ncbi_organism_name: Candidatus Syntrophosphaera sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;x__unclassified Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: Italy

ncbi_isolation_source: bovine meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Copenhagen


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2009EL2109


ncbi_country: Australia: New South Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


gtdb_representative: t

ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_strain_identifiers: Gazipur 5

ncbi_submitter: University of California, Davis


ncbi_organism_name: Leifsonia sp. NPDC102414

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Milan


ncbi_organism_name: Bermanella sp. R86531

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Salmonella sp. NW166

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Northwestern University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Kenya

ncbi_organism_name: Spirochaetales bacterium UBA4673

ncbi_submitter: University of Queensland


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Portugal

ncbi_isolation_source: cecum

ncbi_submitter: National Institute of Health Doutor Ricardo Jorge


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Memphis; Nebraska

ncbi_organism_name: Bacillus sp. 1751

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 1751


ncbi_organism_name: Lysinibacillus sp.


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Microbacterium testaceum

ncbi_refseq_category: reference genome

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_type_material_designation: assembly from type material


ncbi_country: Mexico: San Luis Potosi

ncbi_organism_name: Microbacterium plantarum

ncbi_submitter: Escuela Nacional de Ciencias Biologicas-IPN


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Streptomyces sp. NPDC088360

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Bacillus safensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: Amazon

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_assembly_name: IMG-taxon 2582581872 annotated assembly

ncbi_organism_name: Hymenobacter daecheongensis DSM 21074

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter;s__Hymenobacter daecheongensis;x__Hymenobacter daecheongensis DSM 21074


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sediment

ncbi_organism_name: Chryseobacterium gambrini

ncbi_submitter: dalian university of technology


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Serbia

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidade Catolica Portuguesa


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: wenzhou medical university


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: huangshi

ncbi_isolation_source: soil

ncbi_organism_name: Pseudarthrobacter sp. Fe7

ncbi_submitter: Huanggang Normal University


ncbi_country: Russia: Perm region

ncbi_isolation_source: stratal water; oilfield

ncbi_organism_name: Rhodococcus rhodochrous

ncbi_strain_identifiers: IEGM 38

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: Ukraine

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: ARRIAM


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 106

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: SNUC 123

ncbi_submitter: University of Calgary


ncbi_country: Russia

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Planctomycetota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: intestine

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Bioprox


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Kitchen D

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Cornell University


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2445

ncbi_submitter: University of Queensland


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: Fermented Fish

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Agro-industry, Prince of Songkla University, wageningen university


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_assembly_name: Rumen uncultured genome RUG10312

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: MI

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Herbicide degradation consortium

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Institute of Agricultural Resource and Regional Planning, CAAS


ncbi_country: USA: Baltimore; MD

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Phocaeicola coprocola


ncbi_country: USA: Nashville; Tennessee

ncbi_isolation_source: Healthy infant urine

ncbi_organism_name: Actinotignum sanguinis

ncbi_submitter: Vanderbilt University Medical Center


ncbi_country: USA: Tennessee

ncbi_isolation_source: RECTAL

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: Cambodia

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Tianmu Mountain; Zhejiang

ncbi_isolation_source: roots

ncbi_organism_name: Paenibacillus kribbensis

ncbi_submitter: Hebei University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. 2006006972


ncbi_country: China

ncbi_isolation_source: pus

ncbi_submitter: Swansea University


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: INRA-MIG


ncbi_organism_name: Brachybacterium paraconglomeratum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Teagasc


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: AAFC


ncbi_country: Italy

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 202

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SNUC 1679

ncbi_submitter: University of Calgary


ncbi_assembly_name: Rumen uncultured genome RUG13938

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pacific Ocean: Millennium Atoll

ncbi_isolation_source: stromatolite

ncbi_organism_name: Leptolyngbya sp. SIO4C1

ncbi_submitter: UCSD


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Pseudomonas coleopterorum

ncbi_submitter: Qujing Normal University


ncbi_assembly_name: freshwater MAG --- Loclat_bin-15002

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Neisseria lactamica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Poland: Baltic Sea

ncbi_isolation_source: bay water

ncbi_organism_name: Nostoc edaphicum CCNP1411

ncbi_submitter: University of Gdansk


ncbi_country: Russia: Novosibirsk Region

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: Irkutsk Antiplague Research Institute of Rospotrebnadzor

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_assembly_name: Rumen uncultured genome RUG13575

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1267820

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_name: freshwater MAG --- Ki1-2-2m_bin-314

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Streptomyces sp. NPDC059631

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Neuroinfections Emerging in the Americas Study


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Oita University


ncbi_organism_name: Litorivicinaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces sp. NPDC047982


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: University of Minnesota


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Spirochaetia bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Zhejiang university


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_country: China: Jilin Province

ncbi_isolation_source: sediment from a soda lake

ncbi_organism_name: Amphibacillus jilinensis Y1

ncbi_submitter: Zhejiang University


ncbi_submitter: Norwegian Defence Research Establishment


ncbi_organism_name: Parabacteroides sp. 20_3

ncbi_submitter: BGI


ncbi_country: United Kingdom: Northern Ireland

ncbi_isolation_source: meat environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Northumbria University


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Deinococcota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-3-2-15-A-TSA1

ncbi_submitter: Arkin Lab


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Paludibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: ICA - AGROSAVIA


ncbi_submitter: Maynooth University


ncbi_organism_name: Brevundimonas diminuta


ncbi_isolation_source: desert environment

ncbi_organism_name: Dongia deserti

ncbi_strain_identifiers: SYSU D60009

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kasetsart University


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium marquesiae

ncbi_submitter: Duke University


ncbi_organism_name: Streptococcus agalactiae GB00955

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China University of Geosciences


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Comenius University Science Park


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: USA: Kansas City; KS

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Broad Institute


ncbi_isolation_source: Feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: academisch medisch centrum


gtdb_type_species_of_genus: t

ncbi_organism_name: Advenella incenata

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada

ncbi_organism_name: Pseudomonas amygdali pv. lachrymans

ncbi_strain_identifiers: ICMP 1448

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. lachrymans


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minnesota


ncbi_country: China: Wuhan

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-344

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-344


ncbi_country: USA: California; Modesto

ncbi_organism_name: Candidatus Microgenomates bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Candidatus Microgenomates;s__Candidatus Microgenomates bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Shanghai Jiao Tong University School of Medicine


ncbi_country: Spain

ncbi_isolation_source: phyllosphere

ncbi_organism_name: Methylorubrum extorquens

ncbi_submitter: UNIST


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Mediterranea sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: India

ncbi_submitter: Christian Medical College


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter negativus

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Desulfosporosinus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: blood sample taken from a clinical pediatric case of invasive pneumococcal disease

ncbi_organism_name: Streptococcus pneumoniae PNI0212

ncbi_submitter: Washington University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Australia: WA; Badgingarra

ncbi_organism_name: Mesorhizobium sp. B2-1-6

ncbi_submitter: Curtin University


ncbi_isolate: LOOXY

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 279

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12116

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: United Kingdom: Lake Windermere

ncbi_organism_name: Synechococcus sp. CCAP 1479/9

ncbi_submitter: University of Bristol


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Empedobacter sp.


ncbi_country: China: Shandong

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. Shandong_3


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Thiomicrorhabdus sp.


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Deinococcus sp.

ncbi_submitter: EPFL


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Cadiz


ncbi_organism_name: Halobacteriovorax sp. RT-2-5

ncbi_submitter: Shandong University at Weihai


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_submitter: Monash University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_submitter: Institute of Marine Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium RIFOXYA2_FULL_43_15


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_level: Chromosome

ncbi_organism_name: Dickeya zeae NCPPB 3531

ncbi_strain_identifiers: NCPPB 3531

ncbi_submitter: James Hutton Institute


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: India: Assam

ncbi_isolation_source: hospital patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Acidovorax sp.

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Bifidobacterium catenulatum


ncbi_organism_name: Yersinia pestis CMCC640047

ncbi_submitter: Beijing Genomics Institute


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21262


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Porphyromonas endodontalis


ncbi_country: Russia: Elista

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russian Research Anti-plague Institute "Microbe"


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Cupriavidus necator

ncbi_submitter: Cultivarium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Turicibacter sanguinis


ncbi_country: USA

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: France: Nantes

ncbi_isolation_source: Bone tissue

ncbi_organism_name: Cutibacterium namnetense

ncbi_submitter: Nantes University Hospital


ncbi_country: Russia: Astrakhan

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Italy

ncbi_isolation_source: Pasta

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UCIBIO/REQUIMTE, Laboratory of Bacteriology, Faculty of Pharmacy, University of Porto


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Pseudomonas taetrolens

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Comenius University Science Park


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: BGI


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Amygdalobacter nucleatus

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: JCVI


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Manitoba


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas parafulva;x__Pseudomonas parafulva NBRC 16636 = DSM 17004


ncbi_country: Switzerland: Berne

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_submitter: Makerere University


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Maine


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Aequorivita sp. UBA5094

ncbi_submitter: University of Queensland


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Pharmacy - U. Porto


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Vreelandella sedimenti

ncbi_submitter: Third Institute of Oceanography,Ministey of Natura


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: marine

ncbi_organism_name: Cryomorphaceae bacterium


ncbi_country: Belgium

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Stenotrophomonas sp.


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: University of Copenhagen


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: USA

ncbi_organism_name: Pseudomonas sp. 25571

ncbi_submitter: UC San Diego


ncbi_country: Uganda

ncbi_organism_name: Lichenihabitans sp. PAMC28606

ncbi_submitter: Korea University


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Enterococcus faecalis EnGen0332

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_country: Japan: Kanzaki

ncbi_isolation_source: paddy soil

ncbi_organism_name: Oryzomonas sagensis

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom: Aberdeen

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolate: NTHi375 delta nagB#8

ncbi_organism_name: Haemophilus influenzae

ncbi_strain_identifiers: NTHi375 delta nagB#8

ncbi_submitter: Mississippi State University


ncbi_organism_name: Microvirga sp.

ncbi_submitter: University of California Berkeley


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_submitter: GNS Science


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_country: USA: Redwood City; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_isolation_source: fecal incubation

ncbi_organism_name: Pilosibacter sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: USA: NY

ncbi_isolation_source: bovine bulk tank milk

ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Norfolk State University


ncbi_country: India: Fort Ranjankudi; Perambalur; Tamil Nadu

ncbi_isolation_source: stone (grandodrite) from temple upper wall damaged area

ncbi_organism_name: Blastococcus sp. PRF04-17

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: ERAMIC ERA TECHNOLOGY JOINT STOCK COMPANY


ncbi_country: USA: Michigan; Powell Township; Upper Pine Lake

ncbi_isolation_source: water

ncbi_organism_name: Aeromonas sp. HMWF017

ncbi_submitter: University of Illinois


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_submitter: Shandong University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Panama: Bocas del Toro; Inner Solarte

ncbi_isolation_source: sponge tissue

ncbi_submitter: Stony Brook University


ncbi_isolation_source: Proximal colon


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Taiwan: Taichung

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China Medical University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil

ncbi_organism_name: Deinococcus actinosclerus

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Caecum


ncbi_country: China: Beijing

ncbi_isolation_source: sheep meat

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lactobacillus iners LEAF 2053A-b

ncbi_strain_identifiers: LEAF 2053A-b

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5434

ncbi_submitter: University of Queensland


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1115

ncbi_submitter: Broad Institute


ncbi_organism_name: Moraxella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;s__Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_FULL_45_35


ncbi_organism_name: Escherichia coli


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Lactobacillus apis

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: Food

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: TIFN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_isolation_source: mouldy hay

ncbi_organism_name: Streptomyces albus

ncbi_submitter: Sigrid Jusélius Foundation


ncbi_country: Colombia: Valle del Cauca

ncbi_isolation_source: marine water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_organism_name: Bordetella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Prauserella salsuginis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_organism_name: Bacillus cereus


ncbi_organism_name: Schaalia hyovaginalis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Germany: North Rhine-Westphalia

ncbi_isolation_source: Rainbow trout

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Planomicrobium okeanokoites

ncbi_submitter: URMITE


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 7

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: EMG


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: Pleural fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: Denmark: Randers

ncbi_isolation_source: activated sludge from Rand_18-Q3-R56-63

ncbi_organism_name: Candidatus Amarobacter glycogenicus

ncbi_submitter: Aalborg University


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Veillonella orientalis

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_country: USA: FL

ncbi_isolation_source: fecal beef calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudoalteromonas sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Russia: South Ural

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Institute for Cellular and Intracellular Symbiosis


ncbi_country: USA: GA

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Anaerocellum danielii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: Brazil

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: State University of Campinas


ncbi_isolation_source: Kefir grains

ncbi_organism_name: Lentilactobacillus kefiri

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA1022


ncbi_country: Germany: surface sediment; lakeshore surface sediment; Lake Constance (Bodensee)

ncbi_isolation_source: lakeshore surface sediment

ncbi_organism_name: Raoultella terrigena

ncbi_submitter: University of Kontanz


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of East Anglia


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: SPRUCE 226

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_strain_identifiers: SPRUCE 226

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Rahnella variigena

ncbi_submitter: Universidad Antonio Narino


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Bacillus paramycoides

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Campylobacter coli

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Brazil: Braganca

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Tissierellaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Mississippi

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: The University of Texas at Dallas


ncbi_country: China: Hubei

ncbi_isolation_source: Rice wine Koji

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: EMG


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Leyella stercorea

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Tokyo university of marine science and technology


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: human stool

ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Dhaka


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Denmark: Viby

ncbi_isolation_source: activated sludge from Viby_18-Q3-R106-67

ncbi_organism_name: Anaeromyxobacter sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Dehalococcoidia bacterium UBA6803

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: China: Shanghai

ncbi_isolation_source: Panthera tigris Amoyensis facel

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_submitter: Makerere University


ncbi_country: USA: WI

ncbi_submitter: NCTR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1869R

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Shenyang

ncbi_organism_name: Enterococcus pernyi

ncbi_strain_identifiers: Shenyang

ncbi_submitter: Shenyang Agriculture University


ncbi_country: Colombia: Antioquia; Bello

ncbi_isolation_source: Tissue

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Antioquia


ncbi_organism_name: Corynebacterium sp. HMSC059E07

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Halocynthiibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient40 sputum

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Kvitko Lab


ncbi_country: Australia

ncbi_isolation_source: beach sands

ncbi_organism_name: Roseibium hamelinense

ncbi_submitter: UPEI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2608642166 annotated assembly

ncbi_organism_name: Streptococcus gallolyticus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Italy: Lucca

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium tuscaniense

ncbi_strain_identifiers: CCUG 51321T

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Lactobacillus iners


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: J.Craig Venter Institute


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: Turkey: Kocaeli

ncbi_isolation_source: water

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency


ncbi_organism_name: Campylobacter ureolyticus


ncbi_organism_name: Xenorhabdus sp. GDc328


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Pseudohalocynthiibacter aestuariivivens

ncbi_submitter: Pukyong National University


ncbi_country: Sri Lanka: Colombo

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-228

ncbi_submitter: JCVI


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Japan

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Bacteriology, Graduate School of Medicine, Gunma University


ncbi_country: Kenya

ncbi_isolation_source: caprine milk; raw milk 24h

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ETH Zurich


ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from dieased colony 1

ncbi_organism_name: Marinifilaceae bacterium

ncbi_submitter: University of Florida


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Burkholderiales bacterium GWA2_64_37

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: freshwater MAG --- Umea1_bin-0444

ncbi_isolation_source: lake water

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: BILS


ncbi_assembly_name: IMG-taxon 2593339256 annotated assembly

ncbi_organism_name: [Clostridium] aminophilum

ncbi_strain_identifiers: F


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Nocardia vermiculata NBRC 100427

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Bolivia: La Paz; Agricultural area Mecapaca

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


ncbi_country: Czech Republic: Stary Liskovec

ncbi_isolate: PSpyc

ncbi_organism_name: Enterobacteriaceae bacterium PC38

ncbi_strain_identifiers: PSpyc

ncbi_submitter: Free University of Bozen-Bolzano


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Enterocloster citroniae

ncbi_submitter: University of Trento


ncbi_assembly_name: Salmonella enterica CVM N42472 v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Ground Turkey

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Heidelberg

ncbi_submitter: FDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8298

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Streptomyces sp. OP7

ncbi_submitter: Microbial Biotechnology lab


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_strain_identifiers: 54v summer

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Defluviicoccus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Dehalococcoidales bacterium


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptosporangium canum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: uncultured Halanaerobiales bacterium


ncbi_submitter: Lund University


ncbi_organism_name: Streptomyces sp. NPDC002602


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: University of Galway

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: Pseudomonas moraviensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Caldimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 226

ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: SNUC 4735

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Larsenimonas suaedae

ncbi_submitter: University of Sevilla, Spain


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Hoylesella buccalis ATCC 35310

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Hoylesella;s__Hoylesella buccalis;x__Hoylesella buccalis ATCC 35310


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Canada: Lacombe

ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: prairie soil

ncbi_organism_name: Neomoorella thermoacetica

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Prevotella intermedia

ncbi_strain_identifiers: KCOM 1101

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: sediment

ncbi_organism_name: Dechloromonas agitata

ncbi_submitter: Hankyong National University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: National Institutes of Health


ncbi_submitter: West African Centre for Cell Biology of Infectious Pathogens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Ireland

ncbi_isolation_source: Floor

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_organism_name: Cellulosimicrobium cellulans

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sp. GD03746

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: IMG-taxon 2597490355 annotated assembly

ncbi_organism_name: Rhodobacter capsulatus

ncbi_strain_identifiers: DSM 938

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Butyricicoccus sp. AM32-19

ncbi_submitter: BGI


ncbi_country: Italy: Bolzano

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_assembly_name: Rumen uncultured genome RUG174

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: metagenome

ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Copenhagen


ncbi_country: Germany

ncbi_isolate: DsparSym

ncbi_isolation_source: Beetle Malpighian tubules

ncbi_organism_name: Enterobacteriaceae endosymbiont of Donacia sparganii

ncbi_strain_identifiers: DsparSym

ncbi_submitter: Johannes Gutenberg University Mainz


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Hungatella sp.


ncbi_isolation_source: Oropharynx

ncbi_organism_name: Mycoplasmopsis columboralis

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG12718

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Aeromonadales bacterium


ncbi_organism_name: Neisseria viridiae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Neptuniibacter sp. QD29_5

ncbi_submitter: Shantou University


ncbi_organism_name: Borreliella burgdorferi 297

ncbi_submitter: Laval university


ncbi_country: USA: BIFSCo Region 5

ncbi_isolation_source: ground beef

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum;x__Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1676


ncbi_organism_name: Candidatus Legionella polyplacis

ncbi_submitter: Faculty of Science, University of South Bohemia


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: Denmark

ncbi_isolation_source: abscess

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_organism_name: uncultured Vampirovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: lungs

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Mahidol University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Single-cell amplified genomes of a freshwater lake

ncbi_organism_name: Sphingopyxis sp. BSN-002

ncbi_submitter: Kyoto University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Calgary

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0837

ncbi_submitter: Broad Institute


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine


ncbi_country: Russia: Samara

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Costa Rica

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: China: Liaoning province

ncbi_organism_name: Pseudomonadaceae bacterium T75

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Williamsoniiplasma lucivorax ATCC 49196

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of California Davis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Lloydiibacteriota;s__Candidatus Lloydbacteria bacterium RIFCSPHIGHO2_01_FULL_54_11


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: GuangXI vocational and technical college


ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Brevibacillus sp. 179-C9.2 HS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: National Study Centre for Sequencing in Risk Assessment


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_organism_name: Gardnerella leopoldii

ncbi_submitter: Drexel University College of Medicine


ncbi_isolation_source: fermentation

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Semmelweis University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Singapore Food Agency


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_country: China: Shandong Province

ncbi_isolation_source: water

ncbi_organism_name: Halomonas hydrothermalis

ncbi_submitter: Shandong university


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Denmark: Viby

ncbi_isolation_source: activated sludge from Viby_18-Q3-R106-67

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Redwood City; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pasteuria penetrans

ncbi_submitter: The James Hutton Institute


ncbi_country: China: Sichuan

ncbi_isolation_source: aquatic product

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Candidatus Fraserbacteria bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fraseribacteriota;x__unclassified Candidatus Fraserbacteria;s__Candidatus Fraserbacteria bacterium


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Alistipes sp.


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_strain_identifiers: FDAARGOS 1443

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Imperial College London

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: cold seep

ncbi_organism_name: Thioploca sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Klebsiella sp. CB_Kp197

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_assembly_name: freshwater MAG --- AM-2014-D3_bin-367

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_organism_name: Marinovum algicola

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: SC


ncbi_country: India

ncbi_organism_name: Xanthomonas citri pv. sesbaniae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. sesbaniae

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: China: Jiangmen City; Guangdong Province

ncbi_isolation_source: aquaculture water

ncbi_organism_name: Pseudomonas sp. JM0905a

ncbi_submitter: Guangdong institute of microbiology


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Graduate School of Environmental and Life Sciences, Okayama University


ncbi_country: China

ncbi_isolation_source: soil from chicken farm

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_country: Pakistan

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Aurantimonas sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Lactobacillus delbrueckii


ncbi_organism_name: Streptomyces sp. NPDC056085

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Colombia

ncbi_isolation_source: Gastrointestinal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ohio


ncbi_organism_name: Streptomyces sp. OspMP-M45

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- Ja1-D5_bin-794

ncbi_organism_name: uncultured Oscillochloris sp.

ncbi_submitter: BILS


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_country: Mayotte

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira borgpetersenii;x__Leptospira borgpetersenii serovar Mini;x__Leptospira borgpetersenii serovar Mini str. 201000851


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: the seqafrica consortium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Candidatus Bathyarchaeia archaeon

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Archaea;x__Thermoproteati;p__Candidatus Bathyarchaeota;c__Candidatus Bathyarchaeia;x__unclassified Candidatus Bathyarchaeia;s__Candidatus Bathyarchaeia archaeon


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: India: Hyderabad

ncbi_isolation_source: fermented food

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Unique Biotech Limited


ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: India: Vellore

ncbi_isolation_source: Pus

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: CHRISTIAN MEDICAL COLLEGE ,VELLORE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Amycolatopsis sp. NPDC052450

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetales bacterium

ncbi_submitter: Spribille Lab


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: India: Navi Mumbai

ncbi_isolation_source: algae culture media

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Reliance Industries Limited


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Italy: Rome

ncbi_submitter: University of Otago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae ICMP 18744


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: China Conservation and Research Center for the Giant Panda


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: United Kingdom

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: China: Henan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC