbi_organism_name: Neisseria elongata

ncbi_submitter: EMG


ncbi_organism_name: Hyphomonas atlantica

ncbi_submitter: Tang lab


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: rectum

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: University of Alberta


ncbi_isolation_source: plant tissue

ncbi_organism_name: Paenibacillus sp. GD4

ncbi_submitter: USDA-ARS


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Hominilimicola sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Bangladesh: Nandipara

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oxford University Clinical Research Unit


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Florida


ncbi_country: Mexico: Jalisco

ncbi_isolation_source: blood

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Universidad de Sonora


ncbi_country: USA: WA

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Washington


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Robiginitomaculum sp.

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: Campylobacter coli C9A1

ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptococcus parasanguinis


ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_organism_name: Bacteroides caccae


ncbi_organism_name: Chryseobacterium sp. Marseille-Q5410

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_organism_name: Candidatus Brocadiaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__unclassified Candidatus Brocadiaceae;s__Candidatus Brocadiaceae bacterium


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Minnesota Department of Health Infectious Disease Laboratory Submission Group


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Actinomycetes incertae sedis;x__ac1 cluster;s__Actinobacteria bacterium BACL15 MAG-120619-bin91


ncbi_isolation_source: Seawater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter sp. 1424608

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 1424608


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sapienza University of Rome


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Sichuan University


ncbi_country: China: Jinhua

ncbi_submitter: Jinhua Central Hospital


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Desulforudis sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Candidatus Desulforudaceae;g__Candidatus Desulforudis;x__unclassified Candidatus Desulforudis;s__Desulforudis sp.


ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_organism_name: Stenotrophomonas sp.


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_organism_name: uncultured Lactococcus sp.


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: IZSLER


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: RIMG, Kochi University


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: 5-63 micron

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Isoptericola sp. NPDC056578

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Prevotella sp.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Streptomyces globisporus


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: USDA


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_country: United Kingdom: Warwickshire

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: Thailand: Tao Dam Hot Spring; Khluang Wangchao National Park

ncbi_isolation_source: soil from hot spring

ncbi_organism_name: Aeribacillus pallidus

ncbi_submitter: Chulabhorn Graduate Institute


ncbi_country: Germany: Southern Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: BGI


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG14883

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Ruminococcus sp. 210702-SL.1.03

ncbi_submitter: University of Chicago


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Streptomyces caelestis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: Juan De Fuca Ridge Crustal Fluid

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__SCandidatus Aminicenantes bacterium Aminicenantia_JdfR_composite


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_country: Japan

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: India

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: vegetable

ncbi_organism_name: Obesumbacterium proteus

ncbi_submitter: University of Malaya


ncbi_organism_name: Marivivens sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_01_FULL_39_10


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Adlercreutzia equolifaciens


ncbi_assembly_name: Psychrobacter pasteurii CIP110853 assembly

ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: not available: not collected


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EBI


ncbi_organism_name: Brucella abortus NI274

ncbi_submitter: Broad Institute


ncbi_country: Brazil

ncbi_isolation_source: liver

ncbi_organism_name: Escherichia coli S17

ncbi_submitter: UNICAMP


ncbi_country: USA: AR

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_assembly_name: Rumen uncultured genome RUG10178

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_organism_name: Yersinia pestis

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhodospirillales bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NBC_00344

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Yancheng City; Jiangsu Province

ncbi_isolation_source: farm soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_organism_name: Staphylococcus pseudoxylosus


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Synechococcus sp. TMED187


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0077


ncbi_country: China

ncbi_isolation_source: ice core

ncbi_organism_name: Cryobacterium sp. M96

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_country: Chile: Santiago

ncbi_isolation_source: bovine

ncbi_submitter: Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_country: Tunisia

ncbi_submitter: ANSES


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: South Korea: Naju-si

ncbi_organism_name: Sphingomonas sp. AP4-R1

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_organism_name: Enterobacter sp. CPE_E890

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Japan

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: musty egg

ncbi_organism_name: Pseudomonas taetrolens

ncbi_submitter: Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM


ncbi_country: China: Sichuan

ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Henan University of Technology


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shantou University Medical College


ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R19(2017)

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B335;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_country: Russia:Sea of Okhotsk; near Iturup Island

ncbi_isolation_source: sea water

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: lake water

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC091682

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: chicken fecal

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: chicken fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_submitter: FDA


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Vermont

ncbi_isolation_source: Muskrat spleen

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A65

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: freshwater MAG --- Umea_bin-05561

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Ireland

ncbi_isolation_source: feaces

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: University College Cork


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin Swab

ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: United Kingdom: Herefordshire

ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: NIAB East Malling Research


ncbi_isolation_source: Human feces

ncbi_submitter: Shenzhen Center for Disease Control and Prevention


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_country: USA: Fresno County; California

ncbi_isolation_source: litter layer [ENVO:01000338]

ncbi_submitter: California State University Stanislaus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Acinetobacter baumannii 45002_10

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Vibrio cidicii

ncbi_submitter: University of Copenhagen, Faculty of Health and Medical Sciences


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Aarhus University


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Scripps Institution of Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Fuerstiella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Bacillus capparidis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Myroides phaeus

ncbi_submitter: Zhejiang university


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI


ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Lufeng County; Chuxiong City; Yunnan

ncbi_isolation_source: diarrhea piglets from a pig farm with 250 sows; farm located in southern China; surrounded by mountains; and has been in use for 16 years

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Center for Laboratory Medicine


ncbi_country: USA: South Carolina

ncbi_organism_name: Enterococcus sp. 3G6_DIV0642

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Streptomyces lavendulae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: USA

ncbi_organism_name: Mycobacterium avium

ncbi_submitter: University of Michigan Medical School


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 91

ncbi_submitter: SC


ncbi_country: Malaysia: Johor

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Deakin University


ncbi_country: Colombia: Risaralda

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China

ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB66

ncbi_submitter: Soochow University


ncbi_country: Hong Kong

ncbi_isolation_source: perianal

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: marine

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Washington DC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterocloster bolteae 90A5


ncbi_country: Brazil: Petrolina

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFMG


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: chicken caecal content


ncbi_organism_name: Clostridium sp. AF12-28

ncbi_submitter: BGI


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Proteobacteria bacterium UBA6156

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA6156


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: University of Wisconsin Hospital

ncbi_organism_name: Enterococcus faecalis EnGen0421

ncbi_submitter: Broad Institute


ncbi_isolate: SPRUCE 444

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_strain_identifiers: SPRUCE 444

ncbi_submitter: Georgia Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: EMG


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Paenisporosarcina sp. FSL H8-0542

ncbi_submitter: Penn State


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Nangjing agricultural university


ncbi_isolation_source: Food Associated Environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Flavonifractor sp.


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: cutting fluid

ncbi_organism_name: Pseudomonas oleovorans subsp. oleovorans

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Argentina: Vila; Santa Fe

ncbi_isolation_source: first pond of the AUR serial dairy industry stabilization pond system

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: INTA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Mexico

ncbi_isolation_source: Eggs

ncbi_organism_name: Stenotrophomonas sp. S39

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG12860

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AM22-3LB

ncbi_submitter: BGI


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Verrucomicrobium;s__Verrucomicrobium spinosum;x__Verrucomicrobium spinosum DSM 4136 = JCM 18804


ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Candidatus Brocadia sp. AMX2

ncbi_submitter: Peking University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp. AMX2


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Fretibacterium fastidiosum

ncbi_submitter: metaHIT


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Mediterraneibacter faecis


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya

ncbi_organism_name: Clostridiales bacterium UBA738

ncbi_submitter: University of Queensland


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Streptomyces griseoluteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Clostridiales bacterium UBA4644


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: New Zealand

ncbi_isolation_source: Diced lamb

ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Candidatus Binatota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;x__unclassified Candidatus Binatota;s__Candidatus Binatota bacterium


ncbi_organism_name: Francisella tularensis subsp. tularensis

ncbi_submitter: Northern Arizona University


ncbi_submitter: The General Hospital of the People's Liberation Army


ncbi_organism_name: Pseudomonas sp.


ncbi_country: USA: Philadelphia; PA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pennsylvania


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21230


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: Memorial Sloan Kettering Cancer Center


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: EMG


ncbi_organism_name: Nocardia vinacea


ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: USA: California

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Michigan State University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Emcibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: IMG-taxon 2657245369 annotated assembly

ncbi_organism_name: Stappia indica

ncbi_strain_identifiers: USBA 352

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_organism_name: Gordonibacter urolithinfaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Myxococcales bacterium UBA2376

ncbi_submitter: University of Queensland


ncbi_organism_name: Rothia aeria


ncbi_organism_name: Propionicimonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: India: Gangotri; Uttarakhand

ncbi_isolation_source: Soil

ncbi_organism_name: Paludisphaera soli

ncbi_submitter: JNTUH


ncbi_country: Canada

ncbi_isolation_source: vaginal microbiome

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: San Mateo; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_country: Spain: Aragon

ncbi_isolation_source: Almond leaf

ncbi_organism_name: Xanthomonas arboricola pv. pruni

ncbi_submitter: INIA


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: Rumen uncultured genome RUG12560

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pseudomonadales bacterium


ncbi_organism_name: Streptomyces griseoaurantiacus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Anhui province; Wuhu city

ncbi_isolation_source: wastewater

ncbi_organism_name: Leucobacter sp. wl10

ncbi_submitter: Anhui Normal University


ncbi_submitter: National Institutes of Health, Malaysia


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Leucobacter aridicollis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Frigoribacterium sp. PhB116

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Variovorax sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Asaia sp. HN010

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pantoea agglomerans


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Idiomarina sp. 34-48-12


ncbi_country: USA: Colorado

ncbi_isolation_source: field

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: The Pennsylvania State University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Germany: Greifswald

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Queensland


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8430-2

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter sp. 766875

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 766875


ncbi_country: France

ncbi_isolation_source: Cheese

ncbi_organism_name: Psychrobacter namhaensis

ncbi_submitter: INRA


ncbi_country: Russia: Moscow

ncbi_isolation_source: aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SRCAMB


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Medford; MA

ncbi_isolation_source: The running surface of an indoor track field house

ncbi_organism_name: Curtobacterium sp. UCD-KPL2560

ncbi_submitter: Forsyth Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Coprococcus sp.


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Liaocheng

ncbi_isolation_source: urine

ncbi_submitter: University College London (UCL)


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Catenuloplanes niger

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Italy: Bologna

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: So Paulo

ncbi_isolation_source: Conjunctiva

ncbi_organism_name: Haemophilus influenzae biotype aegyptius

ncbi_submitter: Griffith University


ncbi_country: USA: OH

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Cereibacter sphaeroides

ncbi_strain_identifiers: DSM 158

ncbi_submitter: University of Applied Sciences Mittweida


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_submitter: The French Research Institute for Exploitation of the Sea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Rariloculaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Rariloculales;f__Candidatus Rariloculaceae;x__unclassified Candidatus Rariloculaceae;s__Candidatus Rariloculaceae bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Jiahui International Hospital


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Ornithinimicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin32

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: HIE bin32

ncbi_submitter: Monash University


ncbi_country: USA: Massachusetts

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium