ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Houston; TX

ncbi_genome_representation: full

ncbi_isolation_source: parent strain RU2 evolved under selective conditions; BHI evolved gen 950 Population GS

ncbi_organism_name: Citrobacter freundii

ncbi_strain_identifiers: RU2 BHI21

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_assembly_level: Scaffold

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_assembly_name: freshwater MAG --- Umea2_bin-3181

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: Morocco: Meknes-Tafilalet; Al Ismailia

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


gtdb_representative: t

ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Greece

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Nantahala National Forest; NC

ncbi_isolation_source: campfire topsoil

ncbi_organism_name: Shinella sumterensis

ncbi_submitter: University of Georgia


ncbi_organism_name: Citrobacter koseri


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_country: USA: Henniker; New Hampshire

ncbi_isolation_source: soil surrounding roots of Solanum lycopersicum

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: New England College


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_country: Azerbaijan: Absheron region

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_country: USA: Bay Pomme d or

ncbi_isolation_source: estuarine water

ncbi_organism_name: Flavobacteriaceae bacterium LSUCC0859

ncbi_submitter: University of Southern California


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Microbacterium sp. NPDC080220

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Methylobacter oryzae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Candidatus Micropelagius sp.

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;x__PS1 clade;g__Candidatus Micropelagius;x__unclassified Candidatus Micropelagius;s__Candidatus Micropelagius sp.


ncbi_organism_name: Aequorivita viscosa

ncbi_submitter: Ocean University of China


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lund University


ncbi_assembly_level: Chromosome

ncbi_organism_name: Micromonospora sp. WMMD708

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Marinomonas sp.


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Vienna


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Streptomyces mirabilis


ncbi_organism_name: uncultured Dechloromonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Tardiphaga sp. 619_E2_N8_4

ncbi_submitter: VIB


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Jilin university


ncbi_country: China

ncbi_isolation_source: desert regolith

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_submitter: EMG


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: Jiangnan University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Pollutiaquabacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Candidatus Pollutiaquabacterales;f__Candidatus Pollutiaquabacteraceae;g__Candidatus Pollutiaquabacter;x__unclassified Candidatus Pollutiaquabacter;s__Candidatus Pollutiaquabacter sp.


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Human feces

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: The University of Tokyo


ncbi_country: Mozambique

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_country: Japan

ncbi_organism_name: Cryptosporangium arvum DSM 44712

ncbi_refseq_category: reference genome

ncbi_submitter: JGI

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Colombia: North caribbean; Magdalena

ncbi_isolation_source: Plant

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Universidad de Antioquia


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: marine metagenome


ncbi_organism_name: uncultured Luteolibacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: France: Guebwiller; Alsace

ncbi_organism_name: Borreliella garinii IPT124

ncbi_submitter: Animal Epidemiology Unit - INRA - Saint Genès Champanelle; CNR Borrelia - Pasteur Institute - Paris


ncbi_country: China: Shenzhen

ncbi_organism_name: Roseburia sp. AF02-12

ncbi_submitter: BGI


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 170

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Serratia nevei

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_isolation_source: blood sample taken from a clinical pediatric case of invasive pneumococcal disease

ncbi_organism_name: Streptococcus pneumoniae PNI0197

ncbi_submitter: Washington University


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Beef biltong

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Fudan University


ncbi_organism_name: Chromatiaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_country: Colombia: Bucaramanga

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_organism_name: Burkholderiaceae bacterium


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas gulae

ncbi_submitter: UC Davis


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Emory University School of Medicine


ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA58

ncbi_submitter: Broad Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: FuJian;XiaMen

ncbi_isolation_source: Coastal sediments of Guanyinshan beach; Xiamen

ncbi_organism_name: Thiomicrorhabdus lithotrophica

ncbi_submitter: Third Institute Of Oceanography


ncbi_isolation_source: skin; soft tissue infection


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Cyanobacteria bacterium SIG31

ncbi_submitter: University of California, Santa Barbara

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium SIG31


ncbi_country: USA: Washington

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio parahaemolyticus 3355

ncbi_submitter: NOAA Northwest Fisheries Science Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 3355


ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Mexico

ncbi_submitter: Beijing Institute of Genomics, CAS


ncbi_assembly_name: Rumen uncultured genome RUG11056

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Korea

ncbi_organism_name: Terribacillus sp. DMT04

ncbi_submitter: Dongduk Women's University


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Wadsworth Centre, New York State Department of Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5294

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Guangdong; Shenzhen Coast

ncbi_isolation_source: dinoflagellate

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Graduate School at Shenzhen, Tsinghua University


ncbi_country: Denmark: Odense

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Region Zealand


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: China: Panyu

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Lincoln Woods State Park; Rhode Island

ncbi_isolation_source: soil

ncbi_organism_name: Bdellovibrio sp. KM01

ncbi_submitter: Providence College


ncbi_submitter: Ruzzini Lab


ncbi_organism_name: uncultured Aquabacterium sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__environmental samples;s__uncultured Aquabacterium sp.


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp H-18

ncbi_strain_identifiers: Hp H-18

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Duck

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Canada:Athabasca Oil Sands

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteroidales bacterium UBA2263

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2263


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Thermophilibacter provencensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Poland: Warszawa

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Hafnia paralvei

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Atlanta; GA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Emory University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3104

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Thailand

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Deparment of Primary Industries NSW

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Tunisia: Mediterranean Sea

ncbi_isolation_source: Sea water (coastal)

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Alberta


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong (CityU)


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: UK Health Security Agency


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Pseudarthrobacter sp. 1C304

ncbi_submitter: Ondokuz Mayis University


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Green_S_2

ncbi_organism_name: uncultured Janthinobacterium sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS KAN-5

ncbi_isolation_source: activated sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: SZAS KAN-5

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: bacterium NLAE-zl-H413

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Bacillus sp. AAVF1

ncbi_submitter: Sonora Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AAVF1


ncbi_isolation_source: metagenome

ncbi_organism_name: Enterococcus sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Germany: Experimental Botanical Garden Goettingen

ncbi_isolation_source: compost soil

ncbi_organism_name: Flavobacterium sp. ACN2

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Micromonospora sp. NPDC007208

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Yantai University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Vienna


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: Thailand: Phitsanulok

ncbi_submitter: Cardiff University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agriculture University


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Parma


ncbi_country: China

ncbi_isolation_source: soil

ncbi_strain_identifiers: YIM PH 21723

ncbi_submitter: Yunnan Institute of Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Pseudonocardiales;f__Pseudonocardiaceae;x__unclassified Pseudonocardiaceae;s__Pseudonocardiaceae bacterium YIM PH 21723


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: anammox marine column reactor biofilm on non-woven sheet

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: KAUST


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Carlos Chagas - Fiocruz Parana


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_assembly_name: SFC

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Guatemala

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Ireland

ncbi_isolation_source: Cattle/Soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: Canada: Ontario

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 1/2a;x__Listeria monocytogenes serotype 1/2a str. 10-1321


ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Cognaticolwellia sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Monash University


ncbi_genome_category: derived from single cell

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: Venezuela: Miranda

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira venezuelensis

ncbi_submitter: Venezuelan Scientific Research Institute


ncbi_organism_name: Acinetobacter baumannii AB_TG19617

ncbi_submitter: Translational Genomics Research Institute


ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 41:z4,z23:-


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Bacillus sp. 3G2

ncbi_submitter: Fuzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 3G2


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Changping District; Beijing

ncbi_isolation_source: Ocular surface

ncbi_organism_name: Paracoccus shanxieyensis

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 13

ncbi_submitter: USDA-ARS


ncbi_country: China: the Xinjiang Uygur Autonomous Region

ncbi_organism_name: Gracilibacillus saliphilus

ncbi_submitter: Yunnan institute of microbiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acidimicrobiia bacterium


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Negativibacillus massiliensis

ncbi_submitter: AAFC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;s__Negativibacillus massiliensis


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina: Victoria

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Czech Republic

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Nottingham Trent University, UK


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Sulfuricaulis sp.

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: rumen

ncbi_organism_name: Cyanobacteria bacterium UBA2883

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA2883


ncbi_submitter: Monash University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Southern California


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: river water

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: U.S. Department of Agriculture-Agricultural Research Service


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Proteobacteria bacterium UBA1278

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA1278


ncbi_isolation_source: human gut

ncbi_organism_name: Candidatus Segatella intestinihominis

ncbi_submitter: EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- MJ130605B_bin-085

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Arctic Ocean: Canada Basin

ncbi_isolation_source: deep-sea surface sediment

ncbi_organism_name: Thalassolituus oleivorans 4BN06-13

ncbi_submitter: Third Institute of Oceanography,State Oceanic Administration


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Zhejiang

ncbi_isolation_source: Drainage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Moredun Research Institute


ncbi_country: India: Andhra Pradesh

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium neotropicale

ncbi_submitter: University of Hyderabad


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: Oakland University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. 4_1_36

ncbi_submitter: BGI


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_strain_identifiers: ICMP 4457

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. atropurpurea


ncbi_organism_name: Haemophilus haemolyticus


ncbi_organism_name: Leclercia sp. S52

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acinetobacter sp. V102_4

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_isolation_source: caecum

ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Enterobacter quasihormaechei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Tibet

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Tabrizicola flagellatus

ncbi_strain_identifiers: SYSU G03088

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3190-1

ncbi_submitter: Broad Institute


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: chicken litter

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Brachybacterium muris

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_submitter: Northwestern University


ncbi_organism_name: Candidatus Acutalibacter stercoravium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. SKLX062732

ncbi_submitter: Zhejiang university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Microbacterium sp. Ld4

ncbi_submitter: Station Biologique de Roscoff


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rubrobacter sp.


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_submitter: Universidad del Desarrollo


ncbi_country: Egypt: Cairo

ncbi_isolation_source: Blood culture

ncbi_submitter: October University for Modern Sciences and Arts


ncbi_country: Canada

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Salmonella enterica CVM 43800 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis


ncbi_country: Russia: Moscow

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: anoxic sewage sludge

ncbi_organism_name: Clostridium homopropionicum DSM 5847

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: Canada: Quebec

ncbi_isolation_source: Slaughterhouse-environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Tamazight Cherifi's shared submissions


ncbi_country: USA: Tift Co.; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: USA: MO

ncbi_isolation_source: turkey

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. 24390


ncbi_submitter: Leon University


ncbi_country: France: Marseille

ncbi_isolation_source: Fecal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IHU Mediterranee Infection


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Lysobacter sp.


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Connecticut Graf Lab


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Peru

ncbi_isolation_source: Surgical wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: cBio Corp


ncbi_country: Russia: Altai region; Kulunda Steppe

ncbi_isolation_source: aerobic sediments from hypersaline soda lake

ncbi_organism_name: Cytophagaceae bacterium ABcell3

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Dandelion Kimchi

ncbi_organism_name: Weissella confusa

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: lake water

ncbi_organism_name: Sterolibacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: vagina

ncbi_organism_name: Alistipes sp. Marseille-P5061

ncbi_submitter: URMITE


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: France

ncbi_isolation_source: wheat sourdough

ncbi_organism_name: Levilactobacillus hammesii DSM 16381

ncbi_submitter: Shanghai Majorbio


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China

ncbi_isolation_source: antimony mine

ncbi_organism_name: Stenotrophomonas sp. As-14

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Atopobiaceae bacterium AF16-24AC

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital


ncbi_assembly_name: ThaiXam

ncbi_strain_identifiers: ThaiXam

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. ThaiXam


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: feces

ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_submitter: AAFC


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: BGI


ncbi_organism_name: Ferrimicrobium acidiphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Japan: Osaka

ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: Pseudomonas sp. 1P10UG

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Taizhou Municipal Hospital


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Anavilhanas; AM

ncbi_isolation_source: Apterostigma fungus garden

ncbi_organism_name: Pantoea sp. Cy-639

ncbi_submitter: UW-Madison


ncbi_country: France: Saint Brieuc

ncbi_isolation_source: Expectoration

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: French National Center for Antibiotics Resistance


ncbi_organism_name: Persephonella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Yinchuan

ncbi_isolation_source: soil crust

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: College of Life Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Denmark: Ega

ncbi_isolation_source: activated sludge from Ega_18-Q3-R5-49

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Ireland

ncbi_isolation_source: broiler caeca 6

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Corallococcus interemptor

ncbi_submitter: Shandong University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: University of Zurich


ncbi_organism_name: Salmonella sp. L43

ncbi_submitter: Zhejiang university


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: EMG


ncbi_organism_name: Fidelibacterota bacterium TCS55

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium TCS55


ncbi_organism_name: Escherichia sp. WS2328_2

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Marinobacter adhaerens

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Pyruvatibacter mobilis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Sag32790 bapB knockout

ncbi_submitter: The Eighth Affiliated Hospital of Sun Yat-sen University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Mariniphaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Nunavut; Northern Canada; Alexandra Fiord

ncbi_isolate: AFD bin28

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: AFD bin28

ncbi_submitter: Monash University


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_country: Brazil: Sao Carlos

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: liver

ncbi_organism_name: Acinetobacter variabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Paraburkholderia sp. WSM4179

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus F46798

ncbi_submitter: Broad Institute


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Switzerland

ncbi_isolation_source: poultry

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Brazil: Amazon River

ncbi_isolation_source: water

ncbi_organism_name: Sphingobium sp. UBA5915

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: USA: FL

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Metamycoplasma sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: Roast Meat

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: ACVCF

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: ear

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Veillonella infantium

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: AAFC


ncbi_country: China: Innermogolia

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Streptococcus pyogenes ABC020029793

ncbi_submitter: Broad Institute


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: United Kingdom

ncbi_isolation_source: isolated from contaminated platelets

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Health Canada


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Miami

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: United Kingdom: Gloucestershire

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in a breeding trial plot

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Leibniz Institute for Natural Product Research and Infection Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UC San Diego


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: sputum

ncbi_submitter: Zhuhai People's Hospital


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0411

ncbi_submitter: Texas A&M University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Hong Kong; Shek Wu Hui wastewater treatment plant

ncbi_isolation_source: sludge

ncbi_organism_name: Anaerolineales bacterium UBA2029

ncbi_submitter: University of Queensland


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the sixth affiliated hospital of Shenzhen University Health Science Center


ncbi_country: China: Qingdao

ncbi_submitter: Shandong University


ncbi_country: India: Bellary

ncbi_isolation_source: Large intestine

ncbi_submitter: University of Hyderabad


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Opitutia bacterium UBA3534

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA3534


ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_country: China: Gansu

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Legionellales bacterium

ncbi_submitter: The University of Auckland


ncbi_country: USA: IL; Kaine

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_organism_name: Castellaniella ginsengisoli

ncbi_submitter: The University of Georgia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EBI


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Corynebacterium stationis

ncbi_submitter: Technical University of Denmark


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: UI

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: Canada: Prince Edward Island

ncbi_isolation_source: Imported/domestic retail Mussels

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_country: Germany: Nonnenmattweiher; Black Forest

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Polynucleobacter sp. Nonnen-W13

ncbi_submitter: University of Innsbruck


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: India: Tamilnadu

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alagappa University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: BGI-Shenzhen


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Pelagovum pacificum

ncbi_submitter: Shandong University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Morgantown

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: West Virginia University


ncbi_organism_name: Devosia sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG10649

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Poland

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Treponema sp. UBA1634

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Innoviva Specialty Therapeutics


ncbi_country: China: Tianjin

ncbi_isolation_source: urinary tract

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: Shigella sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Shenzhen

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Nanshan Hospital of Guangdong Medical College, Shenzhen, China


ncbi_organism_name: Bacillus haynesii


ncbi_organism_name: Clostridium sp. AM22-11AC

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: (MIX) marine epipelagic mixed layer

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_isolation_source: Ear swab


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Nakamurella multipartita DSM 44233

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: uncultured Rubrobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Bacillus cereus group sp. BCN157

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN157


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IIT Roorkee


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 16

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: pork sausage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human blood of bacteremia patient

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_taxonomy: d__Bacteria;p__;c__;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Coneutiohabitans;s__Candidatus Coneutiohabitans thermophilus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Coneutiohabitans;s__Candidatus Coneutiohabitans thermophilus


ncbi_organism_name: Streptomyces sp. NPDC059491

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: India: Nellore; Andhra Pradesh

ncbi_isolation_source: Aquaculture

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CABIN


ncbi_country: USA: Stillwater; Oklahoma

ncbi_isolation_source: ACCM-D media

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: Cb NMII RSA 439 passage 61

ncbi_submitter: Oklahoma state university


ncbi_country: Tanzania: MOROGORO

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_assembly_name: Rumen uncultured genome RUG037

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: raw meat-based diets for companion animals

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Hungary: Kiskunsag National Park

ncbi_isolation_source: lake sediment

ncbi_organism_name: Bacillus sp. B15-48

ncbi_submitter: Seqomics Ltd.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. B15-48


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Home

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Dyella sp. EPa41

ncbi_submitter: Tohoku University


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Teesside University


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Shewanella baltica OS625

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Joint Institute for Nuclear Research


ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: Czech Republic

ncbi_isolation_source: puddle

ncbi_organism_name: Laspinema olomoucense D3b

ncbi_submitter: Palacky University in Olomouc


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Saskatchewan

ncbi_organism_name: Escherichia coli O111:NM

ncbi_submitter: US Department of Agriculture


ncbi_country: China: Tibet

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Bacteroides uniformis


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA106

ncbi_submitter: Broad Institute


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Burkholderia cenocepacia H111

ncbi_submitter: University of Zurich


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: Tomato roots

ncbi_organism_name: Enterobacter sp. HK169

ncbi_submitter: Korea Research Institute of Chemical Technology


ncbi_country: USA: MN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_submitter: Carleton Univeristy


ncbi_organism_name: uncultured Pseudohongiella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Montreal


ncbi_country: Nigeria

ncbi_submitter: Cepheid


ncbi_country: USA: PA

ncbi_isolation_source: intestine mouse (Mus musculus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Methyloglobulus sp.

ncbi_submitter: Radboud University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_country: India: Gujarat

ncbi_isolation_source: cattle yard soil

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Zytex Biotech Pvt. Ltd.


ncbi_country: Canada: Axel Heiberg Island

ncbi_isolation_source: Ice-wedge polygon

ncbi_organism_name: Pedococcus bigeumensis

ncbi_submitter: Universite Laval


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China: Daqing

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Streptomyces sp. D2-8

ncbi_submitter: Heilongjiang Bayi Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: Fresh water

ncbi_organism_name: Campylobacter coli

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: bioMerieux


ncbi_country: Belgium

ncbi_organism_name: Aliarcobacter cibarius

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Neptuniibacter sp. PT34_22

ncbi_submitter: Shantou University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Vienna


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Serratia nematodiphila

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Desulfohalobium sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Flavobacterium sp.


ncbi_country: China: Xinjiang

ncbi_isolation_source: soil

ncbi_organism_name: bacterium C1-4

ncbi_submitter: Nanjing Tech University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Psychrobacter sp. ER1

ncbi_submitter: DinsdaleLab Sequences


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_submitter: BioHealthBase

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. novicida;x__Francisella tularensis subsp. novicida FTE


ncbi_organism_name: Kluyvera cryocrescens

ncbi_strain_identifiers: Sil NS 42

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Laboratory

ncbi_strain_identifiers: LT2 KO_STM1799

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: Chlamydia psittaci CP3

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia psittaci;x__Chlamydia psittaci CP3


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UMR 1253, INRA/Agrocampus


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_country: USA: California; Modesto

ncbi_organism_name: Candidatus Giovannonibacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;x__unclassified Candidatus Giovannonibacteria;s__Candidatus Giovannonibacteria bacterium


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from upstream of wastewater treatment plant

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Memorial Sloan Kettering Cancer Center


ncbi_isolation_source: hydrocarbon


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Naval Medical Research Command


ncbi_country: South Korea

ncbi_isolation_source: rhizospheric soil

ncbi_organism_name: Microlunatus elymi

ncbi_submitter: Kyungpook National University


ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. AM42-18AC

ncbi_submitter: BGI


ncbi_country: Poland

ncbi_isolation_source: rectal swab

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- MJ_bin-1175

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Bovine Faeces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Muricomes sp.

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellulomonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: Colon

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: Rumen uncultured genome RUG13692

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Denmark

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Woodland; California

ncbi_isolation_source: Domestic goose; fecal

ncbi_organism_name: Campylobacter sp. RM5004

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)


ncbi_country: Austria: Vienna

ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis

ncbi_submitter: AGES


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Xanthomonas sp. PPL121

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Colombia: Medellin

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Alianza científico - tecnológica Nucleosensor-TB


ncbi_country: China

ncbi_isolation_source: duck cloacal

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: United Kingdom: England

ncbi_isolation_source: control Pig 46 cecum

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: The University of Nottingham


ncbi_country: Italy: Messina harbour

ncbi_isolation_source: water/sediment

ncbi_organism_name: Oleiphilus messinensis

ncbi_submitter: Fidelity Systems


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Brazil: Minas_Gerais_1

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: vagina

ncbi_organism_name: Fannyhessea vaginae DSM 15829

ncbi_submitter: Baylor College of Medecine


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Candidatus Leptovillus affinis

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Leptovillus;s__Candidatus Leptovillus affinis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Leptovillus;s__Candidatus Leptovillus affinis


ncbi_country: Pakistan: Lahore

ncbi_isolation_source: Indwelling device

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AM29-1

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Catenibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Zhengzhou

ncbi_isolation_source: stool

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Israel

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Broad Institute


ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_country: Canada: Winnipeg

ncbi_isolation_source: Lab derived

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Acidaminococcus fermentans


ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0026


ncbi_organism_name: Nocardia abscessus

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli KTE184


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043


ncbi_country: China: Henan

ncbi_submitter: Hunan Normal University


ncbi_submitter: Quadram Institutte


ncbi_organism_name: Candidatus Thiodiazotropha sp. 4PDIVS1

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;x__unclassified Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. 4PDIVS1


ncbi_country: China: South China Sea

ncbi_isolation_source: sea water

ncbi_organism_name: Henriciella mobilis

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Fish hatchery

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3426-1


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Candidatus Limiplasma merdipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma merdipullorum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Nanopelagicus sp.

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;x__unclassified Candidatus Nanopelagicus;s__Candidatus Nanopelagicus sp.


ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Bacillus cereus group sp. BceL093

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL093


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Dyella sp. KULCS107

ncbi_submitter: Kasetsart University


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Kansas State University


ncbi_isolate: blood

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: blood

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Hungateiclostridiaceae bacterium KB18

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Nanchang.

ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium fabae

ncbi_strain_identifiers: CCBAU 33202

ncbi_submitter: North West Agriculture and Forestry University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Actinophytocola sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: ITQB NOVA


ncbi_organism_name: Syntrophobacter fumaroxidans

ncbi_submitter: CLUE-TERRA


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Spain: Asturias

ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Broad Institute


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Mucilaginibacter lappiensis


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_country: USA: FL

ncbi_isolation_source: fecal calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research