ncbi_country: USA: Roseville; MN

ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: DOE Joint Genome Institute


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA: Rifle; CO

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Omnitrophica WOR_2 bacterium GWC2_45_7

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium GWC2_45_7


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Toho University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ireland

ncbi_isolation_source: Poultry/Soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Pakistan

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National University of Sciences & Technology


ncbi_organism_name: Candidatus Brocadia sapporoensis

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__Candidatus Brocadia sapporoensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__Candidatus Brocadia sapporoensis


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_country: China

ncbi_organism_name: Salinibacterium sp. ZJ450

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Beijing

ncbi_isolation_source: Botanical garden soil

ncbi_organism_name: Pseudomonas sp. USTB-Z

ncbi_strain_identifiers: USTB-Z

ncbi_submitter: University of Science and Technology Beijing


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_submitter: Adelaide Medical School


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterobacter cloacae complex sp. SHL015

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. SHL015


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Hoeflea sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Yangtze University


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Pelagibacter sp. HIMB1593

ncbi_submitter: Hawaii Institute of Marine Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. HIMB1593


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: freshwater MAG --- Loc090721-7m_bin-155

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Netherlands

ncbi_isolation_source: Primary rapid sand filter

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Allorhizobium taibaishanense

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Alteromonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 10 to 15cm

ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Northeastern University


ncbi_country: South Korea: Gunsan

ncbi_isolation_source: root

ncbi_organism_name: Flavobacterium anhuiense

ncbi_refseq_category: reference genome

ncbi_submitter: Korea university


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Nagoya University


ncbi_organism_name: Escherichia coli


ncbi_submitter: China Agricultural University


ncbi_organism_name: Terriglobus sp. ADX1

ncbi_submitter: Stellenbosch University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_country: Poland: farmland in Jasienowka

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: University of Bialystok


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae UCI 44

ncbi_strain_identifiers: UCI 44

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae UCI 44


ncbi_country: USA: MN

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Citrobacter portucalensis


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_country: USA

ncbi_organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens

ncbi_strain_identifiers: CFBP 3417

ncbi_submitter: University of Tehran


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_64 WWTPs effluent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Microcoleus sp. SU_5_3

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Dermacoccus sp. UBA4756

ncbi_submitter: University of Queensland


ncbi_country: China: Tibet

ncbi_isolation_source: Sediment

ncbi_organism_name: Thermus thalpophilus

ncbi_strain_identifiers: SYSU G00506

ncbi_submitter: School of Life Science


ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: freshwater

ncbi_organism_name: Synechococcales bacterium UBA8138


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_country: Portugal

ncbi_organism_name: Serratia sp. M24T3

ncbi_submitter: University of Coimbra - Faculty of Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. M24T3


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Daejeonella sp.

ncbi_submitter: mBioClim


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Yunnan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Flavobacterium sp. Arc2

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: Fujian Normal University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Actinomycetaceae bacterium


ncbi_organism_name: Salmonella sp. LSP 48/12

ncbi_submitter: University of Oviedo


ncbi_country: South Korea

ncbi_isolation_source: Meju

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chung-Ang university


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-1565

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: vagina swab from a perinatal mother

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Hunter College of City University of New York


ncbi_country: Austria

ncbi_isolation_source: joint

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: Norway: Viken

ncbi_isolation_source: Silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Pelagimonas sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: The REHAB Consortium


ncbi_assembly_name: IMG-taxon 2695420918 annotated assembly

ncbi_organism_name: Burkholderia sp. GAS332

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Psychrobacter okhotskensis

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganism and Cell Cultures GmbH


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Clostridium sulfidigenes


ncbi_country: South Korea: Geumsan

ncbi_isolation_source: Rhizoplane

ncbi_organism_name: Streptomyces panaciradicis

ncbi_submitter: Kunming University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0810S

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_assembly_level: Chromosome

ncbi_country: China: Guangzhou

ncbi_isolation_source: urine from cystostomy

ncbi_submitter: Peking University People’s Hospital


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Treponema vincentii

ncbi_strain_identifiers: OMZ 802

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Ackermann

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Brigham Young University


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Malaya


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nitrospina sp.


ncbi_organism_name: Candidatus Cloacimonas acidaminovorans

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__Candidatus Cloacimonas acidaminovorans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__Candidatus Cloacimonas acidaminovorans


ncbi_country: Canada: Montreal

ncbi_submitter: Universite Laval


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020052216


ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces sp. SR-10

ncbi_submitter: Instituto Politecnico Nacional


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bifidobacterium breve


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Phocaeicola plebeius


ncbi_organism_name: Escherichia coli

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Leptothermofonsia sp. ETS-13

ncbi_submitter: University of Padova


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: freshwater MAG --- LJ-3-9m_bin-586

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Comenius University Science Park


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: MN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Segniliparus rugosus ATCC BAA-974

ncbi_strain_identifiers: ATCC BAA-974

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_organism_name: Bradyrhizobium japonicum CCBAU 15618

ncbi_strain_identifiers: CCBAU 15618

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Greifswald

ncbi_organism_name: Candidatus Peribacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;x__unclassified Candidatus Peribacteraceae;s__Candidatus Peribacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. BY32LC

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BY32LC


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Herbaspirillum sp. Sphag64

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_strain_identifiers: BD

ncbi_submitter: Chungnam National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacteroides;s__Mycobacteroides abscessus;sb__Mycobacteroides abscessus subsp. bolletii;x__Mycobacteroides abscessus subsp. bolletii BD


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_country: Taiwan: Kaohsiung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Health Research Institutes


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Toombs Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: Ukraine: Kiev

ncbi_isolation_source: Kombucha multimicrobial community exposed to Mars-like environment (sample carrier at the ISS)

ncbi_organism_name: Komagataeibacter rhaeticus

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: Taiwan

ncbi_isolation_source: Sputum; children 3 to 6 years

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Desantisiibacteriota;s__Candidatus Desantisbacteria bacterium CG02_land_8_20_14_3_00_49_13


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: CAU


ncbi_strain_identifiers: Fiocruz LV4152

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV4152


ncbi_organism_name: Klebsiella sp. JB_Kp025

ncbi_submitter: Max Rubner-Institut


ncbi_country: China: Shanghai

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Panjin

ncbi_organism_name: Cellulosimicrobium terreum

ncbi_submitter: Dalian University of Technology


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB56

ncbi_submitter: Soochow University


ncbi_organism_name: Streptomyces sp. NPDC013953

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: SC


ncbi_strain_identifiers: Gauthier

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;f__Treponemataceae;g__Treponema;s__Treponema pallidum;sb__Treponema pallidum subsp. pertenue;x__Treponema pallidum subsp. pertenue str. Gauthier


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Hellea sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Canada: Lunenberg County; NS

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Germany

ncbi_isolation_source: honey

ncbi_organism_name: Parasaccharibacter sp. TMW 2.1891

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: USA: Tennessee

ncbi_isolation_source: root

ncbi_organism_name: Variovorax sp. CF313

ncbi_submitter: Oak Ridge National Lab


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Netherlands

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolate: metabat2_pooled_metaflye.339 MAG

ncbi_organism_name: uncultured Blautia sp.

ncbi_strain_identifiers: metabat2_pooled_metaflye.339 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: Muhimbili University of Health and Allied Sciences


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- AM_bin-0508

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium


ncbi_country: Japan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: gut

ncbi_organism_name: Selenomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_submitter: FDA/CFSAN


gtdb_type_species_of_genus: t

ncbi_country: China

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Ventricola gallistercoris

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;s__Candidatus Ventricola gallistercoris


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: seawater

ncbi_organism_name: Flavivirga jejuensis

ncbi_submitter: Korea Institute of Ocean Science & Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Gaza Strip

ncbi_isolation_source: urine

ncbi_submitter: Justus-Liebig University


ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Geopsychrobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: UC Davis


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Liaocheng university


ncbi_country: USA: WA

ncbi_organism_name: Granulicatella sp. 572.rep1_STHE

ncbi_submitter: University of Washington


ncbi_country: Netherlands: Groningen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: unverisity medical center groningen


ncbi_country: Malaysia: Segamat

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFMG


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA: New York

ncbi_isolation_source: Raw liquid milk silo

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cornell University


ncbi_country: China: Wenchang

ncbi_isolation_source: estuarine mud [ENVO:00002160]

ncbi_organism_name: Paenibacillus sp. HB172176

ncbi_submitter: Hainan Tropical Ocean University


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. BRX10-6

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Vibrio profundum

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Chirstian Medical College


ncbi_organism_name: Microlunatus sp. GCM10028923

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Wilmar International Limited


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Thiohalomonadaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: MNNG mutagenesis derived mutant of the parent strain NUB36

ncbi_organism_name: Parageobacillus genomosp. 1

ncbi_submitter: Emory University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Lelliottia amnigena

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Erysipelotrichaceae bacterium


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Prevotella dentalis DSM 3688

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella dentalis;x__Prevotella dentalis DSM 3688


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Megasphaera sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Canada: Guelph

ncbi_isolation_source: paw

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: France

ncbi_isolation_source: Finger abcess

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: USA: Tennessee

ncbi_isolation_source: blood

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_assembly_name: freshwater MAG --- E5_bin-145

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: not known


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolate: metabat2_XCR1_HOM_7868_bwa.92 MAG

ncbi_organism_name: Candidatus Coprenecus pullicola

ncbi_strain_identifiers: metabat2_XCR1_HOM_7868_bwa.92 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;x__Rikenellaceae incertae sedis;g__Candidatus Coprenecus;s__Candidatus Coprenecus pullicola


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: stool

ncbi_submitter: Muenster university hospital, University of Muenster,


ncbi_country: Canada: Alberta

ncbi_isolation_source: bovine heart

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_country: China: Sichuan

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: China: Zigong

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: Chardonnay

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_isolation_source: jejunum

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Lachnobacterium sp.

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: India: Andhra Pradesh

ncbi_organism_name: Labrys okinawensis

ncbi_submitter: University of Hyderabad


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Russia: Kamchatka

ncbi_isolation_source: Kaskadny hot spring; Kamchatka; Russia

ncbi_organism_name: Aceticella autotrophica

ncbi_submitter: National Research Center "Kurchatov Institute"


ncbi_organism_name: uncultured Simkaniaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: WA

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: University of Washington


ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_organism_name: Turicimonas muris


ncbi_country: Denmark

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_isolation_source: raw milk for cow(Bos taurus)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Meiji Co., Ltd


ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Litoreibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Coriobacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_assembly_name: freshwater MAG --- Umea_bin-09941

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Icahn School of Medicine


ncbi_country: Turkey

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces anatolicus

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Catonella sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Jilin

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Nanchang

ncbi_isolation_source: Poyang Lake

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_submitter: the hong kong university of science and technology


ncbi_country: Taiwan: Taian hot springs; Miaoli

ncbi_isolation_source: water

ncbi_organism_name: Thermosynechococcus sp. B0

ncbi_submitter: Academia Sinica


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: Aquisalimonadaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: ATCC29213 mutation

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shenzhen People Hospital


ncbi_country: China

ncbi_isolation_source: lignocellulose-rich soil

ncbi_organism_name: Citricoccus sp. NR2

ncbi_submitter: Nanjing University of Science and Technology


ncbi_isolate: Av-JP

ncbi_isolation_source: whole body of Armadillidium vulgare

ncbi_organism_name: Candidatus Hepatoplasma vulgare

ncbi_strain_identifiers: Av-JP

ncbi_submitter: Laboratory of Genome Science Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology

ncbi_taxonomy: d__Bacteria;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Candidatus Hepatoplasmataceae;g__Candidatus Hepatoplasma;s__Candidatus Hepatoplasma vulgare


ncbi_organism_name: Escherichia coli

ncbi_submitter: Carleton Univeristy


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Ascidiaceihabitans sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Australia: Orpheus Island

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Neobacillus pocheonensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Guangxi

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Brazil

ncbi_isolation_source: Chicken Meat

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Konstanz


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Phocaeicola sp.


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Manitoba


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Streptomyces coelicolor

ncbi_submitter: University of Strathclyde


ncbi_organism_name: Victivallales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus sp. 'calajunan'

ncbi_strain_identifiers: calajunan

ncbi_submitter: University of the Philippines Visayas, Miagao, Iloilo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 'calajunan'


ncbi_organism_name: Microbacterium sp. NPDC056736

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_assembly_name: freshwater MAG --- Ja1_bin-3476

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Dialister invisus

ncbi_submitter: EMG


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NBC_01244

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Germany

ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Florida

ncbi_isolation_source: Photos sp.

ncbi_organism_name: Ralstonia solanacearum P673

ncbi_submitter: University of FLorida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia solanacearum;x__Ralstonia solanacearum P673


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Jiangxi Agricultural University


ncbi_organism_name: Elusimicrobiota bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bacillus aerius

ncbi_submitter: Guangzhou University of Chinese Medicine


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing macro&micro-test Bio-Tech Co.Ltd


ncbi_submitter: Gennova Biopharmaceuticals Ltd


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Minnesota


ncbi_country: China: Laizhou

ncbi_isolation_source: Outpatient Department

ncbi_organism_name: Shewanella algae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Zunongwangia profunda

ncbi_submitter: University of Queensland


ncbi_isolation_source: oral cavity

ncbi_submitter: Washington University Genome Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;x__unclassified Capnocytophaga;s__Capnocytophaga sp. oral taxon 329;x__Capnocytophaga sp. oral taxon 329 str. F0087


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: feces

ncbi_organism_name: Romboutsia ilealis


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: EMG


ncbi_country: Russia: Tyumen region; lake shore Kumnylor

ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus cerastii

ncbi_strain_identifiers: IEGM 1243

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_organism_name: Pseudobutyrivibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: BGI


ncbi_country: China: Ningxia hui autonomous region

ncbi_isolation_source: desert sand

ncbi_organism_name: Blastococcus sp. CPCC 205250

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Erysipelotrichaceae bacterium AF98-31

ncbi_submitter: BGI-Shenzhen


ncbi_country: France:French Brittany

ncbi_isolation_source: patient clinical isolate

ncbi_submitter: Houston Methodist Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_country: USA: OH

ncbi_isolation_source: stool

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. 41578


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: University of Zurich


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Cotai Ecological Zones in Macao

ncbi_isolation_source: surface-sterilized bark

ncbi_organism_name: Mangrovicella endophytica


ncbi_country: Italy: Perugia

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: USA: Lubbock; TX

ncbi_isolation_source: indwelling urinary catheter

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Limnobacter sp.


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Lewinella sp.

ncbi_submitter: Palmer LTER


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: AMPLIFY consortium


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Methylophaga sp.

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: AMD

ncbi_organism_name: Acidiferrimicrobium sp. IK

ncbi_strain_identifiers: IK

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_country: USA: IA

ncbi_isolation_source: yolk

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_country: India: Pachmarhi

ncbi_isolation_source: hot spring

ncbi_organism_name: Tepidimonas taiwanensis

ncbi_submitter: IISER Bhopal


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprococcus sp.


ncbi_country: South Africa: Pretoria

ncbi_submitter: University of Pretoria


ncbi_country: Portugal: Grandola; Herdade da Barroca da Serra

ncbi_isolation_source: forest soil

ncbi_organism_name: Citrobacter gillenii

ncbi_submitter: Universidade do Minho


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Corynebacterium stationis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Proteus faecis

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Bern


ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_submitter: Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium CPR2


ncbi_organism_name: Kosakonia oryzae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Holophagales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Italy

ncbi_isolation_source: twig

ncbi_organism_name: Pseudomonas avellanae CRAFRUee3

ncbi_submitter: CRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romana


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Michigan

ncbi_organism_name: Pseudomonas syringae pv. apii

ncbi_strain_identifiers: ICMP 1657

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. apii


ncbi_country: Spain

ncbi_isolation_source: Hospital Universitario La Princesa (Madrid)

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: CNAG-CRG


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Boston College


ncbi_country: Australia

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Microbiological Diagnostic Unit


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: sink drain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Vibrio sp. GLN_1

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Pseudothermotoga sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Anaerolineales bacterium


ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Tenuifilaceae bacterium


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Novome Biotechnologies


ncbi_organism_name: Henriciella sp.


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Chattogram Veterinary and Animal Sciences University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Hospital Puerta del Mar


ncbi_organism_name: Streptomyces griseoincarnatus


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: uncultured bacterium


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_organism_name: Coraliomargaritaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Xanthobacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Helicobacter pylori SA210C

ncbi_submitter: MHH


ncbi_country: Germany

ncbi_isolation_source: udder acute mastitis

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: Poland: Warszawa

ncbi_isolation_source: bile

ncbi_organism_name: Pseudomonas kurunegalensis


ncbi_country: Japan

ncbi_isolation_source: Ixodes persulcatus cultured in BSK-II media

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: AMC (Amsterdam, The Netherlands) and CRIE (Moscow, Russia)


ncbi_organism_name: Burkholderia mallei JHU

ncbi_strain_identifiers: JHU

ncbi_submitter: TIGR


ncbi_isolation_source: feces

ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Iewduh; Shillong

ncbi_isolation_source: Retail pork

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Thailand: Nakhonratchasrima

ncbi_isolation_source: rectal swab

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_country: USA: Toombs Co.; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Hyphomonadaceae bacterium


ncbi_organism_name: Mycoplasmoides pneumoniae 309

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV3834

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV3834


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_assembly_name: IMG-taxon 2608642217 annotated assembly

ncbi_organism_name: Olsenella sp. KH1P3

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Shanghai

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Shanghai ocean university


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: CDC


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_submitter: Hainan University


ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: Okra_B UMBAC_00010

ncbi_submitter: UW-Madison


ncbi_organism_name: Burkholderia orbicola

ncbi_submitter: Kvitko Lab


ncbi_organism_name: Microbacterium sp. NPDC077391

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Anhui Province

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Denmark

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Kenya

ncbi_organism_name: Porphyromonadaceae bacterium UBA4671

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Enterorhabdus sp.

ncbi_submitter: EMG


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: cold seep

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_strain_identifiers: FT 92

ncbi_submitter: Spiez Laboratory


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_isolation_source: swine salami paste

ncbi_submitter: FDA


ncbi_country: South Korea

ncbi_organism_name: Sutterella faecalis

ncbi_submitter: korea research institute of bioscience and biotechnology


ncbi_country: USA: Massachusetts

ncbi_isolation_source: dental plaque

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: uncultured Mycobacterium sp.


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Medanensis;x__Leptospira interrogans serovar Medanensis str. L0887


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Hungary

ncbi_isolation_source: caecum domestic rabbit

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: New York

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_country: Italy: Molveno (TN)

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA: New York State

ncbi_isolation_source: kitchen

ncbi_organism_name: Acetobacter tropicalis

ncbi_submitter: Cornell University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Streptomyces sp. NPDC051219

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_organism_name: Amycolatopsis rubida

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Japan: Misasa; Tottori

ncbi_organism_name: Sphingomonas astaxanthinifaciens DSM 22298

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Michigan State University


ncbi_isolation_source: feces

ncbi_organism_name: Treponema sp. UBA6337

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: United Kingdom:Chester


ncbi_country: South Korea:Gyeongsangnam-do

ncbi_isolation_source: soil

ncbi_organism_name: Mycolicibacterium sp. YH-1

ncbi_submitter: Sangji university


ncbi_organism_name: Pseudomonas neuropathica

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Chicago

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Candidatus Avelusimicrobium fimicolum

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces canus

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Yokenella regensburgei

ncbi_submitter: China Agricultural University


ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_assembly_name: freshwater MAG --- AM-2014-D2_bin-440

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Australia: Newcastle

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp6 AA40

ncbi_isolation_source: meadow soil

ncbi_strain_identifiers: gp6 AA40

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Microcystis sp. BLCC-F209

ncbi_submitter: University of Florida


ncbi_organism_name: Sutterella sp.


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: USA: Michigan

ncbi_isolation_source: gut

ncbi_organism_name: Serratia fonticola

ncbi_submitter: Michigan State University


ncbi_country: Switzerland

ncbi_isolation_source: EFB infected honey bee larva

ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: throat

ncbi_organism_name: Burkholderia sp. AU16741

ncbi_submitter: University of Michigan


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: pig gut metagenome


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Japan: Toyama

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_country: Turkey: Diyarbakir; Sur

ncbi_isolation_source: physical

ncbi_submitter: Faculty of Veterinary Medicine, Ankara University (FVMAU)


ncbi_country: Canada: Aklavik; Northwest Territories

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: Thailand: Kon Kaen

ncbi_isolation_source: ascitic fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculty of Public Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_strain_identifiers: CI

ncbi_submitter: Georg-August-University Goettingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus cereus biovar anthracis str. CI


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: Brazil: Savana

ncbi_isolation_source: endophyte

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Federal University of Minas Gerais


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Czech Republic

ncbi_submitter: CEITEC VFU


ncbi_country: USA: MD

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0840

ncbi_submitter: Broad Institute


ncbi_country: Germany: Bavaria

ncbi_isolation_source: high oxygen packaged beef steak (+ 3 CD; spoiled)

ncbi_organism_name: Dellaglioa algida

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Morganella morganii

ncbi_submitter: Institut Pasteur


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence and no molasses

ncbi_organism_name: Devosia sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Rhizobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_assembly_name: freshwater MAG --- E2_bin-176

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Veillonella parvula

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EBI


ncbi_country: India

ncbi_isolation_source: Nosocomial

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: China: Zhejiang

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: stool sample from patient with hemolytic uremic syndrome (HUS)

ncbi_submitter: HPA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. H112180541


ncbi_country: USA

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Ukraine: Kyiv

ncbi_isolation_source: Rhizosphere of wheat

ncbi_organism_name: Pseudomonas lini

ncbi_submitter: University of Southern Mississippi


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Pathogenomics Lab/LAU


ncbi_assembly_name: freshwater MAG --- Umea1_bin-3273

ncbi_isolation_source: lake water


ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Roseburia sp.


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: ShandongCDC


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-305

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_strain_identifiers: new MAG-305

ncbi_submitter: Micoorganism

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Flavisolibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Brazil: Vicosa

ncbi_isolation_source: dairy goats with persistent mastitis before therapy with enrofloxacin

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: UFMG


ncbi_country: Japan

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Tokyo University of Marine Science and Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Arcobacter sp.

ncbi_submitter: University of Waterloo


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: SCOPE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: China: Guangdong; Shaoguan

ncbi_isolation_source: Copper Mine

ncbi_organism_name: Acidithiobacillus thiooxidans

ncbi_submitter: Central South University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Lysinibacillus sp. FSL P2-0066

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Lysinibacillus;x__unclassified Lysinibacillus;s__Lysinibacillus sp. FSL P2-0066


ncbi_country: Australia: Ipswitch

ncbi_isolation_source: Human Brain Tissue

ncbi_organism_name: Burkholderia pseudomallei MSHR840

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Marinomonas gallaica

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Mycoplasma sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Cyanophyceae cyanobacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Salmonella sp. SAL00671

ncbi_submitter: Zhejiang university


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA-COL

ncbi_submitter: KU Leuven


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Anoxybacillus sp. D401a

ncbi_submitter: Ankara University


ncbi_organism_name: uncultured Bordetella sp.


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Puniceicoccaceae bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_country: USA: New York City

ncbi_isolation_source: blood

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-222-05_S4_C1

ncbi_submitter: IGS


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Greece

ncbi_isolation_source: soil with decaying plant material

ncbi_organism_name: Stigmatella hybrida

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Rumen uncultured genome RUG12697

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Egypt

ncbi_submitter: USUHS


ncbi_country: Spain: Asturias

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Miami University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: IMG-taxon 2642422541 annotated assembly

ncbi_organism_name: Proteiniclasticum ruminis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: sheep gut metagenome


ncbi_country: Japan: Tokyo

ncbi_isolation_source: soil; campus of the University of Tokyo

ncbi_organism_name: Streptomyces noursei

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Lysinibacillus irui

ncbi_submitter: Universidade do Porto


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: VA

ncbi_organism_name: Corynebacterium xerosis

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Goucher College; Baltimore; Maryland

ncbi_isolation_source: skin mucus

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Goucher College


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis ATCC 12228

ncbi_submitter: BGI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruthenibacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG13994


ncbi_isolation_source: vagina

ncbi_organism_name: Arcanobacterium sp. S3PF19

ncbi_submitter: JCVI


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: India

ncbi_isolation_source: Ginger Powder

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000214


ncbi_organism_name: Candidatus Poriferihabitaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis BTB11-236

ncbi_submitter: Broad Institute