ncbi_organism_name: Vibrio chagasii

ncbi_submitter: Tel Aviv University


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_level: Scaffold

ncbi_organism_name: Bacillus salitolerans

ncbi_refseq_category: reference genome

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


gtdb_representative: f

ncbi_organism_name: Candidatus Versatilivorator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Versatilivoradales;f__Candidatus Versatilivoraceae;g__Candidatus Versatilivorator;x__unclassified Candidatus Versatilivorator;s__Candidatus Versatilivorator sp.


ncbi_organism_name: Aerococcus viridans

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: Danvile; IL

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Limnospira sp. PMC 1243.20

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F43676

ncbi_submitter: Broad Institute


ncbi_country: India: Anand

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kamdhenu University


ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: SC


ncbi_country: Argentina: Nahuel Huapia

ncbi_organism_name: Synechococcus sp. 1G10

ncbi_submitter: University of Bristol


ncbi_country: USA: Seattle

ncbi_isolation_source: Airway secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SCH


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Tennessee Veterinary College


ncbi_organism_name: Streptomyces sp. IBSBF 2950

ncbi_strain_identifiers: IBSBF 2950

ncbi_submitter: UFSCar


gtdb_type_species_of_genus: t

ncbi_organism_name: Rapidithrix thailandica

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: uncultured Tannerella sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: ROSLIN


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Oleispira sp.

ncbi_submitter: University of East Anglia


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Australia: Brisbane

ncbi_isolation_source: River

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: leaf of Brassica rapa L. subsp. nipposinica (L.H. Bailey) Hanelt var. linearifolia

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Hiroshima University


ncbi_isolation_source: pig gut metagenome


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Out-of-house environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Ireland

ncbi_isolation_source: Poultry/Soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_isolation_source: sputum and gastric lavage

ncbi_organism_name: Mycolicibacter terrae

ncbi_submitter: University of Trento


ncbi_submitter: the first people's hospital of Yongkang


ncbi_country: USA: MN

ncbi_isolation_source: Environmental Swab

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 400095 22


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium breve


ncbi_isolation_source: marine water

ncbi_organism_name: Hydrogenophilales bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter sp. 1245249

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 1245249


ncbi_organism_name: Corynebacteriaceae bacterium 7-707

ncbi_submitter: Nanjing University


ncbi_country: Australia: Australian Capital Territory

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-393

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Peptoniphilus harei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Throat carriage

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: FL

ncbi_isolation_source: fecal beef calf

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oleispira sp.

ncbi_submitter: EMG


ncbi_isolation_source: stool sample from patient with cholera

ncbi_organism_name: Vibrio cholerae O1 str. 2009V-1131

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. 2009V-1131


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_assembly_name: freshwater MAG --- Loclat_bin-14143


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Poland

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides sp. SL.2.06

ncbi_submitter: University of Chicago


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: shanghai ocean university


ncbi_country: France: Lyon

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CIRI


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp1 AA132

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp1 AA132

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: Panama: Bocas del Toro; Punta Caracol

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Stony Brook University


ncbi_country: USA: Municipal Pensacola Beach; FL

ncbi_isolation_source: beach sand

ncbi_organism_name: Hyphomonadaceae bacterium UBA5341

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Canada: Sarnia oil refinery

ncbi_isolation_source: Carbon granules from GAC filter

ncbi_organism_name: Candidatus Manganitrophus sp.

ncbi_submitter: Western University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Candidatus Troglogloeales;f__Candidatus Manganitrophaceae;g__Candidatus Manganitrophus;x__unclassified Candidatus Manganitrophus;s__Candidatus Manganitrophus sp.


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Oscillibacter sp. CAG:241_62_21


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Halalkalibacterium halodurans

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Neisseria flavescens NRL30031/H210

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_organism_name: Tropheryma whipplei TW08/27

ncbi_submitter: Sanger Institute


ncbi_country: Belize: Carrie Bow Cay Field Station

ncbi_isolation_source: coral mucus

ncbi_organism_name: Cyanobacteria bacterium UBA1583

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA1583


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: University of Amsterdam


ncbi_isolate: SPRUCE 446

ncbi_organism_name: Terriglobales bacterium

ncbi_strain_identifiers: SPRUCE 446

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Laboratorios veterinarios Lasser


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Serratia nematodiphila

ncbi_submitter: McMaster University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UFMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Thermophilibacter provencensis


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Bluepha Co., Ltd.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Sanguibacteroides justesenii

ncbi_submitter: University of California, Berkeley


ncbi_country: Italy: Perugia

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Camerino


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada

ncbi_isolation_source: cheese curds from cheese plant

ncbi_organism_name: Paenibacillus campinasensis

ncbi_submitter: University of Guelph


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Serratia nevei

ncbi_submitter: University of Georgia


ncbi_country: Pacific Ocean

ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-08203

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Onthoplasma faecipullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Christensenellales;f__Christensenellaceae;x__Christensenellaceae incertae sedis;g__Candidatus Onthoplasma;s__Candidatus Onthoplasma faecipullorum


ncbi_country: China: Jiangxi; Yinshan

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France: Tours

ncbi_isolation_source: infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: INRA


ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: Italy

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lachnospiraceae bacterium 10-1


ncbi_country: USA: Iowa

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Vibrio chagasii

ncbi_submitter: University of Gothenburg - CCUG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Roseovarius sp.

ncbi_submitter: EMG


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pantoea agglomerans


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Providencia stuartii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Segatella copri


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium RIFCSPLOWO2_01_FULL_37_9


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Henan province

ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_country: China: Luoyang

ncbi_isolation_source: healthy gingiva

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Henan University of Science and Technology Affiliated First Hospital


ncbi_country: China: Guangxi

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Phytobacter diazotrophicus

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Escherichia coli

ncbi_submitter: Mahidol University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptomyces sp. NPDC013087

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Venezuela: Lara; Arenales

ncbi_isolation_source: soil

ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Instituto de Salud Carlos III


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The University of Queensland


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: VA

ncbi_isolation_source: poultry litter

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas sp. CFBP 8770

ncbi_submitter: INRAE


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Pennsylvania State University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Rhodanobacter sp. Root179

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: China: Nanchang

ncbi_isolation_source: rectal swab from healthy participants

ncbi_submitter: beijing


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: South Africa

ncbi_submitter: University of Pretoria


ncbi_organism_name: Enterobacter sp. MGH 38

ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH 38


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J

ncbi_organism_name: Desulfobulbus propionicus

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Eubacterium sp. CAG:180

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:180


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient8 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_country: Austria: Vienna

ncbi_isolation_source: air tube of royal python

ncbi_organism_name: Solilutibacter pythonis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Candidatus Scatocola faecipullorum


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA47562

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: throat

ncbi_organism_name: Staphylococcus aureus W56243

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: final product

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lentilactobacillus parafarraginis F0439

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_organism_name: Mucinivorans sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: 0.2-1 micron

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Helicobacter pylori SA46A

ncbi_submitter: MHH


ncbi_isolation_source: soil

ncbi_organism_name: Nocardia gamkensis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Brazil: Sao Caetano do Sul

ncbi_isolation_source: Surveillance swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Thailand

ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bariatricus sp. HCP28S3_A7

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bartonella sp. CL70QHWL

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Dyella sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 3884

ncbi_submitter: Ghent University


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: Streptomyces sp. IBSNAI001

ncbi_submitter: Vanderbilt University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Blautia sp.


ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Ethiopia

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Canada: Lacombe

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Oribacterium sp.


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: UIUC


ncbi_organism_name: Alistipes sp.


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA

ncbi_organism_name: Escherichia coli O111:NM str. K6915

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. K6915


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory, Melbourne


ncbi_country: China: Hunan province

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Oman

ncbi_isolation_source: lung

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capripneumoniae


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Peptostreptococcaceae bacterium

ncbi_submitter: University of California, Davis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Emory University


ncbi_assembly_name: IMG-taxon 2740891860 annotated assembly

ncbi_organism_name: Ureibacillus acetophenoni

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: bacterium

ncbi_submitter: University of Michigan


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio tubiashii


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1470 from squamous cell carcinomas patient MST012

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Ohessyouella blattaphilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_assembly_name: Rumen uncultured genome RUG11555

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces


ncbi_organism_name: Clostridium sp. CAG:440

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bifidobacterium polysaccharolyticum

ncbi_submitter: Uppsala university


ncbi_organism_name: Hydrogenovibrio sp.

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Cyclobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: France: Lyon

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_submitter: National Medicines Institute


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Mycobacterium tuberculosis KZN 1435

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis KZN 1435


ncbi_country: Russia: Yessentuki

ncbi_isolation_source: subsurface water

ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: United Kingdom

ncbi_isolation_source: strain LAC grown in TSB

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: LAC

ncbi_submitter: University of Bath


ncbi_isolation_source: Soil

ncbi_submitter: MASSEY UNIVERSITY


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Enterobacteriaceae bacterium UBA4757

ncbi_submitter: University of Queensland


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Clemson University


ncbi_isolation_source: soil

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences


ncbi_country: Sweden

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Menzies School of Health Research


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Citrobacter sp. W9

ncbi_submitter: Shandong University


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: litter

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: LIT13 A36

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: ankle wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pittsburgh


ncbi_country: Germany

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: JCVI


ncbi_country: Peru:Pacasmayo; Guadalupe; Mariscal Castilla

ncbi_organism_name: Yersinia pestis PY-89

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: the seqafrica consortium


ncbi_country: China: Haikou; Hainan province

ncbi_isolation_source: leaf

ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Hainan University


ncbi_country: Malaysia: Putrajaya

ncbi_organism_name: Mycolicibacter terrae

ncbi_submitter: Universiti Putra malaysia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Gar CS 3

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China: Hangzhou

ncbi_isolation_source: pus

ncbi_submitter: China Agriculture University


ncbi_country: Australia: Adelaide Hills; SA

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Czech Republic

ncbi_isolation_source: environmental

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Olsenella absiana

ncbi_submitter: ABS Research Support Center


ncbi_country: China: Guangzhou

ncbi_organism_name: Riemerella anatipestifer RA-GD

ncbi_strain_identifiers: RA-GD

ncbi_submitter: Beijing Institute of Genomics, Chinese Academy of Sciences


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Brucella abortus

ncbi_submitter: Madurai kamaraj university


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: CHU Montpellier


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. F8092B

ncbi_submitter: United State Department of Agriculture

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. F8092B


ncbi_submitter: Hatay Mustafa Kemal University Faculty of Veterinary Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Portugal

ncbi_isolation_source: tertiary treatment wastewater

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidade Catolica Portuguesa


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: USA: Colorado

ncbi_isolation_source: Clinical

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Russia: Saint-Petersburg

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_country: France: Nantes

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: China: Hengxian

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Kosakonia sacchari

ncbi_submitter: Zhejiang University


ncbi_organism_name: Proteus terrae

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_name: denovo assembly

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_isolate: spongia

ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: BGI Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Streptomyces sp. NPDC060210

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Chittagong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__environmental samples;s__uncultured candidatus Brocadiaceae bacterium


ncbi_organism_name: Granulosicoccus sp.


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State University of Londrina


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Lower gallery with a lake; inside a wall diverticulum; 1 m above the cave floor

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_organism_name: uncultured Clavibacter sp.


ncbi_organism_name: Thalassobacter stenotrophicus

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 38:[k]:-


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_organism_name: Ruegeria atlantica

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Rwanda: Huye

ncbi_isolation_source: blood

ncbi_submitter: University of Rwanda

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: feces

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Germany

ncbi_isolation_source: horse dung

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: China

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: intestinal content

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: ChinaCDC


ncbi_country: China: Huibei

ncbi_isolation_source: Pus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Home

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Isoptericola variabilis

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: respiratory tract

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Ghent University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Desulfobulbus oralis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Iran: Lorestan

ncbi_isolation_source: wheat

ncbi_organism_name: Xanthomonas translucens pv. undulosa

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. undulosa


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Mycolicibacterium poriferae

ncbi_submitter: EMG


ncbi_country: China: The East China Sea

ncbi_isolation_source: oxic surface sediment

ncbi_organism_name: Algicola sp.

ncbi_submitter: Ocean University of China


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom

ncbi_isolation_source: feces of a healthy dairy cow

ncbi_organism_name: Aliarcobacter butzleri 7h1h

ncbi_submitter: University of Liverpool


ncbi_country: Spain: Lake La Cruz

ncbi_isolation_source: freshwater

ncbi_organism_name: Cyanobium sp. Cruz-8D1

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: The Ohio State University


ncbi_organism_name: Alteromonas genovensis

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Denmark

ncbi_isolation_source: Faeces

ncbi_organism_name: Enterococcus faecalis EnGen0071

ncbi_submitter: Broad Institute


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: USA: DC

ncbi_isolation_source: Peripheral blood

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Sporomusaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Caecibacter sp. AFF13-5A

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Xiongan

ncbi_isolation_source: lakeside soil

ncbi_organism_name: Actinokineospora xionganensis

ncbi_submitter: Hebei University


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1017


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_isolation_source: Oropharynx

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Haiti: Gressier

ncbi_isolation_source: Water; Environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_organism_name: Alistipes inops

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: TIFN


ncbi_organism_name: Mycoplasmopsis pulmonis

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Stenotrophomonas sp.


ncbi_assembly_name: Rumen uncultured genome RUG10448

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Afghanistan

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_organism_name: Sporichthyaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: Switzerland

ncbi_organism_name: Clostridium sp. CF011

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella sp. NW1207

ncbi_submitter: Sichuan University


ncbi_organism_name: Geobacillus stearothermophilus 10

ncbi_submitter: The University of Oklahoma


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Czech Republic: South Bohemian Region

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Charles University in Prague


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Rudaea sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: EMG


ncbi_country: USA: MA

ncbi_isolation_source: urine sample

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chengdu institute for food and drug control


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3070

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: lake water

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: diabetic wound

ncbi_submitter: MMUST biological


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces bottropensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Tepidanaerobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Fourth Hospital of Hebei Medical University


ncbi_organism_name: Vibrio natriegens

ncbi_submitter: Zhejiang Ocean University


ncbi_country: Italy: Apulia; Bari

ncbi_submitter: University of Bari "Aldo Moro", Bari, Italy


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Fusicatenibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shandong Province

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Smithella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: unknown

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Vibrio sp. B1FLJ16

ncbi_submitter: UMR 1253, INRA/Agrocampus


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Ohio; western Lake Erie

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01977

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_country: USA

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: South Korea: Geomun-do

ncbi_isolation_source: gut

ncbi_organism_name: Pseudoalteromonas tetraodonis

ncbi_submitter: Chonnam National University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Mexico: Mexico city

ncbi_isolation_source: bronchial washing

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Facultad de Medicina, Universidad Nacional Autonoma de Mexico


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Fangchenggang

ncbi_isolation_source: Anal swab

ncbi_submitter: Guangxi Zhuang Autonomous Region Center for Disease Control and Prevention


ncbi_country: USA: Texas

ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: South Africa

ncbi_isolation_source: human

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: USA: UT

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: pig gut metagenome


ncbi_isolation_source: foot rot

ncbi_organism_name: Fusobacterium necrophorum BFTR-1

ncbi_submitter: Newport Laboratories, A Sanofi company


ncbi_organism_name: Leptospira interrogans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-436-K22


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Virginia

ncbi_isolation_source: vaginal swab sample

ncbi_submitter: Virginia Commonwealth University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria genomosp. TM7-H1


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan:Islamabad; Rehman Enclave

ncbi_isolation_source: dough

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: National Agricultural Research Centre (NARC), Islamabad


ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: Ireland: Kilkieran Bay; Galway

ncbi_organism_name: Streptomyces sp. SM8

ncbi_submitter: Environmental Research Institute, University College Cork, Ireland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Obihiro University of Agriculture and Veterinary Medicine


ncbi_country: USA: Maryland

ncbi_isolation_source: Fish tissue

ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: University of Georgia


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Pseudomonas sp. UBA2303

ncbi_submitter: University of Queensland


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: Catheter urine

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Rochester


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Austria

ncbi_isolation_source: corn silage

ncbi_organism_name: Lacticaseibacillus zeae subsp. silagei

ncbi_strain_identifiers: NCIMB 15474

ncbi_submitter: Bielefeld University


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Paenibacillus sp. JJ-223

ncbi_submitter: Institut Pasteur


ncbi_country: USA: Omaha; Nebraska

ncbi_isolation_source: pond water

ncbi_organism_name: Rhodopseudomonas infernalis

ncbi_submitter: Bellevue University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1284800

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_country: Denmark

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_country: Peru

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Propionibacteriaceae bacterium Y1685

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: uncultured Methylophilaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_assembly_name: E coli IVRI_FBI_650

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Kribbella sp. NPDC051620

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Schlesneria sp.

ncbi_submitter: EPFL


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AM5_bin-1294

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Tissues

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__candidate division WOR-1 bacterium RIFOXYD2_FULL_41_8


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Orientia tsutsugamushi

ncbi_submitter: Christian Medical College


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_country: China: Hunan Province

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Xiangya Hospital of Central South University


ncbi_country: China

ncbi_organism_name: Rhodobacteraceae bacterium S2214

ncbi_submitter: Ocean University of China


ncbi_country: China: Guangxi

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Germany

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_isolation_source: Original isolate from Factory - External Area

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Dorea longicatena

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: Universidade Estadual do Norte Fluminense


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Fujian

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Nitrogeniibacter mangrovi

ncbi_submitter: Xiamen University


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. SID5770

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Right guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: USA: Virginia

ncbi_isolation_source: Precipitation

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Virginia Tech


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: CA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Duke University


ncbi_country: New Zealand: Macauley Cone

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Bathyaustriella thionipta


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020044188

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_country: South Korea

ncbi_isolation_source: processed fecal extract provided by a qualified healthy Korean fecal microbiota transplantation donor

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1019

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Greenland: Kangerlussuaq

ncbi_isolation_source: soil sample line 2 60 ft from anomalous acidified pond located near a glacio-fluvial outwash plain

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Indiana University Bloomington


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12052

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India: Bihar; Buxar; Buxar

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Sangeribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Monash University


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: sebeceous gland on nose of healthy male

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalicoccus sp.

ncbi_submitter: EMG


ncbi_country: Antarctica: Ardley Cove; Maxwell Bay; Fildes Peninsula

ncbi_isolation_source: ocular surface sample

ncbi_organism_name: Dermabacteraceae bacterium TAE3-ERU5

ncbi_submitter: Erciyes University


ncbi_isolation_source: fish in the family leiognathidae

ncbi_organism_name: Photobacterium leiognathi

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bradyrhizobium sp. AZCC 1610

ncbi_strain_identifiers: AZCC 1610

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_organism_name: Dysosmobacter sp. Sow4_B12

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0305260.6

ncbi_submitter: IGS


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Treponema sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: China: Guangdong

ncbi_submitter: Guangzhou Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Fokinia solitaria

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Fokinia;s__Candidatus Fokinia solitaria


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: kimchi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: EM

ncbi_submitter: Kyunghee University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Beijing

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Leucobacter alluvii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: feces

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Bacteroidetes bacterium ADurb.Bin174

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium ADurb.Bin174


ncbi_country: Belgium

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: GBBC 3216

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Technische Universiteit Delft


ncbi_organism_name: Clostridioides sp. ES-W-0018-02

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Arizona

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter pittii


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Ghana

ncbi_isolation_source: fish

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Delftia tsuruhatensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_isolation_source: unknown

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridia bacterium UC5.1-1F7

ncbi_submitter: Laboratory of Metagenomics, Graduate School of Frontier Sciences, The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__unclassified Clostridia;s__Clostridia bacterium UC5.1-1F7


ncbi_organism_name: Lactobacillus acidophilus

ncbi_strain_identifiers: LA

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Candidatus Thermochlorobacter sp.

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;f__Candidatus Thermochlorobacteriaceae;g__Candidatus Thermochlorobacter;x__unclassified Candidatus Thermochlorobacter;s__Candidatus Thermochlorobacter sp.


ncbi_organism_name: Hydrocarboniphaga effusa

ncbi_submitter: Xiamen University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Streptomyces sp. NPDC058655

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Serratia nevei

ncbi_submitter: McMaster University


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Aeromonas media

ncbi_submitter: Northumbria University


ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_submitter: Center for Genome Regulation (CRG)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;x__unclassified Candidatus Dormibacteria;s__Candidatus Dormibacteria bacterium


ncbi_isolate: AOP35_05H_surf _bin _7

ncbi_organism_name: Luteimonas sp.

ncbi_strain_identifiers: AOP35_05H_surf _bin _7

ncbi_submitter: Genoscope


ncbi_assembly_name: freshwater MAG --- VK_bin-3395

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriia bacterium

ncbi_submitter: BILS


ncbi_isolation_source: marine water

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: China: Qingdao

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: Spain: Carboneras

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas moraviensis

ncbi_submitter: Universidad San Pablo CEU


ncbi_assembly_name: IMG-taxon 2582580747 annotated assembly

ncbi_organism_name: Devosia limi DSM 17137

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Devosiaceae;g__Devosia;s__Devosia limi;x__Devosia limi DSM 17137


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Actinoplanes lutulentus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Psychrobacillus sp. FSL K6-1267

ncbi_submitter: Penn State


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: feces

ncbi_submitter: USDA


ncbi_country: USA: Minnesota

ncbi_isolation_source: Bronchial wash

ncbi_organism_name: Haemophilus parahaemolyticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: SC


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: Bean seed

ncbi_organism_name: Xanthomonas sp. CFBP 8152

ncbi_strain_identifiers: CFBP 8152


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Muproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatus Muproteobacteria;x__unclassified Candidatus Muproteobacteria;s__Candidatus Muproteobacteria bacterium


ncbi_isolation_source: aquatic

ncbi_organism_name: Rhodobacteraceae bacterium IMCC1923

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_organism_name: Dialister succinatiphilus


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Kandleria vitulina

ncbi_submitter: University of Queensland


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_organism_name: Lacisediminihabitans sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Kuwait

ncbi_submitter: Kuwait University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_isolation_source: microbial mat ULC335

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: ULg


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Columbia University


ncbi_country: China: Beijing

ncbi_organism_name: Campylobacter vicugnae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_organism_name: Helicobacter typhlonius


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Halobacteriovorax sp. GFR7

ncbi_submitter: Georgia Institute of Technology


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EBI


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas parasichuanensis

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_organism_name: uncultured Ruthenibacterium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Chongqing Medical University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA: Downer s Grove; Illinois

ncbi_isolation_source: pond rock

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern