ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: Department of Medical Technology, Faculty of Health Science, Kumamoto Health Science University


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_level: Contig

ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: BGI Research


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Chryseobacterium sp. T20

ncbi_submitter: University of Tehran


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Italian National Institute of Health


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: environment

ncbi_organism_name: Lysobacteraceae bacterium NML93-0399

ncbi_submitter: National Microbiology Laboratory/ Public Health Agency of Canada


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus haemolyticus


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: Rumen uncultured genome RUG840

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Jiangsu

ncbi_isolation_source: secretion

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Streptomyces toxytricini

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus wangshanyuanii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8291

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_isolation_source: Faeces


ncbi_country: Thailand

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Caballeronia sp. LZ032

ncbi_submitter: University of Texas at Arlington


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Khabarovsk

ncbi_isolation_source: lake mud

ncbi_organism_name: Magnetospirillum fulvum MGU-K5

ncbi_submitter: Centre Bioengineering RAS


ncbi_country: USA: Eugene

ncbi_isolation_source: organic material

ncbi_organism_name: Cetobacterium sp. ZOR0034

ncbi_submitter: University of Oregon


ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Kyushu University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Helmholtz Centre for Infection Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: South Korea: Jeju island

ncbi_isolation_source: leaf

ncbi_organism_name: Pectobacterium jejuense

ncbi_refseq_category: reference genome

ncbi_submitter: Kyungpook National University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_country: China: The East China Sea

ncbi_isolation_source: Natural oxic surface sediment

ncbi_organism_name: Mesobacillus boroniphilus

ncbi_submitter: Ocean University of China


ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Caenarcanales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;c__Vampirovibriophyceae;o__Candidatus Caenarcanales;x__unclassified Candidatus Caenarcanales;s__Candidatus Caenarcanales bacterium


ncbi_country: Spain: Madrid

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: EvoTAR


ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Eubacteriales Family XIII. Incertae Sedis bacterium


ncbi_organism_name: Candidatus Roizmanbacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;x__unclassified Candidatus Roizmanbacteria;s__Candidatus Roizmanbacteria bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA

ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Peking Union Medical College Hospital


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Empedobacter sp.


ncbi_organism_name: Chthoniobacterales bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Australia: Newcastle

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_level: Chromosome

ncbi_country: Austria: Kremesberg 11

ncbi_isolation_source: rumen epithelial tissue

ncbi_organism_name: Campylobacter sp. CN_NE2

ncbi_strain_identifiers: Cn NE2

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Tenacibaculum sp.


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: The strain was isolated from blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aarhus University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Australia: Orpheus Island

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: Denmark: Odense

ncbi_isolation_source: nose swab

ncbi_submitter: Odense University Hospital


ncbi_country: Canada: Val-d Or

ncbi_isolation_source: surface-sterilized gnotobiotic actinorhizal nodule; gnotobiotic green alder inoculated with crushed alder nodule

ncbi_organism_name: Paenibacillus sp. Pae15

ncbi_submitter: Universite de Sherbrooke


ncbi_country: Spain: Asturias

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Microcoleus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Human

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: VRE 60

ncbi_submitter: Lebanese American University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Alicyclobacillus mali NBRC 102425

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Alicyclobacillaceae;g__Alicyclobacillus;s__Alicyclobacillus mali (ex Roth et al. 2021);x__Alicyclobacillus mali NBRC 102425

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W36570

ncbi_submitter: Broad Institute


ncbi_organism_name: Microcoleus sp. AT9_B5

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-3005

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Geodermatophilus sp. DSM 44513

ncbi_submitter: G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, PSCBR RAS


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Germany: Jena

ncbi_isolation_source: rectal swab neonate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jena University Hospital


ncbi_organism_name: Klebsiella sp. 127573

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: France

ncbi_isolation_source: baby blood culture

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: UMR9198, Universite Paris Saclay


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_strain_identifiers: Harbin 35

ncbi_submitter: ERIC (Enteropathogen Resource Integration Center)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis;x__Yersinia pestis subsp. pestis bv. Medievalis;x__Yersinia pestis biovar Medievalis str. Harbin 35


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Norway

ncbi_isolation_source: dairy

ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Shigella flexneri 6603-63

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: National Chung Cheng University


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Desulfofustis sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Geobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter radioresistens


ncbi_country: Australia: Monaro; NSW

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: bacterium

ncbi_submitter: GNS Science


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolate: SPRUCE 257

ncbi_organism_name: Polyangiaceae bacterium

ncbi_strain_identifiers: SPRUCE 257

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Paenibacillus tarimensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Enterococcus sp. DIV2389

ncbi_submitter: Broad Institute


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Sulfurimonas sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Akkermansia muciniphila


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- Umea2_bin-0830

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: FL

ncbi_isolation_source: feces calf (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Nonomuraea angiospora

ncbi_submitter: Oregon State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_country: South Korea

ncbi_isolation_source: Chicken meat

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Chongqing Medical University


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: New Zealand

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: New Zealand Institute for Plant & Food research


ncbi_organism_name: Actinomyces sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__candidate division TM6 bacterium GW2011_GWF2_37_49


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: sputum

ncbi_submitter: University of Trento


ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Laboratory for Foodborne Zoonoses


ncbi_organism_name: Streptococcus agalactiae CCUG 37742

ncbi_submitter: The J. Craig Venter Institute


ncbi_submitter: Cepheid


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Rhodococcus oxybenzonivorans

ncbi_strain_identifiers: IEGM 30

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Thiocapsa sp. UBA6158

ncbi_submitter: University of Queensland


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: Blood

ncbi_organism_name: Clostridium haemolyticum

ncbi_submitter: King Faisal Specialist Hospital & Research Centre


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Paenibacillus polysaccharolyticus

ncbi_strain_identifiers: MER 26

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Kansas State University


ncbi_country: USA: LA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Morocco

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcaceae bacterium AM104-57

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Institut de la recherche véterinaire de Tunisie


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Chryseobacterium sp. CCNWLW53

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: Soybean paste (Chonggugjang)

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Xiamen University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F16077

ncbi_submitter: Broad Institute


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Los Angeles

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: JCVI


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: [Eubacterium] hominis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: India: Andaman islands

ncbi_isolation_source: Rhizospheric water of Mangrove Trees

ncbi_organism_name: Atopomonas hussainii

ncbi_submitter: Indian Institute of Science Education and Research, Bhopal


ncbi_isolation_source: catfish

ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Mississippi State University


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Bacillus cereus VD184

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus VD184


ncbi_isolation_source: Not known

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Limosilactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: North West University


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: uncultured Candidatus Planktophila sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__environmental samples;s__uncultured Candidatus Planktophila sp.


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Streptomyces xiamenensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Bacillus cereus group sp. BceL080

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL080


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Chung-Ang university


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 20 to 25cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Deinococcaceae bacterium


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_organism_name: Streptomyces coelicoflavus


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: South Korea: Jeonnam

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Korea Centers for Disease Control and Prevention


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Hangzhou

ncbi_isolation_source: manure

ncbi_organism_name: Thermobispora sp.

ncbi_submitter: zhejiang university


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Japan: Saga

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: ANSES


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Dickeya solani

ncbi_submitter: CNRS - UPR2355


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Bacillales bacterium UBA1744

ncbi_submitter: University of Queensland


ncbi_country: India: Karnataka; Gulbarga; Kurgunta

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


gtdb_type_species_of_genus: t

ncbi_country: South Korea: Jeju

ncbi_isolation_source: stalactiti in a lava cave

ncbi_organism_name: Antrihabitans stalactiti

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: Australia

ncbi_isolation_source: Troups Creek Wetland

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Monash University


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Desulfuromonadales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: USA: Tennessee

ncbi_isolation_source: biofilm of a cooling tower

ncbi_organism_name: Candidatus Berkiella cookevillensis

ncbi_submitter: Middle Tennessee State University

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Berkiellales;f__Candidatus Berkiellaceae;g__Candidatus Berkiella;s__Candidatus Berkiella cookevillensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Berkiellales;f__Candidatus Berkiellaceae;g__Candidatus Berkiella;s__Candidatus Berkiella cookevillensis


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Yonsei University College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Gemella sanguinis

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: gabuh7007 v01

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii UH7007

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Sea snake

ncbi_organism_name: Halomonas sp. S2151

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Minneapolis; Minnesota

ncbi_isolation_source: environmental

ncbi_organism_name: Mycolicibacterium septicum

ncbi_submitter: University of Minnesota


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Algeria: Ouargla

ncbi_isolation_source: Nose

ncbi_submitter: Universiteit Gent


ncbi_country: Bolivia: Aranjuez; La Paz

ncbi_isolation_source: Choqueyapu River

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Gothenburg


ncbi_assembly_name: Draft genome of P. immobile strain E (DSM 1986)

ncbi_organism_name: Phenylobacterium immobile (ATCC 35973)

ncbi_strain_identifiers: (strain E)

ncbi_submitter: Institute of Technical Biochemistry


ncbi_organism_name: Ohtaekwangia sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum ferrooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudohongiella sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Steroidobacter sp.

ncbi_submitter: TU Wien


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium ferriphilum


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: nankai university


ncbi_country: Haiti: Cholera Treatment Center; Gressier

ncbi_isolation_source: Stool; Clinical

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Anaerolinea thermophila

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Cytophagales bacterium EPR-FJ-38

ncbi_submitter: Second Institute of Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;x__unclassified Cytophagales;s__Cytophagales bacterium EPR-FJ-38


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Anhui University of Science and Technology Affiliated Fengxian hospital ,Shanghai ,China


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Hangzhou

ncbi_isolation_source: Fester

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College


ncbi_country: Australia: Geraldton

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: The University of Queensland


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-0285

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Texas

ncbi_isolation_source: Oral

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: The University of Texas at Dallas


ncbi_submitter: North-West University


ncbi_organism_name: Borreliella garinii

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_assembly_name: Rumen uncultured genome RUG10813

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: New Zealand: Hikurangi Margin

ncbi_isolation_source: Glendhu Ridge methane seep

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: GNS Science


ncbi_country: USA: IL

ncbi_isolation_source: porcine

ncbi_strain_identifiers: CVM 818

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis;x__Salmonella enterica subsp. enterica serovar Infantis str. CVM 818


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22812;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA: NY; New York City

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Desulfomicrobiaceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Amycolatopsis sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella sp. 2HUCk22cef

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Paenibacillus vulneris

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_submitter: ICMR-Vector Control Research Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar israelensis


ncbi_submitter: Institute of Antibiotics


ncbi_organism_name: Kitasatospora purpeofusca


ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Salmonella sp. 6309

ncbi_submitter: Zhejiang university


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- YR2_bin-1570

ncbi_submitter: BILS


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Cupriavidus sp. 30B13

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: cecum

ncbi_submitter: MIT


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Urine

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: feces

ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Microsaccharimonas sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Microsaccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Microsaccharimonas;x__unclassified Candidatus Microsaccharimonas;s__Candidatus Microsaccharimonas sp.


ncbi_country: Russia: Moscow

ncbi_isolation_source: vent. liquor

ncbi_submitter: SRCAMB


ncbi_country: China

ncbi_isolation_source: dialysis soution

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Variovorax sp. Root473

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus minor

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Malaysia: Perak

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Enterobacteriaceae bacterium 4M9

ncbi_submitter: Universiti Sains Malaysia


ncbi_country: Germany

ncbi_organism_name: Orlajensenia flava

ncbi_submitter: Yunnan University


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_assembly_name: Rumen uncultured genome RUG640

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Linn County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1F7

ncbi_submitter: Oregon State University


ncbi_country: Canada: Ontario

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Singulisphaera sp. GP187

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Missouri

ncbi_isolation_source: blood

ncbi_organism_name: Haematobacter missouriensis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Guangzhou

ncbi_isolation_source: anal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Hangzhou

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Brazil

ncbi_isolation_source: pecked egg yolk

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: Research Institute for Systems Biology and Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_organism_name: Micropepsaceae bacterium


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Alteromonas sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli O25b:H4

ncbi_submitter: Public Health Agency of Sweden


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_isolation_source: wastewater from WWTP

ncbi_submitter: Shandong University


ncbi_country: Thailand: Chachoengsao

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Yale University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella sp. SORGH_AS_1025

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Washington

ncbi_isolation_source: enrichment culture inoculated with soil

ncbi_organism_name: Pseudomonas sp. Sample_11

ncbi_submitter: Washington State University


ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: University of Bristol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Russia: Cheboksary

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: South China Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: South Korea: Jeju

ncbi_isolation_source: tree sap

ncbi_organism_name: Rahnella laticis

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: Norway: Spitsbergen

ncbi_isolation_source: sediment of soil; loam layer

ncbi_organism_name: Rhodopseudomonas sp. P2A-2r

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Ruminococcaceae bacterium UBA3710

ncbi_submitter: University of Queensland


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: Hong Kong

ncbi_submitter: City University of Hong Kong


ncbi_country: Czech Republic: Jachymov (Joachimstahl)

ncbi_isolation_source: mineral water

ncbi_organism_name: Mesorhizobium sp. J428

ncbi_submitter: University of Chemistry and Technology


ncbi_country: China: Anhui

ncbi_isolation_source: spleen

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou university


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxic seawater

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: SRCAMB


ncbi_country: United Kingdom:England


ncbi_organism_name: Acidisphaera rubrifaciens HS-AP3

ncbi_submitter: Kinki University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: shaoxing people's hospital


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Washington


ncbi_organism_name: Micromonospora sp. NPDC002717

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater from Yellow Sea

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Tsinghua University


ncbi_submitter: Kansas State University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Dialister invisus


ncbi_organism_name: Marinomonas sp. PE14-40

ncbi_submitter: University of the Western Cape


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Ornithocaccomicrobium;s__Candidatus Ornithocaccomicrobium faecavium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Cancer Hospital Chinese Academy of Medical Sciences, Shenzhen Center


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: USA

ncbi_isolation_source: cystic fibrosis sputum

ncbi_organism_name: Achromobacter sp. 2789STDY5608621

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: nankai university


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Italy: Tuscany; Siena

ncbi_submitter: University of Siena


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Undibacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Portugal: Algarve

ncbi_isolation_source: Sea cave

ncbi_organism_name: Vibrio sp. 1CM24A

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_country: Mexico

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_organism_name: Enterococcus sp. C22

ncbi_submitter: Northwest A & F University


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Klebsiella sp. JB_Kp013

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- Loc090907-8-6m_bin-519

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: GNS Science


ncbi_organism_name: Corynebacterium matruchotii

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: anaerobic bioreactor fed on waste from potato starch factory

ncbi_organism_name: Clostridium acetireducens DSM 10703

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: Spain

ncbi_isolation_source: avocado rhizosphere

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Indstitute of Fundamental Medicine and Biology, Kazan Federal University


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Clemson University


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Streptomyces parvulus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Canada: Alberta

ncbi_isolation_source: Feedlot catch basin

ncbi_organism_name: Escherichia coli

ncbi_submitter: Government of Alberta


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Porphyromonas levii

ncbi_submitter: University of Calgary


ncbi_country: USA: Tennessee

ncbi_isolation_source: Rectal

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_submitter: University of Copenhagen


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Peradeniya


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_organism_name: Salipiger abyssi

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Las Cruces

ncbi_isolation_source: mosquito larval gut

ncbi_organism_name: Serratia sp. Ag2

ncbi_submitter: New Mexico State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. Ag2


ncbi_country: Brazil

ncbi_isolation_source: soil

ncbi_organism_name: Rhodopirellula baltica

ncbi_strain_identifiers: BR-MGV

ncbi_submitter: University of Sao Paulo


ncbi_country: South Africa

ncbi_organism_name: Mycolicibacterium elephantis

ncbi_submitter: JCVI


ncbi_organism_name: Nitrosotalea sp.

ncbi_submitter: Zhejiang University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Tepidisphaerales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_country: China

ncbi_isolation_source: Blood culture

ncbi_submitter: Ruijin Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Serratia marcescens

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: USA

ncbi_isolation_source: Chicken Rinse

ncbi_submitter: Agricultural Research Service, United States Department of Agriculture

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Blockley


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Weihai

ncbi_submitter: Shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter;s__Maribacter algarum (ex Zhang et al. 2020)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: sandy soil

ncbi_strain_identifiers: BGSC 4BX1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar pingluonsis


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Zhejiang

ncbi_isolation_source: Shellfish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD17890

ncbi_submitter: Broad Institute


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Oceanobacillus kimchii

ncbi_submitter: Centro Integral de Microscopia Electronica (CIME - UNT - CONICET)


ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Division of Infection Control and Prevention, Medical Mycology Research Center, Chiba University


ncbi_country: South Korea:Sunchang County

ncbi_isolation_source: Korean soybean paste

ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: SCDB 14

ncbi_submitter: Chonbuk National University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Blautia producta

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Chicago

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Staphylococcus ureilyticus

ncbi_submitter: Universiti Malaysia Kelantan


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: University of Calgary


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom

ncbi_organism_name: Actinotignum urinale DSM 15805

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Hasllibacter sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Vicingaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: India

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Silanimonas sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Acutalibacter ornithocaccae


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Helcococcus kunzii

ncbi_submitter: Nimes University Hospital


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- Erken-D5_bin-0910

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: bioreactor

ncbi_organism_name: Firmicutes bacterium UBA5832

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5832


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_submitter: Shandong University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: Lithuania

ncbi_isolation_source: fecal sample

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: Invasive

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Oligoflexia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Beijing Genome Institute


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: N


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: INRA-MIG


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Candidatus Onthomonas sp.

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Onthomonas;x__unclassified Candidatus Onthomonas;s__Candidatus Onthomonas sp.


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: West Virginia

ncbi_organism_name: Moraxella bovis

ncbi_submitter: USDA/ARS


ncbi_country: USA: Boston; MA

ncbi_isolation_source: oral

ncbi_organism_name: Staphylococcus aureus M0552

ncbi_submitter: Broad Institute


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: blood

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Lactobacillus crispatus CTV-05


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_organism_name: Salipiger bermudensis


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Zipacnadia bacterium

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;c__Candidatus Zipacnadia;x__unclassified Candidatus Zipacnadia;s__Candidatus Zipacnadia bacterium


ncbi_isolation_source: Expectoration

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: CA

ncbi_isolation_source: small intestine (Equus ferus caballus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWC2_48_17


ncbi_organism_name: uncultured Hymenobacter sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium C1904

ncbi_submitter: Washington University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Duodenibacillus sp.


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human skin

ncbi_organism_name: Levyella massiliensis

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: Bronchoalveolar Lavage (BAL)

ncbi_submitter: marathon study consortium


ncbi_assembly_name: VAP LM33

ncbi_isolate: patient

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Pseudodesulfovibrio profundus

ncbi_submitter: Genoscope CEA


ncbi_organism_name: Alistipes communis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Salmonella enterica CVM 43770 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: USA: Columbus; Ohio

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: J.Craig Venter Institute


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: rat gut

ncbi_organism_name: Akkermansia sp. UBA7090

ncbi_submitter: University of Queensland


ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus luteus

ncbi_submitter: Beijing Institute of Technology


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: Pacific Ocean: Tonga; Lau Basin; ABE

ncbi_isolation_source: gill tissue

ncbi_submitter: University of California Santa Cruz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thiodubiliella;s__Candidatus Thiodubiliella endoseptemdiera


ncbi_country: China: Chengdu

ncbi_isolation_source: sludge of a sewage pipeline

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Xihua University


ncbi_organism_name: Escherichia coli 1A

ncbi_submitter: University Medical Center Utrecht


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Lachnoclostridium sp. UBA1434


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_isolation_source: drainage

ncbi_organism_name: Tessaracoccus flavus

ncbi_submitter: Kyung Hee University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Lactobacillus jensenii IM59

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG12920

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: West China hospital of Sichuan university


ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus taiwanensis


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Houston


ncbi_organism_name: uncultured Devosia sp.


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: Turkey

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-0706

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS


ncbi_assembly_name: IMG-taxon 2675903215 annotated assembly

ncbi_organism_name: Ulvibacter litoralis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: Yale University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Lactobacillus hominis


ncbi_country: USA: NY

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_strain_identifiers: USDA 154

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Guangzhou

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus mucilaginosus

ncbi_submitter: Guangdong Academy of Agricultural Sciences


ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Streptomyces sp. NPDC057433

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Heilongjiang Bayi Agricultural University


ncbi_country: Thailand

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Brevibacillus borstelensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Xanthobacter flavus

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Caulobacter sp. UNC279MFTsu5.1

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Gardnerella sp. KA01001

ncbi_submitter: Fred Hutch


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Myroides sp. DW712

ncbi_submitter: Sanya Peoples Hospital


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: uncultured Sangeribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phocaeicola dorei


ncbi_assembly_name: freshwater MAG --- MJ-2014-D7_bin-055

ncbi_submitter: BILS


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: IMG-taxon 2695420928 annotated assembly

ncbi_organism_name: Loktanella atrilutea

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Norway: Bergen

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Hong Kong

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Malaysia

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: rat gut

ncbi_organism_name: Ruminococcaceae bacterium UBA7217

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Coriobacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EMBL-EBI


ncbi_isolate: Clostridium neonatale C38

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale C38

ncbi_submitter: universite paris cite


ncbi_country: USA: Ithaca

ncbi_isolation_source: cows with mastitis at dairy farm

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: UNICAMP


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter brantae

ncbi_submitter: MIT


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Pseudarthrobacter sulfonivorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Stackebrandtia sp.

ncbi_submitter: Monash University


ncbi_country: China: Jiangsu

ncbi_isolation_source: liver

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bullifex porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Tunisia

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: ANSES


ncbi_country: Chile

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Concepcion


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: burned soil

ncbi_organism_name: Variovorax sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Rhizobium aethiopicum

ncbi_strain_identifiers: SEMIA 470


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine