ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Homoserinimonas sp.

ncbi_submitter: Colorado State University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_level: Scaffold

ncbi_country: Ethiopia: Oromiya; Arisi; Shirka

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


gtdb_representative: t

ncbi_isolation_source: rhizosphere soil culture M52

ncbi_organism_name: Domibacillus sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Brazil: Joao Pessoa

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: Germany: Schenga

ncbi_isolation_source: Arbuscular mycorrhizae fungus

ncbi_organism_name: Pseudomonas sp. PSB18

ncbi_submitter: Leibniz-Institut fur Gemuse- und Zierpflanzenbau


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Achromobacter insolitus

ncbi_submitter: MRSN BI Team


ncbi_assembly_level: Complete Genome

ncbi_country: China

ncbi_isolation_source: rice leaf

ncbi_organism_name: Xanthomonas oryzae

ncbi_submitter: Institute of crop sciences, Chinese academy of agricultural sciences


ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Sphingomonas sp. TZW2008

ncbi_submitter: SOKENDAI (The Graduate University for Advanced Studies)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: India

ncbi_isolation_source: Plant rhizosphere

ncbi_organism_name: Kosakonia sp. HypNH10

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_country: Thailand: Phayao

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Faculty of Public Health


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Victivallales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Nanjing University


ncbi_country: USA: Moline; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Butyrivibrio sp.


ncbi_organism_name: Paracoccus niistensis

ncbi_refseq_category: reference genome

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Marinobacter salsuginis

ncbi_submitter: Tang lab


ncbi_country: Germany: Oligtrophic pond in Goettingen

ncbi_isolation_source: oligrotrophic pond

ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: Nicaragua: Managua

ncbi_isolation_source: corpus; stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: China: Sichuang

ncbi_isolation_source: aquarium water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Streptococcus suis YS39

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Bacillus cereus

ncbi_submitter: microbial pathogenic ecology group


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Patescibacteria group bacterium UBA2211

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA2211


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Spirulina sp. DLM2.Bin59

ncbi_submitter: University of Calgary


ncbi_organism_name: Streptomyces abikoensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA:New York; Morrisania

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Erwinia amylovora UPN527

ncbi_submitter: CeBiTec


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Mangrovibacterium sp.

ncbi_submitter: University of Waterloo


ncbi_country: Russia: Moscow

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: INRA


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Kyungpook National University


ncbi_country: China: Yulin; Guangxi

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WZ-12

ncbi_submitter: Yulin Normal University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Henan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_submitter: University of Wyoming


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Minesota

ncbi_submitter: NCTR/US FDA


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_assembly_name: Rumen uncultured genome RUG10451

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides cellulosilyticus


ncbi_country: USA: California

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Southern California


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Maricaulis sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Streptococcus anginosus

ncbi_strain_identifiers: SFAD 40

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_country: Cuba

ncbi_organism_name: Streptomyces sp. WAC 05379

ncbi_submitter: McMaster University


ncbi_country: USA: Tucson; AZ

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_organism_name: Enterococcus faecalis EnGen0280

ncbi_submitter: Broad Institute


ncbi_organism_name: Sphingomonas sp. DC3200b1

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater SAG --- RF-1857-SP43-464-D2_S2

ncbi_isolation_source: freshwater

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfoscipio geothermicus

ncbi_submitter: University of Bremen


ncbi_organism_name: Alteraurantiacibacter lauratis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;s__Candidatus Azambacteria bacterium RIFOXYD1_FULL_42_38


ncbi_organism_name: Candidatus Cloacimonas acidaminovorans

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__Candidatus Cloacimonas acidaminovorans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__Candidatus Cloacimonas acidaminovorans


ncbi_country: India: Kerala

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Comamonas sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bryobacterales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG14024

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG12671

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium tertium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Scardovia wiggsiae


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: FDA/CDC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Austria: Kremesberg 11

ncbi_isolation_source: rumen epithelial tissue

ncbi_organism_name: Campylobacter sp. CN_NA1

ncbi_strain_identifiers: Cn NA1

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_country: South Korea:Jinju

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: sputum

ncbi_submitter: Chunlab, Inc.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae UKKV901664


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_assembly_level: Chromosome

ncbi_country: Italy: Panarea

ncbi_isolation_source: algae

ncbi_organism_name: Gimesia algae

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Sri Lanka: Jaffna

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: Argentina: Neuquen Province

ncbi_isolation_source: forest soil

ncbi_organism_name: Paenibacillus xylanivorans

ncbi_submitter: INTA


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Inha University


ncbi_submitter: UMR 1137 IAME


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9199

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Acinetobacter baumannii AB_TG27323

ncbi_submitter: Translational Genomics Research Institute


ncbi_organism_name: Dyella humi

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__candidate division WOR-1 bacterium RIFOXYC2_FULL_41_25


ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: EMG


ncbi_organism_name: Truepera radiovictrix

ncbi_submitter: University of South Africa


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Zodletone Spring; Anadarko; OK

ncbi_isolation_source: spring sediment

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_country: Canada: Gatineau; Quebec

ncbi_isolation_source: Root nodule from soybean plant inoculated with root zone soil from Desmodium canadense

ncbi_organism_name: Bradyrhizobium symbiodeficiens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwest University


ncbi_country: France

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre pasteur du Cameroun


ncbi_country: China

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Crap-stick

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_isolation_source: soil denitrifier

ncbi_organism_name: Stutzerimonas degradans

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: Germany

ncbi_isolation_source: healthy cow feces

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: India: Vellore

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Australia: QLD9

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: University of queensland


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shanghai

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai JiaoTong University


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_isolation_source: waterfall

ncbi_organism_name: Nocardioides donggukensis

ncbi_submitter: Dongguk university


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-WM

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: South Korea

ncbi_isolation_source: Braised Spicy Chicken

ncbi_submitter: Food-borne Pathogen Omics Research


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Passaging

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Germany: Freiburg

ncbi_organism_name: Bartonella henselae

ncbi_submitter: University Hospital, Goethe University Frankfurt am Main, Germany


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Silage

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: EPFL


ncbi_submitter: EBI


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang Cancer Hospital


ncbi_submitter: Sichuan University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tepidanaerobacter sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Anand Agricultural University


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Burkholderia glumae BGR1

ncbi_submitter: Crop Functional Genomics Center


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Salmonella enterica CVM 43803 v1.0

ncbi_isolation_source: clinical sample

ncbi_submitter: FDA


ncbi_organism_name: Escherichia coli

ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: Poland

ncbi_isolation_source: feces

ncbi_submitter: Cross-sectoral framework for quality Assurance Resources for countries in the European Union – CARE - National Veterinary Research Institute (PIWET)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Germany

ncbi_isolation_source: plant root

ncbi_organism_name: Agrobacterium fabrum

ncbi_submitter: Beijing Forestry University


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidetes bacterium UBA1935

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA1935


ncbi_country: China

ncbi_isolation_source: seawater

ncbi_organism_name: Paenibacillus sp. P13VS

ncbi_submitter: Huaqiao University


gtdb_type_species_of_genus: t

ncbi_organism_name: Polycladomyces abyssicola

ncbi_submitter: Department of Bacteriology, Graduate School of Medicine, Osaka City University


ncbi_country: Czech Republic: Olomouc Region

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Charles University in Prague


ncbi_country: Belgium: Mechelen; Antwerp province

ncbi_isolation_source: Plant

ncbi_organism_name: Rosenbergiella collisarenosi

ncbi_submitter: Complutense University of Madrid


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea

ncbi_isolation_source: sediment

ncbi_organism_name: Salinisphaera orenii MK-B5

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_assembly_name: Rumen uncultured genome RUG13641

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Microbacterium sp. zg.Y818

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: soil

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Kansas State University


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Campylobacter devanensis

ncbi_submitter: University of Aberdeen


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Giprobiosintez


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolate: Human

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Human

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_isolation_source: caecum

ncbi_submitter: Max Rubner-Institut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;o__Eggerthellales;f__Eggerthellaceae;g__Adlercreutzia;s__Adlercreutzia equolifaciens;sb__Adlercreutzia equolifaciens subsp. celatus;x__Adlercreutzia equolifaciens subsp. celatus DSM 18785


ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Alabama; Tuscaloosa

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Auburn University


ncbi_organism_name: Amycolatopsis sp. NPDC051903

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Rhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: PUS

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_isolation_source: pickle

ncbi_organism_name: Levilactobacillus sp. 244-2

ncbi_submitter: Northeast Agricultural University


ncbi_country: China: nanchang

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Streptomyces venezuelae

ncbi_submitter: Korea Advanced Institute of Science and Technology(KAIST)


ncbi_country: United Kingdom:England


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: France: Centre

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Lebanon

ncbi_submitter: lebanese american university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Kerfeldbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;x__unclassified Candidatus Kerfeldbacteria;s__Candidatus Kerfeldbacteria bacterium


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Flemingiibacterium;s__Candidatus Flemingiibacterium merdigallinarum


ncbi_country: China: Nabangzhen

ncbi_isolation_source: Adult mosquito gut

ncbi_organism_name: Microbacterium sp. Ag1

ncbi_submitter: New Mexico State University


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Manchester


ncbi_country: China: Shanghai


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Belgium

ncbi_isolation_source: Zoo Antwerpen

ncbi_submitter: Faculty of Veterinary Medicine, Ghent University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Washington; DC

ncbi_isolation_source: Biofilm grown on the Cathode of a Microbial Fuel Cell (Biofilm MCL)

ncbi_organism_name: Proteobacteria bacterium UBA4498

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA4498


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Bryobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Vacaria; Rio Grande do Sul (RS) State

ncbi_isolation_source: roots

ncbi_organism_name: Bacillus safensis

ncbi_submitter: UFRGS


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-01429

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (64 uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: chicken caecal content


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Mobiluncus mulieris

ncbi_submitter: SC


ncbi_country: Colombia: Buenaventura

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Corporacion para Investigaciones Biologicas and J Craig Venter Institute


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED37

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED37


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_assembly_name: freshwater MAG --- Umea_bin-09120

ncbi_organism_name: uncultured beta proteobacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: 2377MB;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Idiomarina sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: France

ncbi_isolation_source: cheese rind

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_submitter: INRA


ncbi_country: Italy: Milano

ncbi_isolation_source: Respiratory sample

ncbi_submitter: University of Genoa


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Leifsonia sp. EB41

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: India: Unique Biotech Limited; Hyderabad

ncbi_isolation_source: Vagina of Healthy reproductive Indian woman

ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Unique Biotech Limited


ncbi_country: USA: IL

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_organism_name: Candidatus Onthoplasma faecipullorum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Christensenellales;f__Christensenellaceae;x__Christensenellaceae incertae sedis;g__Candidatus Onthoplasma;s__Candidatus Onthoplasma faecipullorum


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Lentibacillus songyuanensis

ncbi_submitter: Nanjing Agricultural


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Georgia

ncbi_isolation_source: week A1 calf 20 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Shaanxi

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_organism_name: Streptomyces sp. NPDC102441

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_country: France: department 62

ncbi_isolation_source: roasted chicken

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_country: USA

ncbi_isolation_source: HEPA air filter (JPL lab)

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Denmark

ncbi_isolation_source: wound; finger

ncbi_organism_name: Aggregatibacter aphrophilus

ncbi_submitter: Aarhus University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: Denmark: Odense

ncbi_isolation_source: Blood stream of bacteremia patient

ncbi_organism_name: Terrisporobacter othiniensis

ncbi_submitter: Odense University Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand

ncbi_isolation_source: diseased striped catfish

ncbi_organism_name: Flavobacterium covae

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_country: India

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: SaurashtraUniversity


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: enrichment of activated sludge from Daejeon WWTP

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: KAIST


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_submitter: University of Houston


ncbi_organism_name: Butyricicoccus pullicaecorum

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured bacterium


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 14d patty soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Peking university


ncbi_organism_name: Evtepia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Pseudomonas palmensis

ncbi_submitter: University of Georgia


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Jiangnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Variovorax sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: institute for medical research


ncbi_organism_name: [Clostridium] leptum


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Vampirovibrio sp.


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Nitrospinia bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: China: Luzhou

ncbi_isolation_source: no

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes communis

ncbi_submitter: University of Queensland


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Dashan Tin-Zinc Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Italy

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Sapienza University of Rome


ncbi_country: North Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Cellulophaga sp. HaHa_2_95

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Prevotella aurantiaca

ncbi_submitter: EMG


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Auckland


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: BIFSCo Region 3

ncbi_isolation_source: bovine hide

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1912


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Colorado

ncbi_isolation_source: wound

ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: CDC


ncbi_organism_name: Kaistella sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Norway

ncbi_isolation_source: kidney

ncbi_organism_name: Tenacibaculum finnmarkense genomovar finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Lentilitoribacter sp.


ncbi_country: China: 69 Yongding Road; Haidian District; Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: China Medical University


ncbi_organism_name: Roseburia hominis


ncbi_isolation_source: vagina

ncbi_organism_name: Oligella urethralis DNF00040

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Distal colon


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_submitter: Loyola University Chicago


ncbi_country: Spain

ncbi_isolation_source: Clam; Ruditapes decussatus

ncbi_organism_name: Vibrio breoganii

ncbi_strain_identifiers: CECT 7222

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Washington

ncbi_isolation_source: stool

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Thammasat University


ncbi_country: France

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institut Pasteur


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Microcystis sp. LE19-195.1E

ncbi_submitter: University of Michigan


ncbi_country: South Korea: Tongyeong

ncbi_isolation_source: coast water

ncbi_organism_name: Alteromonas sp. BMJM2

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_assembly_name: MSH 3

ncbi_organism_name: Pseudomonas aeruginosa str. MSH 3

ncbi_strain_identifiers: MSH 3

ncbi_submitter: University of Strathclyde

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas aeruginosa group;s__Pseudomonas aeruginosa;x__Pseudomonas aeruginosa str. MSH 3


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil

ncbi_isolation_source: Mesenteric Lymph Node

ncbi_submitter: Sao Paulo State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Thailand: Chaiyaphume

ncbi_isolation_source: Saccharum officinarum (sugarcane)

ncbi_organism_name: Microbispora sp. GKU 823

ncbi_strain_identifiers: GKU 823

ncbi_submitter: Actinobacterial Research Unit


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: gastrointestinal tract; foregut

ncbi_organism_name: Segatella salivae DSM 15606

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Segatella;s__Segatella salivae;x__Segatella salivae DSM 15606


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 6-175-07_S4_C3

ncbi_submitter: IGS


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: mucosa of vagina [UBERON:0004983]

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: TNO


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 263

ncbi_submitter: SC


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Massachusetts Eye and Ear


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium sp. YJN-G

ncbi_strain_identifiers: YJN-G

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: California; Riverside County; Temecula City

ncbi_organism_name: Wolbachia endosymbiont of Diaphorina citri

ncbi_submitter: Crop Disease, Pests, and Genetics Research Unit, San Joaquin Valley Agricultural Sciences Center


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Colombia: Santander

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: Sapsucker Woods swamp; Ithaca

ncbi_isolation_source: pond ferromanganese surface film

ncbi_organism_name: Leptothrix discophora

ncbi_submitter: Universidad de la Republica


ncbi_country: USA: Georgia

ncbi_isolation_source: Piedmont

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Candidatus Fonsibacter sp.

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;x__unclassified Candidatus Fonsibacter;s__Candidatus Fonsibacter sp.


ncbi_isolation_source: blood

ncbi_submitter: The University of Texas Health Science Center at Houston


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Canada: St-Malo; Quebec

ncbi_isolation_source: well water

ncbi_organism_name: Enterococcus quebecensis

ncbi_submitter: CDC


ncbi_isolation_source: soil with long-term accumulation of straw

ncbi_organism_name: Rummeliibacillus sp. G93

ncbi_submitter: Jiangxi Agricultural University


ncbi_isolation_source: intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: South Korea: Jeju

ncbi_isolation_source: rhizosphere soil on a cliff

ncbi_organism_name: Actinomadura sp. OS1-43

ncbi_submitter: BioPS Co., Ltd.


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Klebsiella aerogenes

ncbi_strain_identifiers: FDAARGOS 1442

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Ignatzschineria ureiclastica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Shenzhen

ncbi_organism_name: Roseburia sp. OM03-7AC

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Halomonas sp. AOP35-4E-18

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Kitasatospora sp. NPDC008050

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Algoriphagus sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: uncultured Dongia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: isolate

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Streptomyces griseoincarnatus


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: South Korea: Seoul

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yonsei University


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Adamsella avium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__;c__;o__;f__;g__Candidatus Adamsella;s__Candidatus Adamsella avium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;g__Candidatus Adamsella;s__Candidatus Adamsella avium


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: India: Chandigarh

ncbi_isolation_source: Male Nares

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Japan: Osaka

ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_country: Russia: Moscow

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample from Guillain-Barre syndrome patient

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;s__Candidatus Portnoybacteria bacterium RIFCSPHIGHO2_12_FULL_40_11


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0355

ncbi_submitter: Broad Institute


ncbi_country: Argentina: Vila; Santa Fe

ncbi_isolation_source: first pond of the AUR serial dairy industry stabilization pond system

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: INTA


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Denmark: Slagelse

ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Italy

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Austria: Tyrol

ncbi_organism_name: Escherichia coli

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Amsterdam


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis OFXR-6


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Chicoutimi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom

ncbi_submitter: UB


ncbi_organism_name: uncultured Lentisphaeraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruthenibacterium sp.


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Irradiated ground pork and beef

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus;s__Deinococcus radiodurans;x__Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539


ncbi_country: Germany

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Hospital Frankfurt


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Caldisericaceae bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Acidimicrobiia bacterium


ncbi_organism_name: Leptotrichia shahii

ncbi_submitter: EMG


ncbi_isolation_source: fecal composite of dairy cows

ncbi_submitter: USDA


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Cyanobacteria bacterium REEB446

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium REEB446


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_submitter: CAU


ncbi_organism_name: Streptococcus sp. 19428wC2_LYSM12


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: INRA


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-239

ncbi_submitter: JCVI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Intestinibacter bartlettii


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0039

ncbi_submitter: Broad Institute


ncbi_country: Australia

ncbi_isolation_source: Dairy

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University College Cork


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae


ncbi_submitter: Zhejiang University


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: National Institutes of Health


ncbi_country: Canada: Guelph

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Sungkyunkwan University


ncbi_organism_name: Erysipelotrichaceae bacterium I46

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Minnesota

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: University of Exeter


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: Parabacteroides johnsonii


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Pediococcus inopinatus

ncbi_submitter: Food microbiology laboratory


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: China: Lake Taihu

ncbi_isolation_source: cyanobacterial bloom water

ncbi_organism_name: Novosphingobium sp. ERN07

ncbi_submitter: Shenzhen International Graduate School, Tsinghua University


ncbi_country: Russia: Moscow

ncbi_isolation_source: digestive system

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: SRCAMB


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2711

ncbi_submitter: University of Queensland


ncbi_country: Spain: Alfacada pond; Ebro delta; Tarragona

ncbi_isolation_source: epidermal mucus of Anguilla anguilla fishes in Ebro delta

ncbi_organism_name: Sphingobacterium thalpophilum


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Treponema sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: swine finishing facility waste

ncbi_organism_name: Nitratidesulfovibrio vulgaris

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Teagasc


ncbi_organism_name: Buchnera aphidicola (Myzus persicae)

ncbi_strain_identifiers: Gillespie

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. SAL04206

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Candidatus Kuenenia sp.

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__environmental samples;s__uncultured Candidatus Kuenenia sp.


ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Allobaculum sp.

ncbi_submitter: Wilmar International Limited


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: VETUNI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Okayama University


ncbi_organism_name: Streptomyces sp. NPDC088253

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: bacterium HR37

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cb004

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Gordonia aichiensis

ncbi_submitter: Gordonia


ncbi_country: China: Heyuan City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: terrestrial

ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: Belgium

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: GBBC 1071

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_country: Costa Rica: Golfito

ncbi_isolation_source: cuticle from social wasp

ncbi_organism_name: Tsukamurella sp. 8F

ncbi_submitter: Universidad de La Frontera


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Seoul National University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_organism_name: Dialister invisus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: CFSA


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_organism_name: Limibacillus halophilus

ncbi_strain_identifiers: CECT 8803

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: China Agricultural University


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D10_bin-0106

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_isolation_source: not provided

ncbi_organism_name: Olsenella sp. oral taxon 807

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella;x__unclassified Olsenella;s__Olsenella sp. oral taxon 807


ncbi_country: Switzerland

ncbi_isolation_source: Tete de Moine

ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: University of Bern


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_organism_name: Rossellomorea aquimaris

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Irapuato


ncbi_country: South Africa: Rietvlei

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0089

ncbi_submitter: Broad Institute


ncbi_country: Saudi Arabia:Riyadh

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_country: Czech Republic: Sumava

ncbi_isolation_source: Coniferous forest soil

ncbi_organism_name: Silvibacterium bohemicum

ncbi_submitter: Institute of Microbiology of the AS CR


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1529


ncbi_country: France

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_isolation_source: blood

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Sri Sathya Sai Institute of Higher Learning


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas gingeri

ncbi_submitter: Wageningen University & Research


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_country: USA: New York

ncbi_isolation_source: potable water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_country: USA: WA

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp A-26

ncbi_strain_identifiers: Hp A-26

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Actinomyces gerencseriae


ncbi_organism_name: Emergencia timonensis


ncbi_country: USA: NY

ncbi_organism_name: Bordetella holmesii


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of Ottawa


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Bacillus subtilis subsp. natto

ncbi_strain_identifiers: Bacillus subtilis 'natto'

ncbi_submitter: Lawrence Berkeley National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. natto


ncbi_assembly_name: Paenibacillus senegalomassiliensis

ncbi_organism_name: Paenibacillus senegalimassiliensis

ncbi_submitter: URMITE


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: liver

ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Streptomyces hesseae

ncbi_submitter: Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_country: South Korea:Seoul

ncbi_isolation_source: Straw bedding samples at chicken farm

ncbi_submitter: Konkuk university


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: China: Luzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_assembly_name: Clostridium bouchedurhonense

ncbi_organism_name: Clostridium sp. AT4


ncbi_country: Australia: VIC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Thermodesulfovibrionia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Falsarthrobacter nasiphocae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangdong


ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Sphingomonas sp. 4RDLI-65

ncbi_submitter: University of Washington


ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: China: Qinghai Province

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Corynebacterium sp. 366

ncbi_submitter: China CDC


ncbi_country: China: Anhui; Maanshan

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: wound neck

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA-ARS-USMARC


ncbi_organism_name: Rubrivivax gelatinosus

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_organism_name: Helicobacter pylori


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA

ncbi_isolation_source: HIV infected cell supernatant

ncbi_organism_name: Mycoplasmopsis fermentans MF-I2

ncbi_submitter: IGS


ncbi_submitter: big

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus;x__Streptococcus equi subsp. zooepidemicus ATCC 35246


ncbi_isolation_source: sink aerator

ncbi_organism_name: Citrobacter freundii CFNIH1

ncbi_submitter: NISC


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom: Worcestershire

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics


ncbi_organism_name: Xanthomonas arboricola pv. pruni

ncbi_submitter: North Carolina State University


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Phycisphaera sp.


ncbi_organism_name: Fusicatenibacter sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: CSIRO


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_isolation_source: wastewater metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Switzerland

ncbi_isolation_source: raw sausage

ncbi_submitter: University of Leicester


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_isolation_source: food

ncbi_submitter: FDA/CFSAN


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_country: Belgium

ncbi_organism_name: Actinobacillus equuli subsp. haemolyticus

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bacteroides finegoldii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas sp. CCI2.4

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_organism_name: Eubacteriaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_isolation_source: human skin

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: NIH/NHGRI


ncbi_isolate: WAMFH

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Retail Deli

ncbi_submitter: Cornell University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: Germany: North Sea

ncbi_organism_name: Arcanobacterium phocisimile

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0307

ncbi_submitter: Broad Institute


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: China: Shanghai

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Mexico: Jalisco

ncbi_isolation_source: blood

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Universidad de Sonora


ncbi_assembly_name: IMG-taxon 2690315619 annotated assembly

ncbi_organism_name: Pantoea sp. YR525

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: University of Waterloo