ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_level: Contig

ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_country: USA

ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: New York City

ncbi_isolation_source: meninges

ncbi_organism_name: Streptococcus azizii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


gtdb_representative: t

ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2585428080 annotated assembly

ncbi_organism_name: Desulfofustis glycolicus DSM 9705

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: JCVI


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Ruminococcus sp. CAG:488


ncbi_isolation_source: wastewater from WWTP

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shandong University


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Ureibacillus;s__Ureibacillus massiliensis;x__Ureibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: pus

ncbi_submitter: Zhejiang University


ncbi_country: USA: Georgia

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae NP141

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: USA: NY

ncbi_isolation_source: intestine

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: spleen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Germany: Hesse

ncbi_isolation_source: cow udder

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Hessian State Laboratory


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudocitrobacter faecalis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterococcus pernyi

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC048172

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Stockholm University


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Oligoflexia bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolate: spongia

ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: BGI Research


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Deep-Sea Bioresource Research Group , Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: State Key Laboratory of Agricultural Microbiology


ncbi_country: Philippines

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Philippine Genome Center


ncbi_country: Switzerland

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: USA: Green Canyon; Gulf of Mexico

ncbi_isolation_source: 10 Gulf of Mexico water column samples before the DWH oil spill

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: National Oceanic & Atmospheric Administration


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Switzerland: Neuchatel

ncbi_isolation_source: water of eutrophic lake

ncbi_organism_name: Herbaspirillum autotrophicum

ncbi_submitter: INCT FOR BIOLOGICAL NITROGEN FIXATION


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_assembly_level: Chromosome

ncbi_assembly_name: IMG-taxon 2617270709 annotated assembly

ncbi_organism_name: Psychrobacter sp. LV10R520-6

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA3603

ncbi_submitter: University of Queensland


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: Sweden: Kalmar

ncbi_isolation_source: feces

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Region Kalmar County


ncbi_organism_name: Thalassobaculaceae bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Texas

ncbi_isolation_source: respiratory

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: China: Shanghai

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Desulfosarcina sp. BuS5

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Budviciaceae;g__Leminorella;s__Leminorella grimontii;x__Leminorella grimontii ATCC 33999 = DSM 5078


ncbi_country: USA: Illinois

ncbi_isolation_source: River

ncbi_organism_name: Malikia spinosa

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Gordonia oleivorans

ncbi_submitter: Kyonggi university


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Bacillus cereus group sp. BceL291

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL291


ncbi_country: USA:Florida; Big Torch Key

ncbi_organism_name: Micromonospora sp. WMMD714

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Maryland

ncbi_organism_name: New Jersey aster yellows phytoplasma

ncbi_strain_identifiers: NJAY

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrI (Aster yellows group);s__New Jersey aster yellows phytoplasma


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_country: Netherlands

ncbi_isolation_source: Plant tissue

ncbi_organism_name: Xylella fastidiosa subsp. pauca

ncbi_submitter: Auburn University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kasetsart University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Germany: Jena

ncbi_isolation_source: throat swab neonate

ncbi_submitter: Jena University Hospital


ncbi_country: USA: New York City

ncbi_isolation_source: skin-AD site

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Nangjing agricultural university


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Columbia University


ncbi_country: Germany

ncbi_isolation_source: soft tissue

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Cellulomonadaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: gut (Ileum)

ncbi_organism_name: Parablautia sp. Marseille-Q6255

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Zheijiang

ncbi_organism_name: Acinetobacter baumannii MDR-ZJ06

ncbi_submitter: State Key Laboratory of Diagnosis and Treatment for Infectious Disease, the First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Dermatology


ncbi_organism_name: Marinobacterium sp.


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: China: Jiangsu Province; Nantong City

ncbi_isolation_source: seawater

ncbi_organism_name: Qipengyuania sp. XHP0207

ncbi_submitter: Hohai University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: beer

ncbi_organism_name: Pediococcus claussenii

ncbi_submitter: Shanghai Majorbio


ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Staphylococcus aureus


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_assembly_name: Rubeoparvulum massiliensis

ncbi_organism_name: Rubeoparvulum massiliense

ncbi_submitter: URMITE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Comamonas sp. lk

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_country: Brazil: Parana

ncbi_organism_name: Paraburkholderia sp. CNPSo 3076

ncbi_strain_identifiers: CNPSo 3076

ncbi_submitter: Universidade Estadual de Ponta Grossa


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Helicobacter ganmani


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: Colorado State University


ncbi_organism_name: Salmonella sp. C3317

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella sp. SKLX063341

ncbi_submitter: Zhejiang university


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pantoea allii

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Breznakibacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Streptomyces sp. NPDC005245


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: Spain

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: CA

ncbi_isolation_source: skin salmon

ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_submitter: University of Calgary


ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Helicobacter fennelliae MRY12-0050

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Escherichia coli AZ1114

ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_country: South Korea: Seoul

ncbi_isolation_source: hospital

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Seoul Metropolitan Government Research Institute of Public Health and Environment


ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: United States Department of Agriculture USDA-ERRC Sustainable Biofuels and Co-products Research


ncbi_country: USA: Boston

ncbi_organism_name: Wolbachia endosymbiont of Drosophila mauritiana

ncbi_strain_identifiers: wMau

ncbi_submitter: New England Biolabs


ncbi_country: Australia: Clermont; QLD

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: Faeces


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Paracoccus pantotrophus J46

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Monash University


ncbi_country: Portugal

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidade Catolica Portuguesa


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Italy

ncbi_isolation_source: smoked salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: Ohio

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF15-49

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Wound

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_country: China: Hubei

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: USA: New York

ncbi_isolation_source: cystic fibrosis isolate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: JCVI


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_isolation_source: fermentation

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 181

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Pseudomonas sp. efr-133-TYG-5

ncbi_submitter: University of Chicago


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Desulfovibrio sp. UBA728


ncbi_organism_name: Actinomyces naeslundii


ncbi_assembly_name: IMG-taxon 2636416176 annotated assembly

ncbi_organism_name: Pseudomonas lini

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: City University of Hong Kong


ncbi_country: China

ncbi_isolation_source: blood

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cpo035

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: Lebanon

ncbi_isolation_source: Red wine

ncbi_organism_name: Oenococcus oeni IOEB_L40_4

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_country: Mexico: Bordo de Xochiaca; Nezahualcoyotl; Estado de Mexico

ncbi_isolation_source: Decomposed soft foam

ncbi_organism_name: Alicycliphilus denitrificans

ncbi_submitter: Facultad de Quimica, Universidad Nacional Autonoma de Mexico


ncbi_isolation_source: rotten kelp

ncbi_organism_name: Flavobacterium sp. UMI-01

ncbi_submitter: Hokkaido University


ncbi_organism_name: Candidatus Hydrogenedentales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;x__unclassified Candidatus Hydrogenedentales;s__Candidatus Hydrogenedentales bacterium


ncbi_country: India

ncbi_isolation_source: Wild gaur (Bos gaurus) dung

ncbi_organism_name: Lactococcus formosensis subsp. bovis

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_organism_name: Bifidobacteriaceae bacterium MCC02035

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: China: Nantong; Jiangsu province

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: thermophilic anaerobic digestion

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Italy: Apulia; Bari

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bari "Aldo Moro", Bari, Italy


ncbi_submitter: Graduate School of Life and Environmental Sciences, Osaka Prefecture University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Glaciecola sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_submitter: Aichi Prefectural Tobu Livestock Hygiene Service Center


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Shenyang Agricultural University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_submitter: Toho University


ncbi_country: China: Sichuan

ncbi_isolation_source: swine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Kineosporiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: China: Jiangsu Province

ncbi_isolation_source: surface water

ncbi_organism_name: Actomonas aquatica

ncbi_submitter: Hohai Univercity


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Streptomyces inusitatus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Spain: Galicia

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Facultad de Veterinaria, Universidad Complutense de Madrid


ncbi_isolation_source: lake water

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA:Alaska; Seward Peninsula

ncbi_isolation_source: root nodule

ncbi_organism_name: bacterium

ncbi_submitter: Next generation Ecosystem Experiment Arctic


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_country: China: Huangshaping Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Exiguobacterium aurantiacum

ncbi_submitter: Peking University Shenzhen Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium aurantiacum


ncbi_organism_name: Slackia isoflavoniconvertens


ncbi_assembly_name: Rumen uncultured genome hRUG881

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingomonas sp. T9W2

ncbi_submitter: Slippery Rock University


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__candidate division TM6 bacterium GW2011_GWF2_32_72


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Paraguay: Coronel Oviedo

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: China

ncbi_isolation_source: seedling

ncbi_organism_name: Catenovulum sp. 2E275

ncbi_submitter: Shandong University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Caulobacter soli

ncbi_submitter: Nanjing Forestry University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_country: Brazil: Sao Paulo; Santos

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Paenibacillus macerans NBRC 15307

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_assembly_name: Rumen uncultured genome RUG13033

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospira sp.


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: United Kingdom: Northern Ireland

ncbi_isolation_source: meat environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Northumbria University


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: South Korea: Buan-gun

ncbi_isolation_source: seawater

ncbi_organism_name: Aestuariispira ectoiniformans

ncbi_submitter: Korea Research Institute of bioscience and Biotechnology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Kribbella sp. NPDC056861

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_organism_name: Escherichia sp. MOD1-EC6099

ncbi_submitter: FDA/CFSAN


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_submitter: INRA


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_country: France: Lille

ncbi_isolation_source: trachea

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Scatocola faecigallinarum

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-388-F11

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Sweden

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: Pantoea agglomerans


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: South Korea: Han River

ncbi_organism_name: Chryseobacterium foetidum

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Spain: Santander

ncbi_organism_name: Corynebacterium urealyticum

ncbi_submitter: Federal University of Bahia


ncbi_country: Canada: Ontario

ncbi_isolation_source: intake water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Seattle

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_assembly_name: Salmonella enterica CVM N38229-SQ v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0943

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Human feces

ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: The University of Tokyo


ncbi_country: USA: AK

ncbi_isolation_source: Cloacae

ncbi_organism_name: Escherichia sp. MOD1-EC6147

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_submitter: Sichuan University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parasutterella sp.


ncbi_country: Peru: Cajamarca

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: freshwater MAG --- I3b_bin-317

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Verrucomicrobium sp.

ncbi_submitter: BILS


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium simulans

ncbi_strain_identifiers: ACRQU

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Ferrimonas sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_country: USA: South Elgin; Illinois

ncbi_isolation_source: Fox River water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Morganella morganii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: Panama: Bocas del Toro; Inner Solarte

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 7d patty soil

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Peking university


ncbi_organism_name: Congregibacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Streptococcus infantarius

ncbi_submitter: Fauclty of medecine and pharmacy


ncbi_organism_name: Eudoraea sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: China Jiliang University


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Streptomyces diastaticus


ncbi_assembly_name: freshwater MAG --- Day2-4_bin-173

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Indian Institute of Technology Roorkee


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. NPDC056949


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Kenya: Kajiado County

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Helmholtz Centre for Infection Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Brazil: BA

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: FIOCRUZ


ncbi_assembly_name: freshwater MAG --- Ja1_bin-1594

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: HeNan

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: throat swab

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_submitter: University of Manitoba


ncbi_country: USA: California; Middletown

ncbi_organism_name: Candidatus Roizmanbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;x__unclassified Candidatus Roizmanbacteria;s__Candidatus Roizmanbacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: Esthwaite Water

ncbi_isolation_source: Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water

ncbi_organism_name: Flavobacterium sp. BFFFF1

ncbi_submitter: CNRS-AMU


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: India: Assam

ncbi_isolation_source: hospital patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprobacillus sp.

ncbi_submitter: EMG


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Bodega Bay

ncbi_isolation_source: Seagrass sediment

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: UC Davis


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Russia: Chukotka Peninsula; Arctic region

ncbi_isolation_source: thermal spring

ncbi_organism_name: Arenimonas fontis

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Mesorhizobium sp. LSHC416B00

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: dripstand

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: NORHED grant


ncbi_country: Bulgaria

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: LR 95

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: China: Central China Fuwai Hospital of Zhengzhou University

ncbi_isolation_source: Urine from patient

ncbi_submitter: YangZhou university


ncbi_country: Samoa


ncbi_organism_name: Streptococcus suis YS14

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_country: Canada

ncbi_isolation_source: water

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas Tech University


ncbi_isolation_source: chicken

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Technical University of Denmark


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Qingdao

ncbi_organism_name: Marinomonas colpomeniae

ncbi_submitter: Shandong Normal University


ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudoalteromonas sp. BSi20652

ncbi_submitter: Shandong University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Helicobacter pylori SA214A

ncbi_submitter: MHH


ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus sp. IVB6181

ncbi_submitter: University of Bern


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWB1_57_6


ncbi_organism_name: Providencia stuartii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Bangladesh: Dhaka

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Cardiff University


ncbi_organism_name: Desulfomicrobium sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: India: Guwahati; Assam; North Guwahati College Souk; Abhoypur

ncbi_isolation_source: retail fish market

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Sphingomonas sp. ZT3P38

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NPDC001455

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Nanjing

ncbi_isolation_source: Laboratory-scale bioreactor

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: NanJing University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sp. GD03696

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Comamonadaceae bacterium UBA7244

ncbi_submitter: University of Queensland


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: PTC fluid

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yangjiang

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: South China Agricultural University


ncbi_country: China

ncbi_isolation_source: powdered infant formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Universidad Politecnica del Estado de Morelos


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: soil

ncbi_organism_name: Schinkia azotoformans MEV2011

ncbi_submitter: Aarhus University


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SRCAMB


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: food

ncbi_organism_name: Enterobacter chuandaensis

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: USA: New Hampshire

ncbi_isolation_source: stool

ncbi_submitter: University of New Hampshire


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Blattabacterium punctulatus

ncbi_strain_identifiers: CPUmp

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_organism_name: Puia sp.


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_40_53


ncbi_isolation_source: Hospital surface

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Syria: Tal Hadya

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_country: China: Nanchang; Poyang Lake

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Moritella sp. Urea-trap-13

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: USA: Michigan

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Tech


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_country: USA: Seattle

ncbi_isolation_source: sputum of cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Streptococcus oralis


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- MJ130702A_bin-428

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: BILS


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Denmark

ncbi_isolation_source: EQA test strain

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: China Conservation and Research Center for the Giant Panda


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: UIUC


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Methylibium petroleiphilum

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Dysosmobacter sp.


ncbi_organism_name: Novosphingobium sp.


ncbi_organism_name: Pseudomonas sp. DWRC2-2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Microbacterium sp. S308A+

ncbi_submitter: Shenzhen University


ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: forest soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolate: AOP35_03E_surf _bin _27

ncbi_organism_name: Ancrocorticia populi

ncbi_strain_identifiers: AOP35_03E_surf _bin _27

ncbi_submitter: Genoscope


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Enterococcus sp.

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_organism_name: Bacillales bacterium UBA7581

ncbi_submitter: University of Queensland


ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tongji University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Leptospiraceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Enterococcus faecalis RP2S-4

ncbi_submitter: The Genome Institute


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: marine metagenome


ncbi_country: USA: Beltsville; Maryland

ncbi_organism_name: Mesoplasma coleopterae

ncbi_strain_identifiers: BARC 786

ncbi_submitter: Universite de Sherbrooke


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bacteroidota bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Afipia sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Wenzhou medical university


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Third Institute of Oceanography


ncbi_isolation_source: Ear swab

ncbi_submitter: University of Bern


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Turicibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Rhodocyclaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: TN

ncbi_isolate: Cell 1/3

ncbi_isolation_source: subgingival plaque

ncbi_strain_identifiers: Cell 1;3;Cell 1/3

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella serpentiformis;x__Tannerella sp. oral taxon BU063 isolate Cell 1/3


ncbi_organism_name: Bacillus capparidis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacillus cereus group sp. BCN155

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN155


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University in St Louis


ncbi_country: USA

ncbi_isolation_source: clinical

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptococcus parasuis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Costa Rica: Guanacaste Conservation Area

ncbi_isolation_source: adult body

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 351

ncbi_submitter: SC


ncbi_assembly_name: Salmonella enterica CVM N48699 v1.0

ncbi_country: USA: LA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Russia: Rostov Region

ncbi_isolation_source: Ready-to-cook chicken cutlets

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Panama: Cocle

ncbi_isolation_source: root

ncbi_organism_name: Nostoc sp. PA-18-2419

ncbi_submitter: Universite laval


ncbi_organism_name: Ignavibacteriaceae bacterium


ncbi_isolate: KMIDBMKN

ncbi_organism_name: Candidatus Stammera capleta

ncbi_strain_identifiers: KMIDBMKN

ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: IMG-taxon 2634166345 annotated assembly

ncbi_organism_name: Microlunatus sagamiharensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: Rectum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_country: USA: NARMS

ncbi_isolation_source: chicken carcass rinsate

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: USDA-ARS-USNPRC-RRC


ncbi_assembly_name: Assemblage de novo

ncbi_country: France

ncbi_isolation_source: unpasteurized Camembert cheese

ncbi_organism_name: Lactiplantibacillus plantarum UCMA 3037

ncbi_strain_identifiers: UCMA 3037

ncbi_submitter: Universite de Caen Basse-Normandie


ncbi_country: Viet Nam: Dan Phong; Ha Noi

ncbi_isolation_source: soil from tomato plant

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: ENDOBICA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Arthrobacter sp. Leaf145

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: USA: Immokalee; FL

ncbi_isolation_source: hilar lymph node

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Peru: Lima

ncbi_isolation_source: liver

ncbi_submitter: Universidad Nacional Mayor de San Marcos

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: Rumen uncultured genome RUG14567

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides caccae


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: EMG


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolate: NECK SKIN

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: NECK SKIN;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: urine

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Australia

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Melbourne


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Alberta


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: United States Department of Agriculture


ncbi_isolation_source: caecum

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: BPTTE

ncbi_submitter: The University of Adelaide


ncbi_assembly_name: freshwater MAG --- Loc080925-6m_bin-0519

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_country: China: Zhejiang

ncbi_isolation_source: cervix

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: South Korea: Jeon-buk

ncbi_isolation_source: Flower of Chiness redbud

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: National Institute of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Clostridia bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P66P

ncbi_submitter: South China Agricultural University


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Methylotenera mobilis

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Bulgaria

ncbi_isolation_source: Black Sea sulfidic water

ncbi_organism_name: Lentimicrobium sp. S6

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mud volcano

ncbi_organism_name: Mycobacterium sp. SM1

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: tracheal aspirate

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Arcticibacter tournemirensis

ncbi_submitter: nanjing agricultural university


ncbi_organism_name: Clostridium ihumii

ncbi_submitter: China Conservation and Research Center for the Giant Panda


ncbi_submitter: SINTEF Industry


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Salinisphaera sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lentisphaerales bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Streptomyces sp. NBC_00150

ncbi_submitter: Technical University of Denmark


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Tennessee;Knoxville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Colorado State University


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Acetobacteraceae bacterium


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2720900

ncbi_submitter: IGS


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Endometrium

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chulalongkorn University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: TX

ncbi_isolation_source: canine feces

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Texas Tech University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_organism_name: uncultured Acinetobacter sp.


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Southern Denmark


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Netherlands

ncbi_strain_identifiers: STEC 931

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: China

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: jiangnan


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Barnesiella sp.


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Treponema sp.


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_isolate: AOP36_A1_surf _bin _16

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP36_A1_surf _bin _16

ncbi_submitter: Genoscope


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sulfurovum sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Azambacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;x__unclassified Candidatus Azambacteria;s__Candidatus Azambacteria bacterium


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: leg wound

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Canada: Alberta

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of Calgary


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Cryobacterium sp. RTC2.1

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_assembly_name: freshwater MAG --- YR_bin-1501

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Baise

ncbi_isolation_source: Patients with gastritis or gastric ulcer examined with a gastroscope at People s Hospital; Bama County

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: BGI


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner MongoliaAgricultural University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China:South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Saccharopolyspora erythraea

ncbi_strain_identifiers: SCSIO 07745

ncbi_submitter: CAS Key Laboratory of Tropical Marine Bio-resources and Ecology


ncbi_country: USA: Greene County; Ohio

ncbi_isolation_source: groundwater well

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium Greene0714_2


ncbi_isolation_source: Mariana Trench sediment

ncbi_organism_name: Pontibacter sp. E15-1

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: oral swab

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: King's College London


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Thailand: Narathiwat

ncbi_isolation_source: food

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Streptomyces sp. ISL-21

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_assembly_name: Rumen uncultured genome RUG11629

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Western Australia

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_country: USA

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_submitter: Lund University


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Seawater (1m depth)

ncbi_organism_name: Planktomarina temperata


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Mycobacteriales bacterium


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: India: Delhi

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Gulbarga University


ncbi_country: China: Hunan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Kingella oralis

ncbi_submitter: EMG


ncbi_country: New Zealand

ncbi_isolation_source: Infection swab

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Massey University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Gordonia caeni

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Escherichia coli O15:H18 str. K1516

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O15:H18;x__Escherichia coli O15:H18 str. K1516


ncbi_country: Czech Republic

ncbi_isolation_source: bodily cavity

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_country: China: Yunnan; Machang village

ncbi_organism_name: Yersinia pestis

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing , China


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Yunnan Province

ncbi_isolation_source: hot spring microbial mat

ncbi_organism_name: Thermus brevis

ncbi_strain_identifiers: SYSU G05001

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_isolation_source: field

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_strain_identifiers: ICMP 4165

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: Acidovorax delafieldii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolate: AOP5_DX2_coeur _bin _2

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: AOP5_DX2_coeur _bin _2

ncbi_submitter: Genoscope


ncbi_country: Netherlands

ncbi_isolation_source: Indian curry (sterilised soup in pouch)

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: University of Groningen


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Bacillus sp. FSL K6-1284

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-1284


ncbi_country: Australia: Brisbane; QLD; University of Queensland

ncbi_isolation_source: AOM-Mn bioreactor day 314

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Xinjiang

ncbi_isolation_source: sand

ncbi_organism_name: Mycetocola manganoxydans

ncbi_strain_identifiers: CCTCC AB209002

ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Aeromonas media

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Abe hydrothermal plume 200m

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterococcus innesii

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR