ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. K5806

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K5806


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Amycolatopsis bartoniae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_assembly_level: Contig

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: KS

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus helsingborgensis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Leyella lascolaii

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Poland

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: nankai university


gtdb_representative: t

ncbi_country: USA: California

ncbi_isolation_source: Bay sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Ireland: Gweedore

ncbi_isolation_source: haemolymph

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: Cefas


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Gordonia crocea

ncbi_refseq_category: reference genome

ncbi_submitter: NBRC

ncbi_type_material_designation: assembly from type material


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: mucosa of vagina [UBERON:0004983]

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: TNO


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: China: Jinhua

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Halalkalibaculum sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: urine

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_organism_name: Psychrobacter sp. UBA2769

ncbi_submitter: University of Queensland


ncbi_country: Tanzania

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: CLUE-TERRA


ncbi_assembly_level: Complete Genome

ncbi_country: Malawi

ncbi_submitter: 10k Salmonella genomes project

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Sphingomonas sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella oxytoca


ncbi_country: France

ncbi_isolation_source: Minced meat

ncbi_submitter: Anses


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Mahidol University


ncbi_country: Turkey: Sindirgi; Caygoren Dam lakeside

ncbi_isolation_source: Soil

ncbi_organism_name: Kribbella sindirgiensis

ncbi_submitter: University of Cape Town


ncbi_country: USA: North Carolina

ncbi_isolation_source: Piedmont

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Thermoanaerobaculales bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: USA: LA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (MCD) from International Space Station

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: J.Craig Venter Institute


ncbi_isolation_source: chicken offal or meat

ncbi_organism_name: Campylobacter coli


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Microbacterium halimionae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Chile

ncbi_isolation_source: salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Citrobacter sp. 18056

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V14_P6S14T42

ncbi_submitter: Instituto de ecologia


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: alpha proteobacterium HIMB114

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__unclassified Pelagibacteraceae;s__alpha proteobacterium HIMB114


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: China:Mohe County; Heilongjiang Province

ncbi_isolation_source: peat bog

ncbi_organism_name: Paenibacillus alginolyticus

ncbi_submitter: Ghent University


ncbi_country: India

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Methylococcales bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Microcella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Saprospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC057429

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Minisyncoccales bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;s__Minisyncoccales bacterium


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Georgia


ncbi_organism_name: Providencia sp. PROV173

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Nodosilinea sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Candidatus Poriferihabitaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC005381


ncbi_organism_name: Candidatus Multivoradales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;x__unclassified Candidatus Multivoradales;s__Candidatus Multivoradales bacterium


ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: Malaysia

ncbi_isolation_source: waterfall

ncbi_organism_name: Cedecea neteri

ncbi_submitter: University of Malaya


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_isolation_source: feces

ncbi_submitter: University of California at Davis


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-0826

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: Facklamia hominis

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteroidetes bacterium UBA6221

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA6221


ncbi_organism_name: Dysgonomonadaceae bacterium PH5-43

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_level: Chromosome

ncbi_country: USA: New York City

ncbi_isolation_source: human blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Mount Sinai School of Medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Houston

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_assembly_name: IMG-taxon 2706794915 annotated assembly

ncbi_organism_name: Desulfonatronum zhilinae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptomyces clavifer

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: Finland

ncbi_isolation_source: spoiled sous-vide-cooked rutabaga (Brassica napobrassica)

ncbi_organism_name: Leuconostoc rapi

ncbi_submitter: Northeast Agricultural University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Tomitella cavernea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Segatella copri

ncbi_submitter: CLUE-TERRA


ncbi_isolate: Previously collected from blood cultures (R)

ncbi_isolation_source: Blood

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Coprothermobacter proteolyticus


ncbi_country: Brazil

ncbi_isolation_source: slaughterhouse

ncbi_submitter: University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Nocardioides sp. YIM 152588

ncbi_submitter: Yunnan University


ncbi_isolation_source: Potato scab

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Thailand

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: Japan

ncbi_isolation_source: Infant feces

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Korea University


ncbi_organism_name: Methyloprofundus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_isolate: swine fecal

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: swine fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_isolation_source: wheat rhizosphere

ncbi_organism_name: Bacillus velezensis YAU B9601-Y2

ncbi_submitter: Faculty of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201 , PR China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis;x__Bacillus velezensis YAU B9601-Y2


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_submitter: West China hospital of Sichuan university


ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium RIFCSPLOWO2_01_FULL_48_25


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudoruminococcus massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: The First Hospital of Jilin University


ncbi_organism_name: Paenarthrobacter sp. CCNWLW172

ncbi_submitter: Northwest A&F University


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef carcass

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_assembly_name: freshwater MAG --- MJ110802A_bin-121

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: Middle ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_isolation_source: spice

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Sichuan Agricultural University


ncbi_country: China: Guangzhou

ncbi_isolation_source: sputum

ncbi_submitter: University College London (UCL)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: China Agricultural University


ncbi_organism_name: Mycolicibacterium sp. BK607

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Mushroom cap surface

ncbi_organism_name: Pseudomonas sp. NS1(2017)

ncbi_submitter: University of Reading


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: J.Craig Venter Institute


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Roseovarius sp. MMSF_3281

ncbi_submitter: The University of Melbourne


ncbi_country: Malaysia

ncbi_isolation_source: faecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Malaya


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: University of Parma


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: Thailand: Hat Yai City; Songkhla province

ncbi_isolation_source: environmental

ncbi_submitter: National University of Singapore and Genome Institute of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: China:Hubei; Wuhan

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Bacillus velezensis SQR9

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis;x__Bacillus velezensis SQR9


ncbi_country: South Korea: Jeollanam-do; Sinan-gun; Jeungdo-myeon

ncbi_isolation_source: Saltern

ncbi_organism_name: Halobacillus shinanisalinarum

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Fulvivirga sp.

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KULeuven


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Chitinophagaceae bacterium LWZ2-11

ncbi_submitter: UCAS


ncbi_organism_name: Cycloclasticus pugetii

ncbi_submitter: Ocean University of China


ncbi_organism_name: Streptomyces sp. NPDC052016

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0155

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolate: AOP42_E1_surf _bin _25

ncbi_organism_name: Luteimonas sp.

ncbi_strain_identifiers: AOP42_E1_surf _bin _25

ncbi_submitter: Genoscope


ncbi_country: China: Guangdong

ncbi_isolation_source: wall

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: freshwater MAG --- Umea3_bin-3953

ncbi_organism_name: uncultured Acidobacteriia bacterium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Boston

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Quadram Institute Bioscience


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. doylei;x__Campylobacter jejuni subsp. doylei ATCC 49349


ncbi_country: United Kingdom: Slough

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ANIWHA


ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium UBA929

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Oxford University


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Limosilactobacillus sp.

ncbi_submitter: Institute of Microbiology


ncbi_country: USA: Anza-Borrego Desert; California

ncbi_organism_name: Neorhizobium sp. R1-B


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Lysinibacillus sp. LK3

ncbi_submitter: University of Malaya


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_organism_name: Streptomyces sp. NPDC005776

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean: Sea of Japan

ncbi_isolation_source: Seaweed/starfish/sea water

ncbi_organism_name: Malaciobacter marinus

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Yoonia sp.

ncbi_submitter: University of Southern California


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Haliangium ochraceum

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Polyangiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: IN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: VT


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: JJC 1.0

ncbi_country: Malaysia

ncbi_isolation_source: Landfill leachate sludge

ncbi_organism_name: Clostridium perfringens JJC

ncbi_strain_identifiers: JJC

ncbi_submitter: Monash University


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus oralis


ncbi_country: USA: Athens

ncbi_isolation_source: Cecum

ncbi_organism_name: Clostridium sp. C2-6-12

ncbi_submitter: Western University of Health Sciences


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_country: Russia: Shira lake

ncbi_isolation_source: water

ncbi_organism_name: Aliidiomarina shirensis

ncbi_strain_identifiers: AIS

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cpo091

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Algeria: Gara Djebilet Center

ncbi_isolation_source: crushed rocks in Gara Djebilet Iron Mine

ncbi_organism_name: Streptomyces sp. CSDS2

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_isolation_source: root nodule

ncbi_organism_name: Roseateles noduli

ncbi_submitter: Northwest A&F University


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: China: Guangzhou

ncbi_isolation_source: fecal sample

ncbi_submitter: SouthChina Agriculture University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Iowa; Ames

ncbi_isolation_source: Green onion

ncbi_organism_name: Erwinia persicina

ncbi_submitter: Iowa State University


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Carboxydocella sp. ULO1

ncbi_submitter: Laboratory of Marine Microbiology, Graduate School of Agriculture, Kyoto University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVI. Incertae Sedis;g__Carboxydocella;x__unclassified Carboxydocella;s__Carboxydocella sp. ULO1


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonadales bacterium


ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S078

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S078


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Heilongjiang

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_country: Tanzania

ncbi_submitter: University of Copenhagen


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Escherichia fergusonii

ncbi_strain_identifiers: FDAARGOS 1438

ncbi_submitter: US Food and Drug Administration


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_submitter: Quadram Institute Bioscience


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acidothermaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: China Center of Industrial Culture Collection


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolate: AOP43_E1_surf _bin _9

ncbi_organism_name: Anaerococcus sp.

ncbi_strain_identifiers: AOP43_E1_surf _bin _9

ncbi_submitter: Genoscope


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae ICMP 18804


ncbi_country: United Kingdom

ncbi_isolation_source: Slurry

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Nottingham


gtdb_type_species_of_genus: t

ncbi_country: USA: Kentuicky

ncbi_organism_name: Bacteriovorax stolpii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Streptomyces chryseus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Corynebacterium aurimucosum

ncbi_submitter: BGI


ncbi_organism_name: uncultured Ilyomonas sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Varibaculum prostatecancerukia

ncbi_submitter: UNIVERSITY OF EAST ANGLIA, UK


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Blautia caecimuris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Chthoniobacter sp.


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Neisseria sp. P0019.S003

ncbi_submitter: Rochester Institute of Technology


ncbi_isolate: SPRUCE 412

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 412

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Desulfarculaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Turkmenistan: Darvaz

ncbi_isolation_source: Desert soil

ncbi_organism_name: Jiangella ureilytica

ncbi_submitter: Ondokuz Mayis University


ncbi_country: China: Xiamen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Rhizobiales bacterium SYSU XM002

ncbi_strain_identifiers: SYSU XM002

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;x__unclassified Hyphomicrobiales;s__Rhizobiales bacterium SYSU XM002


ncbi_country: China: Hohhot

ncbi_isolation_source: Soil samples of oats

ncbi_organism_name: Deinococcus rhizophilus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Leptospira interrogans serovar Manilae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Taiwan

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albany


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sengenics sdn bhd


ncbi_country: USA: MI

ncbi_isolation_source: ground beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of Auckland


ncbi_country: China: Beijing

ncbi_isolation_source: pleural effusion

ncbi_strain_identifiers: ST648;Pleural Effusion of Patients with Empyema Thoracis

ncbi_submitter: Peking University People's hospital


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Canada: Guelph

ncbi_submitter: University of Guelph


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: human gut

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Haematospirillum sp. H4485

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Muribaculum intestinale


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Nantong; Jiangsu province

ncbi_isolation_source: feces

ncbi_submitter: Yangzhou University


ncbi_isolation_source: ballast tank

ncbi_organism_name: Shimia sp.

ncbi_submitter: Shandong university


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: University of Chicago


ncbi_country: China

ncbi_isolation_source: marine sediment

ncbi_organism_name: Psychrobacter coccoides

ncbi_submitter: Shangdong university at Weihai


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_country: South Korea

ncbi_isolation_source: plant

ncbi_organism_name: Rhizobium sp. C1

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10629

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Moraxella bovoculi

ncbi_submitter: Southwest Minzu University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China:Hubei; Huanggang

ncbi_isolation_source: trachea

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater effluent sample

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: The REHAB Consortium


ncbi_country: USA: Maryland

ncbi_isolation_source: Fish tissue

ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: University of Georgia


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Switzerland

ncbi_isolation_source: EFB infected honey bee larva

ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_country: Pakistan: Mithi

ncbi_isolation_source: Plant Root

ncbi_organism_name: Paenibacillus sp. PK3_47

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_isolation_source: wastewater metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Paraglaciecola sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: Russia: central region

ncbi_isolation_source: saliva

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0293R

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Microcystis panniformis

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: CSUF


ncbi_country: Finland: Hameenlinna (Evo); Lake Alinen-Mustajarvi

ncbi_isolation_source: lake water

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Rhodanobacter sp. FW102-FHT14D07

ncbi_submitter: ENIGMA


ncbi_organism_name: Algoriphagus aquimarinus


ncbi_country: USA: Georgia cypress swamp

ncbi_isolation_source: UBT laboratory stock

ncbi_organism_name: Rhodomicrobium lacus

ncbi_strain_identifiers: DSM 166

ncbi_submitter: University of Bayreuth


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Academy of Military Medical Science


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Citrobacter sp. KTE151


ncbi_country: Chile: Santiago

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter sp. UC24323

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Australia: Melbourne

ncbi_isolation_source: respiratory

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Monash University


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Clostridiaceae bacterium UBA4819

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: France

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: University of Goettingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Salmonella sp. SJTUF15600

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Microbacterium sp. RD1

ncbi_submitter: Nanjing Normal University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lachnospiraceae bacterium PFB1-21

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_genome_category: derived from single cell

ncbi_organism_name: alpha proteobacterium SCGC AAA536-K22

ncbi_strain_identifiers: SCGC AAA536-K22

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__unclassified Alphaproteobacteria;s__alpha proteobacterium SCGC AAA536-K22


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: 3347PM;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_submitter: EMG


ncbi_organism_name: Spirilliplanes yamanashiensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Chicken Curry

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Malaysia: Kampung Trombol area of Kuching; Sarawak

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Streptomyces sp. MUM 16J

ncbi_strain_identifiers: MUM 16J

ncbi_submitter: Monash University Malaysia


ncbi_country: Iceland

ncbi_isolation_source: gut from farmed juvenile Arctic char

ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Matis ohf


ncbi_country: Denmark: Hovedstaden;Copenhagen

ncbi_isolation_source: Proficiency Panel Isolate

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_assembly_name: Salmonella enterica CVM N50445 v1.0

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:i:-


ncbi_country: USA: SD

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Mycobacterium tuberculosis H37RvAE

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis H37Rv;x__Mycobacterium tuberculosis H37RvAE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Haruko Takeyama Lab., Waseda University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University College Cork


ncbi_submitter: University of Illinois at Urbana Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_submitter: University of Bern


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agroscope


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium aurimucosum

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Candidatus Pacearchaeota archaeon

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;x__Candidatus Pacearchaeota;x__unclassified Candidatus Pacearchaeota;s__Candidatus Pacearchaeota archaeon


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: India: Kerala; Ernakulam

ncbi_organism_name: Rhizobium sp. L1K21

ncbi_submitter: National Institute for Interdisciplinary Science and Technology (CSIR)


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Peptoniphilus lacrimalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Enterococcus pseudoavium

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Escherichia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Achnasheen

ncbi_isolate: IricAchnasheen

ncbi_isolation_source: ovaries

ncbi_organism_name: Candidatus Midichloria mitochondrii

ncbi_strain_identifiers: IricAchnasheen

ncbi_submitter: University of South Bohemia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Brigham Young University


ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris-Sud


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University


ncbi_country: Tunisia

ncbi_isolation_source: seafood

ncbi_submitter: ANSES


ncbi_country: India: Kochi; Kerala

ncbi_isolation_source: marine or sediment

ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: CEW AP102

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: EMG


ncbi_submitter: University of Pittsburgh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae ATCC 43816


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_country: Hungary

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yale School of Public Health


ncbi_country: USA

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA123

ncbi_submitter: Broad Institute


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides nordii


ncbi_organism_name: Chryseobacterium sp. NEB161

ncbi_submitter: NEB


ncbi_country: South Africa: Stev Bieko Acedemic Hospital

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Staphylococcous aureus

ncbi_submitter: University of Pretoria


ncbi_country: China: Shenzhen

ncbi_organism_name: Odoribacter sp. AF15-53

ncbi_submitter: BGI


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: ANSES Ploufragan


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Yunnan province

ncbi_isolation_source: root

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: Yunnan University


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: human stool

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Stanford University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Vibrio harveyi 1DA3

ncbi_submitter: LNCC/UFRJ/CBS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio harveyi;x__Vibrio harveyi 1DA3


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AM16-24


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hvidovre Hospital - University of Copenhagen


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: Monash University


ncbi_country: United Kingdom

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_strain_identifiers: CNCI 63

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: Spain

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Surrey


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Zymo Research Corporation


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_submitter: National Jewish Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;sb__Mycobacterium intracellulare subsp. chimaera


ncbi_country: Portugal: Cabril

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. UMC65

ncbi_submitter: University of Minho


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: intestine

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Bioprox


ncbi_country: Chile

ncbi_isolation_source: desert soil

ncbi_organism_name: Modestobacter altitudinis

ncbi_submitter: Nicolaus Copernicus University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Los Angeles; CA

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_country: Brazil

ncbi_isolation_source: feces (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Lacombe

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P141P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Vibrio rotiferianus

ncbi_submitter: National Autonomous University of Mexico


ncbi_country: Germany: Tanna

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Friedrich-Loeffler-Institute, Federal Research Institute for Animal Health


ncbi_isolation_source: Pus

ncbi_organism_name: Lacticaseibacillus zeae

ncbi_submitter: Food Industry Research and Development Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Clinical sample: urine

ncbi_submitter: The University of Melbourne


ncbi_country: Jordan

ncbi_isolation_source: liquorice

ncbi_organism_name: Cronobacter sakazakii


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Ignavibacterium sp.

ncbi_submitter: Ghent University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica

ncbi_organism_name: Nakamurella sp. PAMC28650

ncbi_submitter: Korea University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: South China Normal University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Herminiimonas glaciei

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Gaiellales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Asaia bogorensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Chryseosolibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang university


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Desulfobacterales bacterium


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pectobacterium sp. B1J-3

ncbi_submitter: Hainan University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Lake Washington

ncbi_organism_name: Methylobacter sp. UBA6712

ncbi_submitter: University of Queensland


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 179550

ncbi_submitter: IGS


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Schaalia odontolytica


ncbi_assembly_name: Rumen uncultured genome RUG14547

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Switzerland

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Arthrobacter sp. CAN_A1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ICE 428

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Hong Kong: Jardines Lookout

ncbi_isolation_source: polyester fabric recovered from leaf litter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Academia Sinica


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Ignavibacteria bacterium GWA2_35_8

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium GWA2_35_8


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: France

ncbi_isolation_source: Corse; leaf or steam petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Lapillicoccus sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- KT4_bin-223

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Italy

ncbi_isolation_source: peritoneal fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: China: Zhejiang

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_organism_name: Yersinia sp. (in: enterobacteria)

ncbi_submitter: National Center of Infectious and Parasitic Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__unclassified Yersinia (in: enterobacteria);s__Yersinia sp. (in: enterobacteria)


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Flavonifractor plautii


ncbi_country: Japan

ncbi_organism_name: Blautia parvula

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolate: YS river water

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lamb meat

ncbi_organism_name: Clostridium gasigenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: PatientJ

ncbi_submitter: California Department of Public Health


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: China: Luzhou

ncbi_submitter: Affiliated Hospital of Southwest Medical University


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hartford;x__Salmonella enterica subsp. enterica serovar Hartford str. CFSAN001075


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: BGI


ncbi_country: China: Guangdong

ncbi_isolation_source: forest soil

ncbi_organism_name: Novosphingobium silvae

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: Egypt: Ismailia; El-Kasasin

ncbi_isolation_source: root nodules

ncbi_organism_name: Klebsiella grimontii

ncbi_strain_identifiers: FR 21

ncbi_submitter: msa univeristy


ncbi_country: Poland: Warszawa

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: University of Vienna


ncbi_country: Germany: Luebeck

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum

ncbi_organism_name: Segatella buccae

ncbi_submitter: University of the Sunshine Coast


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University


ncbi_assembly_name: IMG-taxon 2599185210 annotated assembly

ncbi_organism_name: Rhizobium sp. NFACC06-2

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Terricaulis sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: unknown

ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: UNIVERSITY OF JENA


ncbi_country: Denmark: Jytland

ncbi_isolation_source: Rectum

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Aarhus University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Finland

ncbi_organism_name: Yersinia frederiksenii

ncbi_submitter: SC


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Niameybacter sp.


ncbi_country: Chile: Santiago

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Universidad de Concepcion


ncbi_country: India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Nigeria

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Cardiff University


ncbi_country: USA: FL; Ft. Lauderdale

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pseudoalteromonas sp. SMS1

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Flavobacterium arundinis

ncbi_submitter: Dongguk University


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: Liaocheng University


ncbi_organism_name: Rhizobium sp. BK661

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Streptomyces sp. NPDC006296

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2011EL-2290


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium OF12-5

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Leptospira sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Methylocystaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_name: freshwater MAG --- KTt_bin-2653

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Taean-gun

ncbi_isolation_source: forest soil

ncbi_organism_name: Streptomyces sp. AN091965

ncbi_submitter: Seoul National University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Savitribai Phule Pune University


ncbi_country: Russia: Saratov

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-374

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Flavipsychrobacter sp.

ncbi_strain_identifiers: new MAG-374

ncbi_submitter: Micoorganism


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Russia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Asticcacaulis;s__Asticcacaulis benevestitus;x__Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896


ncbi_organism_name: uncultured Mageeibacillus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Ilyobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Thailand: Songkhla

ncbi_submitter: Prince of Songkla University


ncbi_country: Taiwan

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_isolation_source: cold seep

ncbi_organism_name: Xinfangfangia sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Sudan

ncbi_organism_name: Vibrio cholerae V52

ncbi_submitter: Broad Institute


ncbi_organism_name: Bradyrhizobium sp. F1.2.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: VA

ncbi_isolation_source: Young Turkeys

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59841F

ncbi_submitter: FDA


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: hot dog

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Chile: Osorno

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Sao Paulo


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: feces

ncbi_organism_name: Yersinia enterocolitica


ncbi_country: USA: Georgia

ncbi_isolation_source: week R7 calf 170 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: actinobacterium SCGC AAA044-D11

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Pseudoalteromonas piscicida

ncbi_submitter: Bivalve Hatchery Health Consortium


ncbi_organism_name: Methylohalobius sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: ANSES


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Devosia litorisediminis

ncbi_submitter: University of East Anglia


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acetobacter sp.

ncbi_submitter: EMG


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Quzhou Hospital Affiliated to Wenzhou Medical University (Quzhou People's Hospital)


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Polaromonas sp.


ncbi_organism_name: Adlercreutzia equolifaciens


ncbi_organism_name: Coprococcus sp.


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Bangladesh

ncbi_isolation_source: milk of a mastitic cow

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: throat

ncbi_submitter: SRCAMB


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces glebosus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Japan

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Yonsei University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Puerto Rico: Maunabo

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of Bern


ncbi_organism_name: Enterococcus faecium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Oligosphaera ethanolica

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia

ncbi_isolation_source: Troups Creek Wetland

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Monash University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Acidimicrobiia bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Mobiluncus massiliensis

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Alaska; Fairbanks

ncbi_organism_name: Pseudomonas sp. TH04

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium GWA2_55_82


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bifidobacterium asteroides

ncbi_submitter: EMG


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fidelibacterota bacterium UBA5683

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA5683


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: University of Calgary


ncbi_country: Australia: south east Tasmania

ncbi_isolation_source: gastrointestinal mucosa

ncbi_organism_name: Aliivibrio sp. S4TY2

ncbi_submitter: University Of Tasmania, Tasmania Inst Agriculture


ncbi_organism_name: Xylanibacter rodentium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Negativicutes bacterium

ncbi_submitter: Hospital Sirio-Libanes


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_country: Mexico: Huitzilac; Morelos

ncbi_isolation_source: fermented pulque

ncbi_organism_name: Leuconostoc mesenteroides P45

ncbi_submitter: Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico


ncbi_organism_name: Streptomyces sp. bgisy027

ncbi_submitter: BGI Research


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Kingella kingae

ncbi_strain_identifiers: PYHERBlood

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hoeflea sp. AS16

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: uncultured Corynebacterium sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: gut of vertebrate mammal

ncbi_organism_name: Erysipelotrichaceae bacterium UBA3379


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Italy: Province of Bologna

ncbi_organism_name: Campylobacter vulpis

ncbi_submitter: C. vulpis


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Capnocytophaga granulosa

ncbi_submitter: EMG


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: China: Jiangxi

ncbi_organism_name: Acinetobacter sp. YH12057

ncbi_submitter: South China Agricultural University


ncbi_country: USA

ncbi_isolation_source: Tissues

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Singapore

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangdong Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: University of Bern


ncbi_organism_name: Faecalibaculum rodentium


ncbi_assembly_name: Rumen uncultured genome RUG11043

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: not provided

ncbi_organism_name: Streptococcus anginosus


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_organism_name: Cellulophaga tyrosinoxydans


ncbi_country: United Kingdom: England

ncbi_isolate: Invasive disease

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Invasive disease;BSAC_bs192

ncbi_submitter: University of Sheffield


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1645 from squamous cell carcinomas patient MST030

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: University of Queensland


ncbi_isolation_source: Skin

ncbi_submitter: SC