ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; P+N amendment

ncbi_organism_name: Cyanobium sp. D14.bin.5

ncbi_submitter: University of Montana


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: South Africa: Northern Cape

ncbi_genome_representation: full

ncbi_organism_name: Priestia endophytica

ncbi_submitter: Agricultural Research Council


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_level: Contig

ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: University of Pittsburgh


ncbi_country: Italy: PA Bolzano

ncbi_isolation_source: tracheostoma

ncbi_organism_name: Escherichia coli

ncbi_submitter: Azienda Sanitaria dell'Alto Adige


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: mother doughs of rye flour

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Centro de Investigaciones Biologicas Margarita Salas


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01966

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acinetobacter amyesii

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


gtdb_type_species_of_genus: t

ncbi_organism_name: Samsonia erythrinae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Pseudidiomarina sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Marinomonas sp.


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Desulfobacterales bacterium


ncbi_organism_name: Microbacterium sp. NPDC077663

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- Ja1-D2_bin-2129

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Desulfovibrio fairfieldensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CAU


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Cellvibrionales bacterium UBA7361

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: USA: Tennessee

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Vanderbilt University Medical Center


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-a_bin-059


ncbi_country: Belarus: Brest

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_organism_name: Geomonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Italy: Sardinia

ncbi_isolation_source: milk from clinical mastitis-infected mammaries

ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Monash University


ncbi_country: Ireland: Cork

ncbi_organism_name: Blautia obeum

ncbi_submitter: University College Cork


ncbi_isolation_source: swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_submitter: Odense University Hospital


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enterobacteriaceae bacterium UBA7460


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: South Korea

ncbi_isolation_source: surface area of a building with less than 200 occupants

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Institut Pasteur Korea


ncbi_organism_name: Pedobacter sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Bronchial aspirate of a 53-year old patient

ncbi_organism_name: Nocardia ninae NBRC 108245

ncbi_refseq_category: reference genome

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Nocardia;s__Nocardia ninae;x__Nocardia ninae NBRC 108245


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Sheuella sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: United Kingdom

ncbi_isolation_source: coastal sea water

ncbi_organism_name: Nonlabens xylanidelens

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_country: India: Punjab

ncbi_isolation_source: Rice seed

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Jinhua

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Phaeobacter italicus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_country: China: Gansu

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_organism_name: Methylotenera sp.


ncbi_country: United Kingdom: Bawburgh

ncbi_isolation_source: grassland soil

ncbi_organism_name: Methylobacillus sp. MM3

ncbi_submitter: MicrobesNG


ncbi_isolation_source: rhizosphere soil culture M59

ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_organism_name: Paucimonas sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: China: Qinghai

ncbi_isolation_source: river bed soil

ncbi_organism_name: Paracoccus sp. MC1862

ncbi_submitter: National Institute for Communicable Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. MC1862


ncbi_country: China: Daqing

ncbi_isolation_source: saline-alkali soil

ncbi_organism_name: Nucisporomicrobium flavum

ncbi_submitter: School of life science


ncbi_organism_name: Mucisphaera sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: University of Chicago


ncbi_country: Italy

ncbi_isolation_source: Natural spring water

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:356

ncbi_submitter: DTU


ncbi_organism_name: Clostridium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_assembly_level: Chromosome

ncbi_isolation_source: MBI600 commercial crop protection product

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: BASF SE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_country: Nigeria

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Max Rubner-Institut


ncbi_strain_identifiers: NCIB 3610

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis;x__Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10


ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_strain_identifiers: KCTC 2357

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: San Francisco; California

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of California San Francisco


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: EBI


ncbi_country: Mexico

ncbi_isolation_source: river water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: USA: Colorado

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: USA: WA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Rhodoglobus sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: University of Southern California


ncbi_country: France

ncbi_isolation_source: bacterial strain isolated from fresh salmon

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: Ifremer


ncbi_organism_name: Ottowia sp.


ncbi_country: Japan

ncbi_organism_name: Erysipelotrichaceae bacterium GAM147

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Umezawaea sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Leptolyngbyaceae cyanobacterium CSU_1_4

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: ProBone


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolate: SPRUCE 20

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 20

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Ilumatobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: uncultured Lawsonibacter sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Stakelama sp.


ncbi_organism_name: Basfia succiniciproducens

ncbi_submitter: University of Bern


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Lund University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolate: AOP35_02H_surf _bin _14

ncbi_organism_name: Sphingobacterium sp.

ncbi_strain_identifiers: AOP35_02H_surf _bin _14

ncbi_submitter: Genoscope


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_organism_name: uncultured Nocardioides sp.


ncbi_organism_name: Waltera sp.


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Anhui; Tongling

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacillus cytotoxicus

ncbi_strain_identifiers: TIAC 5173

ncbi_submitter: Ghent University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-42

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_strain_identifiers: new MAG-42

ncbi_submitter: Micoorganism


ncbi_organism_name: Xanthomonas sp. WHRI 8391

ncbi_strain_identifiers: WHRI 8391

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Algicola sagamiensis DSM 14643

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Paraguay

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 1415

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: CIM:MAG 1415

ncbi_submitter: Mayo Clinic


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Malaya


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Palacky University Olomouc


ncbi_country: Hong Kong

ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriaceae bacterium UBA5544

ncbi_submitter: University of Queensland


ncbi_country: Spain: Seville

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Virgen Macarena


ncbi_isolation_source: gut content

ncbi_organism_name: Odoribacter lunatus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Guatemala

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Mageeibacillus sp. UBA6980


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Israel

ncbi_isolation_source: See Cohan et al. Evolution; 1991

ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: Weizmann institute for Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Amazon

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Sao Paulo


ncbi_country: Russia: Samara

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China

ncbi_isolation_source: Sludge of a caproate-producing reactor

ncbi_organism_name: Ruminococcaceae bacterium CPB6

ncbi_submitter: Chengdu Institute of Biology


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Aminobacter ciceronei

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG13156

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus australis

ncbi_submitter: SC


ncbi_country: China: Zhanjiang coastal

ncbi_isolation_source: coastal sediment

ncbi_organism_name: Isoptericola sp. 178

ncbi_strain_identifiers: SYSU T00178

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Helicobacter typhlonius


ncbi_country: Peru

ncbi_isolation_source: xylem

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: UC Davis


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: USA

ncbi_organism_name: Escherichia coli PA40

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: China: Sichuan; Pingwu

ncbi_organism_name: Gilliamella sp. Pas-s95

ncbi_submitter: China Agriculture University


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_submitter: University of Wisconsin - Madison


ncbi_assembly_name: Campylobacter coli CVM N1636 v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: CVM N1636

ncbi_submitter: FDA


ncbi_assembly_name: freshwater MAG --- A3_bin-515

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_assembly_name: Rumen uncultured genome RUG11055

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276


ncbi_country: Spain: Santander

ncbi_isolation_source: Cabrales cheese

ncbi_organism_name: Tetragenococcus koreensis

ncbi_submitter: Institute of Biomedicine and Biotechnology of Cantabria (IBBTEC), Intergenomics group


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_country: USA: Washington

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Newport

ncbi_submitter: Cornell University


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: Vermiphilus pyriformis

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;g__Vermiphilus;s__Vermiphilus pyriformis


ncbi_organism_name: Desulfosarcinaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Thermotoga maritima MSB8

ncbi_submitter: TIGR


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;o__Mycoplasmoidales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma urealyticum;x__Ureaplasma urealyticum serovar 4;x__Ureaplasma urealyticum serovar 4 str. ATCC 27816


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_assembly_name: B.cereus WGS Assembly II

ncbi_isolation_source: tracheobronchial aspiration

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_country: USA: Alabama

ncbi_isolation_source: top soil

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Buchnera aphidicola (Cavariella theobaldi)

ncbi_submitter: Centre for Microbiology and Environmental Systems Science


ncbi_organism_name: Campylobacter concisus UNSW2

ncbi_submitter: The University of New South Wales


ncbi_country: USA: Baltimore; MD

ncbi_isolation_source: clinical

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: groundwater

ncbi_organism_name: Afipia sp.

ncbi_submitter: University of Calgary


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Selenomonadales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Spirosoma fluviale

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: Bangladesh

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: icddrb


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0063

ncbi_submitter: Broad Institute


ncbi_country: USA: Stanford campus; Stanford; California

ncbi_isolation_source: mouth of a honey bee

ncbi_organism_name: Rosenbergiella nectarea subsp. apis

ncbi_submitter: Complutense University of Madrid


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterocloster lavalensis

ncbi_submitter: University of Chicago


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Korea

ncbi_isolation_source: pine litter

ncbi_organism_name: Paenibacillus pinistramenti

ncbi_submitter: Mokwon University, Korea


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium binae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Galway


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Salmonella sp. SJTUF15577

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Ventrimonas sp.


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: Bacillus cereus group sp. BceL241

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL241


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Devosia sp.

ncbi_submitter: Xiamen University


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp1 AA133

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp1 AA133

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Trueperaceae bacterium


ncbi_organism_name: Pseudomonas syringae pv. aptata

ncbi_submitter: University of Belgrade, Faculty of Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aptata


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Universidad de Leon


ncbi_submitter: NCTR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Senegalimassilia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_country: France: Marseille

ncbi_isolation_source: Fecal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IHU Mediterranee Infection


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_country: Japan

ncbi_isolation_source: Brain-Heart-Infusion

ncbi_submitter: Department of Infectious Diseases, National Center for Global Health and Medicine


ncbi_organism_name: Pedobacter superstes

ncbi_submitter: Hankyong National University


ncbi_organism_name: Xanthomonas citri pv. punicae

ncbi_submitter: Central University of Kerala

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. punicae


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 63049

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Oak Ridge; Field Research Center

ncbi_isolation_source: groundwater from well GW460

ncbi_organism_name: Janthinobacterium sp. GW460W

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Tanzania

ncbi_isolation_source: nasal swabs from HIV infected patient

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Bergen


ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__unclassified Streptococcus;s__Streptococcus sp. oral taxon 056;x__Streptococcus sp. oral taxon 056 str. F0418


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil:Rio Grande do Sul

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: Sulfitobacter sediminis

ncbi_submitter: Sungkyunkwan University


ncbi_country: France: Dijon

ncbi_submitter: INSERM


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Clostridium chromiireducens

ncbi_submitter: University of Toronto


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Monash University


ncbi_organism_name: Fulvivirga sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: South Korea

ncbi_isolation_source: Ganjang(korea Soy sauce)

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_assembly_name: JGI assembly

ncbi_organism_name: Candidatus Kryptonium thompsonii

ncbi_submitter: DOE - Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Kryptoniota;c__;o__;f__;g__Candidatus Kryptonium;s__Candidatus Kryptonium thompsonii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;g__Candidatus Kryptonium;s__Candidatus Kryptonium thompsonii


ncbi_submitter: KU Leuven


ncbi_country: China

ncbi_isolation_source: swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Honduras

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_organism_name: Vreelandella titanicae BH1

ncbi_submitter: University of Sevilla


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_organism_name: Trichloromonas sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: South Africa

ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Burkholderia anthinoferrum

ncbi_strain_identifiers: XXVI

ncbi_submitter: INSTITUTO TECNOLOGICO DE SONORA


ncbi_organism_name: Mycoplasmopsis cynos

ncbi_strain_identifiers: Rosendal

ncbi_submitter: Cornell University


ncbi_organism_name: Paenibacillus xylaniclasticus

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Spain: Valencia

ncbi_isolation_source: Biofilm clogging water pumps in ice machines

ncbi_organism_name: Mycobacterium gordonae

ncbi_submitter: Darwin Bioprospecting Excellence


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: Fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: IHU Mediterranee Infection


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Hallerella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 201

ncbi_organism_name: Staphylococcus arlettae

ncbi_strain_identifiers: SNUC 3447

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: CLUE-TERRA


ncbi_submitter: University of Bern


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Pseudomonas sp. UBA3550

ncbi_submitter: University of Queensland


ncbi_isolation_source: Human feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shenzhen Center for Disease Control and Prevention


ncbi_country: France

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_organism_name: Bifidobacterium breve


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: SC


ncbi_organism_name: Paraburkholderia dipogonis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Flavobacterium piscis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Anaerofustis sp. NSJ-163

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Ralstonia sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: USA: Luria broth; BD

ncbi_isolation_source: LB (Luria broth; BD; USA)

ncbi_organism_name: Pseudomonas parafulva

ncbi_submitter: China National Rice Research Institute


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: MRSN BI Team


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Bacillus sp. S25(2024)

ncbi_submitter: Quaid-i-Azam University Islamabad Pakistan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. S25(2024)


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii TG20546

ncbi_submitter: Translational Genomics Research Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_country: China

ncbi_isolation_source: Out-of-house environment

ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Newport

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: bacterial strain isolated from fresh salmon

ncbi_organism_name: Serratia fonticola

ncbi_submitter: Ifremer


ncbi_organism_name: Brevundimonas aurantiaca

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 242

ncbi_submitter: SC


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: University of Stirling


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Reyranellaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Candidatus Gemmiger avistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;s__Candidatus Gemmiger avistercoris


ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__environmental samples;s__uncultured candidatus Brocadiaceae bacterium


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: China: Tengchong; Zimeiquan hot spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: [Ruminococcus] torques


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Calgary


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Pseudoflavonifractor sp.

ncbi_submitter: EMG


ncbi_country: Arctic Ocean: Southern Knipovich Ridge

ncbi_isolation_source: marine sediment core GS10_PC15; 163 cmbsf

ncbi_organism_name: Candidatus Anoxychlamydiales bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Candidatus Anoxychlamydiales;x__unclassified Candidatus Anoxychlamydiales;s__Candidatus Anoxychlamydiales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sediminibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Pooled sediment sample collected from floor of poultry farm

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: The REHAB Consortium


ncbi_country: Brazil

ncbi_isolation_source: chicken carcass

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Enterococcus sp. C40

ncbi_submitter: Northwest A & F University


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AQ

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_organism_name: Leifsonia sp. 109

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-1161

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Axel Heiberg Island

ncbi_isolation_source: Ice-wedge polygon

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: Universite Laval


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_submitter: University of Massachusetts Amherst


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Helicobacter sp.


ncbi_country: India: New Delhi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Sudan

ncbi_isolation_source: lung

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capripneumoniae


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira kirschneri;x__Leptospira kirschneri serovar Grippotyphosa;x__Leptospira kirschneri serovar Grippotyphosa str. UT130


ncbi_country: China: Nanchang

ncbi_isolation_source: throat swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University Health Science Center


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Contendobacter sp.

ncbi_submitter: Activated sludge

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Contendibacter;x__unclassified Candidatus Contendobacter;s__Candidatus Contendobacter sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Sweden

ncbi_isolation_source: punctuat

ncbi_organism_name: Mycobacterium tuberculosis BTB11-133

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli B7-2

ncbi_submitter: IGS


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_country: Italy: Ancona

ncbi_isolation_source: bronchoalveolar lavage (BAL)

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universita Politecnica delle Marche


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil: Rio de Janeiro City

ncbi_isolation_source: nose secretion from patient with nose colonization

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LNCC


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Balneola sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacteroidales bacterium UBA3916

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3916


ncbi_country: Germany: Floodplain area  Unteres Odertal  watercourse  Strom

ncbi_isolation_source: floodplain area

ncbi_organism_name: Ideonella sp. A 288

ncbi_submitter: Eisenbakterien Odertal


ncbi_organism_name: Caldicoprobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Corynebacterium freiburgense

ncbi_submitter: EMG


ncbi_country: Argentina

ncbi_organism_name: Escherichia coli

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: hospital surface

ncbi_submitter: Translational Genomics Research Institute


ncbi_organism_name: Stenotrophomonas sp.


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 407

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: SNUC 5996

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_submitter: University of Galway


ncbi_isolation_source: human stool

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Italy

ncbi_isolation_source: freshwater river

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 86770-7

ncbi_submitter: Broad Institute


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: Russian Research Antiplague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerobutyricum hallii


ncbi_country: Ghana

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: China: Fujian

ncbi_isolation_source: Dead waterfowl

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- Loc080925-4-5m_bin-0434

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Deinococcus ficus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Hong Kong: Pokfulam

ncbi_isolation_source: Soil/drain sediment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Hawaii

ncbi_isolation_source: Lichen

ncbi_organism_name: Amycolatopsis sp. CA-128772

ncbi_submitter: Fundacion MEDINA


ncbi_isolate: SPRUCE 358

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: SPRUCE 358

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Methylocystis sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Puyang Oil Field General Hospital


ncbi_organism_name: Thermacetogeniaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Hospital of Volos

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: AOP34_CS2_surf _bin _20

ncbi_organism_name: Canibacter sp.

ncbi_strain_identifiers: AOP34_CS2_surf _bin _20

ncbi_submitter: Genoscope


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Serratia sp. CY40230

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY40230


ncbi_organism_name: Phycisphaerales bacterium


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Korean Collection for Type Culture, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: POE

ncbi_isolation_source: Chicken leg Quarter

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CAU


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Saprospiraceae bacterium UBA1994

ncbi_submitter: University of Queensland


ncbi_country: China: Weifang

ncbi_isolation_source: sick chicken lung

ncbi_submitter: University College London (UCL)


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada: near Kenora; Ontario; Lake 227; IISD-Experimental Lakes Area

ncbi_isolation_source: Ca. Chlorohelix allophototropha enrichment; subculture 15; a non-axenic enrichment culture of water from the upper anoxic zone (3.875 m depth) of a Boreal Shield lake

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: New Brunswick; Bouctouche

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: WA

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: South Korea: Boseong

ncbi_isolation_source: Ganjang

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: human gut

ncbi_organism_name: Bacillus massilioanorexius


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Pantoea sp. MBD-2R

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_country: USA: Fayetteville AR

ncbi_isolation_source: Grower Feed

ncbi_organism_name: Pantoea vagans

ncbi_submitter: Pittsburg State University


ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_organism_name: Peptoniphilus sp. ING2-D1G

ncbi_submitter: CEBITEC


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: genital sample

ncbi_organism_name: Leptospira santarosai

ncbi_submitter: Universidade Federal de Pelotas


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: University of Texas at Dallas


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Vampirovibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Leuconostoc citreum


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Alcanivorax profundi

ncbi_submitter: EMG


ncbi_country: USA: NC

ncbi_organism_name: Escherichia coli

ncbi_submitter: Case Western Reserve University


ncbi_organism_name: Citromicrobium bathyomarinum

ncbi_submitter: Shenzhen University


ncbi_country: China: Fujian; Ningde; xiapu

ncbi_organism_name: Bacillus luti

ncbi_strain_identifiers: FJ

ncbi_submitter: Dalian Ocean University


ncbi_country: Kazakhstan

ncbi_isolation_source: nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPLOWO2_12_FULL_40_42


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Poland

ncbi_isolation_source: Swiss cheese

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Warsaw University of Life Sciences - SGGW


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Candidatus Rickettsiella isopodorum

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprobacillus sp.


ncbi_organism_name: Streptomyces stelliscabiei

ncbi_submitter: University of Exeter


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Comamonas sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Australia: New South Wales

ncbi_isolation_source: cloaca

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: University of the Sunshine Coast


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: the seqafrica consortium


ncbi_country: China: Tianjin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Disease


ncbi_organism_name: Streptococcus equinus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Salmonella sp. C3221

ncbi_submitter: Sichuan University


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae UHKPC18

ncbi_submitter: JCVI


ncbi_country: China:Xiyang Village; Youxi County; Sanming City; Fujian Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Candidatus Jettenia caeni

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Jettenia;s__Candidatus Jettenia caeni

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Jettenia;s__Candidatus Jettenia caeni


ncbi_organism_name: Actinoplanes campanulatus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: China: Tibet

ncbi_isolation_source: water ice core [ENVO:01001530]

ncbi_organism_name: Aurantiacibacter arachoides

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_isolation_source: liver

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Streptomyces sp. NPDC001941

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_submitter: University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Rhodococcus qingshengii


ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vogeliibacteriota;s__Candidatus Vogelbacteria bacterium RIFOXYD1_FULL_51_18


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Central Research Institute of Epidemiology


ncbi_assembly_name: Rumen uncultured genome RUG11774

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Enterovibrio norvegicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Alcyoniella australis

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Lernaellota;c__Candidatus Lernaellaia;o__Candidatus Lernaellales;f__Candidatus Alcyoniellaceae;g__Candidatus Alcyoniella;s__Candidatus Alcyoniella australis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Cyanobacteria bacterium RYN_339

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium RYN_339


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: IBD Biopsy

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Broad Institute


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: University of Bern


ncbi_organism_name: Enterococcus sp. AZ187


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Wenzhouxiangella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Fusobacterium watanabei

ncbi_strain_identifiers: PAGU 1802

ncbi_submitter: MD Anderson Cancer Center


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Uruguay

ncbi_isolation_source: activated sludge reactor flocs

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Biological Research Institute "Clemente Estable"


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: urine

ncbi_submitter: FDA


ncbi_country: South Korea: Suwon

ncbi_isolation_source: Doejnang (High-salt fermented soybean)

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Dongduk Women's University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Woeseia sp.

ncbi_submitter: Monash University


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0304777.14

ncbi_submitter: IGS


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sudan

ncbi_isolation_source: Mycetoma Lesion

ncbi_organism_name: Actinomadura madurae

ncbi_submitter: Newcastle University


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: lake water

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_country: China:Guangzhou; Pearl River

ncbi_isolation_source: river

ncbi_submitter: South China Sea institute of Oceanology, Chinese academy of sciences


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MA; Boston

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Broad Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: University of Chicago


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: South Korea: Eumseong

ncbi_isolation_source: ginseng seedlings

ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Mycolicibacter hiberniae

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_country: Iran: Shiraz

ncbi_isolation_source: Wheat rhizosphere

ncbi_organism_name: Pseudomonas farsensis

ncbi_submitter: KU Leuven


ncbi_organism_name: Corynebacterium durum

ncbi_submitter: EMG


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shenzhen

ncbi_isolation_source: Umbilical cord

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: Poland: malopolskie

ncbi_isolation_source: hospital

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Institute of Biochemistry and Biophysics Polish Academy of Sciences


ncbi_isolation_source: Novel

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Brigham Young University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Acinetobacter halotolerans

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_submitter: SC


ncbi_country: Honduras

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: Actinophytocola sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Anaplasma capra

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Chlorobium sp.

ncbi_submitter: University of Waterloo


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA: Wildcat Cove Preserve; FL

ncbi_isolation_source: Gill tissue

ncbi_organism_name: Candidatus Sedimenticola endophacoides

ncbi_submitter: Clemson University


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: J. Craig Venter Institute


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pig Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Gaiellaceae bacterium


ncbi_country: United Kingdom

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Norway: Bergen

ncbi_isolation_source: biopsy

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: MD

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Flavitalea sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: South Africa

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Lithuania

ncbi_isolation_source: RTE salad mixes

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Peptoniphilus sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Streptococcus pyogenes ABC020052309

ncbi_submitter: Broad Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Verrucomicrobia subdivision 6 bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Verrucomicrobia subdivision 6;x__unclassified Verrucomicrobia subdivision 6;s__Verrucomicrobia subdivision 6 bacterium


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA: New York City

ncbi_isolation_source: skin-AD site

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: MRSN BI Team


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Bradyrhizobium ivorense

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Mobilitalea sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Streptomyces sp. NPDC059740


ncbi_organism_name: Acetobacter malorum

ncbi_submitter: Teagasc


ncbi_organism_name: Streptomyces caniferus


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Monash University


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Faecousia excrementipullorum


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: ganjang; Korean traditional soy sauce

ncbi_organism_name: Staphylococcus sp.

ncbi_submitter: Chung-Ang Univiersity


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SCOPE


ncbi_country: Germany

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Dialister sp.


ncbi_organism_name: Actinotignum timonense

ncbi_submitter: Capital Region


ncbi_organism_name: Dokdonia sp. R78006

ncbi_submitter: Universiteit Gent


ncbi_country: Brazil: Jales; Sao Paulo

ncbi_isolation_source: Plant xylem

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: University of Sao Paulo


ncbi_country: Colombia: Cali

ncbi_isolation_source: Peritoneal fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Thailand: Lat Phrao

ncbi_isolation_source: fresh seafood sold at markets and supermarkets located in Bangkok; Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. J-M41

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Veillonella sp.


ncbi_country: South Korea

ncbi_organism_name: Deefgea piscis

ncbi_submitter: Kyung Hee University


ncbi_assembly_name: Rumen uncultured genome RUG12132

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Northwestern University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Atlantic Ocean

ncbi_isolation_source: sample CTD7B from hydrothermal plume and surrounding marine water

ncbi_organism_name: SAR324 cluster bacterium SAR324-CTD7B

ncbi_submitter: HKUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium SAR324-CTD7B


ncbi_country: Nigeria: Katsina

ncbi_organism_name: Ochrobactrum sp. 689/2009

ncbi_submitter: USDA-ARS


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_submitter: SC


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES