ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of KwaZulu Natal


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: URMITE


ncbi_country: Brazil

ncbi_organism_name: Chromobacterium violaceum

ncbi_submitter: NCAUR-ARS-USDA


ncbi_country: South Korea: Changwon

ncbi_isolation_source: food

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Changwon National University


gtdb_type_species_of_genus: t

ncbi_assembly_level: Scaffold

ncbi_organism_name: Moritella marina ATCC 15381

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


gtdb_representative: t

ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: Thailand: Trang

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: China

ncbi_isolation_source: lung

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: SalTypBL196 1.0

ncbi_country: Malaysia: Kelantan

ncbi_submitter: University of Hyderabad

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi;x__Salmonella enterica subsp. enterica serovar Typhi str. BL196


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_assembly_level: Complete Genome

ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea sediment from Mariana Trench

ncbi_organism_name: Alterirhizorhabdus profundi

ncbi_refseq_category: reference genome

ncbi_submitter: Shanghai Jiao Tong University


ncbi_assembly_level: Chromosome

ncbi_submitter: Peking University People's Hospital


ncbi_country: Norway: Bergen

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: slaughtered pig

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar London


ncbi_organism_name: Enterococcus faecalis


ncbi_country: South Korea

ncbi_isolation_source: sea sediment

ncbi_organism_name: Brevibacillus sp. 7WMA2

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology (KRIBB)


ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: EMG


ncbi_country: Cuba: Nueva Paz

ncbi_isolation_source: Cloacal sample

ncbi_submitter: University of Bern


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: University of Queensland


ncbi_country: USA: Atlanta; GA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_submitter: U.S. Food and Drug Administration


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces olivaceus

ncbi_strain_identifiers: NRRL B-3009

ncbi_submitter: University of Illinois


ncbi_assembly_name: Rumen uncultured genome RUG14560

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_country: Egypt

ncbi_isolation_source: Head LN

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Puerto Rico: SALINAS

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia sp. Bp9010

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Iowa State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Porticoccaceae bacterium UBA1989

ncbi_submitter: University of Queensland


ncbi_country: Spain

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Changsha

ncbi_isolation_source: liver abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing genomics institute


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Pantoea brenneri

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Candidatus Methylomirabilia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;x__unclassified Candidatus Methylomirabilia;s__Candidatus Methylomirabilia bacterium


ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium GW2011_GWA1_41_8


ncbi_country: China: Hubei

ncbi_isolation_source: Shellfish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: KSC 155

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: uncultured Actinoplanes sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Salmonella sp. SC45

ncbi_submitter: Sichuan University


ncbi_isolate: Streptococcus species

ncbi_isolation_source: Human

ncbi_organism_name: bacterium

ncbi_strain_identifiers: Streptococcus species

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: Respiratory specimen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College, Vellore


ncbi_isolation_source: lake water

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lacunisphaera sp.


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces nigrescens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Stenotrophomonas sp.


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_isolation_source: cold seep

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Morocco

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chungbuk National University Hospital


ncbi_organism_name: Coleofasciculaceae cyanobacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Shandong University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Thailand: Kuan Kreng

ncbi_isolation_source: Constructed Wetland Sediment

ncbi_organism_name: Desulfovibrio sp. UIB00

ncbi_submitter: Thaksin University


ncbi_country: Australia

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China: KunMing

ncbi_isolation_source: bee bread from Apis cerana

ncbi_organism_name: Lactobacillus panisapium

ncbi_submitter: Biogas Institute of Ministry of Agriculture


ncbi_country: Colombia: Magdalena

ncbi_isolation_source: Untreated water

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_country: China: Hunan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Parvimonas micra


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Fenyang; Shanxi

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_country: China: Shenzhen

ncbi_organism_name: Olsenella sp. AM05-7

ncbi_submitter: BGI


ncbi_country: China: Zhejiang

ncbi_isolation_source: river sediments

ncbi_organism_name: Aeromonas taiwanensis


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)


ncbi_country: Chile: Lirima

ncbi_isolation_source: microbial mat

ncbi_organism_name: Streptomyces sp. LB8

ncbi_submitter: Universidad Catolica del Norte


ncbi_organism_name: Eubacterium sp. 3_1_31

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. 3_1_31


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Peptococcia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;c__Peptococcia;x__unclassified Peptococcia;s__Peptococcia bacterium


ncbi_organism_name: Kosmotogaceae bacterium


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Lebanon

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Pseudorhodobacter sp.

ncbi_submitter: EMG


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Fibrimonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;c__Fibrobacteria;o__Candidatus Fibrimonadales;f__Candidatus Fibrimonadaceae;s__Candidatus Fibrimonadaceae bacterium


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: Canada: Ontario

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_organism_name: Spiroplasma taiwanense CT-1

ncbi_submitter: Academia Sinica


ncbi_organism_name: Pseudescherichia sp.


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Alteromonas stellipolaris

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Dethiobacter alkaliphilus AHT 1

ncbi_strain_identifiers: AHT 1

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: China: Henan

ncbi_isolation_source: physical

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 108

ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: SNUC 233

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Heilongjiang

ncbi_isolation_source: lung

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_organism_name: Mesorhizobium sp. M0684

ncbi_submitter: Washington State University


ncbi_organism_name: Streptococcus pyogenes GA03455

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Spain: Madrid

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Vulcanococcus sp. CPBay_Sum15G08_31

ncbi_submitter: Clemson University


ncbi_submitter: Idaho Bureau of Laboratories


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Faecalitalea cylindroides ATCC 27803

ncbi_submitter: WUGSC


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_country: Panama: Bocas del Toro; Punta Caracol

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Stony Brook University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: Nashville; Tennessee

ncbi_isolation_source: contaiminated cellulose-agar plate

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Tennessee State University


ncbi_organism_name: Mycobacterium pseudokansasii

ncbi_submitter: CHUV-UNIL


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Terryibacteriota;s__Candidatus Terrybacteria bacterium RIFCSPHIGHO2_01_FULL_43_35


ncbi_isolation_source: food sample

ncbi_submitter: University of Coimbra

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alteromonadaceae bacterium


ncbi_organism_name: Campylobacter canadensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Citrobacter sp. HN-120

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: China

ncbi_isolation_source: anaerobic digsetion effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Gemmiger stercoravium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;s__Candidatus Gemmiger stercoravium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: South Africa

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute for Communicable Disease


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Academia Sinica


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: China: Hangzhou

ncbi_isolation_source: Patient blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Department of Pharmacy, Shaoxing Hospital of Traditional Chinese Medicine Affiliated to Zhejiang Chi


ncbi_country: USA: NY

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Jiangsu

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: Slovakia

ncbi_isolation_source: Industrial producer of L-lysine

ncbi_organism_name: [Brevibacterium] flavum

ncbi_submitter: Comenius university


ncbi_organism_name: Vreelandella aquamarina

ncbi_submitter: Keio University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. AF05-8-2

ncbi_submitter: BGI


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Saccharofermentanales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: shandong university


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Don State Technical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Streptomyces sp. NPDC059538

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Methylococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Multivoraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;f__Candidatus Multivoraceae;x__unclassified Candidatus Multivoraceae;s__Candidatus Multivoraceae bacterium


ncbi_organism_name: uncultured Spongiibacteraceae bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp2 AA108

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp2 AA108

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_organism_name: Candidatus Woodwardiibium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Woodwardiibium;x__unclassified Candidatus Woodwardiibium;s__Candidatus Woodwardiibium sp.


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_submitter: Northeastern University


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Shandong University


ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-079

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Prevotella nigrescens

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_isolation_source: metagenome

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: University of Queensland


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Salinispora pacifica CNR114

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 16_1


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hanzhong Central Hospital


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Kenya

ncbi_organism_name: Bifidobacterium sp. UBA7585


ncbi_country: Sweden: Stordalen mire

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Cryosericum hinesii

ncbi_submitter: The Ohio State University

ncbi_taxonomy: d__Bacteria;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;s__Candidatus Cryosericum hinesii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;s__Candidatus Cryosericum hinesii


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDB20D115P1

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coriobacteriaceae bacterium AM49-12

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa46

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: Austria

ncbi_isolation_source: milk sample

ncbi_submitter: University of Lausanne


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Corrosion of stainless steel welds

ncbi_organism_name: Methylorubrum extorquens

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Megasphaera elsdenii


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Australia: New South Wales

ncbi_isolation_source: lung

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: University of the Sunshine Coast


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Sri Lanka: Colombo

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Corvallis


ncbi_country: China

ncbi_organism_name: Pseudidiomarina sediminum DSM 21906

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_organism_name: Microbacterium sp. NPDC076911

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bordetella pertussis Tohama I

ncbi_strain_identifiers: Tohama I

ncbi_submitter: Sanger Institute


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_isolation_source: stool sample from 53 year old healthy female

ncbi_organism_name: Bacteroides sp. N54.MGS-20

ncbi_submitter: The Mayo Clinic


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: groundwater

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: University of California Davis


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1077

ncbi_submitter: Broad Institute


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_country: Cote d Ivoire

ncbi_isolation_source: fermented cassava

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Brigham Young University


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Salmonella sp. HMSC13B08

ncbi_submitter: The Genome Institute at Washington University


ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: Laboratory

ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: University of Manchester


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Usitatibacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acinetobacter thermotolerans

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences


ncbi_isolation_source: Human Stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridium cochlearium

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Acinetobacter baumannii 1022959

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Escherichia coli M7

ncbi_submitter: Department of Pediatrics, Washington University School of Medicine


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Thermodesulfovibrio thiophilus

ncbi_submitter: CLUE-TERRA


ncbi_country: South Korea: Gimcheon

ncbi_isolation_source: tissue

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_isolation_source: blood culture of a hospitalized patient

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Department of Bacteriology, Osaka City University Graduate School of Medicine


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: EMG


ncbi_submitter: University of Alberta


ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Alistipes indistinctus


ncbi_country: China: Liaocheng

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University College London (UCL)


ncbi_country: USA: WA

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Gluconobacter cerinus

ncbi_submitter: Cornell University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Pontimonas sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Russia: Moscow

ncbi_isolation_source: blood

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Methanobacteriota archaeon

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Burkholderia sp. NLJ2

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Medical City


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Saccharothrix saharensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Stenotrophomonas lactitubi

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_isolate: SPRUCE 139

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_strain_identifiers: SPRUCE 139

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Gordonibacter urolithinfaciens

ncbi_submitter: Harvard University


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. NPDC091265


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_country: China: Dongguan City; composting demonstration plant

ncbi_isolation_source: composting

ncbi_organism_name: Bacillus thermotolerans

ncbi_submitter: Southern Medical University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Horisme vitalbata


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Bartonellaceae;g__Bartonella;s__Bartonella elizabethae;x__Bartonella elizabethae F9251 = ATCC 49927


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia ruysiae

ncbi_submitter: McGill University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Queensland


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Surface of a polyethylene microplastic particle present in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Ruegeria sp. THAF33

ncbi_submitter: Uni Bielefeld


ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Oerskovia jenensis


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Universite Laval


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Fusobacterium sp. DD43

ncbi_submitter: University of Calgary


ncbi_organism_name: Dongiaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Comamonas granuli NBRC 101663

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, IPN


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Antarctica: Prydz Bay

ncbi_isolation_source: sea ice algal assemblage

ncbi_organism_name: Colwellia hornerae

ncbi_strain_identifiers: ACAM 607

ncbi_submitter: University of Tasmania


ncbi_country: Denmark

ncbi_isolation_source: rapid sand filter

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: patient with infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: offshore reef; Sand Key Lighthouse; FL

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Halomonas sp. McD50-4

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Rio Hondo Golf Course; Downey; California

ncbi_isolation_source: Dead Mole Cricket

ncbi_organism_name: Serratia marcescens

ncbi_submitter: UCR


ncbi_country: Antarctica

ncbi_isolation_source: soil

ncbi_organism_name: Massilia varians

ncbi_submitter: Shibaura institute of technology


ncbi_isolation_source: marine

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Lake Washington

ncbi_organism_name: Flavobacterium sp. 103

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Pus swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_isolation_source: sediment

ncbi_organism_name: Methylophilus sp. UBA6697


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae BHN237

ncbi_submitter: Umea University, Sweden


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_assembly_name: IMG-taxon 2617270728 annotated assembly

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_organism_name: Demequina sp. TTPB684

ncbi_submitter: fudan university


ncbi_country: China: Zhe Jiang

ncbi_isolation_source: nasal fester cultures

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Run Run Shaw Hospital,


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_country: China: Guangdong

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Weltevreden

ncbi_submitter: Guangdong CDC


ncbi_country: Norway

ncbi_isolation_source: Human

ncbi_organism_name: Brucella melitensis

ncbi_submitter: NORWEGIAN INSTITUTE OF PUBLIC HEALTH


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Brazil

ncbi_isolation_source: swine feces (Sus scrofa domesticus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 106

ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: SNUC 27

ncbi_submitter: University of Calgary


ncbi_country: Lebanon

ncbi_isolation_source: river water

ncbi_submitter: University of Georgia


ncbi_organism_name: Catellicoccus marimammalium M35/04/3

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Staphylococcus sp. HMSC14D10

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_assembly_name: IMG-taxon 2585428145 annotated assembly

ncbi_organism_name: Eubacterium uniforme


ncbi_strain_identifiers: OSS 550

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oslo


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: single strain isolated from microbial consortium enriched at the cathode of a solar microbial fuel cell originally enriched from seawater collected near Rutgers; NJ

ncbi_organism_name: Alcanivorax sp. CP2C

ncbi_submitter: US Naval Research laboratory


ncbi_country: USA: Massachusetts; Boston

ncbi_submitter: Broad Institute


ncbi_country: India: Vellore

ncbi_submitter: Christian Medical College


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Huashan Hospital


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: NDmed

ncbi_submitter: Biotechnical Faculty, University of Ljubljana


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_country: USA: Arizona

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Pectobacterium colocasium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium KLE1615

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_assembly_name: freshwater MAG --- KR5_bin-377

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_submitter: EMG


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaerotruncus;s__Anaerotruncus massiliensis (ex Liu et al. 2021)


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: Salmonella sp. 2021_1584

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: USDA


ncbi_organism_name: Eikenella corrodens

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Pelomonas candidula

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Enterobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: AAFC


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Escherichia sp. 364

ncbi_submitter: Xiangya hospital, Central South University


ncbi_organism_name: Streptomyces sp. NBC_00624

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Salinispira sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0248

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Herd 102

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: SNUC 75

ncbi_submitter: University of Calgary


ncbi_organism_name: Pantoea eucrina

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- Loc090721-6m_bin-295

ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_country: Bangladesh: Bara Haldia; Matlab upazilla

ncbi_isolation_source: well water

ncbi_organism_name: Anaerolineales bacterium UBA4142

ncbi_submitter: University of Queensland


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Wilmar International Limited


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_submitter: Instituto de Biomedicina de Sevilla (IBIS)


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Canada

ncbi_isolation_source: water

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Texas Tech University


ncbi_country: USA: Georgia;Atlanta

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_assembly_name: Campylobacter jejuni CVM 41943 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter jejuni CVM 41943

ncbi_submitter: FDA/CVM


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexi bacterium HGW-Chloroflexi-2

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium HGW-Chloroflexi-2


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Faucicola atlantae

ncbi_submitter: SC


ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Rikenella sp.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: testis

ncbi_organism_name: Mycoplasma tauri

ncbi_submitter: Institute of Microbiology


ncbi_country: Japan

ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Toho University


ncbi_organism_name: Roseburia intestinalis


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-2060

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Moorena producens

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gardnerella vaginalis 41V

ncbi_submitter: Virginia Commonwealth University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_country: Mexico

ncbi_isolation_source: feces (Gallus gallus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_strain_identifiers: Klin

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: Australia: New South Wales

ncbi_isolation_source: urine

ncbi_submitter: The University of Queensland


ncbi_organism_name: Bifidobacterium longum

ncbi_strain_identifiers: BIM B-813D

ncbi_submitter: Institute of Microbiology, Belarus National Academy of Sciences


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Calgary


ncbi_country: Pakistan:Faisalabad region

ncbi_organism_name: Planococcus sp. NCCP-2050

ncbi_submitter: Pakistan Agricultural Research Council (PARC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Planococcus;x__unclassified Planococcus (in: firmicutes);s__Planococcus sp. NCCP-2050


ncbi_submitter: Kenya Medical Research Institute


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Mycobacterium tuberculosis T92

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: PARUL UNIVERSITY


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: skin sore / abscess / burns / IV Site


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_organism_name: Prochlorococcus sp. MIT 1313

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Dialister invisus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Guangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Jinan university


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Nonomuraea roseoviolacea subsp. carminata

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: SampleT

ncbi_submitter: California Department of Public Health


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A56


ncbi_country: China: Guangdong; Shenzhen coast

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Graduate School at Shenzhen, Tsinghua University


ncbi_assembly_name: freshwater MAG --- Ja1-D5_bin-744

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: France: Marseille

ncbi_isolation_source: intra-abdominal abcess

ncbi_organism_name: Fusobacterium simiae

ncbi_submitter: Institut Hospitalo-Universitaire IHU


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: Mycobacterium sp. SMC-18

ncbi_submitter: Samsung Medical Center


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Weeksellaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces wuyuanensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Actinobacteria bacterium UBA7442

ncbi_submitter: University of Queensland


ncbi_country: Iceland

ncbi_isolation_source: gut from farmed juvenile Arctic char

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Matis ohf


ncbi_assembly_name: Rumen uncultured genome RUG10933

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Haemophilus sp. HN-Hi25

ncbi_submitter: Hunan Children's hospital


ncbi_organism_name: Burkholderiales bacterium


ncbi_country: Russia: Tyumen region; river Iryum

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-4138

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Lithuania

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Granulicatella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Dysgonomonas sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22789;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Pelagimonas sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Yantai University


ncbi_country: China: Shenzhen

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: SG

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Pittsburgh; Pennsylvania Magee Womens Hospital

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Sphingobium sp.


ncbi_country: Cameroon: Northern Cameroon

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Brazil: Mata da Estrela; RN

ncbi_organism_name: Streptomyces sp. Tu 6176

ncbi_submitter: Universidad de Oviedo


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Mycobacterium paraseoulense

ncbi_submitter: San Raffaele Scientific Institute


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5249

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5249


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Svalbard: Van Kuelenfjorden

ncbi_isolate: MAG AM4

ncbi_isolation_source: marine sediment

ncbi_strain_identifiers: MAG AM4

ncbi_submitter: University of Vienna

ncbi_taxonomy: d__Bacteria;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;o__Candidatus Polarisedimenticolales;f__Candidatus Polarisedimenticolaceae;g__Candidatus Polarisedimenticola;s__Candidatus Polarisedimenticola svalbardensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;o__Candidatus Polarisedimenticolales;f__Candidatus Polarisedimenticolaceae;g__Candidatus Polarisedimenticola;s__Candidatus Polarisedimenticola svalbardensis


ncbi_country: India

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_assembly_name: De novo assembly of KCRI isolate RDK37_35

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_isolation_source: gut

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ130605B_bin-061

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Obihiro University of Agriculture and Veterinary Medicine


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_submitter: sichuan university


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Clostridium beijerinckii


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Lachnoanaerobaculum sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: BAL

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_isolation_source: Chardonnay wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: CREA-Viticoltura ed Enologia


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial washings

ncbi_organism_name: Staphylococcus aureus M1013

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Intrasporangium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Hospital

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P89P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: saliva from healthy child

ncbi_organism_name: Streptococcus salivarius K12

ncbi_submitter: Nestle Research Center


ncbi_country: Germany: Baiersbronn / Baden-Wuerttem; grassy slope

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_00401

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Switzerland

ncbi_submitter: University of Bern


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Iodidimonas gelatinilytica

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Sedimentisphaerales bacterium


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_organism_name: Chloracidobacterium sp. UBA6041

ncbi_submitter: University of Queensland


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Saint-Louis Hospital


ncbi_country: Belgium

ncbi_isolation_source: Zoo Antwerpen

ncbi_submitter: Faculty of Veterinary Medicine, Ghent University


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Thermomicrobiaceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: KSC 339

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW704-F2

ncbi_submitter: Arkin Lab


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Ghana: Nyankpala site 1

ncbi_isolation_source: Kantong

ncbi_organism_name: Bacillus safensis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_assembly_name: freshwater MAG --- Umea2_bin-1816

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_country: Russia: Kazan

ncbi_organism_name: Acholeplasma laidlawii

ncbi_submitter: Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Peribacillus sp. NPDC101481

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Manitoba


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Sheffield


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_name: freshwater MAG --- Loclat_bin-10281


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nocardia farcinica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: Netherlands

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: Norway: Viken

ncbi_submitter: Norwegian University of Life Sciences


ncbi_isolation_source: Vitamin B2 feed additive

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Sciensano


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Monash University


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Candidatus Tisiphia;x__unclassified Candidatus Tisiphia;s__Candidatus Tisiphia endosymbiont of Sialis lutaria


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Rahnella inusitata

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: The James Hutton Institute


ncbi_assembly_name: freshwater MAG --- Umea_bin-01111

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pathology Lab

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: Russia: Moscow

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_country: China: Inner Mongolia Autonomous Region

ncbi_isolation_source: Pus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Japan

ncbi_isolation_source: Uriue

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_isolation_source: mud

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universidad de los Andes


ncbi_country: USA: Henry; IL

ncbi_isolation_source: Ground beef

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Tufts University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Alteromonas macleodii


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium


ncbi_country: Thailand: Phitsanulok

ncbi_submitter: Cardiff University


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Guangdong

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: [Eubacterium] siraeum


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Terribacillus saccharophilus

ncbi_submitter: Bielefeld University


ncbi_isolation_source: soil

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Germany: Hamburg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_organism_name: Anaeromyxobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India: Punjab

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Guru Nanak Dev University


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Paraprevotella sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Armatimonadia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Acinetobacter baumannii


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Laboratorios veterinarios Lasser


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Mariniflexile sp. TRM1-18

ncbi_submitter: Yonsei University


ncbi_assembly_name: Rumen uncultured genome RUG10475

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Monash University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA4981

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA4981


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shenzhen

ncbi_organism_name: Mitsuokella multacida

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Salipiger sp.

ncbi_submitter: Xiamen University


ncbi_country: China: Ningxia

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_country: New Caledonia

ncbi_organism_name: Leptospira gomenensis

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Universidad de Sonora


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: IMG-taxon 2615840706 annotated assembly

ncbi_organism_name: Tritonibacter multivorans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_country: India

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: CRN 23

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_assembly_name: Rumen uncultured genome RUG14820

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12695


ncbi_country: Italy

ncbi_organism_name: Azorhizobium sp. AG788

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Wugao Liu, Male, Master, associate senior technologist, graduate from Guizhou Medical University.


ncbi_country: Hong Kong

ncbi_isolation_source: water

ncbi_organism_name: Holosporaceae bacterium UBA5542

ncbi_submitter: University of Queensland


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_assembly_name: Dd1 Dg vc

ncbi_isolate: Dd1 Dg vc

ncbi_isolation_source: vc

ncbi_organism_name: Candidatus Protofrankia californiensis

ncbi_strain_identifiers: Dd1 Dg vc

ncbi_submitter: CEBITEC


ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: United Kingdom

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Coraliomargarita sp. TMED73

ncbi_submitter: University of Southern California


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Arthrobacter glacialis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Butyrivibrio sp. CAG:318

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: NanJing University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Capnocytophaga granulosa


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Spain: Madrid

ncbi_isolation_source: clinical

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Hospital Universitary 12 de octubre


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Megasphaera sp.


ncbi_country: China: Beijing

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_country: China: Zhejiang

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: spinach

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21343


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan