ncbi_assembly_name: freshwater MAG --- Umea2_bin-0360

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nitrospina sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Scybalocola faecigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum


ncbi_country: USA: Texas

ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: fecal grab

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_isolation_source: feces

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: USA: VA

ncbi_isolation_source: seagull

ncbi_submitter: FDA/CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Singapore


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


gtdb_representative: t

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Pre-slaughter chicken

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: Colombia: Medellin

ncbi_submitter: Universidad El Bosque


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_assembly_level: Complete Genome

ncbi_country: Viet Nam: Ho Chi Minh city

ncbi_isolation_source: blood

ncbi_submitter: Pasteur Institute in Ho Chi Minh City


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B054;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: China: Guangxi

ncbi_isolation_source: soil

ncbi_organism_name: Pseudooceanicola albus

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: BGMRC 2024

ncbi_submitter: Guangxi University of Chinese Medicine

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: internal organs

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: Iowa

ncbi_isolation_source: Cecum

ncbi_organism_name: Clostridium sp. MD294

ncbi_submitter: Broad Institute


ncbi_country: Belgium

ncbi_isolation_source: Vitamin B2 feed additive

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Sciensano


gtdb_type_species_of_genus: t

ncbi_organism_name: Thermomonospora curvata DSM 43183

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: The Women University Multan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Arachnia propionica


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Birmingham


ncbi_country: China: ShanDong

ncbi_isolation_source: activated sludge from sewage treatment plant

ncbi_organism_name: Flavobacterium odoriferum

ncbi_submitter: Shandong University


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 1

ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: University of Glasgow


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Hannover

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Hallella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- D14_bin-1320

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: SC

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 15

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea: Seoul

ncbi_isolation_source: doenjang-meju

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Chung-Ang university


ncbi_country: Bangladesh: Mymensingh

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Bangladesh Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Litorivicinaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Veillonella dispar

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_organism_name: Escherichia coli

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Thermodesulfovibrio sp.


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_isolate: SPRUCE 51

ncbi_organism_name: Candidatus Cybelea sp.

ncbi_strain_identifiers: SPRUCE 51

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_assembly_name: Rumen uncultured genome RUG14865

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Thailand: Nakhon Ratchasima

ncbi_isolation_source: Blood and CSF

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Boston College


ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: Taiwan

ncbi_isolation_source: human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Worthington


ncbi_isolation_source: tonsil swab

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Algeria

ncbi_isolation_source: nasal carriage

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China: Yunyang County; ChongQing Municipality

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis bovis CQ-W70

ncbi_submitter: ChongQing Animal Disease Prevention and Control Centre


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: tundra soil

ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: University of Helsinki


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: not provided

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: China

ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB33

ncbi_submitter: Soochow University


ncbi_country: USA

ncbi_organism_name: Bordetella bronchiseptica MBORD665

ncbi_submitter: JCVI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE141

ncbi_submitter: Broad Institute


ncbi_country: South Korea: Pyeongchang-gun

ncbi_organism_name: Pontibacter rufus

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: Methylocystis sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bartonella apis


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Microbacterium esteraromaticum

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Candidatus Sysuimicrobium calidum

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium calidum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium calidum


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anseongella ginsenosidimutans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Akkermansia sp. EB-AMDK43

ncbi_submitter: Enterobiome Inc.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Baltic Sea

ncbi_isolation_source: sea water

ncbi_organism_name: Erythrobacter sanguineus

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Glutamicibacter sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_isolation_source: urinary tract

ncbi_strain_identifiers: preta

ncbi_submitter: University of Sao Paulo


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Region Zealand


ncbi_organism_name: uncultured Selenomonas sp.


ncbi_country: USA: San Diego County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: Mexico: Lake Atexcac

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechococcus sp. ATX 2A4

ncbi_strain_identifiers: ATX 2A4

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Blautia sp.

ncbi_submitter: Cleveland Clinic


ncbi_submitter: WRAIR-Africa


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Erysipelotrichaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acutalibacter muris

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: not available


ncbi_organism_name: Cutibacterium modestum P08

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Faecalibaculum sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Guinea-Bissau

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: chicken breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. N4403


ncbi_assembly_level: Chromosome

ncbi_country: Trinidad and Tobago: Trinidad; Lopinot

ncbi_isolation_source: Lettuce Plant

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: The University of the West Indies


ncbi_country: Netherlands

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: WA

ncbi_organism_name: Actinomyces urogenitalis

ncbi_submitter: University of Washington


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangzhou

ncbi_submitter: South China Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Durham; NC

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Duke University


ncbi_organism_name: Salmonella sp. NW1071

ncbi_submitter: Sichuan University


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: China: Beijing

ncbi_organism_name: Segatella copri

ncbi_submitter: China CDC


ncbi_organism_name: Cellulosimicrobium sp. NPDC057862

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Salmonella sp. NW1153


ncbi_organism_name: uncultured Boseongicola sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University


ncbi_organism_name: Flavonifractor plautii


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Paraburkholderia sp. JPY465

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: (MIX) marine epipelagic mixed layer

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_isolate: Pseudomonas sp. Irchel s3h14

ncbi_organism_name: Pseudomonas sp. Irchel s3h14

ncbi_strain_identifiers: Pseudomonas sp. Irchel s3h14

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: SCOPE


ncbi_country: Denmark

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_submitter: BGI


ncbi_isolation_source: sediment

ncbi_organism_name: Shewanella indica

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: China

ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Prevotellaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Virgibacillus necropolis


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_assembly_name: freshwater MAG --- A-1_bin-193

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Oral Cavity

ncbi_organism_name: Streptococcus cristatus ATCC 51100

ncbi_submitter: SC


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA3332

ncbi_submitter: University of Queensland


ncbi_isolate: CWC 48

ncbi_isolation_source: Human

ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: CWC 48

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China: Guangxi

ncbi_isolation_source: leaves

ncbi_organism_name: Nocardioides sp. BGMRC 2183

ncbi_strain_identifiers: BGMRC 2183

ncbi_submitter: Guangxi University of Chinese Medicine


ncbi_country: Japan

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Toho University


ncbi_organism_name: Thioploca ingrica

ncbi_submitter: The Institute of Low Temperature Science, Hokkaido University


ncbi_country: USA: Pivers Island (Duke Marine Lab); NC

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Galway


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: river

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13471

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Costa Rica

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_assembly_name: Rumen uncultured genome RUG10808

ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Viet Nam

ncbi_isolation_source: Bronchial fluid

ncbi_organism_name: Burkholderia dolosa

ncbi_submitter: University of Science and Technology of Hanoi


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Queensland

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Collinsella bouchesdurhonensis

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- MJ130702B_bin-223

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Lachnospiraceae bacterium UBA7046

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_organism_name: Desulfobulbaceae bacterium UBA2775


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Mexico: Cuernavaca Morelos

ncbi_organism_name: Acinetobacter schindleri

ncbi_strain_identifiers: ACE

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_country: Canada: Ontario

ncbi_isolation_source: manure from farm

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S126-66713

ncbi_submitter: Zhejiang University


ncbi_country: Argentina

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Colorado State U


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Saudi Arabia: Al Wahbah crater

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus haynesii

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: Food Science and Technology Institute, Morinaga Milk Industry Co., Ltd

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis;sb__Bifidobacterium animalis subsp. lactis;x__Bifidobacterium animalis subsp. lactis ATCC 27536


ncbi_organism_name: Dyella jiangningensis

ncbi_strain_identifiers: GG

ncbi_submitter: Harbin Institue of Technology(Shenzhen)


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Chester


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: vegetable

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Peribacillus sp. 1P06PB

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Candidatus Methylumidiphilus sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Methylococcales;x__Methylococcales incertae sedis;g__Candidatus Methylumidiphilus;x__unclassified Candidatus Methylumidiphilus;s__Candidatus Methylumidiphilus sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Leyella stercorea

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Belgium: Lommel Field

ncbi_isolation_source: Roots

ncbi_organism_name: Microbacterium oxydans

ncbi_submitter: Austrian Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada

ncbi_isolation_source: environment

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Italy

ncbi_isolation_source: ready to eat food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Malaysia

ncbi_isolation_source: mucoid sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Malaya


ncbi_country: China: Shandong

ncbi_isolation_source: vaginal secretion

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Shandong University


ncbi_isolation_source: blood

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan

ncbi_isolation_source: indegeniously feremented milk product Dahi

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Quaid-i-Azam University Islamabad


ncbi_organism_name: Zeaxanthinibacter enoshimensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Italy: Polesella (RO)

ncbi_isolation_source: intestine content

ncbi_organism_name: Clostridium botulinum C/D

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Queensland


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: United Kingdom:England

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudomonadaceae bacterium UBA6597


ncbi_country: USA: NY

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: Belgium

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Malaysia: Pahang; Kuantan

ncbi_isolation_source: hospital ICU ward

ncbi_submitter: Universiti Malaysia Pahang


ncbi_organism_name: Mammaliicoccus vitulinus


ncbi_country: Uruguay

ncbi_organism_name: Coprothermobacter platensis DSM 11748

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Varibaculum cambriense

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Medical College of Yangzhou University


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Emticicia sp.

ncbi_submitter: EPFL


ncbi_organism_name: Peptostreptococcus stomatis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Prochlorococcus sp. MIT 1304

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of the Philippines Manila


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: SAR324 cluster bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: University of Surrey


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: acrll

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Paraglaciecola chathamensis

ncbi_submitter: University of Queensland


ncbi_country: Netherlands

ncbi_isolation_source: food

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: TIFN


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Abe hydrothermal plume 200m

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: India: Pune

ncbi_isolation_source: Pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Kushneria pakistanensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_country: China: Fujian

ncbi_isolation_source: paddy soil

ncbi_organism_name: Propionivibrio soli

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Blautia merdipullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: USA: WA

ncbi_organism_name: Cardiobacterium hominis

ncbi_submitter: University of Washington


ncbi_organism_name: Hyphomonadaceae bacterium


ncbi_assembly_name: freshwater MAG --- Umea1p2_bin-0019

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Schlesneria sp.

ncbi_submitter: BILS


ncbi_country: South Africa: Westen Cape

ncbi_isolation_source: Paediatrics (haematology)

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China: Zhangshu City; Jiangxi Province

ncbi_isolation_source: stool

ncbi_submitter: SCAU


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)


ncbi_country: Sudan

ncbi_organism_name: Xanthomonas citri pv. glycines

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. glycines

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: Pannonibacter indicus

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Saudi Arabia:Al-Ahsa

ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: University of Chicago


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI-Shenzhen


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Rhodospirillaceae bacterium UBA4468


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_submitter: Christian Medical College


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: fresh water lake sediment

ncbi_organism_name: Shewanella sp. MM_2022_3

ncbi_submitter: Aarhus University


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Colorado State U


ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Staphylococcus aureus LysK 1 2010

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus LysK 1 2010


ncbi_country: Japan

ncbi_isolation_source: human feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: France

ncbi_submitter: IRHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. phaseoli var. fuscans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG325

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_isolation_source: cave environment

ncbi_organism_name: Nocardioides speluncae

ncbi_strain_identifiers: YIM ART13

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Shewanella algae

ncbi_submitter: Toho University


ncbi_assembly_name: freshwater MAG --- Loc080925-5-5m_bin-0271

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Canada: Powell Lake South basin; British Columbia

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Dalhousie University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Mycoplasmopsis agassizii

ncbi_submitter: Institute of Microbiology


ncbi_country: India

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_strain_identifiers: WRC27_S 471MPC

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Bremen


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: uncultured Clavibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Tartu


ncbi_organism_name: Corynebacterium sp. KPL2861

ncbi_submitter: Baylor College of Medicine


ncbi_country: China: Harbin

ncbi_isolation_source: activated sludge sample

ncbi_organism_name: Pseudomonas psychrophila HA-4

ncbi_submitter: Harbin Institute of Technology


ncbi_assembly_name: Salmonella enterica CVM N50434 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_country: United Kingdom


ncbi_isolation_source: swab ear

ncbi_organism_name: Gulosibacter hominis

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Paucihalobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: EMG


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: liver

ncbi_organism_name: Mycolicibacterium farcinogenes

ncbi_submitter: Chulalongkorn University


ncbi_isolation_source: individually-maintained laboratory-adapted strain of PAO1 acquired from E.P. Greenberg; Univ. of Washington

ncbi_organism_name: Pseudomonas aeruginosa PAO1

ncbi_submitter: University of Maryland, Baltimore


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Chicago


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolate: metabat2_XCR1_HET_6730_bwa.44 MAG

ncbi_organism_name: Bacteroidales bacterium SW299

ncbi_strain_identifiers: metabat2_XCR1_HET_6730_bwa.44 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium SW299


ncbi_country: USA: Rochester; NY

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0889

ncbi_submitter: Broad Institute


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC091209

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Halanaerobium sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: freshwater MAG --- MJ110712A_bin-450

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Weissella soli

ncbi_strain_identifiers: CECT 7031

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Zurich


ncbi_country: China: jiangsxi

ncbi_isolation_source: rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Microbacterium sp. Beta

ncbi_strain_identifiers: Beta

ncbi_submitter: University of Trento


ncbi_country: USA

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Rickettsia massiliae MTU5

ncbi_submitter: CNRS


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Acetobacter lovaniensis


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: AATYP

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Pontivivens marinum

ncbi_submitter: EMG


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: Instituto Nacional de Salud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_country: USA:International Space Station; US Lab

ncbi_isolation_source: air

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Chloroflexales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal vent fluid; hydrothermal fluid

ncbi_organism_name: Hydrogenimonas cancrithermarum

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Science, Hokkaido University


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_country: China: Hohhot

ncbi_isolation_source: Sour horse milk

ncbi_submitter: university


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China

ncbi_isolation_source: subtropical molasses grass

ncbi_organism_name: Azospirillum melinis

ncbi_submitter: UFRGS


ncbi_isolation_source: Human (Sputum)

ncbi_organism_name: Mycobacterium sp. Marseille-P9652

ncbi_submitter: URMITE


ncbi_isolation_source: termite gut

ncbi_organism_name: Alistipes sp. UBA936

ncbi_submitter: University of Queensland


ncbi_isolation_source: food

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Inha University


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Dahi fermented milk product

ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Quaid-I-Azam University


ncbi_country: Spain

ncbi_isolation_source: Farm

ncbi_submitter: ITACYL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: China: Yantai

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella parvula

ncbi_submitter: University of California, Berkeley


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: Shandong University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Lutibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Italy: Perugia

ncbi_organism_name: Furfurilactobacillus milii

ncbi_submitter: University of Alberta


ncbi_country: China: Huizhou

ncbi_isolation_source: sputum

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: Sudan: Khartoum; Military Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_assembly_name: freshwater MAG --- A-4_bin-085

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: NHS Scotland

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC029554

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University of Bern


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Comenius University Science Park


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;x__unclassified Candidatus Krumholzibacteriota;s__Candidatus Krumholzibacteriota bacterium


ncbi_country: Puerto Rico: CEIBA

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: Nottingham

ncbi_organism_name: Neisseria mucosa

ncbi_strain_identifiers: B404;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Porphyromonas endodontalis

ncbi_submitter: EMG


ncbi_country: Ireland

ncbi_isolation_source: intestine

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Teagasc Food Research


ncbi_country: USA: Texas

ncbi_isolation_source: wound (left ankle)

ncbi_organism_name: Chimaeribacter arupi

ncbi_submitter: University of Utah


ncbi_isolation_source: intestinal content

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: ChinaCDC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut

ncbi_organism_name: Escherichia coli O16:H48

ncbi_submitter: National Microbiology Laboratory at Guelph


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: Australia

ncbi_isolation_source: goat feces

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: China: Zhejiang

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1255

ncbi_submitter: Broad Institute


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: liver

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Denmark: Capital Region of Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus oralis subsp. oralis

ncbi_submitter: Slagelse Hospital


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas karstica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Janibacter indicus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Prauserella flavalba

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Pseudoalteromonas spongiae

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Priestia megaterium


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Penn State


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: China: Hong Kong

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Thermus thermophilus

ncbi_submitter: Skolkovo Institute of Science and Technology


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG11460

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coprobacillaceae bacterium UN01-12pH3A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Brazil: Southeast

ncbi_isolation_source: bovine mastitis

ncbi_submitter: University of Campinas


ncbi_isolation_source: Faeces

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: The University of Queensland


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Stenotrophomonas sp.


ncbi_country: Nepal: Birendranagar in the Chitwan district

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhizosaccharibacter radicis

ncbi_submitter: Rajamangala University of Technology Isan


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Denmark: Odense NW

ncbi_isolation_source: activated sludge from OdNW_18-Q3-R42-56

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Netherlands: Utrecht

ncbi_organism_name: Candidatus Campylobacter infans

ncbi_submitter: Utrecht University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Aerophobota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aerophobota;s__Candidatus Aerophobota bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Mycolicibacterium porcinum

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_country: India: Puttaparthi; CTVS ICU

ncbi_isolation_source: Hospital Tap Water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sri Sathya Sai Institute of Higher Learning


ncbi_country: India

ncbi_isolation_source: Diarrhea

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Turkey: Istanbul

ncbi_isolation_source: Mucilage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Bursa Uludag University


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Loyola University Chicago


ncbi_country: Spain

ncbi_isolation_source: Lung swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Tibetan Plateau

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Cognataquiflexum nitidum

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Exiguobacterium indicum

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium indicum


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: EMG


ncbi_organism_name: Stenotrophomonas lactitubi

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: Canada: Alberta

ncbi_isolation_source: Coal cuttings from Coal bed Methane well site

ncbi_organism_name: Pseudomonas sp. CO183

ncbi_submitter: University of Calgary


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Yancheng

ncbi_isolation_source: sputum

ncbi_submitter: The second Affiliated Hospital of Soochow University


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: Washington University in St. Louis


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nagoya University


ncbi_organism_name: Segatella oulorum


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_submitter: Universidad politecnica de Madrid


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S35

ncbi_organism_name: [Clostridium] innocuum


ncbi_organism_name: Marispirochaeta sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Italy

ncbi_isolation_source: cervico-uterine swab

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Istituto Zooprofilattico di Puglia e Basilicata

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Insititute of microbilogy,Chinese Academy of Sciences


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: National University of Singapore


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Argentina

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Universidad Autonoma de Nayarit


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium freneyi

ncbi_submitter: US Food and Drug Administration


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M28112

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Kingella oralis ATCC 51147

ncbi_submitter: WUGSC


ncbi_country: Ukraine: eastern Crimea

ncbi_isolation_source: bubbling pool in the central crater-like structure of an active mud volcano

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_isolation_source: human gut

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Khon Kaen University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01993

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing University of Chinese Medicine


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: chicken caeca

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. K4405

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K4405


ncbi_organism_name: Turneriella sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Altibacter sp.

ncbi_submitter: EMG


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: estuary bay water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Enterococcus sp. C53

ncbi_submitter: Northwest A & F University


ncbi_organism_name: Bacillus cereus group sp. BCN159

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN159


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: uncultured Polyangiaceae bacterium


ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Chile

ncbi_isolation_source: activated sludge of kraft-pulp mill effluents

ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Universidad Tecnologica Metropolitana (UTEM)


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_submitter: Aalborg University


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis;x__Enterococcus faecalis ATCC 19433 = NBRC 100480


ncbi_organism_name: Bifidobacterium bifidum JCM 1254

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: South Korea: Sunchang

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Instituto de Quimica


ncbi_submitter: Leibniz Institute DSMZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Acetobacterium;s__Acetobacterium malicum;sb__Acetobacterium malicum subsp. dehalogenans;x__Acetobacterium malicum subsp. dehalogenans DSM 11527


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Auckland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Acidimicrobium ferrooxidans DSM 10331

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Ruminococcus sp. FC2018

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Oscillibacter sp. UBA6647

ncbi_submitter: University of Queensland


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Jilin Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Ethiopia: Tigray; Central Tigray

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Australia: Bundaberg

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: La Trobe University


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 4

ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: University of Glasgow

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: USA: TX

ncbi_isolation_source: feces parrot

ncbi_submitter: FDA/CFSAN


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Yuan's General Hospital


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA6851

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6851


ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: PA

ncbi_isolation_source: avian lung (Gallus gallus domesticus)


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Philippines

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: China: Guangdong; Zhaoqing

ncbi_isolation_source: air dust

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gudongella sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Mesorhizobium sp. Root157

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium GW2011_GWC2_41_21


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: human gut

ncbi_organism_name: Murimonas intestini

ncbi_submitter: EMG


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: United Kingdom:Scotland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: breast milk

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Swansea University


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_assembly_name: IMG-taxon 2700988683 annotated assembly

ncbi_organism_name: Fibrobacter sp. UWB12

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Pacific Ocean: Okinawa through

ncbi_organism_name: Methylococcaceae bacterium HT2

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: China: Guangzhou

ncbi_isolation_source: environment

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agriculture University


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: LNCC


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Selenomonas sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: USA: Iowa

ncbi_isolation_source: feedlot

ncbi_organism_name: Mannheimia haemolytica D153

ncbi_submitter: National Animal Disease Center


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01312

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01312


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH