ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_submitter: Centre for Microbiome Research


gtdb_representative: f

ncbi_assembly_level: Complete Genome

ncbi_country: South Korea: Hapcheon-gun

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Bergeyella sp.

ncbi_submitter: EMG


ncbi_assembly_level: Scaffold

ncbi_country: United Kingdom:England

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA: California

ncbi_isolation_source: Cow; fecal

ncbi_organism_name: Campylobacter sputorum subsp. bovis

ncbi_submitter: USDA, ARS, WRRC

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Gardnerella leopoldii

ncbi_submitter: Loyola University Chicago


ncbi_country: Ecuador: El Empalme

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Guayaquil


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Candidatus Scatovivens sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Scatovivens;x__unclassified Candidatus Scatovivens;s__Candidatus Scatovivens sp.


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Bacillus sp. FSL L8-0533

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL L8-0533


ncbi_country: Mexico

ncbi_isolation_source: Wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: uncultured Ktedonobacterales bacterium


ncbi_organism_name: Coprobacillaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Portugal

ncbi_isolation_source: clinical isolate

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: ditch water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Enterobacter hormaechei subsp. oharae

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. oharae


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: UCC isolate

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolate: Serratia sp. Tan611

ncbi_isolation_source: activated sludge

ncbi_organism_name: Serratia sp. Tan611

ncbi_strain_identifiers: Serratia sp. Tan611

ncbi_submitter: GMGM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. Tan611


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: China: Urumqi

ncbi_isolation_source: urine

ncbi_submitter: University College London (UCL)


ncbi_country: France: Saint Crepin; Durance River

ncbi_isolation_source: fresh water from alpine river

ncbi_organism_name: Pectobacterium peruviense

ncbi_submitter: Sorbonne University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Hoylesella pleuritidis F0068

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Colombia

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: Belm de So Francisco; PE

ncbi_isolation_source: bulbs

ncbi_organism_name: Burkholderia semiarida

ncbi_submitter: Universidade Federal Rural de Pernambuco


ncbi_country: USA

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Nisaea sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Bacillus sp. FSL K6-3312

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-3312


ncbi_assembly_level: Chromosome

ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Pseudomonas sp. SL4(2022)

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: Chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: freshwater MAG --- Umea3p1_bin-0659

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_country: Japan:Miyagi; Onikobe

ncbi_isolation_source: sediment

ncbi_organism_name: Thermodesulfomicrobium sp. WS

ncbi_strain_identifiers: WS

ncbi_submitter: Department of Biological Sciences, Tokyo Metropolitan University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France: Nantes

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Portugal: Matosinhos

ncbi_isolation_source: Intraabdominal infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. AFS054943

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS054943


ncbi_isolate: AOP7_C1_surf _bin _24

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP7_C1_surf _bin _24

ncbi_submitter: Genoscope


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. DT199

ncbi_submitter: University of Liege


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Psychroserpens sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-26

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Planctomycetota bacterium

ncbi_strain_identifiers: new MAG-26

ncbi_submitter: Micoorganism


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Melbourne


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Azospira sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: SCOPE


ncbi_country: Switzerland

ncbi_isolation_source: Poultry meat

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides sp. AF18-52

ncbi_submitter: BGI


ncbi_country: Canada: Lacombe

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Agrobacterium radiobacter

ncbi_strain_identifiers: SEMIA 4026

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Mixta calida


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104

ncbi_submitter: SC


ncbi_country: China: Zejiang

ncbi_organism_name: Pseudomonas amygdali pv. myricae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. myricae


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: milk tofu

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Shanghai ocean university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Slackia piriformis


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Candidatus Delongbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Delongiibacteriota;x__unclassified Candidatus Delongbacteria;s__Candidatus Delongbacteria bacterium


ncbi_country: South Africa

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Malaysia

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Robertkochia solimangrovi

ncbi_refseq_category: reference genome

ncbi_submitter: FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: The First Hospital of Jilin University


ncbi_country: China: Yunnan

ncbi_isolation_source: lake water

ncbi_organism_name: Chryseobacterium lacus

ncbi_submitter: Shandong University at Weihai


ncbi_country: Bulgaria

ncbi_isolation_source: feces

ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: East China University of Science and Technology


ncbi_country: India: Rohtak; Haryana

ncbi_organism_name: Oceanobacillus caeni

ncbi_submitter: Maharshi Dayanand University


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA4727


ncbi_isolation_source: endotracheal tube (ETT) or tracheostomy tube

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Alistipes communis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Brevundimonas sp. Leaf280

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Nepal: Bansgadi

ncbi_isolation_source: Mud Dauber Wasp Nest

ncbi_organism_name: Pseudonocardia sp. C8

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Leuconostoc mesenteroides subsp. cremoris

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: USA: Texas

ncbi_isolation_source: eye

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Galchi-Kimchi

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Dongduk Women's University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institue


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium RIFCSPLOWO2_01_FULL_52_12


ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerobutyricum hallii


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Serratia fonticola

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: marine

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Marivivens sp.

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bifidobacterium coryneforme

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Minnesota


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Kurthia massiliensis

ncbi_submitter: laboratoire URMITE CNRS 6236


ncbi_organism_name: Klebsiella sp. 90739

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus SJOS6098

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_country: USA: Fayetteville AR

ncbi_isolation_source: Grower Feed

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Pittsburg State University


ncbi_country: USA: Lake Alfred; Florida

ncbi_organism_name: Wolbachia endosymbiont of Diaphorina citri

ncbi_submitter: University of Florida


ncbi_country: United Kingdom

ncbi_isolation_source: Sauerkraut

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_submitter: JCVI


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae


ncbi_submitter: Instituto Nacional de Salud


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: India

ncbi_organism_name: Sphingorhabdus contaminans

ncbi_submitter: Inha University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Lachnobacterium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: SAR202 cluster bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_organism_name: Vibrio sp. V23_P3S9T160

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_assembly_name: Unknown Bacterium AM_0876

ncbi_organism_name: bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Alistipes inops

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Cryobacterium sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Galway


ncbi_organism_name: Segatella copri


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Mississippi Medical Center


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Streptomyces erythrochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: sheep gut metagenome


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium CG_4_10_14_0_2_um_filter_Dojkabacteria_WS6_41_15


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Actinotignum sanguinis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Acinetobacter soli

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_country: China:ShangHai Zoo

ncbi_isolation_source: Ailuropoda melanoleuca

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Streptomyces sp. NPDC046988


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Gemmiger formicilis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: CDC of Sichuan Province


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Universidade Federal Vicosa


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: bacterium


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Taiwan University Hospital


ncbi_country: Czech Republic

ncbi_isolation_source: spleen

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Holdemanella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Dorea longicatena


ncbi_isolation_source: environmental

ncbi_organism_name: Microbacterium rhizomatis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: China: Tibetan Plateau

ncbi_organism_name: Schnuerera sp. xch1

ncbi_submitter: Shanghai Jiaotong University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: Auburn University


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Prevotella sp.


ncbi_country: Russia: Moscow

ncbi_isolation_source: digestive system

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SRCAMB


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou university


ncbi_country: Taiwan: Taichung

ncbi_isolation_source: surface-sterilized vetiver roots

ncbi_organism_name: Burkholderia seminalis

ncbi_submitter: National Chung Hsing University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Myroides injenensis M09-0166

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Negativibacillus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__unclassified Negativibacillus;s__Negativibacillus sp.


ncbi_organism_name: Caenibius fulvus

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Antonio Narino University


ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: Feral swine feces


ncbi_country: Italy: Val Venosta; South Tyrol

ncbi_isolation_source: organic apple juice

ncbi_organism_name: Komagataeibacter rhaeticus

ncbi_submitter: Faculty of Natural Sciences and Mathematics


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Edaphobacter paludis

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Greece

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Pantoea sp. AN62

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Sweden

ncbi_organism_name: Ligilactobacillus saerimneri DSM 16049


ncbi_country: Japan

ncbi_submitter: Toho university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: dropping

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter felis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Mycoplasma sp. CAG:956

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Pittsburgh; Pennsylvania Magee Womens Hospital

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Corynebacterium kroppenstedtii


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus casseliflavus


ncbi_isolation_source: Mammary gland lymph node

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Holophagales bacterium UBA5066

ncbi_submitter: University of Queensland


ncbi_isolation_source: glacier

ncbi_organism_name: Flavobacterium sp. LS1P28

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Thermogutta sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: blood

ncbi_organism_name: Brucella abortus CNGB 1432

ncbi_strain_identifiers: CNGB 1432

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus CNGB 1432


ncbi_organism_name: Deinococcota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Brevibacillus sp. NPDC058079

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Chromatiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Valafar_Erdman 1.0

ncbi_strain_identifiers: Erdman

ncbi_submitter: Valafar Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis str. Erdman = ATCC 35801


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Devosia sp.


ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: USDA-ARS


ncbi_submitter: University of KwaZulu-Natal


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Lower gallery with a lake; inside a wall diverticulum; 1 m above the cave floor

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_organism_name: Chitinophaga hostae

ncbi_submitter: EMG


ncbi_submitter: Colorado State University


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_organism_name: Christensenellales bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Canada: Toronto

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Parma


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Australia: WA; Western Desert paddock 30-6

ncbi_organism_name: Mesorhizobium sp. WSM4962

ncbi_submitter: Murdoch University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chloroflexales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangzhou

ncbi_isolation_source: selected with meropenem showing different genome comparing to wild type (37662WT)

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FDA/CDC


ncbi_organism_name: Pseudomonas sp. CCC4.4

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: Ewha Womans University Mokdong Hospital


ncbi_country: USA

ncbi_isolation_source: endotracheal aspirate

ncbi_organism_name: Providencia stuartii

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_organism_name: Paracoccus homiensis

ncbi_strain_identifiers: HT-F

ncbi_submitter: Ocean University of China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Georgenia sunbinii

ncbi_submitter: National Institute for Communicable Disease Control and Prevention,China CDC


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_assembly_name: freshwater MAG --- Loc081215-1m_bin-1287

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_country: Brazil: Bahia

ncbi_isolation_source: Biofilm from a PVC pipe found in the sewage

ncbi_organism_name: Leptospira levettii

ncbi_submitter: Federal University of Bahia


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Sichuan University


ncbi_country: USA: MI

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Burkholderia multivorans


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudoalteromonas sp.


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Pus

ncbi_organism_name: Enterococcus faecium EnGen0031

ncbi_submitter: Broad Institute


ncbi_country: USA: FL

ncbi_isolation_source: cilantro

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: USA: OR

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: Oregon State University


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio mediterranei

ncbi_submitter: NSW Department of Primary Industries


ncbi_country: USA: Florida

ncbi_organism_name: Bacteroides pyogenes

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8272

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Erasmus MC University Medical Center Rotterdam


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: New Hampshire; Town of Hanover; Hanover Country Club golf course

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. LB(2018)

ncbi_submitter: Colby Sawyer College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. LB(2018)


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: USDA-ARS


ncbi_country: Ethiopia: Wollo

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Germany

ncbi_isolation_source: feces from healthy individual

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Salinibacterium sp.

ncbi_submitter: EPFL


ncbi_isolation_source: marine

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 4DZ1-17B1


ncbi_country: USA

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Russia: Cherkessk

ncbi_isolation_source: feces of healthy female (18 years old; female)

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Russia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Segatella copri


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: France: Valenciennes

ncbi_isolation_source: urine

ncbi_submitter: CHU de Rennes


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Aga Khan University Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: China

ncbi_organism_name: Lysobacter silvisoli

ncbi_submitter: Guangdong institute of Microbiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Egibacteraceae bacterium


ncbi_country: Canada: Chicoutimi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Moraxella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Jiangsu

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Yangzhou University


ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EBI


ncbi_country: France

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_strain_identifiers: CNCM I 4542

ncbi_submitter: Federal University of Minas Gerais


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Zymomonas mobilis

ncbi_submitter: Teagasc


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dyadobacter sp. 22481

ncbi_submitter: Yantai University


ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Rostov State Medical University


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Paracoccus sp. SJTW-4

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. SJTW-4


ncbi_organism_name: Brevibacterium epidermidis

ncbi_submitter: EMG


ncbi_organism_name: Jeongeupia wiesaeckerbachi

ncbi_submitter: Technical University Munich


ncbi_organism_name: Enterococcus sp. DIV0087

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: water

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Zhejiang university


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: South Korea

ncbi_organism_name: Limnohabitans lacus

ncbi_submitter: Dongguk University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Exilibacterium sp.

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: Rumen uncultured genome RUG13691

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Flavobacteriales bacterium


ncbi_organism_name: Hafnia sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolate: Clostridium perfringens

ncbi_isolation_source: human faecal sample

ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: Clostridium perfringens;Q135.2

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Brazil: Cama#ari

ncbi_strain_identifiers: Fiocruz LV2763

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2763


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Clostridiales bacterium VE202-09

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Bacillus sp. T9C1

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. T9C1


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Australia: Queenland

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Murdoch University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Australia: Carnarvon

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium australiense

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. DvalAA-21

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: India: Madhya Pradesh; Sehore; Mographool

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: Brazil: Ribeirao Preto; Sao Paulo State

ncbi_isolation_source: Kambusha tea

ncbi_organism_name: Komagataeibacter rhaeticus AF1

ncbi_submitter: Laboratorio Nacional de Ciencia e Tecnologia do Bioetanol


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Marinobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_isolation_source: Faeces


ncbi_assembly_name: Rumen uncultured genome RUG14724

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Thailand: Nan

ncbi_isolation_source: Wond Swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Italy: Pisa

ncbi_isolation_source: liquor

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Novartis Vaccines


gtdb_type_species_of_genus: t

ncbi_organism_name: Saccharomonospora viridis DSM 43017

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacterium coprostanoligenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: USA: International Space Station

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: SurvCARE


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human skin

ncbi_organism_name: Corynebacterium ureicelerivorans

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Changhai Hospital Affiliated to Naval Military Medical University


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail fresh basil

ncbi_submitter: USDA


ncbi_country: France

ncbi_isolation_source: baby blood culture

ncbi_submitter: UMR9198, Universite Paris Saclay

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: Brazil: Minas Gerais State

ncbi_isolation_source: anal swab

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Oswaldo Cruz Foundation (Fiocruz)


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Burkholderia contaminans

ncbi_strain_identifiers: CAMPA 187

ncbi_submitter: Universidad Nacional de La Plata


ncbi_organism_name: Syntrophothermus sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: University of Washington


ncbi_country: India: Assam

ncbi_isolation_source: hospital patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: France: Arcueil

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: United Kingdom: Scotland; Paisley

ncbi_isolation_source: Milk bottle rinse

ncbi_organism_name: Chryseobacterium lactis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: USA: Chicago

ncbi_isolation_source: BAL

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: USA: Arizona

ncbi_isolation_source: trach asp

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Merdiplasma;s__Candidatus Merdiplasma excrementigallinarum


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Kaiserslautern


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Zurich


ncbi_country: Saudi Arabia:Riyadh

ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_country: South Africa

ncbi_organism_name: Campylobacter curvus

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: China: Tenchong area; Yunnan province

ncbi_isolation_source: spring

ncbi_organism_name: Acidithiobacillus caldus

ncbi_submitter: Shandong University


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas gingivicanis

ncbi_submitter: UC Davis


ncbi_country: USA: MO

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Tenacibaculum sp. Ill

ncbi_strain_identifiers: Ill

ncbi_submitter: Princeton University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chirstian Medical College


ncbi_country: USA: Carson; CA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured Actinomycetota bacterium


ncbi_organism_name: Acetobacter orientalis

ncbi_submitter: Teagasc


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Marinilactibacillus psychrotolerans

ncbi_submitter: Agroscope


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Sweden: Gullmar Fjord

ncbi_isolation_source: hypoxic fjord sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Kiel University


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;s__Candidatus Nealsonbacteria bacterium RIFCSPLOWO2_01_FULL_38_120


ncbi_country: USA: CA

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Broad Institute


ncbi_assembly_name: IMG-taxon 2690316366 annotated assembly

ncbi_organism_name: Bradyrhizobium erythrophlei

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_isolation_source: missisng

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_isolation_source: Japan Trench; Off Sanriku

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Isorropodon fossajaponicum symbiont;x__Isorropodon fossajaponicum endosymbiont JTNG4


ncbi_organism_name: Moryella indoligenes

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_isolation_source: chicken

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghaishinongyekexueyuan


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Shewanella putrefaciens

ncbi_strain_identifiers: YZ-J

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_isolation_source: lake water

ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University


ncbi_country: USA: California; The Cedars highly alkaline spring

ncbi_organism_name: Anaerobacillus sp. CMMVII

ncbi_strain_identifiers: CMMVII

ncbi_submitter: Tokyo Institute of Technology


ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium flavum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: University of California at Davis


ncbi_organism_name: Ktedonobacterales bacterium


ncbi_country: USA: MD

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Bifidobacterium crudilactis

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis;x__Enterococcus faecalis ATCC 19433 = NBRC 100480


ncbi_submitter: The University of Melbourne


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Granulicella sp. UBA5172

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China: Jilin

ncbi_organism_name: Lactobacillus sp. W8092

ncbi_submitter: China Agricultural University


ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: South Korea:Daejeon

ncbi_organism_name: Lactobacillus iners

ncbi_strain_identifiers: KY

ncbi_submitter: Seoul National Univerisity


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bangladesh: Dhaka

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Cardiff University


ncbi_isolation_source: pig joint

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: University of Missouri - Columbia


ncbi_isolate: mbra

ncbi_organism_name: Methylobacterium brachiatum

ncbi_strain_identifiers: mbra

ncbi_submitter: Radboud University Nijmegen


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Canada: near Kenora; Ontario; Lake 227; IISD-Experimental Lakes Area

ncbi_isolation_source: Ca. Chloroheliales L227-5C initial enrichment culture; a non-axenic enrichment culture of water from the upper anoxic zone (5 m depth) of a Boreal Shield lake

ncbi_organism_name: Rhodoplanes sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_submitter: University of California, Berkeley


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Yancheng City; Jiangsu Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Crocinitomix sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 170 (4-3026949)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 170 (4-3026949)


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Texas; Corpus Christi

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: Czech Republic

ncbi_isolation_source: soil

ncbi_organism_name: Beijerinckia sp. L45

ncbi_submitter: Institute of Microbiology of the AS CR


ncbi_country: India

ncbi_organism_name: Tsukamurella tyrosinosolvens

ncbi_submitter: SRM Institute of Science and Technology


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. I-M35

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_isolation_source: food

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Korea

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Yonsei University


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Brown University


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium 10-1


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Pacific Ocean: Shioyasaki offshore

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudoalteromonas shioyasakiensis

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: USA

ncbi_isolation_source: groin

ncbi_submitter: NIH Intramural Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae KPNIH1


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Nocardioides sp. Leaf285

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Jiangxi; Dexing

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonas qingdaonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Capnocytophaga stomatis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_organism_name: Micromonospora tulbaghiae


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas sp. GLN_6

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Paenarthrobacter sp. NPDC091711


ncbi_organism_name: Stenotrophomonas indicatrix

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Christmas Island: Pink House Research Station

ncbi_isolate: PHRS 0518

ncbi_isolation_source: disease lesion from mucosa and submucosa of the maxilla

ncbi_organism_name: Enterococcus lacertideformus

ncbi_strain_identifiers: PHRS 0518

ncbi_submitter: University of Sydney


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled soil sample collected from floor of poultry farm

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: soil from vegetable field

ncbi_organism_name: Actinomycetospora lutea

ncbi_strain_identifiers: TBRC 2215

ncbi_submitter: KASETSART UNIVERSITY


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium GW2011_GWA2_39_41


ncbi_country: Kenya

ncbi_organism_name: Treponema sp. UBA4678

ncbi_submitter: University of Queensland


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Lund University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Leclercia sp. UBA2479


ncbi_isolation_source: secretion

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: China: Jiangsu

ncbi_isolation_source: Intestinal tract

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou university


ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_organism_name: bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: Human Stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: metagenome

ncbi_organism_name: Bavariicoccus seileri


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Campylobacter majalis

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: Spain: Bilbao

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium persicum

ncbi_submitter: Forschungszentrum Borstel, Germany


ncbi_isolation_source: Submandibular lymph node abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_isolation_source: trachea

ncbi_organism_name: Acinetobacter baumannii UH12208

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: oral swab

ncbi_organism_name: Shigella flexneri

ncbi_submitter: King's College London


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus plantarum;sb__Lactiplantibacillus plantarum subsp. plantarum;x__Lactiplantibacillus plantarum subsp. plantarum ATCC 14917 = JCM 1149 = CGMCC 1.2437


ncbi_isolation_source: pasteurized milk

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cornell University


ncbi_country: USA: San Diego

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: San Diego State University


ncbi_organism_name: Afifella sp. YEN Y35

ncbi_strain_identifiers: YEN Y35

ncbi_submitter: Institute of Biotechnology, Vietnam Academy of Science and Technology (VAST), Hanoi, Vietnam


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: China: Sichuan Province; Liangshan Prefecture; Yanyuan County

ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium sp. S152

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: New York City

ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium bovis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: India

ncbi_isolation_source: rhizosphere soil of crown gall infected cherry rootstock-Colt

ncbi_strain_identifiers: Cherry 2E-2-2

ncbi_submitter: University of Delhi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Agrobacterium;x__Agrobacterium tumefaciens complex;s__Agrobacterium tumefaciens;x__Agrobacterium tumefaciens str. Cherry 2E-2-2


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Adlercreutzia sp.


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Unversidad Michoacana de San Nicolas de Hidalgo


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: NanJing University


ncbi_assembly_name: freshwater MAG --- AM_bin-1365

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kiambu


ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Eggerthella sp. CAG:209

ncbi_submitter: DTU


ncbi_country: Germany: Bavaria

ncbi_isolation_source: high oxygen packaged beef steak (+ 3 CD; spoiled)

ncbi_organism_name: Dellaglioa algida

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Dehalococcoidia bacterium UBA1332

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Rubripirellula amarantea

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Holdemania filiformis


ncbi_organism_name: Klebsiella sp. OBRC7

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Brazil

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_strain_identifiers: NCPPB 1833

ncbi_submitter: Wageningen University & Research

ncbi_type_material_designation: assembly from pathotype material


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Treponema sp.

ncbi_submitter: Quadram Institute BioScience


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: Ireland: Cork

ncbi_isolation_source: sourdough

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Cork Institute of Technology


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_assembly_name: Rumen uncultured genome RUG14926

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Nonlabens sp.

ncbi_submitter: marine college, shandong university


ncbi_submitter: EMG


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Escherichia coli BL21(DE3)

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Poland

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium CG11_big_fil_rev_8_21_14_0_20_42_18


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Florida; Ocala Nationa Forest; Wildcat Lake

ncbi_isolation_source: sediment

ncbi_organism_name: Chromobacterium sp. IIBBL 290-4

ncbi_strain_identifiers: IIBBL 290-4

ncbi_submitter: USDA-ARS


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_organism_name: Actinobacteria bacterium UBA3086

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium UBA3086


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Cellvibrio sp.

ncbi_submitter: Quanzhou Normal University


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_isolation_source: soil metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Candidatus Spyradenecus sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Lentisphaerales;f__Lentisphaeraceae;x__Lentisphaeraceae incertae sedis;g__Candidatus Spyradenecus;x__unclassified Candidatus Spyradenecus;s__Candidatus Spyradenecus sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven