ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. FJAT-44742

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-44742


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Escherichia coli JJ1886

ncbi_submitter: Statens Serum Institut


ncbi_assembly_level: Contig

ncbi_organism_name: Sphingomonas sp. 22R3R2A-7

ncbi_submitter: University of Copenhagen


gtdb_representative: t

ncbi_country: China: Fujian

ncbi_isolation_source: paddy soil

ncbi_organism_name: Geomonas oryzisoli

ncbi_refseq_category: reference genome

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Streptomyces nigra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Rhizobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NBC_00138

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptomyces coeruleorubidus


ncbi_organism_name: Candidatus Flemingiibacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Flemingiibacterium;x__unclassified Candidatus Flemingiibacterium;s__Candidatus Flemingiibacterium sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Ornithinimicrobium sp. LYQ121

ncbi_submitter: China CDC


ncbi_organism_name: Salmonella sp. NW140

ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Chryseobacterium kwangjuense

ncbi_submitter: Lomonosov Moscow State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Staphylococcus saprophyticus


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-6511

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: China: Beijing

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; pilot scale (60m3) reactor for the removal of ammonium from the effluent from a primary clarifier of a full-scale WWTP.

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Queensland


ncbi_country: South Korea: Seoul

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: EFA 24

ncbi_submitter: Yonsei Medical Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides gallinaceum

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Australia: Brisbane

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Gulf of Mexico

ncbi_isolation_source: continental shelf sea water microbial communities

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: activated sludge

ncbi_organism_name: Leucobacter weissii

ncbi_submitter: Sichuan university


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: USA: Texas

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_genome_category: derived from single cell

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus pseudoxylosus


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: maybe soil

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: Switzerland:Ticino; Piora Valley

ncbi_isolation_source: chemocline water sample

ncbi_organism_name: Chromatium okenii

ncbi_strain_identifiers: LaCa

ncbi_submitter: University of Geneva


ncbi_organism_name: Candidatus Methylopumilus sp.

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Cloacimonetes bacterium UBA4999

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Cloacimonetes bacterium UBA4999


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW460-LB5

ncbi_submitter: Arkin Lab


ncbi_country: USA:Marine Street; California

ncbi_isolation_source: kelp tisue

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Flinders Institute


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: Throat

ncbi_submitter: SC


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: USA

ncbi_isolation_source: ileum

ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: University of Minnesota


ncbi_country: Greece

ncbi_isolate: Sea bass

ncbi_organism_name: Vibrio anguillarum

ncbi_strain_identifiers: Sea bass;VIB12

ncbi_submitter: UiT The Arctic University of Norway


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Marinobacter alkaliphilus

ncbi_submitter: Ocean University of China


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pediococcus pentosaceus IE-3

ncbi_submitter: Institute of Microbial Technology (CSIR)


ncbi_organism_name: Planomonospora sphaerica

ncbi_submitter: Utsunomiya University, Center for Bioscience Research and Education


ncbi_organism_name: Salmonella sp. SKLX087901

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Haemophilus sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_organism_name: Enterococcus sp. AZ048

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_country: USA: San Francisco; CA

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Texas A&M University


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Agro-industry, Prince of Songkla University, wageningen university


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis OFXR-18


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Wuxi

ncbi_isolation_source: fecal sample

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: Southwest University


ncbi_country: China: Shanghai

ncbi_isolation_source: nasal swab

ncbi_organism_name: Enterobacter hormaechei


ncbi_assembly_level: Chromosome

ncbi_organism_name: Microbacterium sp. LWH10-1.2

ncbi_submitter: Interfaculty Research Collaboration â€œOne Healthâ€ of the University of Bern


ncbi_organism_name: Vulcanimicrobiaceae bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: National Research Center "Kurchatov Institute"


ncbi_country: Tunisia: Sousse

ncbi_isolation_source: urine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: XP

ncbi_submitter: Jiangsu Academy of Agricultural Sciences


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Environment

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G.Caporale"


ncbi_country: United Kingdom

ncbi_organism_name: Chromobacterium subtsugae

ncbi_submitter: University of Malaya


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Zymo Research Corporation


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-676-O21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Angelakisella sp.


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: the surface of the Mars Odyssey spacecraft

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Lysinibacillus;s__Lysinibacillus odysseyi;x__Lysinibacillus odysseyi 34hs-1 = NBRC 100172


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Parasaccharibacter apium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Stenotrophomonas sp.


ncbi_country: China: Guangdong

ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_strain_identifiers: GDCZ

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Lachnospiraceae bacterium 10-1


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS LIN-5

ncbi_isolation_source: activated sludge

ncbi_organism_name: Cyanobacteria bacterium SZAS LIN-5

ncbi_strain_identifiers: SZAS LIN-5

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium SZAS LIN-5


ncbi_isolation_source: pork

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Nanjing university


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Parafilimonas sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 296


ncbi_assembly_name: SalmonellaEntericaRissenRrStrain

ncbi_strain_identifiers: RR

ncbi_submitter: UNIVERSITY OF NAPLES FEDERICO II

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rissen


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_organism_name: Polaribacter sp. BACL8 MAG-120531-bin13

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter;x__unclassified Polaribacter;s__Polaribacter sp. BACL8 MAG-120531-bin13


ncbi_isolation_source: assoc. with Toninia coeruleonigricans

ncbi_organism_name: Streptomyces sp. NRRL F-6491

ncbi_strain_identifiers: NRRL F-6491


ncbi_organism_name: Streptomyces sp. NPDC055082

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolate: GDMZFS

ncbi_organism_name: Candidatus Profftella armatura

ncbi_strain_identifiers: GDMZFS

ncbi_submitter: School of Life Sciences and Food Engineering

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Betaproteobacteria;o__;f__;g__Candidatus Profftella;s__Candidatus Profftella armatura

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Profftella;s__Candidatus Profftella armatura


ncbi_organism_name: Betaproteobacteria bacterium


ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Zhejiang Gongshang University


ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Gimesia sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Marinovum sp. F03

ncbi_submitter: IAMM (Interactions Among Marine Microbes)


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Taylorella equigenitalis

ncbi_strain_identifiers: CAPM 6345

ncbi_submitter: Masaryk University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Alcaligenaceae bacterium


ncbi_organism_name: Lancefieldella parvula

ncbi_submitter: Hospital Sirio-Libanes


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Verrucosispora sp. NA02020

ncbi_submitter: BGI Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Candidatus Merdousia sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;f__Intestinicryptomonaceae;g__Candidatus Merdousia;x__unclassified Candidatus Merdousia;s__Candidatus Merdousia sp.


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Arcobacter sp.

ncbi_submitter: Aalborg University


ncbi_assembly_name: freshwater MAG --- LJ-3-65m_bin-0167

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_submitter: University of Pretoria


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. 670102-3


ncbi_country: Colombia

ncbi_isolation_source: Environment

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Antioquia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Hopital Bicetre


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: IMG-taxon 2609459766 annotated assembly

ncbi_organism_name: Microbacterium sp. cf332

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Curvibacter sp. APW13

ncbi_submitter: Dongguk university


ncbi_country: Antarctica: Mackay Glacier regions; Towle Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_organism_name: Streptomyces sp. NRRL F-5702

ncbi_strain_identifiers: NRRL F-5702

ncbi_submitter: University of Illinois


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Acetofilamentum sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: USA

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: ADPXQ

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan

ncbi_isolation_source: human feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_organism_name: Enterobacter cloacae complex sp. EB5

ncbi_submitter: United Kingdom Health Security Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. EB5


ncbi_country: USA: AK

ncbi_isolation_source: feces duck

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Fusicatenibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Photobacterium leiognathi lrivu.4.1

ncbi_submitter: University of Miyazaki


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Germany: west of Rottenburg an der Laaber

ncbi_isolation_source: sediment; groundwater

ncbi_organism_name: Hydrogenophaga taeniospiralis

ncbi_submitter: Helmholtz Zentrum Muenchen


ncbi_country: Australia

ncbi_organism_name: Burkholderia ubonensis MSMB153

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: USA: Florida

ncbi_isolation_source: reared psyllids

ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_submitter: University of Florida


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belgium

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Sciensano


ncbi_country: Tanzania

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: North West province; Dr Kenneth Kaunda district municipality

ncbi_isolation_source: water

ncbi_organism_name: Bacillus sp. 2D02

ncbi_submitter: North-West University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 2D02


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Brucella abortus

ncbi_submitter: INDIAN VETERINARY RESEARCH INSTITUTE


ncbi_organism_name: Coprococcus comes

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_isolation_source: rice rhizosphere

ncbi_organism_name: Pseudomonas sp. 78_B

ncbi_submitter: International Centre for Genetic Engineering and Biotechnology (ICGEB)


ncbi_country: New Zealand

ncbi_isolation_source: low density polyethylene (LPDE) from waste management plant

ncbi_organism_name: Shewanella sp. SM74

ncbi_submitter: AgResearch


ncbi_organism_name: uncultured Aquificales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: cold seep

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China: Malan

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: BGI-Qingdao


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Pseudarthrobacter sp. PvP022

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Brazil

ncbi_isolation_source: swab swine carcass (Sus scrofa domesticus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: University of Florida


ncbi_submitter: Universidad de Zaragoza


ncbi_organism_name: Duncaniella muris


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV3096

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV3096


ncbi_organism_name: Actinotignum sp. UMB0459

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_isolation_source: Environment

ncbi_submitter: Sun Yat-sen University


ncbi_country: Germany: Greifswald

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Romania: Bucharest

ncbi_isolation_source: clinical

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: USA: Connecticut; Hamden

ncbi_isolation_source: flower stigma

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Connecticut Agricultural Experiment Station


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Methylobacteriaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Greece

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_submitter: University of Queensland


ncbi_organism_name: Vibrio sinaloensis

ncbi_submitter: CIAD, A.C.


ncbi_organism_name: Streptomyces daghestanicus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Pseudoalteromonas sp. 78C3

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Corynebacterium sp. KPL4072

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA

ncbi_submitter: Broad Institute


ncbi_country: USA: Massachusetts

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: bronchial secretions

ncbi_organism_name: Staphylococcus aureus M1279


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sediment sample collected from floor of cattle farm

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: The REHAB Consortium


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: Germany: Aachen

ncbi_isolation_source: Feces

ncbi_organism_name: Intestinimonas aquisgranensis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Roizmanbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;x__unclassified Candidatus Roizmanbacteria;s__Candidatus Roizmanbacteria bacterium


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Basel


ncbi_organism_name: Rahnella variigena

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium 21-37

ncbi_submitter: Nanjing University


ncbi_country: Thailand

ncbi_isolation_source: Rectal swab

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: USA: Oklahoma City; OK

ncbi_isolation_source: cervix

ncbi_submitter: Children's Mercy Kansas City


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SC


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_isolation_source: Air filter debris

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_organism_name: Eubacterium multiforme

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Owenweeksia sp.


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Oceanisphaera sp. W20_SRM_FM3

ncbi_submitter: United States Naval Academy


ncbi_organism_name: Povalibacter sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ningbo University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Congregibacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Faecousia sp.


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: LokiAmp MDA-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: INDICASAT AIP


ncbi_organism_name: Streptomyces sp. NPDC057579

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Nottingham Trent University


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: India: Gulf of Kutch

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: soil

ncbi_submitter: KAIST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;s__Streptomyces fradiae;x__Streptomyces fradiae ATCC 10745 = DSM 40063


ncbi_assembly_name: freshwater MAG --- Ja_bin-5855

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_38_13b


ncbi_country: Jordan

ncbi_isolation_source: spice

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Seoul National University


ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Lachnospiraceae bacterium UBA5452

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-7090

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled soil sample collected from floor of poultry farm

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: The REHAB Consortium


ncbi_country: South Korea: Anseong-si

ncbi_organism_name: Chitinophaga chungangae

ncbi_submitter: Chung-Ang University


ncbi_country: Barbados

ncbi_organism_name: Leptospira noguchii

ncbi_strain_identifiers: barbudensis

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_isolation_source: rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_country: Kuwait

ncbi_isolation_source: Sand

ncbi_organism_name: Enhydrobacter sp. H5

ncbi_submitter: Kyonggi University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;x__Hyphomicrobiales incertae sedis;g__Enhydrobacter;x__unclassified Enhydrobacter;s__Enhydrobacter sp. H5


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Africa

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Saudi Arabia:Jeddah

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_country: France: Limoges

ncbi_submitter: Universite Paris Sud


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: nasopharynx


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Canada: Quebec

ncbi_isolation_source: lettuce production field

ncbi_organism_name: Xanthomonas hortorum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Institute of Antibiotics


ncbi_submitter: Spribille Lab


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_assembly_name: Rumen uncultured genome RUG13738

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Citrobacter europaeus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_country: Germany

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: USDA APHIS VS NVSL


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Theseobacter exili

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Auribacterota;c__Candidatus Auribacteria;o__Candidatus Theseobacterales;f__Candidatus Theseobacteraceae;g__Candidatus Theseobacter;s__Candidatus Theseobacter exili

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Auribacterota;c__Candidatus Auribacteria;o__Candidatus Theseobacterales;f__Candidatus Theseobacteraceae;g__Candidatus Theseobacter;s__Candidatus Theseobacter exili


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Romboutsia sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter junii


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Micromonospora gifhornensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2654588113 annotated assembly

ncbi_organism_name: Segatella bryantii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridium celatum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: sputum

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Microbacterium sp. 18062

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_strain_identifiers: AMCR 51

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_organism_name: Enterobacter sichuanensis


ncbi_country: China

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Neisseria lisongii

ncbi_submitter: China CDC


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Peptoniphilus lacrimalis DSM 7455

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Clostridium sp.


ncbi_country: Malaysia: Kuala Pangsun village

ncbi_isolation_source: fecal sample

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: New York University


ncbi_country: USA: NC

ncbi_isolation_source: Yolk Sac

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: human blood of bacteremia patient

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_country: Turkey

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Megasphaera sp.


ncbi_country: USA: Massachusetts

ncbi_isolation_source: UTI

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Tufts University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_submitter: University of Sao Paulo


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Comamonas aquatica

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Helicobacter mastomyrinus

ncbi_submitter: Yangzhou University


ncbi_country: Pakistan: Peshawar

ncbi_isolation_source: Catheter tip

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umea University


ncbi_country: Japan: Nagano; Suwa

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_country: Italy

ncbi_isolation_source: chicken

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Segatella bryantii


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudobdellovibrio sp.

ncbi_submitter: EPFL


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Acidovorax temperans

ncbi_submitter: Tsinghua University


ncbi_organism_name: Rhodothermales bacterium


ncbi_organism_name: Vibrio harveyi

ncbi_strain_identifiers: Kef 75

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_organism_name: Streptomyces sp. Mo3

ncbi_submitter: Newcastle University


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Thiocapsa sp. C2-2m

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Janthinobacterium sp. CG_23.3

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Blautia obeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: anammox marine column reactor biofilm on non-woven sheet

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: KAUST


ncbi_organism_name: Saccharothrix hoggarensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universiti Sains Malaysia


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Cuba: Gardens of the Queen

ncbi_isolation_source: tissue

ncbi_organism_name: Vibrio owensii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Alberta;Edmonton

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: TAILORED-Treatment project


ncbi_assembly_name: freshwater MAG --- MJ_bin-1834

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_assembly_name: IMG-taxon 2698536942 annotated assembly

ncbi_country: Antarctica: Deep Lake

ncbi_organism_name: Vreelandella subglaciescola

ncbi_strain_identifiers: ACAM 12

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Ilumatobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Pittsburgh; PA

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Victivallis vadensis

ncbi_submitter: EMG


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis;sb__Bifidobacterium animalis subsp. lactis;x__Bifidobacterium animalis subsp. lactis AD011


ncbi_organism_name: Vibrio fluvialis NBRC 103150

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_assembly_name: IMG-taxon 2623620516 annotated assembly

ncbi_organism_name: Bacteroides xylanisolvens


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Zhejiang A and F University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hartford


