ncbi_country: Thailand: Ubon; Kemarach

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: South Korea:Seoul

ncbi_genome_representation: full

ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: Seoul National University


ncbi_assembly_level: Contig

ncbi_country: China: Anhui; Wuhu

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: CFBP 8405

ncbi_submitter: University of Amsterdam


gtdb_representative: t

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: University of East Anglia


ncbi_isolate: AOP1_A1_surf _bin _19

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP1_A1_surf _bin _19

ncbi_submitter: Genoscope


ncbi_organism_name: Stenotrophomonas sp. CASM101

ncbi_submitter: Lebanese American university


ncbi_organism_name: uncultured Thermoactinomyces sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Kyungpook National University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0315

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Trichodesmium sp. jk18x7bins.61

ncbi_submitter: Stony Brook University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Simplicispira sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: China: Beijing

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agriculture University


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Janibacter melonis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Vibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Nepal: Bansgadi

ncbi_isolation_source: mud dauber nest

ncbi_organism_name: Nonomuraea sp. C10

ncbi_submitter: University of Tuebingen


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: United Kingdom

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: United Kingdom Health Security Agency


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: South Korea: Jeju island

ncbi_organism_name: Shewanella algicola

ncbi_submitter: Karolinska Institutet

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_organism_name: Actinoplanes sp. NBRC 103695

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Canada: Montreal

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Saskatchewan


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sp. GD03766

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: University of Bern


ncbi_country: Sweden

ncbi_isolation_source: bovine milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodothermaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Calditrichaceae bacterium

ncbi_submitter: Shanghai Ocean University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia: Moscow

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: Nasophaynx


ncbi_assembly_name: Rumen uncultured genome RUG14834

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Atlantic Ocean

ncbi_isolation_source: hand picked Trichodesmium colonies from marine 130 um planktonic net tow

ncbi_organism_name: Trichodesmium sp. St2_bin6

ncbi_submitter: University of Southern California


ncbi_organism_name: Sulfitobacter litoralis

ncbi_submitter: EMG


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Konstanz


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_country: India: Sikkim

ncbi_isolation_source: fermented food

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: Curd

ncbi_submitter: CSIR-CFTRI Mysore


ncbi_organism_name: Kitasatospora saccharophila

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Zhejiang

ncbi_isolation_source: glyphosate polluted soil

ncbi_organism_name: Enterobacter sp. E20

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Streptomyces malaysiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: PA

ncbi_isolation_source: porcine pig intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Bacillus sp. FSL R9-9497

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R9-9497


ncbi_assembly_name: IMG-taxon 2636416191 annotated assembly

ncbi_organism_name: Pseudomonas gessardii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: USA: KY

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Pseudomonas luteola

ncbi_submitter: US Food and Drug Administration


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: UNIVERSITY OF PENNSYLVANIA


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-DS3

ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Germany

ncbi_organism_name: Borreliella garinii

ncbi_strain_identifiers: TWA

ncbi_submitter: INRAe


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_country: USA: New Haven; CT

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Allobaculum mucilyticum

ncbi_submitter: Yale University


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Nannocystis exedens

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: RCPCM


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolate: Pectobacterium versatile A385-S18-F17

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium versatile

ncbi_strain_identifiers: Pectobacterium versatile A385-S18-F17

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: Rice paddy soil

ncbi_organism_name: Zoogloea oryzae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_39_11


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Wenzhou-Kean University


ncbi_isolation_source: marine water

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: California

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnospiraceae bacterium C1.1

ncbi_submitter: University of California, Davis


ncbi_country: USA: Houston

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_organism_name: Enterococcus aquimarinus


ncbi_organism_name: Pseudoglutamicibacter albus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3233-1

ncbi_submitter: Broad Institute


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: EMG


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Brachybacterium tyrofermentans

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: AOP32_A1_surf _bin _23

ncbi_organism_name: Brevibacterium sp.

ncbi_strain_identifiers: AOP32_A1_surf _bin _23

ncbi_submitter: Genoscope


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Hawaii Institute of Marine Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: rat gut

ncbi_organism_name: Clostridiales bacterium UBA7175

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella sp. s51090

ncbi_submitter: Zhejiang university


ncbi_organism_name: Isosphaeraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Wyoming

ncbi_isolation_source: retail meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Staphylococcus saccharolyticus

ncbi_submitter: Aarhus University


ncbi_country: China:Hubei; Wuhan

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: South Korea

ncbi_isolation_source: stool

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Hallym University


ncbi_country: New Zealand

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Clostridium luticellarii

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom: Staffordshire

ncbi_organism_name: Pseudomonas gessardii

ncbi_submitter: NIAB East Malling Research


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: RIMG, Kochi University


ncbi_country: Canada: Halifax

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_country: Pacific Ocean

ncbi_isolation_source: water from Mariana Trench

ncbi_organism_name: Alcanivorax jadensis

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Polaribacter atrinae

ncbi_submitter: Cong Sun Research Group


gtdb_type_species_of_genus: t

ncbi_submitter: Okinawa Institute of Advanced Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas aeruginosa group;s__Pseudomonas aeruginosa;x__Pseudomonas aeruginosa DSM 50071 = NBRC 12689


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mesorhizobium sp. CCNWLW179-1

ncbi_submitter: Northwest A&F University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Germany: Neuharlingersiel

ncbi_isolation_source: crustacean shell

ncbi_organism_name: Fuerstiella marisgermanici

ncbi_submitter: Leibniz-Institute DSMZ German Collection of Microorganisms and Cell Cultures


ncbi_country: France: Aix en Provence

ncbi_organism_name: Enterococcus faecium EnGen0161

ncbi_submitter: Broad Institute


ncbi_country: Spain

ncbi_isolation_source: Medical

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Investigacion Sanitaria y Biomedica de Alicante


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS, Western Regional Research Center


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Maribacter sp.


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China: Zhejiang

ncbi_isolation_source: urine

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hungary: Soltszentimre

ncbi_isolation_source: soda pan (no. 60); water

ncbi_organism_name: Belliella alkalica

ncbi_submitter: Centre for Ecological Research, Institute of Aquatic Ecology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhengzhou University


ncbi_country: Uganda: Kasese

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_isolation_source: groundwater

ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: South Korea: Gangjin Bay

ncbi_isolation_source: tidal mudflat [ENVO:00000241]

ncbi_organism_name: Pontixanthobacter gangjinensis

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: USA: New York City

ncbi_submitter: Medini Annavajhala's shared submissions


ncbi_submitter: nankai university


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: water treatment plant

ncbi_organism_name: Cupriavidus sp. WS

ncbi_strain_identifiers: WS

ncbi_submitter: College of Life Science, Zhejiang University,


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: University Hospital Muenster


ncbi_country: China: Anhui

ncbi_submitter: University of Science and Technology of China


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Mesocricetibacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_organism_name: Paenibacillus sp. WLX2291

ncbi_submitter: Shenzhen Center for Disease Control and Prevention


ncbi_country: China: Guangzhou

ncbi_isolation_source: pharyngeal swab

ncbi_submitter: Southern Medical University


ncbi_organism_name: uncultured Hoeflea sp.

ncbi_submitter: EMG


ncbi_organism_name: Corallococcus macrosporus

ncbi_submitter: University of Mississippi


ncbi_country: Brazil: Tatui

ncbi_isolation_source: Cecum and rectal contents from Capybaras

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Brazilian Center for Research in Energy and Materials (CNPEM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Yunnan

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri Shi06AH028

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_strain_identifiers: Xcv DC 97 P3A

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Ruminococcus] torques


ncbi_country: USA:Mettler; Kern County; CA

ncbi_organism_name: Spiroplasma citri

ncbi_submitter: USDA, ARS


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Rumen uncultured genome RUG12980

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidad de las Americas


ncbi_country: Switzerland: Bern

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Applied Sciences of Western Switzerland hepia


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA

ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: JSS Academy of Higher Education & Research


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_country: USA: Utah

ncbi_isolation_source: deer mouse or kangaroo rat

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: Dugway 7D77-80

ncbi_submitter: National Institutes of Health


ncbi_organism_name: Candidatus Fermentibacter danicus

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: NJ

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Jiahui International Hospital


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Anaerostipes hadrus


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Sphingopyxis sp.


ncbi_organism_name: Bacillus mobilis


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Kazan Federal University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. YS-B37

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Candidatus Enteromonas sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Alloenteromonas;x__unclassified Candidatus Enteromonas;s__Candidatus Enteromonas sp.


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Muenster University Hospital


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: marine

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_country: China

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Shandong Provincial Hospital Affiliated to Shandong University


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: uncultured Bacillaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptomyces sp. TRM 70361

ncbi_submitter: Tarim University


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Xenococcus sp. MO_188.B8

ncbi_submitter: Scripps Institution of Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Pleurocapsales;f__Xenococcaceae;g__Xenococcus;x__unclassified Xenococcus (in: cyanobacteria);s__Xenococcus sp. MO_188.B8


ncbi_submitter: Shandong University


ncbi_isolate: Clinical

ncbi_isolation_source: Human

ncbi_strain_identifiers: Clinical

ncbi_submitter: instituto nacional de salud del peru

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: Institute of Applied Ecology, Chinese Academy of Sciences


ncbi_organism_name: Thermodesulfobacteriota bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Sandaracinaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_submitter: Institute for Infectious Diseases


ncbi_assembly_name: Rumen uncultured genome RUG13299

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Kenya: African Rift Valley

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Roseinatronobacter;s__Roseinatronobacter bogoriensis;sb__Roseinatronobacter bogoriensis subsp. bogoriensis;x__Roseinatronobacter bogoriensis DSM 18756


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan

ncbi_isolation_source: middle urine

ncbi_submitter: Toho university


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas sp. S1941

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Anaeromyxobacter sp. Fw109-5

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Netherlands

ncbi_isolation_source: Secondary rapid sand filter

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Radboud University


ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus MRSN 8613

ncbi_strain_identifiers: MRSN 8613

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Japan: Tokyo

ncbi_isolation_source: soil

ncbi_organism_name: Azospirillum sp. TSA6c

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Australia: Newcastle

ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: University of Queensland


ncbi_organism_name: Micromonospora purpureochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: the seqafrica consortium


ncbi_country: South Korea

ncbi_isolation_source: volcanic ash

ncbi_organism_name: Nocardioides rubriscoriae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Germany: Donaustauf

ncbi_isolation_source: urine [UBERON:0001088]

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Pus swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P44P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Dokdonia pacifica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: other

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces


ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas agarici

ncbi_submitter: Wageningen University & Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Yunnan

ncbi_isolation_source: root

ncbi_organism_name: Clostridium sp. YIM B02555

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;x__unclassified Clostridium;s__Clostridium sp. YIM B02555


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA: Colorado

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus atrophaeus

ncbi_strain_identifiers: NRRL NRS 213

ncbi_submitter: NCAUR-ARS-USDA


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_country: Austria: Creek Hainbach at Strasswalchen

ncbi_isolation_source: creek; freshwater

ncbi_organism_name: Polynucleobacter sp. 78F-HAINBA

ncbi_submitter: University of Innsbruck


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Abditibacteriaceae bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Candidatus Chromulinivoraceae bacterium

ncbi_taxonomy: d__Bacteria;p__;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Chromulinivoraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Chromulinivoraceae;x__unclassified Candidatus Chromulinivoraceae;s__Candidatus Chromulinivoraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: seawater

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Ocean university of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Desulfovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium sardiniense

ncbi_strain_identifiers: DSM 599

ncbi_submitter: Brigham and Women's Hospital

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Ferrovum myxofaciens

ncbi_submitter: Institute of Molecular Genetics of the ASCR v.v.i.


ncbi_isolate: metabat2_pooled_metaflye.40 MAG

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_strain_identifiers: metabat2_pooled_metaflye.40 MAG

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_submitter: Lund University


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-DS1

ncbi_organism_name: Ralstonia sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacillales bacterium UBA1078

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pneumoniae OXC141

ncbi_submitter: The Wellcome Trust Sanger Institute


ncbi_isolation_source: human skin

ncbi_organism_name: Anaerococcus nagyae

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Priestia megaterium

ncbi_submitter: INRAE


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Colwellbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;x__unclassified Candidatus Colwellbacteria;s__Candidatus Colwellbacteria bacterium


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Synechococcus sp. R5-12

ncbi_submitter: University of Montana


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Calgary


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 3849A

ncbi_submitter: University of Warwick


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The British University in Egypt


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China-Japan Friendship Hospital, Beijing, China.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Human saliva

ncbi_organism_name: Prevotellaceae bacterium UBA1746


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Freshwater sediment

ncbi_organism_name: bacterium

ncbi_submitter: Aarhus University


ncbi_country: Switzerland

ncbi_isolation_source: carcasses

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: human gut

ncbi_organism_name: Dorea longicatena


ncbi_submitter: Federal Ministry of Agriculture & Rural Development


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico

ncbi_organism_name: Weissella tructae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_organism_name: Oleiphilaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Brazil: Braganca

ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_organism_name: Sarcina ventriculi

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Christensenella sp.

ncbi_submitter: University of Iowa


ncbi_country: China: Beijing

ncbi_isolation_source: bile

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: feces

ncbi_organism_name: Palleniella intestinalis

ncbi_strain_identifiers: PINT

ncbi_submitter: Helmholtz Centre for Infection Research - HZI


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Palmer LTER


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_assembly_name: Salmonella enterica CVM 43789 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Acinetobacter baumannii 44437_8

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Madagascar

ncbi_organism_name: Klebsiella sp. 02-911

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: Canada: Ontario

ncbi_isolation_source: Chicken feces

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_country: Denmark

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: CAU


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Rickettsia massiliae str. AZT80

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia massiliae;x__Rickettsia massiliae str. AZT80


ncbi_submitter: Nanyang Technological University


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_country: Australia: Victoria

ncbi_isolation_source: blood

ncbi_submitter: The University of Queensland


ncbi_organism_name: Blautia hansenii

ncbi_submitter: Washington University in Saint Louis


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: EMG


ncbi_organism_name: Serratia grimesii

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_country: China: Lengshuijiang; Hunan

ncbi_isolation_source: tailing mud from antimony mine

ncbi_organism_name: Stenotrophomonas lactitubi

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: University of Waterloo


ncbi_assembly_name: IMG-taxon 2636416082 annotated assembly

ncbi_organism_name: Geodermatophilus poikilotrophus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Keratinibaculum paraultunense

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Midwest

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Aeromonas bestiarum


ncbi_country: Pakistan

ncbi_isolation_source: Water canal sediments

ncbi_organism_name: Streptomyces sp. R1

ncbi_submitter: NIBGE


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Thailand

ncbi_isolation_source: Human clinical

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: PHLS 112

ncbi_submitter: Los Alamos National Laboratory


ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Aggregatibacter segnis


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: Col 50-PUJ

ncbi_submitter: Pontificia Universidad Javeriana


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: stool

ncbi_submitter: CDC


ncbi_country: Italy: Campania

ncbi_organism_name: Brucella abortus

ncbi_submitter: IZSM


ncbi_organism_name: Enterococcus dispar


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Cand. Hepatoplasma crinochetorum Ps

ncbi_genome_representation: partial

ncbi_organism_name: Candidatus Hepatoplasma crinochetorum

ncbi_strain_identifiers: Ps

ncbi_submitter: Division of Microbial Ecology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. CK182

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Ontario

ncbi_isolation_source: manure from farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Escherichia coli STEC_DG131-3

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Guangdong

ncbi_isolation_source: chicken

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Streptomyces sp. Tue 6430

ncbi_submitter: University of Tuebingen


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium sp. NLR16b

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Indonesia

ncbi_isolation_source: leaf

ncbi_organism_name: Paractinoplanes bogorensis

ncbi_submitter: Chulalongkorn University


ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Chlamydia muridarum

ncbi_submitter: UTHSCSA


ncbi_country: Switzerland

ncbi_isolation_source: skin

ncbi_organism_name: Macrococcoides canis

ncbi_submitter: University of Bern


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Zoogloeaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: ZX

ncbi_submitter: Tsinghua University


ncbi_isolation_source: cat oral swab

ncbi_organism_name: Capnocytophaga felis

ncbi_submitter: National Institute of Infectious Diseases


ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Huintestinicola sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Streptomyces afghaniensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus equinus

ncbi_submitter: Xinjiang agricultural university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Psychrobacillus sp. NPDC093200


ncbi_organism_name: Streptomyces sp. NPDC060000


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Streptomyces sp. NBC_00986

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Thermoleophilaceae bacterium


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Roseomonas sp.


ncbi_submitter: Quadram Institutte


ncbi_organism_name: Cyanobacteria bacterium J06649_5

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06649_5


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: EMG


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG10235

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Mozambique

ncbi_organism_name: Mycolicibacter sinensis

ncbi_submitter: JCVI


ncbi_country: Honduras

ncbi_organism_name: Francisella orientalis

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Loyalsock; Pennsylvania

ncbi_isolation_source: freshwater creek water

ncbi_organism_name: Flavobacterium sp. LC2016-23

ncbi_submitter: Lycoming College


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: University of Miyazaki


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: bovine stool

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Faeces


ncbi_organism_name: Alloalcanivorax marinus

ncbi_submitter: Tang lab


ncbi_organism_name: bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_isolation_source: Hospital Universitario Son de Espases (Palma de Mallorca)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_organism_name: Oxalicibacterium faecigallinarum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Hydrogenophilales bacterium 32-62-9


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: Halopseudomonas oceani

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_isolation_source: Colon


ncbi_organism_name: Clostridioides difficile F152

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Tennessee

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas sp. GM74

ncbi_submitter: Oak Ridge National Lab


ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter sp. ENT02

ncbi_submitter: University of Chicago


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA5088

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Thermoflexus sp.

ncbi_submitter: University Duisburg-Essen


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_assembly_name: freshwater MAG --- Loc090721-4m_bin-0602

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Silvanigrella sp.

ncbi_submitter: BILS


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Parabacteroides sp. D26

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Streptomyces sp. ISL-1

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_isolation_source: skin from ulcerative lesion of bovine foot infected with digital dermatitis

ncbi_organism_name: Treponema brennaborense DSM 12168

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Idaho


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: J.Craig Venter Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2588254255 annotated assembly

ncbi_organism_name: Chryseobacterium sp. YR221

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Chulalongkorn University


ncbi_country: USA: Massachusetts; West Falmouth/Sippewissett

ncbi_isolation_source: salt marsh

ncbi_organism_name: Rhabdochromatium marinum

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Monash University Malaysia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_assembly_name: freshwater MAG --- Ja2_bin-1396

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Panama: Isla Solarte

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: University of California, Davis


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Germany

ncbi_submitter: Robert Koch Institute


ncbi_country: China

ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: large intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: BGI


ncbi_isolate: Urine

ncbi_strain_identifiers: STp 32;STw 127;NILS79:B2;O6:H31;Urine

ncbi_submitter: UMR 1137 IAME


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Ireland

ncbi_submitter: University College Dublin


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1440

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: Iran: Zanjan

ncbi_isolation_source: Wheat rhizosphere

ncbi_organism_name: Pseudomonas sp. SWRI77

ncbi_submitter: KU Leuven


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Colombia: Guasca

ncbi_organism_name: Streptomyces sp. JH010

ncbi_submitter: Universidad de los Andes


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Lachnospirales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Labrys sp. (in: a-proteobacteria)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Xanthobacteraceae;g__Labrys;x__unclassified Labrys (in: a-proteobacteria);s__Labrys sp. (in: a-proteobacteria)


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacillaceae bacterium TLI11

ncbi_submitter: NJAU


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Walter Reed Army Medical Center

ncbi_isolation_source: Severe Trauma Site

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Miami University


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: Philippines

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: University of the Philippines Diliman


ncbi_country: India

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: acinetobacter baumannii isolate  strainL

ncbi_isolation_source: tracheal secretion

ncbi_strain_identifiers: L

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: HG

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA3618

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the seqafrica consortium


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Helicobacter bilis ATCC 51630

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolation_source: Ileo-caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Hong Kong: Pokfulam

ncbi_isolation_source: Garden soil

ncbi_organism_name: Pseudomonas tohonis

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: USA: PA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Neptunomonas sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: Sao Paulo State (Brazil) Xanthomonas Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. aurantifolii;x__Xanthomonas citri pv. aurantifolii str. ICPB 10535


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Hydrogenophaga taeniospiralis CCUG 15921

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_isolate: metabat2_pooled_hifiasm.129_sub MAG

ncbi_strain_identifiers: metabat2_pooled_hifiasm.129_sub MAG

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_country: China: Fujian

ncbi_isolation_source: Epinephelus coioiaes

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Jimei University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Chicago


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Brucella pseudogrignonensis

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Somalia

ncbi_isolation_source: camelid milk; fermented garoor/suusac

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ETH Zurich


ncbi_organism_name: Mesotoga sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Tianjin

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Third Affiliated Hospital of Zhengzhou University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_assembly_name: Salmonella enterica CVM N50426 v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Chicken Legs

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Komagataeibacter swingsii

ncbi_strain_identifiers: LMG 25

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Nasopharyngeal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_assembly_name: Rumen uncultured genome RUG14882

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Alberta


ncbi_country: Thailand:Phetchaburi Province

ncbi_isolation_source: sediments

ncbi_organism_name: Bacillus sp. FW1

ncbi_submitter: Department of Engineering, Graduate School of Integrated Science and Technology, Shizuoka University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FW1


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Germany

ncbi_isolation_source: cellar wall

ncbi_organism_name: Ornithinimicrobium murale

ncbi_submitter: Sun Yat-sen University


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-G22


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: water

ncbi_submitter: University of Siena

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;sb__Mycobacterium intracellulare subsp. chimaera


ncbi_country: Italy: Ancona

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universita Politecnica delle Marche


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: China: Sichuan

ncbi_isolation_source: Anal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Purity-IQ Inc.


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_isolation_source: soil

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Candidatus Avelusimicrobium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Desulfurella sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. CQ24WZ0598SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Holdemanella biformis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Medical City


ncbi_organism_name: Oceanobacter antarcticus

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources, P.R.China


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Slackia isoflavoniconvertens


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Janthinobacterium sp. PSPC2-1

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: CEITEC VETUNI


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 755829

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: cold seep

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Massachusetts

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0434R

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: digestive tract of healthy swine

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: Beijing University of Agriculture


ncbi_country: India

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C1214_90

ncbi_submitter: University of Maryland School of Medicine


ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: China: Hangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus F43212


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Vidalia Region; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Pakistan: Peshawar

ncbi_isolation_source: Nasobronchial lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umea University


ncbi_isolation_source: garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12208

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_country: Pakistan

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas sp. GD03856

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Norway: Bergen

ncbi_isolation_source: biopsy

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: HuNBiome


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_country: United Kingdom: Sheffield

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Masaryk University


ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Australia

ncbi_submitter: US FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 4b;x__Listeria monocytogenes serotype 4bV str. LS643