ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Russia: Arkhangelsk Region; Kotlas

ncbi_genome_representation: full

ncbi_organism_name: Borreliella bavariensis

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_assembly_level: Contig

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_country: Germany: Braunschweig

ncbi_organism_name: Staphylococcus saccharolyticus

ncbi_refseq_category: reference genome

ncbi_submitter: US Food and Drug Administration

ncbi_type_material_designation: assembly from type material


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


gtdb_representative: t

ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Christensenella sp. UBA5893

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: not provided

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_submitter: Sichuan University


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Canada: Eel Lake; Yarmouth County; Nova Scotia

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Francisella tularensis

ncbi_strain_identifiers: FAM standard

ncbi_submitter: Swedish Defence Research Agency (FOI)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Agathobacter rectalis


ncbi_country: Guam: Piti Bomb Holes

ncbi_isolation_source: whole sponge tissue

ncbi_organism_name: Prochloron sp. SP5CPC1

ncbi_submitter: University of California, San Diego


ncbi_isolation_source: skin

ncbi_organism_name: Cutibacterium acnes HL020PA1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater effluent sample

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium thermacidophilum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Baltimore; MD

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: IGS


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS AMP-55

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS AMP-55

ncbi_submitter: The University Hong Kong


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_strain_identifiers: DEP

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bartonella sp. CB12SXKL

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Nitrospirota bacterium


ncbi_organism_name: uncultured Candidatus Brevefilum sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Brevifilum;x__environmental samples;s__uncultured Candidatus Brevefilum sp.


ncbi_organism_name: uncultured Sphingomonadaceae bacterium


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Vibrio pectenicida

ncbi_submitter: University of British Columbia


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Laboratory of Veterinary Bacteriology UFRGS


ncbi_organism_name: Cycloclasticus pugetii

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Alistipes indistinctus


ncbi_organism_name: Rubrivivax gelatinosus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: MOX K

ncbi_isolation_source: methanogen symbiont from mussel gill epithellium

ncbi_strain_identifiers: MOX K

ncbi_submitter: CRC 1182 Origin and Function of Metaorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__Bathymodiolus brooksi methanotrophic gill symbiont


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Riemerella anatipestifer

ncbi_strain_identifiers: RA-NM

ncbi_submitter: Jiagsu Agri-animal Husbandry Vocational College


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: Denmark

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli KOEGE 7 (16a)

ncbi_strain_identifiers: KOEGE 7 (16a)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli KOEGE 7 (16a)


ncbi_organism_name: Brevibacillus formosus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0236R


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P12RS

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P12RS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_country: Oman

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Sultan Qaboos University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_country: New Zealand: Macauley Cone

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Bathyaustriella thionipta


ncbi_submitter: University of Copenhagen


ncbi_country: USA: San Diego County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: New Zealand: Leeston

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CMB75_RIF L4:3

ncbi_submitter: University of Canterbury


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shanxi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides nordii

ncbi_submitter: University of Chicago


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis PM221

ncbi_submitter: BGI


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: Southern Ocean: Bransfield Strait

ncbi_organism_name: Pseudoalteromonas ruthenica

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: seawater from hadal water (10;400-10;500 m)

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Ocean University of China


ncbi_country: Australia

ncbi_submitter: The ithree institute


ncbi_country: China: Wuhan

ncbi_isolation_source: seawater layers

ncbi_organism_name: Aurantimonas coralicida

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_organism_name: Helicobacter pylori SA146C

ncbi_submitter: MHH


ncbi_organism_name: Streptomyces sp. NPDC001668

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_isolation_source: Breast milk

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Lactobacillus reuteri GDMCC 60546


ncbi_country: Switzerland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: Sacramento; CA

ncbi_organism_name: Escherichia coli

ncbi_submitter: UC Davis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Spain: Madrid

ncbi_submitter: IRYCIS


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_country: France

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: Streptomyces sp. NPDC091268


ncbi_country: China: Shanghai

ncbi_isolation_source: pond sediment

ncbi_organism_name: Alicycliphilus denitrificans

ncbi_submitter: Shanghai Fisheries Research Institute


ncbi_organism_name: Acholeplasma oculi

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas sp. NBRC 111129

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Iran: Tehran

ncbi_isolation_source: groundwater

ncbi_organism_name: Sandarakinorhabdus limnophila

ncbi_submitter: University of Tehran


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: University of Verona, Italy


ncbi_organism_name: Tenacibaculum sp. SSH1-16

ncbi_submitter: Meyer Microbes Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0131

ncbi_submitter: Broad Institute


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: AR

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Kouleothrix sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE83


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: IZSLER


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Pseudothermotoga sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: Sweden: Orebro

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: China: Changjiang estuary

ncbi_isolation_source: surface water

ncbi_organism_name: Rhodococcus sp. C-2

ncbi_submitter: Shanghai JiaoTong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. C-2


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Thailand

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Pyrogenes;x__Leptospira interrogans serovar Pyrogenes str. L0374


ncbi_country: Germany

ncbi_isolation_source: Poultry Meat (Whole Chicken)

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The German Federal Institute of Risk Assessment (BfR)


ncbi_country: United Kingdom

ncbi_isolation_source: fecal sample

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: University of Surrey


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F92047

ncbi_submitter: Broad Institute


ncbi_country: Russia: Tuva

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Birmingham


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Phyllobacterium sp. DC2300-2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Alkalibacterium sp. f15

ncbi_submitter: Inner mongolia normal university


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: India

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: CRN 13

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_country: China: Yangzhou City; Jiangsu Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: France: Monesties

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas siliginis

ncbi_submitter: INRAE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Marinilabiliales bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: water samples from two horizons (5 m and 20 m) were filtered through the net (size 27-um) and then filtered through nitrocellulose filters with a pore size of 0.22 um

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Sneathiella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Ligilactobacillus hohenheimensis

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Malaysia: Port Dickson

ncbi_isolation_source: Coastal marine water

ncbi_organism_name: Vibrio sinaloensis

ncbi_submitter: University of Malaya


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- MJ130617A_bin-235

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: South Korea: Seoul

ncbi_isolation_source: nasophraynx

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chungbuk National University Hospital


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_assembly_level: Chromosome

ncbi_country: Japan

ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Obihiro University of Agriculture and Veterinary Medicine


ncbi_organism_name: Schleiferilactobacillus harbinensis

ncbi_submitter: Teagasc


ncbi_country: USA: Massachusetts

ncbi_isolation_source: dental plaque

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: placenta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Cloacibacillus sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: MD

ncbi_isolation_source: feces

ncbi_organism_name: Shigella boydii

ncbi_strain_identifiers: DMB SH112

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_assembly_name: PMEN

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Pakistan: Peshawar

ncbi_isolation_source: Catheter tip

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umea University


ncbi_country: China: Chutan; Jiangxi

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium chutanense

ncbi_submitter: Northwest A&F University


gtdb_type_species_of_genus: t

ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Irregularibacter muris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Capnocytophaga granulosa


ncbi_country: China: Tianzi Mountain; Hunan

ncbi_isolation_source: soil

ncbi_organism_name: Sphaerisporangium album

ncbi_strain_identifiers: CCTCC AA 208026

ncbi_submitter: Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_country: China: Shangdong

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: Australia: Clermont; QLD

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Queensland


ncbi_country: Canada: Saskatoon

ncbi_organism_name: Brachyspira hampsonii

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universite Laval


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Gwangju

ncbi_organism_name: Streptococcus sobrinus

ncbi_strain_identifiers: KCOM 1157

ncbi_submitter: Chosun University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: China: Beijing

ncbi_submitter: Beijing Institute of Genomics


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_country: Germany

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University Hospital Jena, Germany


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA1490


ncbi_organism_name: Lactobacillus xylocopicola

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_organism_name: Klebsiella sp. GG_Kp143

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Listeria monocytogenes


ncbi_country: USA

ncbi_isolation_source: Cerebral spinal fluid

ncbi_submitter: FDA


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: DTA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_country: India: Kolkata

ncbi_isolation_source: stool

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Colombia

ncbi_isolation_source: plantain

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Virginia Tech


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: Japan

ncbi_organism_name: Helicobacter pylori CPY1962

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Jyvaskyla


ncbi_country: Japan: Okinawa

ncbi_isolation_source: Kidney

ncbi_organism_name: Leptospira interrogans serovar Manilae

ncbi_strain_identifiers: UP-MMC-NIID HP

ncbi_submitter: Okinawa Institute of Advanced Sciences


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P90P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Shandong University


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Pyxidicoccus fallax

ncbi_submitter: Aberystwyth University


ncbi_assembly_name: Escherichia coli CVM N36918PS v. 1.0

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N36918PS


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F68118

ncbi_submitter: Broad Institute


ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Priestia megaterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolate: Arthrobacter sp. 9AX

ncbi_organism_name: Arthrobacter sp. 9AX

ncbi_strain_identifiers: Arthrobacter sp. 9AX

ncbi_submitter: Elham Karimi


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium CG_4_9_14_3_um_filter_36_7


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: University of Queensland


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Bristol


ncbi_country: Belgium

ncbi_isolation_source: Seaweed sample 2

ncbi_organism_name: Clostridium sp. ZS2

ncbi_submitter: KULeuven


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: BGI


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_submitter: EMG


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_strain_identifiers: NCTC 8325

ncbi_submitter: University of Oklahoma Health Sciences Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus NCTC 8325


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: Italy

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolate: isolate

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: School of Life and Health Sciences


ncbi_organism_name: Victivallales bacterium


ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Vibrio cidicii

ncbi_submitter: Nantong Hospital 3 of Nantong University


ncbi_organism_name: Massilia sp. CT11-137

ncbi_submitter: North Carolina State University


ncbi_organism_name: uncultured Syntrophus sp.


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Candidatus Scybalocola faecigallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Purdue University


ncbi_country: France

ncbi_isolation_source: bile

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Paris-Sud


ncbi_country: Switzerland: Bern

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Applied Sciences of Western Switzerland hepia


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shandong

ncbi_isolation_source: chicken legs and breast from supermarket

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: Kimchi

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Kangwon National University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri


ncbi_isolation_source: metagenome

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Cellvibrionales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: prosthetic joint infections

ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Aarhus University


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College


ncbi_country: Colombia: Quilichao

ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_isolation_source: orthopedic device (ODRI) sonication fluid

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universidade Federal de Sao Paulo (UNIFESP)


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock biobioreactor

ncbi_organism_name: Burkholderiales bacterium 68-10

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: unknown

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Actinoplanes auranticolor

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: Conjunctiva

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of New South Wales


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Negativicutes bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Canada: Nipigon; ON

ncbi_isolation_source: soil

ncbi_organism_name: Amycolatopsis sp. WAC 04169

ncbi_submitter: McMaster University


ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: NARO Institute of Fruit Tree Science (NIFTS), National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: China: Guangdong

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Taiwan

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Bangladesh

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Greece

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_country: Italy: Aosta

ncbi_isolation_source: cheese

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_country: USA: CO

ncbi_isolation_source: feces goose

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: China: Shenzhen

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: BGI


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF51-7-b10A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Zhejiang university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Santa Barbara Zoo

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW460-12-1-14-TSB6

ncbi_submitter: Arkin Lab


ncbi_country: India: North Bay island; Andaman

ncbi_organism_name: Salinicola acroporae

ncbi_submitter: Universidade de Aveiro


ncbi_country: Japan

ncbi_isolation_source: Hospital sewage

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Tokyo Medical and Dental University


ncbi_country: USA: Oklahoma

ncbi_isolation_source: sulfur-rich sediment

ncbi_organism_name: Nitratireductor sp. ZSWI3

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Bacillus sp. UMB0728

ncbi_submitter: Loyola University Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. UMB0728


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 208

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 1346

ncbi_submitter: University of Calgary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Hubei; Wuhan

ncbi_isolation_source: chicken intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: Canadian Research Institute for Food Safety

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Portugal

ncbi_isolation_source: Mussels

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: USA

ncbi_isolation_source: turkey

ncbi_organism_name: Chlamydia psittaci NJ1

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia psittaci;x__Chlamydia psittaci NJ1


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: KU Leuven


ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: stem of Kandelia obovata

ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_strain_identifiers: stem of Kandelia obovata;bgisy056

ncbi_submitter: BGI Research


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Monash University


ncbi_organism_name: Sphingobium scionense

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Brazil: Blumenau


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp1 AA119

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp1 AA119

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Bifidobacterium bifidum


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Henan Agricultural University


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_country: USA: Canoe Cove; Nahant; MA

ncbi_isolation_source: filtered seawater; >63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Australia: Queensland

ncbi_organism_name: Chlamydia pecorum IPTaLE

ncbi_strain_identifiers: IPTaLE

ncbi_submitter: Queensland University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia pecorum;x__Chlamydia pecorum IPTaLE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_organism_name: Acutalibacter muris


ncbi_isolation_source: Georgia; leaf or steam petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: lung

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Ares Genetics


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Brazil: Sales Oliveira

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Norway

ncbi_isolation_source: Bivalve mollusc

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_country: China: Guangdong

ncbi_isolation_source: Clinical Microbiology Laboratory

ncbi_submitter: Guangdong Provincial People's Hospital


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lentisphaerota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__environmental samples;s__uncultured Lentisphaerota bacterium


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Sichuan province

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Australia: Capella

ncbi_isolation_source: Pool

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Minnesota


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Dietzia maris


ncbi_country: Antarctica

ncbi_isolation_source: mineral substrate

ncbi_organism_name: Pseudomonas gregormendelii

ncbi_submitter: University of Balearic Islands


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Oakland

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Escherichia coli MS 57-2

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Romania: Children Hospital from Bucharest

ncbi_isolation_source: tracheal secretion

ncbi_strain_identifiers: Aba 24S

ncbi_submitter: University of Bucharest


ncbi_country: USA: Grand Rapids; Minnesota

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Lebanon

ncbi_isolation_source: River water1

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_country: China: Guangxi

ncbi_isolation_source: soil

ncbi_submitter: Nanjing Agricultural university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Phyllobacteriaceae;g__Pseudaminobacter;s__Pseudaminobacter soli (ex Zhang et al. 2022)


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Argentina: Andean Patagonia; Rio Negro; El Bolson Villages

ncbi_isolation_source: Pond water with small depth; with [Fe] =3;8 mg/L; oily sheens similar to an oil spill and Reddish-deposits of iron hydroxides are frequently observed in the water.

ncbi_organism_name: Vogesella sp. EB

ncbi_strain_identifiers: EB

ncbi_submitter: INDEAR


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Thalassobacillus pellis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Wyoming

ncbi_isolation_source: retail meat

ncbi_organism_name: Salmonella enterica


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Ngawa; Sichuan

ncbi_isolation_source: Fermented cattle milk

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: China: Weizhou Island

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Exiguobacterium sp. s63

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s63


ncbi_country: United Kingdom: Egham

ncbi_organism_name: Neisseria sp. RH3002v2f

ncbi_submitter: Kingston University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_country: Comoros

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: India: Iewduh; Shillong

ncbi_isolation_source: Retail chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_country: USA: Wisconsin

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: JMI Laboratories


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: sediment

ncbi_organism_name: Kordiimonas pumila

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: EMG


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Salibacter sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: freshwater MAG --- Loclat_bin-01431

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__environmental samples;s__uncultured Candidatus Berkelbacteria bacterium


ncbi_country: Iraq

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_assembly_name: freshwater MAG --- AM-2014-D8_bin-0909

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Ohio; western Lake Erie

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_submitter: University of Michigan


ncbi_organism_name: Psychromonas sp. KJ10-10

ncbi_submitter: Chung-Ang university


ncbi_submitter: GenomeTrakr Project: Ohio Department of Agriculture | Animal Disease Diagnostic Laboratory


ncbi_organism_name: Halorhodospira sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Parafannyhessea umbonata

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Pseudanabaena sp.


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Segatella sp.


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Segatella copri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Moorellaceae bacterium


ncbi_assembly_name: Dplu

ncbi_isolate: Dplu

ncbi_organism_name: Candidatus Dasytiphilus stammeri

ncbi_strain_identifiers: Dplu

ncbi_submitter: Max Planck Institute for Chemical Ecology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Dasytiphilus;s__Candidatus Dasytiphilus stammeri


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: uncultured Terracidiphilus sp.


ncbi_assembly_name: freshwater MAG --- KR2_bin-0720

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Carnimonas bestiolae

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Kitasatospora arboriphila

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Illinois

ncbi_isolation_source: kitchen counter

ncbi_organism_name: Bradyrhizobium sp. UBA2491

ncbi_submitter: University of Queensland


ncbi_country: USA:New York Ontario

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Lentisphaeraceae bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Merdimmobilis hominis

ncbi_submitter: Nanjing University


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin swab

ncbi_organism_name: Brevibacterium luteolum

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: SC


ncbi_country: Norway

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio sp. A8-1

ncbi_submitter: IMR


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Chicago


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: University Hospital Tuebingen


ncbi_country: China: Harbin

ncbi_isolation_source: seed

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: School of life science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG13

ncbi_organism_name: Zetaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: tonsil swab

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-6380

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_submitter: sichuan university


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: USA: White Oak Rive Estuary; North Carolina

ncbi_isolation_source: Sulfate-methane transisition zone estuary sediments 16-26 cm

ncbi_organism_name: Acidithiobacillales bacterium SM1_46

ncbi_submitter: University of Texas


ncbi_country: Russia: Nizhny Novgorod

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_organism_name: Nitriliruptorales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Toho University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli


ncbi_country: Switzerland: Basel

ncbi_isolation_source: clinical sample

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: France

ncbi_isolation_source: raw milk

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 7

ncbi_submitter: Brigham Young University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_country: China: Anhui

ncbi_isolation_source: chicken meat products

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: China: Beijing

ncbi_isolation_source: hyphae

ncbi_organism_name: Achromobacter sp. 77

ncbi_submitter: Institute of plant protection,CAAS


ncbi_organism_name: Lacticaseibacillus rhamnosus HN001

ncbi_submitter: Fonterra Research Centre


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: blood

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium


ncbi_organism_name: Rhodobacter viridis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Peru

ncbi_submitter: SC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: nonsterile tissues such as skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Notre Dame


ncbi_country: Canada: London Ontario

ncbi_isolation_source: yogurt

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: ProBiota Inc


ncbi_country: Italy: Bay of Fetovaia; Elba

ncbi_isolation_source: gill tissue of clam

ncbi_organism_name: Candidatus Thiodiazotropha endoloripes

ncbi_submitter: University of Vienna


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Alachua


ncbi_country: Switzerland: Bern

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: University of Bern


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED20

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED20


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Region Zealand


ncbi_country: USA

ncbi_isolation_source: Thai Basil

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Catalinimonas sp. 4WD22

ncbi_submitter: Shandong University at Weihai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: soil

ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: Heap Lab University of Nottingham


ncbi_submitter: Soochow University


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1082

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China: Chongqing

ncbi_isolation_source: milk from farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Leeuwenhoekiella palythoae

ncbi_submitter: Xiamen University


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Foley Catheter

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_assembly_name: IMG-taxon 2667527233 annotated assembly

ncbi_organism_name: Pseudomonas mucidolens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Prevotella dentalis

ncbi_submitter: EMG


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: USDA ARS


ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: AM

ncbi_submitter: Saurashtra University


ncbi_organism_name: Idiomarina seosinensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: NanJing University


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Bellilinea sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Canada

ncbi_isolation_source: Seafood

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Rothia aeria

ncbi_submitter: EMG


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Afghanistan

ncbi_isolation_source: Tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus WMCS6016

ncbi_submitter: Broad Institute


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Singapore

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus AQ3810

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus AQ3810


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Huzhou

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: School of Environment and Resources


ncbi_organism_name: Desulfuromonadales bacterium


ncbi_organism_name: Photorhabdus sp. S8-52

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: Lyons; GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: water

ncbi_organism_name: Comamonas aquatica

ncbi_submitter: Shandong First Medical University


ncbi_organism_name: Acidithiobacillus sp. VAN18-4

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Rhizobium sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Gemmata sp.

ncbi_submitter: Northeastern University


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: USA: California

ncbi_isolation_source: uncontaminated groundwater aquifer

ncbi_organism_name: Methylocystis hirsuta

ncbi_submitter: University of Valladolid


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_strain_identifiers: Fecal samples


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides sp. CAG:702

ncbi_submitter: DTU


ncbi_organism_name: Maribacter litoralis

ncbi_submitter: Shantou University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0088R

ncbi_submitter: Broad Institute


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Asturias

ncbi_organism_name: Bifidobacterium crudilactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_submitter: China Jiliang University


ncbi_country: Hungary: Debrecen

ncbi_submitter: Debreceni Egyetem


ncbi_organism_name: Morganella morganii


ncbi_country: USA: Virginia

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Nitrospira sp.


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Gemmatimonadales bacterium UBA4456

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Metallibacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Nanchang

ncbi_isolation_source: rectal swab from healthy participants

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: beijing


ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: Rumen uncultured genome RUG11031

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succiniclasticum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: University of California Davis


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: nankai university


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: gut

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3861


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium RIFOXYA2_FULL_43_12


ncbi_organism_name: Pseudomonas marginalis

ncbi_submitter: Cornell University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Antarctica: McMurdo Dry Valleys region; Lake Fryxell

ncbi_isolation_source: microbial mat sample from a shallow moated area

ncbi_organism_name: Clostridium bowmanii

ncbi_submitter: AgResearch


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_submitter: Massey University


ncbi_organism_name: uncultured Syntrophobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Salmonella sp. C1974

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Georgia;Atlanta

ncbi_isolation_source: sputum

ncbi_submitter: Emory University


ncbi_country: Australia:New South Wales

ncbi_isolation_source: fetus

ncbi_organism_name: Chlamydia pecorum

ncbi_submitter: NSW Department of Primary Industries


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea longicatena

ncbi_submitter: University of Chicago


ncbi_organism_name: Thiopseudomonas alkaliphila

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: poultry - broilers

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillus cereus group sp. MYBK6-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK6-1


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. R-74717

ncbi_submitter: Ghent University


ncbi_organism_name: Bacteroides sp. f07

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Microbulbifer sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal University of Agriculture Abeokuta


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Drexel


ncbi_organism_name: Oliverpabstia sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Microthrixaceae bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_name: freshwater MAG --- Umea3p1_bin-1496

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Candidatus Methylopumilus planktonicus

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Universidad Juarez Autonoma de Tabasco

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1566


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Sun Yat-sen University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pig Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: USA: Iowa; Ames

ncbi_isolation_source: carrot

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Iowa State University


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Yancheng

ncbi_isolation_source: Farm

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_organism_name: Rheinheimera fenheensis

ncbi_submitter: Shanxi Agricultural University


ncbi_submitter: Center for Microbial Communities


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_submitter: Swiss Tropical and Public Health Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory


ncbi_country: France: Marseille

ncbi_isolation_source: bone

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: URMITE IHU-Mediterranee Infection

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_assembly_name: Rumen uncultured genome RUG14277

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: Erysipelotrichaceae bacterium


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Brevibacillus invocatus

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Infection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Germany: Bochum

ncbi_isolation_source: ear

ncbi_organism_name: Auritidibacter ignavus

ncbi_submitter: Institut fuer Medizinische Laboratoriumsdiagnostik Bochum GmbH


ncbi_organism_name: Pyrinomonas methylaliphatogenes

ncbi_submitter: GNS


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University