ncbi_country: Turkey: Mersin

ncbi_isolation_source: Orchard

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Christensenella minuta

ncbi_submitter: Institut Pasteur


ncbi_assembly_level: Contig

ncbi_organism_name: Pectobacterium polaris

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: caecum

ncbi_organism_name: Alistipes sp. An54

ncbi_submitter: Veterinary Research Institute


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: South Korea: Chungnam National University; 99; Daehak-ro; Yuseong-gu; Daejeon

ncbi_isolation_source: Plant root

ncbi_organism_name: Streptomyces griseorubiginosus

ncbi_refseq_category: reference genome

ncbi_submitter: Chungnam National University


ncbi_assembly_level: Scaffold

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Lu'an People's Hospital


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_assembly_level: Chromosome

ncbi_country: China: Xinjiang

ncbi_isolation_source: rhizosphere soil of Alhagi

ncbi_organism_name: Chitinophaga alhagiae

ncbi_submitter: University of Science and Technology Beijing


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Sao Paulo; Serrana

ncbi_isolation_source: Blood from a Brazilian Purpuric Fever case

ncbi_organism_name: Haemophilus influenzae biotype aegyptius

ncbi_submitter: Institute of Biology - University of Campinas


ncbi_country: South Korea:Cheonan; Chungcheongnam-do

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: National Institute of Crop Science, RDA


ncbi_country: Turkey

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: USA: Barrington; Illinois

ncbi_isolation_source: sink

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Unenriched enriched sediment from core 3 20 to 25cm

ncbi_organism_name: Chlorobium sp.

ncbi_submitter: Northeastern University


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: uncultured Pseudodesulfovibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Chlamydia trachomatis L1/115

ncbi_submitter: Sanger Institute


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W88555

ncbi_submitter: Broad Institute


ncbi_country: Pakistan

ncbi_isolation_source: rhizospheric soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: NIBGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Australia: Montague Island

ncbi_organism_name: Escherichia coli

ncbi_submitter: OUTBREAK


ncbi_country: Brazil

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans 2VS1

ncbi_submitter: Cornell University


ncbi_country: Mexico

ncbi_isolation_source: intestines

ncbi_organism_name: Photorhabdus khanii subsp. guanajuatensis

ncbi_submitter: University of Bern

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_country: Pakistan: Vehari; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. VH_25

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Roseburia faecis

ncbi_submitter: SC


ncbi_organism_name: Aeromonas caviae


ncbi_organism_name: Alteromonas stellipolaris

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: Thailand: Khon Kean

ncbi_isolation_source: vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: RCEID, Khon Kaen University


ncbi_isolation_source: clinical - GI sample; not stool

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup;x__Salmonella enterica subsp. enterica serovar Braenderup str. CFSAN000756


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Desulfosporosinus sp. UBA4726

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: India: ICRISAT campus in Hyderabad

ncbi_isolation_source: compost [ENVO:00002170]

ncbi_organism_name: Streptomyces sp. KAI-26

ncbi_submitter: ICRISAT


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-2482

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Australia: Mount Beauty Pondage

ncbi_isolation_source: sediment

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Hungatella effluvii

ncbi_submitter: University of Copenhagen


ncbi_country: Russia: Sochi

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Russian Research Anti-Plague Institute Microbe


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Negativicoccus massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22454;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: China

ncbi_organism_name: Anabaena catenula FACHB-362

ncbi_submitter: South China Normal University


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Propioniciclava sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Urumqi;Xinjiang

ncbi_isolation_source: prepared checken wing from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


gtdb_type_species_of_genus: t

ncbi_country: Mediterranean Sea

ncbi_isolation_source: sea water

ncbi_organism_name: Nereida ignava

ncbi_strain_identifiers: CECT 5292

ncbi_submitter: UVEG


ncbi_isolation_source: acute necrotizing ulcerative gingivitis lesion

ncbi_organism_name: Treponema denticola

ncbi_strain_identifiers: OMZ 854

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: University of Surrey


ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Zymomonas mobilis subsp. pomaceae

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_organism_name: Streptomyces sp. NPDC058793


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: shandong university


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: bacterium spbL1type3-1

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: Streptomyces lasiicapitis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: burned soil

ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Wenyingzhuangia sp.

ncbi_submitter: Yantai University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Wound secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Great Boiling Springs; Gerlach; Nevada

ncbi_isolation_source: top 1 cm of 60 C hot spring sediment

ncbi_organism_name: Thermoflexus hugenholtzii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea

ncbi_organism_name: Sporosarcina sp. PTS2304

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_submitter: National Centre for cell Science


ncbi_organism_name: Pseudoalteromonas sp. BSi20429

ncbi_submitter: Shandong University


ncbi_organism_name: Lachnoanaerobaculum sanguinis

ncbi_submitter: RePHAGEN Co., Ltd


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Streptococcus agalactiae GB00654

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: nasal

ncbi_organism_name: Pasteurella multocida 1500C

ncbi_submitter: Moredun Research Institute


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Desulfarculaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Lelliottia amnigena


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Brazil

ncbi_isolation_source: swine homemade salami

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: South Africa

ncbi_isolation_source: peanut

ncbi_organism_name: Streptomyces sp. NRRL B-24085

ncbi_submitter: USDA/ARS/NCAUR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Sphingomonas psychrolutea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Canada: Lacombe

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: AAFC


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudoduganella danionis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil: Torres

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Federal University of Health Sciences of Porto Alegre


ncbi_organism_name: Paracoccus sp. NFXS7

ncbi_submitter: iBET

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. NFXS7


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli UMEA 3899-1

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- MJ1_bin-1025

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Brevefilum sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Brevifilum;x__unclassified Candidatus Brevefilum;s__Candidatus Brevefilum sp.


ncbi_country: Spain: Cantabria; Altamira Cave

ncbi_isolation_source: Cave wall

ncbi_organism_name: Pseudomonas sp. SBB6

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sao Paulo


ncbi_assembly_name: freshwater MAG --- Loc081215-8m_bin-1663

ncbi_organism_name: uncultured bacterium


ncbi_country: Arctic Ocean

ncbi_isolation_source: Arctic Ocean sediment

ncbi_organism_name: Colwellia sp. Arc7-D

ncbi_submitter: The First Institute of Oceanography, SOA


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas brenneri

ncbi_submitter: University of Copenhagen


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Serratia entomophila


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 81

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Brazil: Presidente Prudente

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Muriicola sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: Japan: Ehime

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. actinidifoliorum


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: water

ncbi_organism_name: Collimonas sp. UBA1456

ncbi_submitter: University of Queensland


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Canada: Waterloo

ncbi_isolate: SO_2017_CLC bin 8

ncbi_isolation_source: leachate from a composite leachate cistern at an active municipal landfill in Southern Ontario

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: SO_2017_CLC bin 8

ncbi_submitter: University of Waterloo


ncbi_country: Belgium

ncbi_isolation_source: Freshwater pond

ncbi_organism_name: Fictibacillus sp. 26RED30

ncbi_submitter: KU Leuven


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: EMG


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Moraxellaceae bacterium


ncbi_country: China:Shandong province

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Provincial Hospital Affiliated to Shandong University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Michigan

ncbi_organism_name: Paenibacillus sp. PvP091

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: seawater

ncbi_organism_name: Synechococcus sp. LTW-R

ncbi_strain_identifiers: LTW-R

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_country: USA: Alma; Bacon County; Georgia

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: USDA


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Pseudoflavonifractor sp.


ncbi_country: Pacific Ocean: Bering Sea

ncbi_isolation_source: Pacific plankton

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Xanthomarina gelatinilytica

ncbi_submitter: Ocean University of China


ncbi_assembly_name: Rumen uncultured genome RUG11329

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:242

ncbi_submitter: DTU


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Anaerostipes faecalis

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: soil

ncbi_organism_name: Comamonas sp. CMM01

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Waddliaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: India: Rajakkamangalam

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Streptomyces sp. CMSTAAHL-2

ncbi_submitter: Centre for Marine Science and Technology


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_organism_name: Gallionella sp. UBA6045

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA95

ncbi_submitter: Broad Institute


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Montreal

ncbi_isolation_source: 10^9 phage AR1 infection rep 4

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: McGill University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Holdemanella porci


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Endozoicomonas acroporae

ncbi_submitter: New York University Abu Dhabi


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Flavobacterium sp. FlaQc-51

ncbi_submitter: Universite Laval


ncbi_organism_name: Candidatus Arcticimaribacter sp.

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Arcticimaribacter;x__unclassified Candidatus Arcticimaribacter;s__Candidatus Arcticimaribacter sp.


ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Euzebyales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Vibrio harveyi


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Turkey

ncbi_isolation_source: WWTP

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: South Korea: Jeju

ncbi_organism_name: Caulobacter sp. 17J65-9

ncbi_submitter: Seoul Women's University


ncbi_assembly_name: Rumen uncultured genome RUG10107

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: North Carolina State University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus australis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-4055

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Inquilinus limosus DSM 16000

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Arab Emirates: Coast of the Arabian Gulf

ncbi_isolation_source: non-axenic culture of diatom

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: NYUAD


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_isolation_source: Faeces


ncbi_isolate: Lactobacillus rhamnosus

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: Lactobacillus rhamnosus

ncbi_submitter: Institute of Biotechnology, University of Helsinki


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_isolation_source: bean

ncbi_organism_name: Xanthomonas euroxanthea

ncbi_strain_identifiers: CFBP 7622


ncbi_isolation_source: Hospital

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 756476

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Bordetella pertussis


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonadaceae bacterium UBA7387


ncbi_country: Portugal

ncbi_isolation_source: urine

ncbi_submitter: UCIBIO/REQUIMTE, Laboratory of Bacteriology, Faculty of Pharmacy, University of Porto


ncbi_organism_name: Streptomyces coelicolor A3(2)

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-3939

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Morocco

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Spain: Madrid

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_assembly_name: freshwater MAG --- LJ_bin-1580

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_country: USA: Cincinatti

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Denmark

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_country: Viet Nam:Nam Dinh

ncbi_isolation_source: river water

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Lautropia mirabilis

ncbi_submitter: EMG


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Sulfobacillus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_isolation_source: Tissue Shoulder Right HUMERAL MEMBRANE No. 1

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Canada: Manitoba

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_country: South Korea: Gwang-Ju

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_isolation_source: Gastroenteritis patient

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: UNIVERSITY OF SHEFFIELD


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_country: Ireland

ncbi_isolation_source: seafood factory FBO2

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: wound

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Aquirufa regiilacus

ncbi_submitter: University of Innsbruck


ncbi_country: China: Central China Fuwai Hospital of Zhengzhou University

ncbi_isolation_source: Ascitic fluid from patient

ncbi_submitter: YangZhou university


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: Paludibacter sp.

ncbi_submitter: University of Michigan


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Oceanospirillales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Streptomyces sp. NPDC095817

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine Faeces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Macrococcoides bohemicum


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Sporomusaceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Streptomyces sp. HUAS ZL42

ncbi_strain_identifiers: HUAS ZL42

ncbi_submitter: Hunan University of Arts and Science


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_submitter: CHU Bicetre


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 2010-60-6511-5

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_submitter: Ruijin Hospital


ncbi_strain_identifiers: ATCC BAA-2111

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: Iowa

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Colorado State U


ncbi_organism_name: Roseicyclus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate and no molasses at 250 mg/L thiocyanate

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Serratia marcescens

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Phyllobacterium sp. SL163

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Sideroxydans sp.


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: ES

ncbi_submitter: Hebei Normal University of Science &Technology


ncbi_submitter: University of Nottingham


ncbi_organism_name: Nitratireductor sp. GCM10026969

ncbi_strain_identifiers: LNNU 199

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_organism_name: uncultured delta proteobacterium


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Falcaria lacertinaria


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1377

ncbi_submitter: Broad Institute


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Sphingobium abikonense NBRC 16140

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Brazil: Brasilia

ncbi_isolation_source: Cultivated from CCT190562S ATCC 14581

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Embrapa Genetic Resources and Biotechnology


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: SAHMRI


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Corynebacterium xerosis

ncbi_submitter: Loyola University Chicago


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-2820

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of pavia


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Italy: Lecco

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_country: South Korea: Jeonbuk province

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jeonbuk National University


ncbi_country: USA: New York

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Streptomyces spiralis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Terrimesophilobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Brazil:Rio Grande do Sul

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_assembly_name: freshwater MAG --- AM-2014-D6_bin-320

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: Australia: Melbourne

ncbi_isolation_source: other

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Australia

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: India: Jorhat Medical College and Hospital

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: CSIR NEIST


ncbi_country: China

ncbi_organism_name: Lederbergia galactosidilytica

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_country: USA: CA

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 3-475-03_S1_C2

ncbi_submitter: IGS


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: South Korea

ncbi_isolation_source: water

ncbi_organism_name: Hankyongella ginsenosidimutans

ncbi_submitter: Hankyong National University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Spain: Santander

ncbi_isolation_source: clinical

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Federal University of Bahia


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Prevotella sp. UBA4217

ncbi_submitter: University of Queensland


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: New Zealand: Christchurch

ncbi_submitter: University of Canterbury


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Leg

ncbi_organism_name: Achromobacter insolitus

ncbi_submitter: SC


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: China: Nanping City; Fujian Province

ncbi_isolation_source: dust

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R852;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Chile

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_country: Antarctica: Miers Dry Valley

ncbi_isolation_source: Hypolithon

ncbi_organism_name: Sphingomonas sp. Ant H11

ncbi_strain_identifiers: Ant H11

ncbi_submitter: Centre of Microbial Ecology and Genomics


ncbi_country: Russia

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Syntrophomonas sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: State College; Pennsylvania

ncbi_isolation_source: wild flies

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Cornell University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_country: USA: New York

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Halothiobacillus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: IMG-taxon 2639762633 annotated assembly

ncbi_organism_name: Pseudomonas moraviensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Merdivivens faecigallinarum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__Muribaculaceae incertae sedis;g__Candidatus Merdivivens;s__Candidatus Merdivivens faecigallinarum


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Germany: Landstuhl

ncbi_isolation_source: Surveillance

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Archangium gephyra

ncbi_strain_identifiers: PVMSAZ

ncbi_submitter: University of Mississippi


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_isolation_source: Mastitis Milk

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. dysgalactiae


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_isolate: AOP42_A1_surf _bin _28

ncbi_organism_name: Agrococcus casei

ncbi_strain_identifiers: AOP42_A1_surf _bin _28

ncbi_submitter: Genoscope


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: south Florida

ncbi_organism_name: Mesoplasma melaleucae

ncbi_submitter: Academia Sinica


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Caryophanaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Kaistella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Paraburkholderia sp. BR10923

ncbi_submitter: The James Hutton Institute


ncbi_isolation_source: human skin

ncbi_organism_name: Abiotrophia defectiva

ncbi_submitter: NIH/NHGRI


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_isolation_source: Tara Oceans DNA samples corresponding to size fractions for protist

ncbi_organism_name: Bacteriovorax sp. UBA1852

ncbi_submitter: University of Queensland


ncbi_organism_name: Thermosynergistes sp.

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Kouleothrix sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterococcus sp. DIV0765f

ncbi_submitter: Broad Institute


ncbi_organism_name: Polaribacter aestuariivivens

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_submitter: University of Abuja


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Sichuan University


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_submitter: CAU


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Kiel University


ncbi_organism_name: Pseudomonas laurylsulfatiphila

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Finland

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Saari 20

ncbi_submitter: University of Helsinki


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Streptomyces sp. NPDC047987

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: swab

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: China: Tibetan Plateau

ncbi_isolation_source: Tibetan Plateau lake

ncbi_organism_name: Arthrobacter sp. 9E18

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Morganella morganii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Inserm


ncbi_country: Brazil: Belem

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Spain: Asturias

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Cuba: Varadero

ncbi_isolation_source: Shore seawater

ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: University of Cambridge


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_organism_name: Cellvibrionales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Actinokineospora sp.


ncbi_country: Mexico: Mexico city

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Mexicano del Seguro Social CMN SigloXXI


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Terriglobales bacterium


ncbi_country: Argentina

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Colorado State U


ncbi_country: China: Yunnan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Technische Universiteit Delft


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22822;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Lentimicrobium sp.

ncbi_submitter: Nanyang Technological University


ncbi_country: United Kingdom

ncbi_isolation_source: Left guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Italy: Gulf of Naples

ncbi_organism_name: Oceanicaulis alexandrii

ncbi_submitter: Stazione Zoologica Anton Dohrn


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: oral lichen planus biopsy

ncbi_organism_name: Escherichia coli K-12

ncbi_submitter: Seoul National University


ncbi_organism_name: Enterobacter cloacae complex sp. GYL001

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. GYL001


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Poland: Gdansk

ncbi_isolation_source: BAL

ncbi_organism_name: Streptococcus sp. 477

ncbi_submitter: National Medicines Institute


ncbi_country: China: Hengshui

ncbi_isolation_source: river sediment

ncbi_organism_name: Novilysobacter selenitireducens

ncbi_submitter: Shandong University of Technology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: N


ncbi_organism_name: Escherichia coli

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Universidade Estadual do Norte Fluminense


ncbi_isolation_source: desert soil

ncbi_organism_name: Naasia sp. SYSU D00057

ncbi_strain_identifiers: SYSU D00057

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;g__Naasia;x__unclassified Naasia;s__Naasia sp. SYSU D00057


ncbi_country: Greece

ncbi_isolation_source: soil

ncbi_organism_name: Paenarthrobacter aurescens

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: Neobacillus niacini

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: China: Weihai

ncbi_isolation_source: gut

ncbi_organism_name: Agarivorans sp. B2Z047

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus sp. HMSC060D09

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Denmark

ncbi_isolation_source: cod fish

ncbi_organism_name: Photobacterium sp. NCIMB 13483

ncbi_strain_identifiers: NCIMB 13483

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Thailand: Ubon

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Gemmobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_submitter: Broad Institute


ncbi_country: Japan: Fukuoka

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Japan: Pallada Bay; Gulf of Peter the Great; Sea of Japan

ncbi_organism_name: Roseivirga ehrenbergii

ncbi_submitter: FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Pseudomonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Jiangsu

ncbi_isolation_source: Intestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Zhejiang University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_submitter: Uniwersytet Warminsko-Mazurski w Olsztynie


ncbi_country: China: Sichuan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_strain_identifiers: ScHy-b

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Solobacterium moorei


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Merdicola faecigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Merdicola;s__Candidatus Merdicola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Merdicola;s__Candidatus Merdicola faecigallinarum


ncbi_organism_name: Planktotalea arctica

ncbi_submitter: Yantai University


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Methylobacter sp.

ncbi_submitter: Michigan State University


ncbi_organism_name: Salmonella sp. NW850

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella sp. SAL03689

ncbi_submitter: Zhejiang university


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto de Biomedicina de Sevilla (IBIS)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil with plant cover day5_noCT

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin33

ncbi_strain_identifiers: MOJ bin33

ncbi_submitter: Monash University


ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Faecalimonas sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Oregon State University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: Rumen uncultured genome RUG245

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: India: Punjab

ncbi_isolation_source: Rice seed

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia: Sakhalin; Daginskiye Thermal Springs

ncbi_isolation_source: enrichment culture from terrestrial mud volcano

ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_assembly_name: IMG-taxon 2602042026 annotated assembly

ncbi_organism_name: Propionispira arboris

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_organism_name: Ideonella azotifigens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0773

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Creighton University


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Alcaligenes nematophilus

ncbi_submitter: Alex Ekwueme Federal University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: McGill University


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Enterobacter sp. CPE_E1214

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_submitter: Oklahoma State University


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: South Carolina

ncbi_isolation_source: pharyngeal mucosa

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes inops

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA: Boston; MA; USA

ncbi_organism_name: Staphylococcus aureus M1175

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Switzerland: Chaux-de-Fonds

ncbi_isolation_source: stream surface water

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Ureaplasma sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Infection

ncbi_submitter: Washington University


ncbi_country: Canada

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: France: Durance River

ncbi_isolation_source: fresh river water

ncbi_organism_name: Dickeya dadantii

ncbi_submitter: Sorbonne University


ncbi_organism_name: Streptomyces sp. NPDC056956

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_country: Mexico: Cuernavaca Morelos

ncbi_isolation_source: nodules

ncbi_organism_name: Rhizobium phaseoli

ncbi_submitter: Centro de Ciencias Genomicas, UNAM


ncbi_country: USA: Cambridge; MA; MIT

ncbi_organism_name: Escherichia coli

ncbi_submitter: MIT


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Xiamen University


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Oceanicaulis sp.

ncbi_submitter: University of Calgary


ncbi_submitter: University of Foggia


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus VET0136R

ncbi_submitter: Broad Institute


ncbi_country: China: Jiangsu

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Shanghai Veterinary Research Institute, the Chinese Academy of Agricultural Sciences


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Apeira syringaria


ncbi_country: USA: New York; NY

ncbi_submitter: MSKCC


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 34 - depth 50m

ncbi_organism_name: Candidatus Thioglobus sp. REDSEA-S12_B1

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp. REDSEA-S12_B1


ncbi_country: Ireland: Dublin

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Trinity College Dublin


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: China: Heilongjiang

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. G2

ncbi_submitter: Heilongjiang Academy of Agricultural Sciences


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus sp. CF4-3

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_organism_name: Bacillus cereus G9241

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus G9241


ncbi_country: China: Nagqu City Tibet autonomous region

ncbi_organism_name: Microbacterium sp. dk485

ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfurobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Proteiniphilum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_isolate: AOP24_B1_coeur _bin _1

ncbi_organism_name: Cellulosimicrobium funkei

ncbi_strain_identifiers: AOP24_B1_coeur _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Fluviicola sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Sutcliffiella horikoshii

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-151

ncbi_isolation_source: lake water

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Salmonella sp. NW722

ncbi_submitter: Sichuan University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Wilmar International Limited


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: BGI


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aurantimonas endophytica

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_submitter: Hospital Ramon y Cajal


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Enterococcus durans

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Corallincola platygyrae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Neisseria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: aquatic

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Dehalococcoidia bacterium UBA826


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin48

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: LAG bin48

ncbi_submitter: Monash University


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 3

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Wyoming


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_country: Canada:Athabasca Oil Sands

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteroidales bacterium UBA2267

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2267


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-2085

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-2471

ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Germany: Berlin

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Brazil: Parana

ncbi_organism_name: Paraburkholderia sp. CNPSo 3274

ncbi_strain_identifiers: CNPSo 3274

ncbi_submitter: Universidade Estadual de Ponta Grossa


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Chromobacterium piscinae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Rhodothermaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_assembly_name: Rumen uncultured genome RUG11450

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: New York State

ncbi_isolation_source: Black Creek Park

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Rochester Institute of Technology