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Sphingobacterium multivorum


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mannheimia haemolytica

ncbi_strain_identifiers: 2543MH;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: China: Beijing

ncbi_isolation_source: food

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Yersinia pestis 945

ncbi_submitter: Beijing Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 945


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_organism_name: Tissierellales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enhydrobacter sp. UBA3108

ncbi_submitter: University of Queensland


ncbi_country: India: Dampa Tiger Reserve Forest

ncbi_organism_name: Microbacterium hydrothermale

ncbi_submitter: CSIR-National Chemical Laboratory, Pune


ncbi_country: Australia: James Cook University; Rainforest site; Queensland

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: CARBpar

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Ndiopella massiliensis

ncbi_organism_name: Clostridiales bacterium SIT11

ncbi_submitter: URMITE


ncbi_country: Korea: Jeju; Hallasan

ncbi_isolation_source: soil

ncbi_organism_name: Aneurinibacillus soli

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Japan: Fukuyama city; Hiroshima Prefecture

ncbi_organism_name: Streptomyces sp. OM5714

ncbi_submitter: University of Cambridge


ncbi_country: Palmyra Atoll

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Okeania sp. SIO2G4

ncbi_submitter: UCSD


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Porticoccus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Faecalibacterium duncaniae

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Hangzhou; Zhejiang

ncbi_isolation_source: vaginal fluids

ncbi_organism_name: Mobiluncus mulieris


ncbi_organism_name: Micropruina sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Low respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: marine water

ncbi_organism_name: K189A clade bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__K189A clade;s__K189A clade bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Hungatella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_isolate: metabat2_pooled_hifiasm.178 MAG

ncbi_organism_name: uncultured Blautia sp.

ncbi_strain_identifiers: metabat2_pooled_hifiasm.178 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Kenya

ncbi_isolation_source: sediments from the five highly alkaline soda lakes of Kenya

ncbi_organism_name: Billgrantia kenyensis

ncbi_submitter: China University of Petroleum (East China)


ncbi_organism_name: Alteromonas australica

ncbi_submitter: University Miguel Hernandez


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Hydrogenobacter thermophilus

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Algoriphagus sp.


ncbi_organism_name: Lactococcus taiwanensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_organism_name: Streptomyces caeni

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: uncultured Hyphomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: SPRUCE 110

ncbi_organism_name: Terriglobia bacterium

ncbi_strain_identifiers: SPRUCE 110

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Methylobacterium sp. NPDC098002

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Upper gallery; floor level; 50-70 cm from the wall

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Streptomyces sp. JAC25

ncbi_submitter: Memorial University of Newfoundland


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Allomeiothermus silvanus

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: feces

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: Canada: British Columbia;Surrey

ncbi_isolation_source: river water

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: China

ncbi_isolation_source: bile

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Bern


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus sp. UMB8623

ncbi_submitter: Loyola University Chicago


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-3-13

ncbi_submitter: Curtin University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1703

ncbi_submitter: Broad Institute


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Ghana: Accra

ncbi_isolation_source: Surface swabs of meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Argentina: Vila; Santa Fe

ncbi_isolation_source: first pond of the AUR serial dairy industry stabilization pond system

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: INTA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Chosun University


ncbi_country: China: Lhasa; Tibet

ncbi_isolation_source: Fermented yak milk

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Enterococcus avium

ncbi_submitter: Icahn School of Medicine


ncbi_country: Italy

ncbi_isolation_source: Infant Stool

ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: University of Parma


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter ludwigii


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Henriciella pelagia

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Qixiashan Nature Park

ncbi_isolation_source: decomposite soil

ncbi_organism_name: Clostridium sp. CT7

ncbi_submitter: Nanjing Tech University


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Desulfobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- MJ130729B_bin-239

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acinetobacter baumannii 24975_9

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Atlantic Ocean

ncbi_isolation_source: skin

ncbi_organism_name: Pseudoalteromonas sp. APC 4026

ncbi_submitter: University College Cork


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Alistipes ihumii AP11

ncbi_submitter: ebi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes ihumii;x__Alistipes ihumii AP11


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Portugal: Aveiro

ncbi_isolation_source: Intra-abdominal infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: China: Shenzhen

ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: BGI


ncbi_country: Germany

ncbi_isolation_source: kefir

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: KR

ncbi_submitter: SysMilk


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Clostridioides difficile CD8


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Australia: Queensland

ncbi_isolation_source: Skin lesion swab

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: The University of Queensland


ncbi_organism_name: Tetragenococcus halophilus subsp. halophilus

ncbi_strain_identifiers: NISL 7126

ncbi_submitter: Genome Research Center, NODAI Research Institute, Tokyo University of Agriculture


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: CSIR-NCL


ncbi_country: Norway: Bergen

ncbi_organism_name: Klebsiella sp. K5-309

ncbi_submitter: Institute of Marine research


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: COPD W6b

ncbi_submitter: Chengdu University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: vinegar factory

ncbi_organism_name: Acetobacter pasteurianus

ncbi_submitter: Zhejiang Gongshang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: CNRZ 920

ncbi_submitter: INRA GRIGNON


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli KTE222

ncbi_submitter: Broad Institute


ncbi_country: Czech Republic

ncbi_isolation_source: gloves

ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: FDA/CFSAN


ncbi_country: New Zealand: Hikurangi Margin

ncbi_isolation_source: Glendhu Ridge methane seep

ncbi_organism_name: Lutibacter sp.

ncbi_submitter: GNS Science


ncbi_country: USA: Houston

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Flavobacterium plurextorum

ncbi_submitter: Universite Laval


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Rhodomicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Candidatus Faecivicinus avistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Faecivicinus;s__Candidatus Faecivicinus avistercoris


ncbi_isolate: AOP35_04H_surf _bin _10

ncbi_organism_name: Senegalia sp. (in: firmicutes)

ncbi_strain_identifiers: AOP35_04H_surf _bin _10

ncbi_submitter: Genoscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Senegalia;x__unclassified Senegalia (in: firmicutes);s__Senegalia sp. (in: firmicutes)


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Dilute Hydrothermal Plume

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: AOP24_D1_surf _bin _2

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP24_D1_surf _bin _2


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chifeng Center for Disease Control and Prevention


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: California Department of Public Health


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: China: South China Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Brevibacillus marinus

ncbi_strain_identifiers: SCSIO 07484

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_isolation_source: Tocosh; potatoes naturally fermented in a well near a water spring

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: CECT 9269

ncbi_submitter: UVEG


ncbi_country: China: nanchang

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Cockless

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_country: USA: KS

ncbi_isolation_source: Sow

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N59613F

ncbi_submitter: FDA


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_country: Singapore

ncbi_isolation_source: RECTAL

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: China: Guangxi

ncbi_isolation_source: food

ncbi_organism_name: Salmonella sp. gx-f7

ncbi_submitter: Shenzhen People's Hospital


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Thailand

ncbi_organism_name: Brucella melitensis F10/06-16

ncbi_submitter: Broad Institute


gtdb_type_species_of_genus: t

ncbi_country: South Korea

ncbi_organism_name: Dankookia rubra

ncbi_submitter: Shandong University at Weihai


ncbi_country: South Korea: Gangjeong freshwater

ncbi_isolation_source: freshwater

ncbi_organism_name: Aquibium microcysteis

ncbi_submitter: korea university


ncbi_country: China: Guangzhou

ncbi_isolation_source: gut

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Collinsella sp. CLA-ER-H3

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: China: Shanghai

ncbi_isolation_source: cecum

ncbi_organism_name: Campylobacter coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China:Hubei; Huangshi

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_strain_identifiers: GPS7 HBHS 2017-3

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Israel: Negev desert

ncbi_isolation_source: desert sand [ENVO_00005800]

ncbi_organism_name: Bartonella krasnovii

ncbi_submitter: Hebrew university


ncbi_isolation_source: metagenome

ncbi_organism_name: Chlamydia gallinacea

ncbi_submitter: addis ababa university


ncbi_country: Uruguay

ncbi_isolation_source: nodules

ncbi_organism_name: Frankia sp. Allo2

ncbi_submitter: University of New Hampshire


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: urine

ncbi_submitter: Roskilde University


ncbi_organism_name: Fontimonas sp. SYSU GA230001

ncbi_strain_identifiers: SYSU GA230001

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas sp. UBA7651

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: France: Lille

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Ethiopia: Babile; Somali region

ncbi_isolation_source: fermented camel milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Research Group for Gut, Microbes and Health


ncbi_country: Russia: North Ossetia

ncbi_isolation_source: cheese

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: water

ncbi_organism_name: Flavobacterium sp. SUN052

ncbi_submitter: Korea research institute of biotechnology bioscience


ncbi_organism_name: Pseudoneobacillus sp.

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom: England

ncbi_isolation_source: Urine (CYSTO)

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Spain: Madrid

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_country: China: Yancheng

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The second Affiliated Hospital of Soochow University


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Caulobacter sp. CCNWLY153

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University hospital Lubeck


ncbi_country: USA: California

ncbi_isolation_source: poultry

ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: USDA


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Mycoplasma sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Streptomyces althioticus


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_country: India: New Delhi

ncbi_submitter: All India Institute of Medical Sciences


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Pseudoflavonifractor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Thailand: Ratchaburi

ncbi_isolation_source: animal feces

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Chulalongkorn University


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Streptomyces sp. NPDC005865


ncbi_country: Estonia

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: Cilantro

ncbi_organism_name: Enterobacter cancerogenus

ncbi_strain_identifiers: MiY-F

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Megasphaera elsdenii


ncbi_organism_name: Cupriavidus nantongensis

ncbi_submitter: Chinese academy of medical sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Serratia nevei

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: First Affiliated Hospital of Guangzhou Medical University,Guangzhou Institute of Respiratory Health,


ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_organism_name: Janthinobacterium sp. HLS12-2

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Roseburia faecis


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: China: Anhui; Maanshan

ncbi_organism_name: Leptospirillum sp.


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Fastidiosipila sp.


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Coprococcus comes

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Campylobacter subantarcticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Romania: Movile Cave; Mangalia

ncbi_organism_name: Methylomonas sp. LWB

ncbi_strain_identifiers: LWB

ncbi_submitter: University of Western Australia


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptococcus sp. HMSC061E03

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with inulin

ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Anhui; Wuhu

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gardnerella vaginalis 6420B

ncbi_submitter: Center for Genomic Sciences, Allegheny-Singer Research Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Dorea formicigenerans


ncbi_country: France

ncbi_isolation_source: air

ncbi_organism_name: Pseudomonas graminis

ncbi_submitter: UCA


ncbi_country: Mexico

ncbi_isolation_source: Nodule

ncbi_organism_name: Paraburkholderia sp. LEh10

ncbi_submitter: Instituto Politecnico Nacional


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cloacae swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Halifax

ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_isolation_source: Cave soil

ncbi_organism_name: Ectobacillus antri

ncbi_strain_identifiers: SYSU K30001

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Coprocola pullicola

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Coprocola;s__Candidatus Coprocola pullicola


ncbi_country: Brazil

ncbi_organism_name: Paenibacillus brasilensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Argentina: Buenos Aires; Balcarce

ncbi_isolation_source: tissue sample

ncbi_submitter: South American Mycobacterium bovis WGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Treponema denticola


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium beijerinckii


ncbi_organism_name: Streptomyces sp. TSRI0445

ncbi_submitter: The Scripps Research Institute


ncbi_organism_name: Rivihabitans pingtungensis


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Germany: Jena; garden Neugasse

ncbi_isolation_source: leaf [PO:0025034 leaf]

ncbi_organism_name: Pantoea sp. Ft-CA_14

ncbi_submitter: Friedrich-Schiller-Universitaet


ncbi_country: Pacific Ocean

ncbi_isolation_source: Chile-Peru Current Coastal Province

ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut of vertebrate mammal

ncbi_organism_name: Lachnospiraceae bacterium UBA629

ncbi_submitter: University of Queensland


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_submitter: EMG


ncbi_organism_name: Streptomyces exfoliatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology