ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with potato starch

ncbi_organism_name: Coprococcus catus

ncbi_submitter: Quadram Institute Bioscience


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_level: Contig

ncbi_organism_name: Bacteroides vicugnae

ncbi_submitter: University of Oklahoma


ncbi_country: China: Guangdong

ncbi_isolation_source: joint

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


gtdb_representative: t

ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Jacksoniibacteriota;s__Candidatus Jacksonbacteria bacterium RIFCSPLOWO2_02_FULL_44_20


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: ACVGO

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coriobacteriaceae bacterium TM04-33

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Lodz University of Technology


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: Center for Microbial Communities


ncbi_country: Turkey: Hatay

ncbi_isolation_source: Greenhouse

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Toronto Mississauga


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: freshwater MAG --- AM4_bin-012

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudarthrobacter sp. CCNWLW217

ncbi_submitter: Northwest A&F University


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_country: Colombia: Santander de Quilichao

ncbi_isolation_source: cassava fermentation tank

ncbi_organism_name: Prevotella sp. UBA5812

ncbi_submitter: University of Queensland


ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Flinders University; Bedford park; Adelaide

ncbi_isolation_source: surface sterilized root

ncbi_organism_name: Streptomyces adelaidensis

ncbi_refseq_category: reference genome

ncbi_submitter: Mahasarakham University

ncbi_type_material_designation: assembly from type material


ncbi_country: Lithuania

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Bacillota bacterium LCP21S3_G6

ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Bacillota bacterium LCP21S3_G6


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-07202

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Aeromonas sp. DSM 116730

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_submitter: Yangzhou University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Alcanivoracaceae bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus safensis

ncbi_submitter: BGI


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Oscillibacter sp. MSJ-31


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter nosocomialis P020

ncbi_submitter: National Taiwan University Hospital


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Switzerland

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Streptococcus sp. Marseille-P7375

ncbi_submitter: URMITE


gtdb_type_species_of_genus: t

ncbi_country: Russia: Siberia; Lake Doroninskoe

ncbi_isolation_source: saline soda lake

ncbi_organism_name: Rhodobaculum claviforme

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_country: China

ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter pylori HLJHP271

ncbi_submitter: BGI-shenzhen


ncbi_organism_name: uncultured delta proteobacterium


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 46 year old woman who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Zhejiang university


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_assembly_level: Chromosome

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Shewanella baltica OS183

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_46_10


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Pennsylvania


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter sp. AOR41_HL

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: Peripheral blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_assembly_name: freshwater MAG --- MJ120827B_bin-319

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Auburn University


ncbi_country: India

ncbi_organism_name: Aureimonas ureilytica

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Greenland: Baffin Bay

ncbi_isolation_source: surface marine sediments

ncbi_organism_name: Shewanella sp.

ncbi_submitter: University of Vienna


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pomona; CA

ncbi_isolation_source: Cecum

ncbi_organism_name: Bacillus sp. USDA818B3_A

ncbi_submitter: Western University of Health Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. USDA818B3_A


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Dethiobacteria bacterium


ncbi_organism_name: Lonepinella sp. MS14435

ncbi_submitter: The University of Queensland


ncbi_isolate: AOP29_E1_surf _bin _22

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP29_E1_surf _bin _22

ncbi_submitter: Genoscope


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_assembly_name: Rumen uncultured genome RUG12638

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: Shatin WWTPs_79 WWTPs influent

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: Taiwan

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: kaohsiung medical university


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Chryseobacterium culicis

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Planctomycetaceae bacterium


ncbi_country: China: Hangzhou

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: China: Gobi Desert

ncbi_isolate: GDC bin2

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: GDC bin2

ncbi_submitter: Monash University


ncbi_organism_name: Sphingobacterium multivorum


ncbi_country: France

ncbi_isolation_source: Roquefort Cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Bacteroides uniformis dnLKV2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus MISS6125

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Alteromonas macleodii


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: USA:TX; Houston

ncbi_isolation_source: sputum from a cystic fibrosis patient

ncbi_organism_name: Pantoea agglomerans Tx10

ncbi_submitter: University of Regina

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Pantoea;x__Pantoea agglomerans group;s__Pantoea agglomerans;x__Pantoea agglomerans Tx10


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Qipengyuania pacifica

ncbi_submitter: Tang lab


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Neisseria flavescens

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: McGill University


ncbi_country: France: Rhone-Alpes

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: China

ncbi_isolation_source: ICU

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Thauera sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Kitasatospora sp. NPDC018058

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: India

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Avimonas narfae

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Avimonas;s__Candidatus Avimonas narfae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avimonas;s__Candidatus Avimonas narfae


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Morganella morganii

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: CIP 702

ncbi_submitter: The University of Melbourne


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Candidatus Alistipes avistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pedobacter suwonensis


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_submitter: University of Zurich


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: PVC group bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_country: USA

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UC San Diego


ncbi_country: China: Chongqing

ncbi_isolation_source: feces

ncbi_organism_name: Tomitella gaofuii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: USA: Crew Resupply Vehicle

ncbi_isolation_source: CRV environmental surface

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: The German Federal Institute for Risk Assessment (BfR)


ncbi_country: China: Henan Province

ncbi_isolation_source: animal feces

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Yangzhou


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Pooled pig faecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. MA5143a

ncbi_submitter: CEBITEC


ncbi_country: Thailand

ncbi_organism_name: Kluyvera ascorbata

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_submitter: Christian Medical College


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Bangladesh

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Skovde


ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 2243A

ncbi_submitter: University of Exeter


ncbi_country: United Kingdom:East Birmingham

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Sediment

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UOL


ncbi_organism_name: Caldifermentibacillus hisashii

ncbi_submitter: Penn State


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_country: Colombia

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_country: Canada: Buffalo Point; MB

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Antarctica

ncbi_organism_name: Streptomyces sp. So13.3

ncbi_submitter: Universidad de La Frontera


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_submitter: University of Washington


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: Hospital wastewater

ncbi_submitter: Rudjer Boskovic Institute


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Alistipes sp.


ncbi_submitter: University of Oldenburg


ncbi_organism_name: Photorhabdus sp. RW14-46

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Brazil: Sao Paulo

ncbi_submitter: University of Sao Paulo


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China:Henan Province;Xinxiang.

ncbi_isolation_source: Wheatstraw

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Henan Academy of Agricultural Sciences


ncbi_submitter: Global Health Research Unit

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: EMG


ncbi_submitter: Palacky University Olomouc


ncbi_country: Germany: Bavaria

ncbi_isolation_source: high oxygen packaged beef steak (+ 3 CD; spoiled)

ncbi_organism_name: Dellaglioa carnosa

ncbi_submitter: Technische Universitaet Muenchen


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Mayotte

ncbi_isolation_source: water

ncbi_organism_name: Leptospira licerasiae

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: Niallia sp. FSL W8-0951

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Niallia;x__unclassified Niallia;s__Niallia sp. FSL W8-0951


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Egypt: Beni Suef; Naser

ncbi_isolation_source: root nodules

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: msa univeristy


ncbi_isolation_source: Distal colon


ncbi_country: Tanzania: Serengeti National Park

ncbi_isolation_source: skin

ncbi_organism_name: Treponema pallidum subsp. pertenue

ncbi_submitter: Masaryk University


ncbi_isolation_source: Pre-slaughter chicken

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: VIC2

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: University of queensland


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Candidatus Kuenenbacteria bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kueneniibacteriota;x__unclassified Candidatus Kuenenbacteria;s__Candidatus Kuenenbacteria bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_assembly_name: Rumen uncultured genome RUG12708

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Nasopharynx

ncbi_submitter: Toho University


ncbi_assembly_name: Rumen uncultured genome RUG10033

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: kimchi

ncbi_organism_name: Weissella cibaria

ncbi_submitter: World Institute of Kimchi


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Corynebacterium canis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Brucella melitensis bv. 1 str. Rev.1

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella melitensis;x__Brucella melitensis bv. 1;x__Brucella melitensis bv. 1 str. Rev.1


ncbi_assembly_name: Pantoea ananatis S7

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: AUSTRIAN INSTITUTE OF TECHNOLOGY


ncbi_assembly_name: freshwater MAG --- MJ130916A_bin-0129

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: New Zealand

ncbi_isolation_source: Shoot

ncbi_organism_name: Duffyella gerundensis

ncbi_strain_identifiers: AR

ncbi_submitter: AgriBio


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Elusimicrobiaceae bacterium


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Pectobacterium sp. CHL-2024

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Communicable Disease


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces celluloflavus

ncbi_strain_identifiers: NRRL B-2493

ncbi_submitter: University of Illinois


ncbi_organism_name: Hyphomicrobium sp.


ncbi_isolate: AOP35_05H_surf _bin _19

ncbi_organism_name: Brevibacterium yomogidense

ncbi_strain_identifiers: AOP35_05H_surf _bin _19

ncbi_submitter: Genoscope


ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: Germany: Karlsruhe

ncbi_organism_name: Rathayibacter rubneri

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA:New York;Manhattan

ncbi_isolation_source: Xenic protist cell culture

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: American Museum of Natural History


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Instituto Oswaldo Cruz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Zhejiang Province; Ximen Island

ncbi_isolation_source: seawater at sediment depth

ncbi_organism_name: Pseudoalteromonas sp. T1lg122

ncbi_submitter: Zhejiang University of Technology


ncbi_organism_name: Gemmatimonadota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: USA: Licking River

ncbi_isolation_source: surface water collection during the winter

ncbi_organism_name: Janthinobacterium sp. NKUCC08_JDC

ncbi_submitter: Northern Kentucky University


ncbi_organism_name: Balneolia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;x__unclassified Balneolia;s__Balneolia bacterium


ncbi_country: Switzerland

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_country: USA: North Carolina

ncbi_isolation_source: miscellaneous body fluid

ncbi_organism_name: Enterobacter hormaechei subsp. steigerwaltii

ncbi_submitter: JCVI


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Balcanica

ncbi_submitter: Massey University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_isolation_source: Mashed potatoes

ncbi_organism_name: Bacillus cytotoxicus


ncbi_organism_name: Bacillota bacterium


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Pelistega suis

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Phocoenobacter atlanticus subsp. atlanticus

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: cold seep

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Embleya sp. NPDC059267

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia

ncbi_isolation_source: dairy

ncbi_strain_identifiers: FRR B 2976

ncbi_submitter: Queensland Health


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Kingella kingae ATCC 23330

ncbi_submitter: Baylor College of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-3271

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: General Eye

ncbi_organism_name: Pseudomonas aeruginosa BL04

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pyogenes ABC020049545


ncbi_organism_name: Streptomyces sp. NPDC052127


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Malaysia: Perak

ncbi_isolation_source: ETT

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute for medical research


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Blautia wexlerae


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Gemella haemolysans

ncbi_submitter: EMG


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Distal colon

ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Viet Nam: Binh Thanh

ncbi_isolation_source: Oryza sativa; rhizosphere soil

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Mycoplasma sp. 21DD0294

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Micromonospora sp. NPDC005367

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea

ncbi_isolation_source: nuruk

ncbi_organism_name: Corynebacterium nuruki S6-4

ncbi_submitter: Kyungpook National University


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptomyces sp. NPDC059165


ncbi_assembly_name: freshwater MAG --- MJ110629A_bin-412

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Turkey: Adana

ncbi_isolation_source: Nursery

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Toronto Mississauga


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China agricultural university


ncbi_organism_name: Microcystis wesenbergii NRERC-220

ncbi_submitter: National Institute of Environmental Research


ncbi_country: New Zealand

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG14184

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: GA

ncbi_isolation_source: Young Chickens

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59544F

ncbi_submitter: FDA


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_country: USA: OR

ncbi_organism_name: Rhodococcus sp. 05-2256-B2

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 05-2256-B2


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_submitter: Miguel Servet University Hospital


ncbi_country: Canada: Fort McMurray; Alberta

ncbi_isolation_source: biofilm

ncbi_organism_name: Marinilabiliaceae bacterium UBA5213

ncbi_submitter: University of Queensland


ncbi_country: China: Nanchang; Poyang Lake

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_country: India

ncbi_organism_name: Pantoea stewartii subsp. indologenes

ncbi_strain_identifiers: NCPPB 2281

ncbi_submitter: University of Georgia


ncbi_submitter: Pennsylvania State University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Japan: Tochigi; Nishinasuno

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: France

ncbi_isolation_source: pesticide

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_organism_name: Clostridium sp.

ncbi_submitter: China Agricultural University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Acinetobacter sp.


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus


ncbi_organism_name: uncultured Veillonella sp.


ncbi_organism_name: Bacillus sp. JJ689

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JJ689


ncbi_organism_name: Musicola paradisiaca

ncbi_strain_identifiers: CFBP 4178

ncbi_submitter: NIVIP


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Lysobacter sp. ISL-42

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Beijing

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium HUM_7


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: Fudan University


ncbi_country: South Korea: Anseong-si

ncbi_isolation_source: soil

ncbi_organism_name: Frateuria flava

ncbi_submitter: Chung-Ang University


ncbi_country: Brazil

ncbi_isolation_source: wheat germ

ncbi_organism_name: Lactiplantibacillus plantarum subsp. plantarum

ncbi_submitter: Londrina State University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium RIFOXYA2_FULL_33_7


ncbi_country: China

ncbi_isolation_source: feces; evolved day7-4

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: China: Wenzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Shigella sp. FJ200704

ncbi_submitter: Fujian Medical University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Pelobacter sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Desulfohalobiaceae bacterium


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_submitter: Helmholtz Center Munich


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella histicola;x__Prevotella histicola JCM 15637 = DNF00424


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bdellovibrio sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Chirstian Medical College


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Nannocystaceae bacterium


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_country: Mexico

ncbi_isolation_source: wound

ncbi_submitter: UNAM


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Newcastle University


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: sludge from anammox bioreactor

ncbi_organism_name: Candidatus Brocadiaceae bacterium B188

ncbi_submitter: Radboud Universiteit Nijmegen

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__unclassified Candidatus Brocadiaceae;s__Candidatus Brocadiaceae bacterium B188


ncbi_organism_name: Geobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Anaeromyxobacter sp.


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Methylocystis sp.

ncbi_submitter: Northeastern University


ncbi_isolation_source: human gut

ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Colombia: Bolivar

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Dialister invisus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Luteimonas cucumeris

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Enterococcus sp. DIV1371a

ncbi_submitter: Broad Institute


ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of British Columbia


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. ZJHZ21_0075

ncbi_submitter: Zhejiang university


ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Cobetia marina

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: South Korea: Jeju

ncbi_isolation_source: Baengnokdam Summit Crater Area; Mt. Halla

ncbi_organism_name: Viridibacillus arvi

ncbi_submitter: Jeju National University


ncbi_submitter: Life Technologies

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mississippi;x__Salmonella enterica subsp. enterica serovar Mississippi str. A4-633


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Colombia

ncbi_isolation_source: Salt mine

ncbi_organism_name: Salifodinibacter halophilus

ncbi_strain_identifiers: USBA 874

ncbi_submitter: Universidad de Los Andes


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Rhodovarius sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus agalactiae serogroup III

ncbi_submitter: GSK Vaccines


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Netherlands

ncbi_isolation_source: meat

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NIZO Food Research BV


ncbi_organism_name: Ligilactobacillus murinus


ncbi_assembly_name: Rumen uncultured genome RUG10742

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: MT

ncbi_isolation_source: stream water

ncbi_organism_name: Pseudomonas syringae USA011

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae USA011


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan: Ishkawa

ncbi_submitter: Kanazawa University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Denmark: Hjorring

ncbi_isolation_source: activated sludge from Hjor_18-Q3-R7-51

ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Aalborg University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_organism_name: Lancefieldella parvula


ncbi_isolation_source: Acid mine drainage

ncbi_organism_name: Acidiferrobacter thiooxydans

ncbi_strain_identifiers: ZJ

ncbi_submitter: Central South University


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter coli

ncbi_submitter: SC


ncbi_country: Russia

ncbi_isolation_source: fermented milk (Koumiss; cow milk)

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: CIRM-BIA 106

ncbi_submitter: Brigham Young University


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture research council


ncbi_organism_name: Collinsella aerofaciens ATCC 25986

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Poland

ncbi_organism_name: Citrobacter sp. TBCS-15

ncbi_submitter: NanKai universit


ncbi_isolation_source: not known


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Plant Protection Research Institute


ncbi_assembly_name: freshwater MAG --- B4_bin-417

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Zunongwangia profunda


ncbi_isolation_source: human gut

ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: uncultured Enterobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 201

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 1603

ncbi_submitter: University of Calgary


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:i


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: Tang lab


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Tropheryma whipplei str. DigMusc17

ncbi_submitter: ebi


ncbi_organism_name: Leuconostoc suionicum

ncbi_submitter: Universite de Caen Normandie


ncbi_country: Brazil: Jarinu; Sao Paulo

ncbi_isolation_source: Plant xylem

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Japan:Chiba; Narashino; Mimomi 2; Mimomi-Hongo Park

ncbi_isolation_source: water

ncbi_organism_name: Geminocystis sp. NIES-3709

ncbi_submitter: Toyohashi University of Technology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Enterococcus sp. DIV2324

ncbi_submitter: Broad Institute


ncbi_organism_name: Plantibacter sp. YIM 135249

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Actinomycetota bacterium


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: bacterium

ncbi_submitter: University of Texas at Austin


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Planctomycetota bacterium


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_submitter: Kaust


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: EMG


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Morganella morganii

ncbi_submitter: Agroscope


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_organism_name: Candidatus Endolissoclinum faulkneri L5

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Candidatus Endolissoclinum;s__Candidatus Endolissoclinum faulkneri;x__Candidatus Endolissoclinum faulkneri L5


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_country: China

ncbi_isolation_source: Bruguiera gymnorhiza

ncbi_organism_name: Phycicoccus endophyticus

ncbi_submitter: Kyung Hee University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Schaalia odontolytica


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Shuikoushan; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: South china normal university


ncbi_organism_name: Bradyrhizobium sp. SZCCHNS2002

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: CRC RESIST


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD13874

ncbi_submitter: Broad Institute


ncbi_isolation_source: common green bottle fly Lucilia sericata

ncbi_organism_name: Vagococcus luciliae

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_isolation_source: Korean traditional salt-fermented seafood (ojingeojeot)

ncbi_organism_name: Staphylococcus sp. OJ82

ncbi_submitter: Korea University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Oak Ridge National Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: IMG-taxon 2700988695 annotated assembly

ncbi_organism_name: Chishuiella changwenlii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Rhizobium sp. SORGH_AS_0285

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Africa: Ngwelezane

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0075


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_organism_name: Pseudomonas sp. P9_2

ncbi_submitter: Technical university of Denmark


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Rhizobium hidalgonense

ncbi_submitter: Escuela Nacional de Ciencias Biologicas - IPN


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Bacillaceae bacterium

ncbi_submitter: Fudan University


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Russia: Nizhniy Novgorod

ncbi_isolation_source: wound discharge

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Brevundimonas sp. MYb27

ncbi_submitter: Zoological Institute, Kiel University


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: Zhejiang university


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 1236

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellophilus tesquorum

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium GW2011_GWF2_42_42


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Blastopirellula sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Paraburkholderia caledonica

ncbi_submitter: University of Illinois at Chicago


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain

ncbi_isolation_source: Hospital Universitario Gregorio Maranon (Madrid)

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CNAG-CRG


ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Leptolinea sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: Colon


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Hungatella sp.


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum


ncbi_country: United Kingdom

ncbi_isolation_source: sputum

ncbi_organism_name: Pandoraea apista

ncbi_submitter: Public Health England


ncbi_organism_name: uncultured Fusicatenibacter sp.


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Ithaca

ncbi_isolation_source: cows with mastitis at dairy farm

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: UNICAMP


ncbi_country: China: Guangzhou

ncbi_isolation_source: drinking water

ncbi_submitter: SouthChina Agriculture University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Victivallis sp.


ncbi_organism_name: Microcystis aeruginosa PCC 9717

ncbi_submitter: Genoscope CEA


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: ocean water at depth 2327m

ncbi_organism_name: Thalassolituus sp. UBA2535

ncbi_submitter: University of Queensland


ncbi_organism_name: Paraclostridium bifermentans ATCC 19299

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_strain_identifiers: NCP 165

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_isolate: Cupriavidus taiwanensis STM 6119

ncbi_organism_name: Cupriavidus taiwanensis

ncbi_strain_identifiers: Cupriavidus taiwanensis STM 6119

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Hyphomicrobiales bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vogeliibacteriota;s__Candidatus Vogelbacteria bacterium CG22_combo_CG10-13_8_21_14_all_37_9


ncbi_assembly_name: freshwater MAG --- Umea1_bin-3024

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: BILS


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_assembly_name: Rumen uncultured genome RUG11408

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 363

ncbi_submitter: SC


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas fragariae (ex Marin et al. 2024)


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: Russia: Moscow

ncbi_isolation_source: Kefir

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: ABK

ncbi_submitter: The Federal Research Centre "Fundamentals of Biotechnology" of the Russian Academy of Sciences


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China: Beijing

ncbi_isolation_source: Artificial municipal wastewater treatment

ncbi_organism_name: Candidatus Jettenia sp. AMX1

ncbi_submitter: Peking University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Jettenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Jettenia;x__unclassified Candidatus Jettenia;s__Candidatus Jettenia sp. AMX1


ncbi_country: Canada: Alberta

ncbi_organism_name: Campylobacter canadensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Marques de Valdecilla


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UFMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Pirellulaceae bacterium


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Iowa State University


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin N2.81

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_strain_identifiers: bin N2.81

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus LAMC0001

ncbi_submitter: Broad Institute


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0017


ncbi_country: China: Daqing

ncbi_isolation_source: water

ncbi_organism_name: Pseudoxanthomonas sp. GW2

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_country: Slovenia

ncbi_organism_name: Prevotella communis

ncbi_submitter: University of Ljubljana


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Micrococcales bacterium 32-70-13


ncbi_isolation_source: post chill chicken carcass

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Nigeria: Igboukwu

ncbi_isolation_source: sold in market

ncbi_organism_name: Citrobacter portucalensis

ncbi_strain_identifiers: Igbk 7

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna


ncbi_organism_name: Staphylococcus aureus W80013


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_country: USA: Hawaii

ncbi_organism_name: Leptospira interrogans str. 2002000632

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Taiwan

ncbi_isolation_source: bloodstream

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: USA

ncbi_isolation_source: Missouri Soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Ohio State university


ncbi_country: Spain

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Barcelona


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Butyricimonas sp. An62

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: United Kingdom

ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Australia

ncbi_isolation_source: Troups Creek Wetland

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Monash University


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: abscess

ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Sphingomonas aquatilis

ncbi_submitter: Tsinghua University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: USA: St. Louis

ncbi_isolation_source: arm tissue

ncbi_organism_name: Mycobacterium sp. MYCO198283

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: environmental swab

ncbi_submitter: US Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. 2780


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG053

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Aequorivita sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_assembly_name: Rumen uncultured genome RUG10669

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_organism_name: Ectopseudomonas mendocina

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: River Don

ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: UNIVERSITY OF SHEFFIELD


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: University of Washington


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB243_498N8

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Japan

ncbi_isolation_source: catheter urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: France

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris-Sud


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University