ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 56 year old woman who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


gtdb_representative: f

ncbi_assembly_level: Complete Genome

ncbi_country: China: Guangdong; Zhanjiang

ncbi_isolation_source: water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Guangdong Ocean University


ncbi_assembly_level: Contig

ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Nottingham


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Utah

ncbi_isolation_source: desert soil

ncbi_organism_name: Gloeocapsa sp. UFS-A4-WI-NPMV-4B04

ncbi_submitter: University of California, Riverside


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_organism_name: Oliverpabstia sp.


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Eggerthella sp.


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nitrotoga sp.

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp.


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Nitrosopumilus sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: VHProbi F11

ncbi_submitter: Nutrition &Health Technology Center


ncbi_country: China

ncbi_organism_name: Salmonella sp. H20-240

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Michigan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Case Western Reserve University


ncbi_organism_name: Streptomyces umbrinus

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: India

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Thammasat university


ncbi_country: China: Nanchang

ncbi_organism_name: Micromonospora haikouensis

ncbi_submitter: Jiangxi Normal University


ncbi_isolation_source: crude oil-contaminated soil

ncbi_organism_name: Enterobacter sp. ODB01

ncbi_submitter: Hunan Agricultural University


ncbi_organism_name: Yersinia pestis D1982001

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


gtdb_type_species_of_genus: t

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Basel

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: honeybee gut

ncbi_organism_name: Apilactobacillus zhangqiuensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 412

ncbi_organism_name: Staphylococcus gallinarum

ncbi_strain_identifiers: SNUC 1244

ncbi_submitter: University of Calgary


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: China-Japan friendship hospital


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Yellowstone National Park

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R897;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Belgium: Ghent

ncbi_organism_name: Xanthobacter sp. NFM-89

ncbi_submitter: Ghent University


ncbi_organism_name: Leptolyngbya sp. PL-A3

ncbi_submitter: Institute of Hydrobiology


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola paurosaccharolyticus;x__Phocaeicola paurosaccharolyticus JCM 15092


ncbi_isolation_source: intestinal content

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: ChinaCDC


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: South Korea: Seoul

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Erysipelothrix sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of Lincoln


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: Pseudomonas aeruginosa Pred

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Pred

ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology


ncbi_assembly_level: Chromosome

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Achromobacter genome submissions


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Academia Sinica


ncbi_country: USA:Alaska; North Slope; Kuparuk formation

ncbi_isolation_source: oil reservoir sample K2

ncbi_organism_name: Clostridia bacterium 41_269

ncbi_submitter: Lawrence Berkeley National Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__unclassified Clostridia;s__Clostridia bacterium 41_269


ncbi_country: USA: San Mateo; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: blood from hospitalized preterm neonate

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: freshwater MAG --- Loc090519-8-7m_bin-0000

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: University of Washington


ncbi_country: Mozambique

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: SC


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: milk

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: Rhizobium esperanzae

ncbi_strain_identifiers: SEMIA 487

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Afghanistan

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: France: Limoges

ncbi_submitter: Universite Paris Sud


ncbi_country: Bulgaria

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Waterline

ncbi_submitter: University of Basel


ncbi_country: Brazil

ncbi_isolation_source: Homemade Mayonnaise

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: California; Middletown

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Australia: Victoria

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: CSIRO


ncbi_organism_name: uncultured Lentisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_strain_identifiers: ATCC 25923 WZlab

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Limosilactobacillus fermentum FTDC8312

ncbi_submitter: Indian Institute of Technology, Mandi, HP, India


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: freshwater

ncbi_organism_name: Aquitalea sp. USM4

ncbi_submitter: Universiti Sains Malaysia


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Monash University


ncbi_country: China

ncbi_submitter: Zhejiang University


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Switzerland: Basel

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_organism_name: Bacillus cereus AH1273

ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus AH1273


ncbi_organism_name: Oceaniferula sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_isolation_source: Boiler

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Viet Nam: Hoai Duc; Ha Noi

ncbi_isolation_source: soil from tomato plant

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: ENDOBICA


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Broad Institute


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli KTE185


ncbi_isolation_source: soil

ncbi_organism_name: Nocardia jinanensis NBRC 108249

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Enterobacter sp.


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Germany

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus GGMC6043


ncbi_organism_name: Jiangellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mycolicibacterium sp. 120270

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Sphingobacterium spiritivorum

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_organism_name: Kitasatospora sp. NPDC059973

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidobacterium sp.


ncbi_submitter: Novome Biotechnologies


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Flagellimonas alginolytica

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_organism_name: Streptomyces sp. NPDC127069


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Kingston

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: USA: Wisconsin

ncbi_isolation_source: root nodule

ncbi_submitter: University of Minneosta


ncbi_country: France

ncbi_isolation_source: periotenial fluid from infant with NECIII

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces sviceus


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Microbacterium sp. USHLN186

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_organism_name: Brachybacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: CHU Montpellier


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE76

ncbi_submitter: Broad Institute


ncbi_country: China: Tianjin

ncbi_isolation_source: salt water

ncbi_organism_name: Salinivibrio kushneri

ncbi_submitter: Beijing University of Chemical Technology


ncbi_country: USA: Louisiana

ncbi_isolation_source: sugarcane factory

ncbi_organism_name: Leuconostoc suionicum

ncbi_submitter: USDA-ARS


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Chile: Santiago

ncbi_isolation_source: bovine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Blastocatellia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: rectal swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux - La Balme-Les Grottes


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_assembly_name: freshwater MAG --- MJ120716A_bin-0469

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: 'Nostoc azollae' 0708

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: United Kingdom

ncbi_isolation_source: Laboratory strain; mutant of Pseudomonas putida NCIMB 11767

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Queens University Belfast


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium sporogenes


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: UAE University


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Decubitus Pressure Ulcers

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: P37D0 ESCAFLOR

ncbi_submitter: CHU Nimes


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Neorhizobium sp. UBA3556

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_isolation_source: Small intestine

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: San Diego County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Ukraine: Lvov

ncbi_isolation_source: crude oil-contaminated soil

ncbi_organism_name: Gordonia alkanivorans

ncbi_submitter: IBPM RAS


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Chile

ncbi_isolation_source: kidney

ncbi_submitter: University of Texas at San Antonio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Piscirickettsiaceae;g__Piscirickettsia;s__Piscirickettsia salmonis;x__Piscirickettsia salmonis LF-89 = ATCC VR-1361


ncbi_country: Colombia: Risaralda

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Streptomyces sp. NPDC019937

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Boston

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: USA: Georgia

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Hylemonella sp.

ncbi_submitter: University of Utah


ncbi_assembly_name: Next Generation Sequence Analysis

ncbi_country: USA: Loyalsock Creek

ncbi_isolation_source: Freshwater Creek

ncbi_organism_name: Flavobacterium sp. KJJ

ncbi_strain_identifiers: KJJ

ncbi_submitter: GCAT-SEEK


ncbi_country: USA:New York; Riverdale

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Soil in antimony mining area

ncbi_organism_name: Pseudomonas sp. AO-1

ncbi_submitter: Hunan University of Science and Technology


ncbi_country: China: Qinghai

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Proluteimonas flavola

ncbi_submitter: Chinese academy of forestry


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_country: Czech Republic: Hradec Krlov

ncbi_isolation_source: stool (rectal swab)

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Charles University in Prague


ncbi_country: China

ncbi_isolation_source: secretion

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Argentina

ncbi_submitter: JMI Laboratories

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_isolation_source: human gut

ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Defluviitoga tunisiensis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Streptomyces sp. NPDC013012

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. SAL04268

ncbi_submitter: Zhejiang university


ncbi_organism_name: Streptomyces albus


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Nevada, Reno


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Enterobacter cloacae complex sp. CDL009

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. CDL009


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: CSIR-National Institute of Oceanography(CSIR-NIO), Regional Centre, Mumbai, India


ncbi_organism_name: Microbacterium sp. NPDC090225


ncbi_organism_name: Succinivibrionaceae bacterium


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: cecum

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Quadram Institutte


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Patescibacteria group bacterium UBA4664

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA4664


ncbi_organism_name: uncultured bacterium


ncbi_country: South Korea: Chungcheongnam-do

ncbi_isolation_source: Chinese cabbage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Korea University Graduate School


ncbi_isolation_source: anaerobic effluent of swine manure

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: Iraq

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Maricaulis virginensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: Shewanella sediminis HAW-EB3

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: USA: Bethesda

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eggerthella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: bioreactor

ncbi_organism_name: Acetobacterium sp. UBA5834

ncbi_submitter: University of Queensland


ncbi_organism_name: Nioella sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: Rochester

ncbi_isolation_source: sap

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Holdemanella biformis

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- D-1_bin-045

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Marinovum sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Australia: Victoria

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Streptomyces sp. NPDC047065

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Sri Lanka:Awissawella

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Rajarata University of Sri lanka


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: United Kingdom

ncbi_organism_name: Escherichia coli

ncbi_submitter: Swansea University


ncbi_organism_name: Streptococcus parasanguinis CC87K

ncbi_submitter: Broad Institute


ncbi_country: Hong Kong: Telegraph Bay

ncbi_isolation_source: Stormwater drain

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: stool

ncbi_organism_name: Anaerofustis stercorihominis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University College Cork


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: Instituto de Quimica


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF15-49

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPLOWO2_01_FULL_45_74


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Bacteroides uniformis


ncbi_country: China: Yunnan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Glutamicibacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Roseivirga sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Microcystis aeruginosa NIES-843

ncbi_submitter: Kazusa DNA Research Institute


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptacidiphilus sp. BW17

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Universidad San Sebastian


ncbi_isolation_source: Human fecal samples

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: microbial pathogenic ecology group


ncbi_isolation_source: faeces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Quadram Bioscience Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gemmatimonadales bacterium UBA7825

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Thymelicus sylvestris


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Proteon Pharmaceuticals SA


ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S126

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S126


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Federation unviersity


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad de Guadalajara


ncbi_organism_name: Escherichia coli

ncbi_submitter: Xianghu Laboratory


ncbi_organism_name: Streptomyces xanthochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Thiotrichales bacterium


ncbi_organism_name: Paraglaciecola sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: University of Stirling


ncbi_isolate: AOP18_D1_surf _bin _2

ncbi_organism_name: Cellulosimicrobium funkei

ncbi_strain_identifiers: AOP18_D1_surf _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Minisyncoccia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: Ghent University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: uncultured Mollicutes bacterium


ncbi_organism_name: Phreatobacter sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Bifidobacterium apri

ncbi_submitter: Veterinary Research Institute


ncbi_country: Brazil: Iranduba

ncbi_isolation_source: leaf litter

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: fish gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Acidaminobacteraceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Alloscardovia omnicolens

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: IL; Urbana

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. XY431

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Sordicultor fermentans

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy: d__Bacteria;p__Atribacterota;c__Atribacteria;o__Atribacterales;f__Candidatus Caldatribacteriaceae;g__Candidatus Sordicultor;s__Candidatus Sordicultor fermentans


ncbi_isolation_source: Factory - Packaging

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_country: Malaysia

ncbi_isolation_source: lake water

ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: University of Malaya


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacteriaceae bacterium UBA2677


ncbi_country: China: Guangxi Province

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: GUANGXI ACADEMY OF FISHERY SCIENCES


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_49_15


ncbi_isolation_source: Proximal colon


ncbi_organism_name: Streptomyces sp. NPDC056144

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P101P

ncbi_submitter: South China Agricultural University


ncbi_country: Colombia: Duitama

ncbi_isolation_source: non-complicated Urinary tract infection-Rotunary routinary medical examination

ncbi_submitter: Clinical Epidemiology from Colombia Research Group (GRECO-UPTC)


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_submitter: URMC


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_organism_name: Amycolatopsis deserti

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: sea sediment

ncbi_organism_name: Halomarinibacterium sedimenti

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: From pobuzih; fermented cummingcordia

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus pobuzihii;x__Ligilactobacillus pobuzihii E100301 = KCTC 13174


ncbi_country: United Kingdom: England

ncbi_isolation_source: wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: EMG


ncbi_isolate: Illumina sequencing of Elizabethkingia meningoseptica CIP111048

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Sweden

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Agency of Sweden


ncbi_assembly_name: Rumen uncultured genome RUG13480

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: Chicken eggshell surface

ncbi_organism_name: Turicibacter bilis

ncbi_submitter: USDA ARS


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Beckwithiibacteriota;s__Candidatus Beckwithbacteria bacterium GW2011_GWC1_49_16


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_country: United Kingdom: Scotland; Aberdeen

ncbi_isolation_source: seawater

ncbi_organism_name: Leeuwenhoekiella marinoflava

ncbi_submitter: Ghent University


ncbi_assembly_name: Rumen uncultured genome RUG10324

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Turicibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Anaerococcus sp.

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0858

ncbi_submitter: Broad Institute


ncbi_country: China: Beijing

ncbi_organism_name: Clostridium lentum

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: organs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: stool

ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Northeastern University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: AAFC


ncbi_isolation_source: In-house environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: Juan De Fuca Ridge Crustal Fluid

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium AC-335-A11


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: France

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: INSERM U1047


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Streamwood; Illinois

ncbi_isolation_source: drinking fountain

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China: Hunan

ncbi_organism_name: Pseudomonas rhizoryzae

ncbi_submitter: Institute of Agricultural Resources and Regional Planning,CAAS


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NPDC050439

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Beijerinckia mobilis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: National Centre of Microbiology


ncbi_organism_name: Caballeronia sp. LZ029

ncbi_submitter: University of Texas at Arlington


ncbi_organism_name: Micavibrio sp.

ncbi_submitter: University of Waterloo


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense genomovar finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sediment

ncbi_organism_name: Flagellimonas oceani

ncbi_submitter: Zhejiang Wanli University


ncbi_strain_identifiers: OB21 TSA 19

ncbi_submitter: Zymo Research Corporation


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Capnocytophaga canis

ncbi_submitter: Amager and Hvidovre Hospital


ncbi_organism_name: Hyphomonadaceae bacterium


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: University of California San Francisco


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Streptomyces sp. NBC_01518

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Novilysobacter longmucuonensis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_assembly_name: freshwater MAG --- Umea2p3_bin-0240

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Marinobacterium sp.

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_assembly_name: RHODOP

ncbi_isolate: Rhodoplanes sp. P11

ncbi_organism_name: Rhodoplanes sp. P11

ncbi_strain_identifiers: Rhodoplanes sp. P11

ncbi_submitter: Centro Biologia Molecular Severo Ochoa (CBMSO)


ncbi_country: China

ncbi_isolation_source: garden soil at the Shanghai Institute of Plant Physiology and Ecology

ncbi_organism_name: Streptomyces sp. 4F

ncbi_submitter: Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, CAS


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Aurantimonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Taiwan: Yilan county

ncbi_isolation_source: gut

ncbi_organism_name: Fructobacillus apis

ncbi_submitter: Ming Chuan University


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: New Zealand: Taranaki

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: bacterium TMED217


ncbi_organism_name: Streptomyces tibetensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__candidate division WOR-1 bacterium RIFOXYA2_FULL_41_14


ncbi_organism_name: Escherichia coli

ncbi_submitter: NIH/NCI


ncbi_country: Germany

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0444

ncbi_submitter: Broad Institute


ncbi_country: Switzerland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_country: India: Parikud; Chilika Lake

ncbi_isolation_source: lake sediment

ncbi_organism_name: Rheinheimera pleomorphica

ncbi_submitter: School of Biotechnology, Kalinga Institute of Industrial Technology-KIIT (Deemed University)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangzhou

ncbi_isolation_source: button

ncbi_submitter: University of Birmingham


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_assembly_name: IMG-taxon 2524614644 annotated assembly

ncbi_organism_name: Globicatella sulfidifaciens DSM 15739

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 2 20 to 25cm

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: Tenacibaculum soleae

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Utah


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: MIT


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Syntrophomonas wolfei

ncbi_submitter: University of Queensland


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Guangxi

ncbi_isolation_source: gut

ncbi_strain_identifiers: BAMA 0321

ncbi_submitter: Harbin Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Greece: Epirus

ncbi_isolation_source: artisanal Greek Feta cheese

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Candidatus Enterosoma sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Enterosoma;x__unclassified Candidatus Enterosoma;s__Candidatus Enterosoma sp.


ncbi_organism_name: Pseudomonas sp. URIL14HWK12:I10

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Sri Lanka: Colombo

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: USA: Arizona

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. AZ10_KS36

ncbi_submitter: Emory University


ncbi_isolation_source: vagina

ncbi_organism_name: Gemelliphila asaccharolytica

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Toho University


ncbi_country: Burkina Faso

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Ulvibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Paenibacillus cisolokensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolate: HETPER

ncbi_organism_name: Candidatus Hoaglandella endobia

ncbi_strain_identifiers: HETPER

ncbi_submitter: UNIVERSITY OF SOUTH BOHEMIA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Hoaglandella;s__Candidatus Hoaglandella endobia


ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Avimonoglobus;s__Candidatus Avimonoglobus intestinipullorum


ncbi_country: Belgium: Menen

ncbi_isolation_source: plant

ncbi_organism_name: Pseudomonas coronafaciens pv. porri

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. porri


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusicatenibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: CpfQ

ncbi_submitter: Daping Hospital, Army Medical University


ncbi_isolation_source: fecal sample

ncbi_submitter: NCSU-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Pandoraea apista

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef fabrication equipment surface

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_isolation_source: lake sediment

ncbi_organism_name: Catalinimonas niigatensis

ncbi_submitter: Xiamen University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Ocean University of China


ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: Russia: Moscow

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: France

ncbi_organism_name: Mesorhizobium mediterraneum

ncbi_strain_identifiers: USDA 3392

ncbi_submitter: Zhengzhou University of Light Industry


ncbi_isolation_source: Caecum

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Japan: Aburatsubo Inlet; Kanagawa Prefecture

ncbi_isolation_source: Surface water (20cm)

ncbi_organism_name: Maribacter sp. 4U21

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Ruminococcus intestinalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Feces

ncbi_submitter: university of tokyo


ncbi_organism_name: Dokdonella fugitiva

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Syntrophaceae bacterium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pelomonas aquatica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: LHW

ncbi_submitter: Enze Hospital


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Streptomyces olivoreticuli

ncbi_submitter: Yunnan Academy of Agricultural Sciences


ncbi_organism_name: uncultured Azospirillum sp.


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:114

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:114


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: PVC group bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10899

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. TH41-1LC

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. TH41-1LC


ncbi_organism_name: Candidatus Fokinia crypta

ncbi_strain_identifiers: US_Bl 11III1

ncbi_submitter: University of Pavia

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Fokinia;s__Candidatus Fokinia crypta


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_submitter: Weifang People's Hospital


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: China: Tibetans

ncbi_isolation_source: feces from diarrhoeal outpatients

ncbi_organism_name: Escherichia coli

ncbi_submitter: beijing


ncbi_country: Svalbard: Midtre Lovenbreen

ncbi_isolation_source: Polar soil

ncbi_organism_name: Pedobacter cryophilus

ncbi_submitter: Kyonggi University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Paraburkholderia bannensis

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Spain: Madrid

ncbi_isolation_source: Lower respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: Tennessee

ncbi_isolation_source: Creek Sediment

ncbi_organism_name: Enterobacter sp. YSU

ncbi_strain_identifiers: YSU

ncbi_submitter: Youngstown State University


ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Belarus

ncbi_isolation_source: potato stems

ncbi_organism_name: Pectobacterium atrosepticum

ncbi_submitter: Belarus State University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Monoglobus merdigallinarum

ncbi_submitter: Quadram Institutte


ncbi_country: Greece: Athens

ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Lactobacillus taiwanensis


ncbi_country: Germany: exploratory Schorfheide-Chorin

ncbi_isolation_source: grassland soil

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Exploratories for large-scale and long-term functional biodiversity research


ncbi_country: China: Hangzhou

ncbi_isolation_source: Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_country: USA: BIFSCo Region 7

ncbi_isolation_source: stool

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CDC 2010K-2159


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; PA

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: China

ncbi_isolation_source: excrement

ncbi_organism_name: Salmonella enterica

ncbi_strain_identifiers: CYX

ncbi_submitter: The Affiliated People Hospital of Jiangsu University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Bradyrhizobium sp. LA2.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Carleton Univeristy


ncbi_country: Netherlands

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: NIZO food research


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Massilioclostridium coli

ncbi_submitter: URMITE


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Chthonomonas sp.


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_organism_name: Phocaeicola vulgatus ATCC 8482

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus;x__Phocaeicola vulgatus ATCC 8482


ncbi_isolation_source: human gut

ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: version 1.0

ncbi_country: France: Mayenne

ncbi_isolation_source: calf with septicemia

ncbi_organism_name: Mycoplasmopsis bovigenitalium 51080

ncbi_submitter: EVOLMYCO


ncbi_country: USA: MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Methylobacterium nigriterrae

ncbi_strain_identifiers: SYSU BS000021

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SRCAMB


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolate: AOP19_H1_surf _bin _12

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP19_H1_surf _bin _12

ncbi_submitter: Genoscope


ncbi_organism_name: Proteus terrae

ncbi_submitter: Washington University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: environmental: river near WWTP effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: CF patient

ncbi_organism_name: Burkholderia seminalis

ncbi_submitter: LM-UGent


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: genital tract swab

ncbi_organism_name: Chlamydia muridarum

ncbi_submitter: IGS


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Mesorhizobium sp. M0579

ncbi_submitter: Washington State University


ncbi_organism_name: Paractinoplanes brasiliensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_organism_name: Streptomyces sp. NPDC058145

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Cameron Currie (currie@bact.wisc.edu)

ncbi_organism_name: Streptomyces sp. SirexAA-E

ncbi_strain_identifiers: SirexAA-E

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_organism_name: Priestia megaterium

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: USA: Toombs Co.; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Nanjing university


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pedobacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Biomin Research Center


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Proteobacteria bacterium UBA4577

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA4577


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_organism_name: Dialister sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas syringae pv. tagetis

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 7;x__Pseudomonas syringae pv. tagetis


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_organism_name: Megasphaera sp.


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: Solibacillus silvestris

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: uncultured Oligoflexia bacterium


ncbi_organism_name: Serratia nevei

ncbi_submitter: Biomedical Research Institute of A Coruna (INIBIC-CHUAC)


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Australia: Newcastle

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: USA: San Joaquin County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Sedimenticola;x__unclassified Sedimenticola;s__Candidatus Sedimenticola sp. (ex Thyasira tokunagai)


ncbi_organism_name: Sphingomonadaceae bacterium


ncbi_organism_name: Borreliella garinii

ncbi_strain_identifiers: PNov

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Tuva

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Amycolatopsis dongchuanensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Halopseudomonas bauzanensis

ncbi_submitter: McGill University


ncbi_country: China

ncbi_isolation_source: tracheal secretion

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Helicobacter fennelliae

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: PS

ncbi_isolation_source: chicken

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: USDA-ARS-USNPRC-RRC


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Crocosphaera sp.

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Pseudomonas caspiana

ncbi_strain_identifiers: WHRI 7043

ncbi_submitter: University of Exeter


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Hafnia sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Ignavibacteria bacterium


ncbi_organism_name: Streptomyces sp. NPDC046909

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Hubei; Suizhou

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_country: France

ncbi_isolation_source: urine sample

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Polynucleobacter necessarius

ncbi_submitter: UNIVERSITY OF BRITISH COLUMBIA, DEPT BOTANY


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Moredun Research Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chr. Hansen A/S