ncbi_submitter: National Center of Infectious and Parasitic Diseases


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Nigeria

ncbi_genome_representation: full

ncbi_isolation_source: ear swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cepheid


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_submitter: University of Guelph


gtdb_representative: t

ncbi_organism_name: Streptomyces sp. NPDC006872

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia: Negeri Sembilan

ncbi_isolation_source: aquaculture pond

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: uncultured Solibaculum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Monash University


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: uncultured Bilophila sp.


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Shenzhen

ncbi_submitter: Nanshan Hospital of Guangdong Medical College, Shenzhen, China


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Halalkalibacterium halodurans

ncbi_submitter: University of Sao Paulo

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Bristol


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: India: Punjab

ncbi_isolation_source: Rice seed

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Staphylococcus aureus H50411

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Culicoidibacterales bacterium

ncbi_submitter: Sichuan University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_assembly_name: Rumen uncultured genome RUG208

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: India: Ankleshwar

ncbi_isolation_source: Soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Saurashtra University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_country: South Korea: Daegu

ncbi_organism_name: Flavobacterium sp. DG2-3

ncbi_submitter: Seoul Women's university


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hangzhou First People's Hospital


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Nomada goodeniana


ncbi_country: Italy: Florence

ncbi_organism_name: Streptomyces gardneri

ncbi_refseq_category: reference genome

ncbi_submitter: KAIST


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 45075_9

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Spain: Galicia

ncbi_isolation_source: tidal area

ncbi_organism_name: Yoonia sp. I 8.24

ncbi_submitter: „Ökologie, Physiologie und Molekularbiologie der Roseobacter-Gruppe: Aufbruch zu einem systembiologischen Verständnis einer global wichtigen Gruppe mariner Bakterien“

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Yoonia;x__unclassified Yoonia;s__Yoonia sp. I 8.24


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: EMG


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: Chicken meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: China: Fujian

ncbi_isolation_source: kaolin soil from mine tailing

ncbi_organism_name: Herbaspirillum aquaticum

ncbi_submitter: Fujian Normal University


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Tang lab


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Sphingomonas adhaesiva

ncbi_submitter: UNESP-FCAV


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Kitasatospora sp. RG8

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_country: Peru

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Osaka Instutute of Public Health


ncbi_organism_name: Photorhabdus laumondii

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: South Korea: Samcheok

ncbi_organism_name: Paucibacter sp. M5-1

ncbi_submitter: Chung-Ang university


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptomyces sp. NPDC002769

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: UANTW


ncbi_organism_name: Neobacillus mesonae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Tokyo Institute of Technology


ncbi_country: China: Huangfengping; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: South china normal university


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Urine

ncbi_submitter: marathon study consortium


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Michigan

ncbi_organism_name: Enterococcus faecium EnGen0189

ncbi_submitter: Broad Institute


ncbi_organism_name: Paenibacillus tundrae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Tanzania: Dar Es Salaam

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_assembly_name: Rumen uncultured genome RUG13758

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_isolation_source: marine phycosphere

ncbi_organism_name: Dasania phycosphaerae

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: USA

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans SF12

ncbi_submitter: Cornell University


ncbi_country: USA: Arizona

ncbi_isolation_source: lungs

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_country: Russia

ncbi_isolation_source: bioreactor

ncbi_organism_name: Acidomonas methanolica

ncbi_submitter: BIOFORTE-LAB


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes putredinis


ncbi_country: USA: University of Wisconsin Hospital

ncbi_organism_name: Enterococcus faecalis EnGen0406


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-1271

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: BILS


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_submitter: Research Network Zoonotic Infectious Diseases


ncbi_organism_name: Erwinia billingiae

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Clostridia bacterium


ncbi_country: Sri Lanka

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculty of Medicine, University of Colombo


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriales bacterium UBA3121

ncbi_submitter: University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_country: China: Nanchang

ncbi_isolation_source: Poyang Lake

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_organism_name: Bisgaard Taxon 45

ncbi_submitter: Statens Serum Institut


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas sp. B21-048

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_assembly_name: freshwater MAG --- Loc080925-5m_bin-0220

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China

ncbi_isolation_source: Out-of-house environment

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10025

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: EMG


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-255

ncbi_submitter: Broad Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Beckwithiibacteriota;s__Candidatus Beckwithbacteria bacterium RIFOXYD1_FULL_50_11


ncbi_organism_name: uncultured Erysipelotrichales bacterium


ncbi_country: Netherlands

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


gtdb_type_species_of_genus: t

ncbi_organism_name: Hydrogenobacter thermophilus TK-6

ncbi_submitter: The University of Tokyo

ncbi_type_material_designation: assembly from type material


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_submitter: University of Minnesota

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: coral

ncbi_organism_name: Ruegeria sp. R8_1

ncbi_submitter: University of Konstanz


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_name: freshwater MAG --- Umea2_bin-0420

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Nocardia sp. No.11

ncbi_submitter: Peking University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Anaeroplasmataceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_submitter: Tang lab


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolate: XDR-PA

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Planctomycetaceae bacterium UBA7309

ncbi_submitter: University of Queensland


ncbi_country: USA: Connecticut

ncbi_isolation_source: Ixodes scapularis tick isolate by feeding on SCID mouse and isolated from blood sample in BSK culture

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: AMC (Amsterdam, The Netherlands) and CRIE (Moscow, Russia)


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Paenibacillus taichungensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Arizona

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Carlos Chagas - Fiocruz Parana


ncbi_organism_name: Shewanella baltica

ncbi_submitter: Zhejiang Gongshang University


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Pseudoalteromonas sp. XMcav1-K

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Boston College


ncbi_organism_name: Photobacterium indicum

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Priestia megaterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human gut


ncbi_country: China: Guangdong

ncbi_isolation_source: wall

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: Alaska_E UMBAC_00008

ncbi_submitter: UW-Madison


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: EMG


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Comamonas sp. lk

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: China

ncbi_isolation_source: Gouqi Island sediment

ncbi_organism_name: Peteryoungia algae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Xanthobacteraceae bacterium


ncbi_submitter: University of Technology Sydney


ncbi_submitter: MRSN BI Team


ncbi_submitter: EBI


ncbi_country: Indonesia: Lake Toba

ncbi_isolation_source: spleen

ncbi_organism_name: Francisella orientalis str. Toba 04

ncbi_strain_identifiers: Toba 04

ncbi_submitter: University of Bergen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella orientalis;x__Francisella orientalis str. Toba 04


ncbi_country: Democratic Republic of the Congo

ncbi_isolation_source: human

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: EPFL


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Granulicella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Sandaracinaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 10251A

ncbi_submitter: University of Exeter


ncbi_country: Italy

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_02_FULL_49_34


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Breast milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_assembly_level: Chromosome

ncbi_country: USA

ncbi_isolation_source: airway from a patient with cystic fibrosis

ncbi_organism_name: Burkholderia dolosa PC543

ncbi_submitter: McMaster University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Russia: Samara

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Chlamydia gallinacea

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Netherlands

ncbi_isolation_source: bloodstream infection

ncbi_organism_name: Enterococcus faecium E1636

ncbi_submitter: Dept. of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands


ncbi_country: Chile

ncbi_organism_name: Campylobacter sp. CFSAN093246

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: WA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_country: Australia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Prevotella pectinovora


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Latilactobacillus sakei subsp. carnosus


ncbi_isolation_source: sputum (induced)

ncbi_organism_name: Rothia sp. HMSC072B03

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC072B03


ncbi_organism_name: Enterococcus sp. MSG4854

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Methylobacterium frigidaeris


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: WOUND/ABSCESS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Toho University


ncbi_country: China: Nanping City; Fujian Province

ncbi_isolation_source: stool

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: McGill University


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Clostridiales bacterium UBA5517

ncbi_submitter: University of Queensland


ncbi_isolation_source: nodule

ncbi_organism_name: Candidatus Frankia meridionalis

ncbi_submitter: CEBITEC


ncbi_organism_name: Burkholderia pseudomallei MSHR3964

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Zellenberg

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Kher Heng Leong


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centre for genomic regulation (CRG)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_organism_name: Rhabdochlamydiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Hongkong

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. BcHK140

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BcHK140


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Shanghai Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_submitter: South China Agricultural University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Allobaculum sp.


ncbi_organism_name: Pseudomonas putida


ncbi_organism_name: uncultured Peptoniphilaceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Escherichia coli O111:H8

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Desulfohalobiaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Granulicella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__environmental samples;s__uncultured candidatus Brocadiaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Acinetobacter sp. c1-l78

ncbi_submitter: China CDC


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Salmonella sp. NW390

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Terracidiphilus sp.


ncbi_organism_name: Pseudoduganella sp. R-32

ncbi_submitter: Iowa State University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Brisbane

ncbi_organism_name: Neglectibacter sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Oligoflexales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_organism_name: Campylobacter sp. 2457A

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Xiangtan

ncbi_submitter: University College London (UCL)


ncbi_country: France

ncbi_isolation_source: cheese rind

ncbi_organism_name: Psychrobacter sp. FME60

ncbi_submitter: INRA


ncbi_isolation_source: Minced meat

ncbi_submitter: Anses


ncbi_country: USA: California

ncbi_isolation_source: chicken

ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: USDA


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: epithelial cells

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: Oregon State University


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Germany:Rostock;Stover Acker

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Psychrobacillus sp. INOP01

ncbi_submitter: InnoSoilPhos


ncbi_isolation_source: lung

ncbi_organism_name: Campylobacter pinnipediorum subsp. pinnipediorum


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil

ncbi_isolation_source: Rio de Janeiro

ncbi_organism_name: Ensifer sp. BR816

ncbi_submitter: JGI


ncbi_organism_name: Brevibacillus brevis

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Burkholderia  cenocepacia BCC1562

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O118:H16;x__Escherichia coli O118:H16 str. 2009C-4446


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Fudan University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Neomicrothrix sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp.


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: University of Vienna


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: Switzerland

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium casei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Candidatus Deferrimicrobium sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__Candidatus Deferrimicrobium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__Candidatus Deferrimicrobium;x__unclassified Candidatus Deferrimicrobium;s__Candidatus Deferrimicrobium sp.


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Synechococcus sp. BS30m-G30

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Texas

ncbi_organism_name: Teichococcus cervicalis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany

ncbi_organism_name: Vibrio cincinnatiensis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Paraburkholderia atlantica


ncbi_organism_name: Kerstersia gyiorum


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Helmholtz Center Munich


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 2363

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolate: metabat2_coassembly_bwa.670 MAG

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.670 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Microbacterium algeriense

ncbi_submitter: BGI-Shenzhen


ncbi_country: South Korea

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_country: China

ncbi_isolation_source: Brassica rapa subsp. pekinensis

ncbi_submitter: CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CN10


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: uncultured Alcaligenaceae bacterium


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parvibacter sp.


ncbi_country: New Zealand

ncbi_submitter: Massey University


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ares Genetics


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Viborg

ncbi_isolation_source: activated sludge from Vibo_18-Q3-R45-57

ncbi_submitter: Aalborg University


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: France: Orsay

ncbi_isolation_source: Rotting Apple

ncbi_organism_name: Sphingobacterium paramultivorum


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Mexico: Tehuacan; Puebla

ncbi_isolation_source: semidesertic area with dry sandy soils; around 15 cm from the trunk of a peach tree (5 cm deep)

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_country: United Kingdom: Outwood

ncbi_isolation_source: Necrotic lesion of AOD affected tree

ncbi_organism_name: Brenneria goodwinii

ncbi_submitter: Bangor University


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_country: Australia: Melbourne

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Monash University


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: KOlimastIR


ncbi_country: Kenya

ncbi_organism_name: Clostridiales bacterium UBA5888

ncbi_submitter: University of Queensland


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Salinisphaerales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: China: Shaanxi

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Desulfurivibrio sp.

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_country: China

ncbi_isolation_source: duck organ

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Berta


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Japan:Ibaraki; Tsukuba city

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella lacticifex

ncbi_submitter: Advanced Analysis Center, National Agriculture and Food Research Organization


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: beetle eggs

ncbi_organism_name: Burkholderia gladioli

ncbi_strain_identifiers: Lv-StA

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: The Ohio State University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Butyrivibrio sp. NC3005

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mycobacterium novum

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lentisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thermodesulfobacteriota bacterium


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: University of Plovdiv


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Qingdao Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Fredinandcohnia onubensis

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: University of Florida


ncbi_isolation_source: soil

ncbi_organism_name: Micrococcus flavus

ncbi_submitter: Food Industry Research and Development Institute


ncbi_country: USA: Mill Valley; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Spirulinaceae cyanobacterium RM2_2_10

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: Shenzhen Research Institute, The Chinese University of Hong Kong


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: USA: MS

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR3586

ncbi_submitter: Broad Institute


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: National Medicines Institute


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Alloscybalousia;s__Candidatus Alloscybalousia intestinigallinarum


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_assembly_name: freshwater MAG --- MJ120531B_bin-005

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Lachnospiraceae bacterium UBA1766


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: slurry solids

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Nottingham


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: United Kingdom: London

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis subsp. hominis

ncbi_submitter: Modernising Medical Microbiology


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of California, Santa Barbara

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: Ileo-caecum


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_assembly_name: Rumen uncultured genome RUG14432

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Spain

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Zhejiang university


ncbi_country: Australia: Bundaberg

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: La Trobe University


ncbi_country: Australia: Kalgoorlie

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: Netherlands

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- C-4_bin-103

ncbi_isolation_source: pond

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: RMIT University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: nasopharynx sample from patient HS-CRS-17

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_isolation_source: stool

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: IMGAG (Universitaetsklinikum Tuebingen)


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Malaysia: Dusun Tua

ncbi_isolation_source: hot spring

ncbi_organism_name: Anoxybacillus gonensis

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Laboratorio de Investigacion en Agentes Antibacterianos


ncbi_organism_name: Candidatus Alistipes stercoripullorum

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas fulva


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Wolbachia endosymbiont of Pentidionis agamae

ncbi_strain_identifiers: wPaga

ncbi_submitter: University of Liverpool


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: CAU


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_country: Ghana: Pakro

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Phormidesmis sp. RL_2_1

ncbi_submitter: University of Wisconsin, Madison


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Poland: Wroclaw

ncbi_isolation_source: clinical

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wroclaw


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: soil samples collected at a site near a petroleum refinery

ncbi_organism_name: Stutzerimonas stutzeri XLDN-R

ncbi_strain_identifiers: XLDN-R

ncbi_submitter: State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;x__Stutzerimonas stutzeri group;x__Stutzerimonas stutzeri subgroup;s__Stutzerimonas stutzeri;x__Stutzerimonas stutzeri XLDN-R


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Opitutia bacterium UBA3151

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA3151


ncbi_submitter: Tarim University


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus COAS6020

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Leifsonia sp.

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom: London

ncbi_isolation_source: sputum

ncbi_submitter: Imperial College London


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_organism_name: Campylobacter coli


ncbi_country: USA: MD

ncbi_isolation_source: Oregano

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Rumen uncultured genome RUG11500

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Jeonbuk National University


ncbi_country: USA: Illinois; Chicago; Lake Michigan

ncbi_isolation_source: isolated from littorial waters of Lake Michigan that had been stored at 4 degrees C for one year

ncbi_organism_name: Caulobacter sp. B11

ncbi_submitter: The University of Chicago


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: IFPEN


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_country: USA

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: uncultured Acidiluteibacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NBC_00063

ncbi_submitter: BGI Research


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Candidatus Saccharimonadales bacterium


ncbi_organism_name: Leifsonia aquatica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium


ncbi_organism_name: Marinibaculum pumilum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Streptomyces sp. NPDC056224


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang University School of Medicine


ncbi_assembly_name: barcode14_DH5a-AziR--BcPc-COL FM3 C3 16hr CCT 25-7

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: uncultured Synergistaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Auburn University


ncbi_isolate: isolate

ncbi_isolation_source: Urine

ncbi_strain_identifiers: isolate

ncbi_submitter: Dr. Sarita Mohapatra, Department of Microbiology, All Indian Institute of Medical Sciences


ncbi_organism_name: Streptomyces sp. NPDC088745


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain

ncbi_isolation_source: trachea

ncbi_organism_name: Mycoplasma bradburyae

ncbi_submitter: GD Animal Health


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Peptostreptococcaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Milan


ncbi_organism_name: Microbispora rosea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Coprococcus sp.


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Prince of Songkla University


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Microbacteriaceae bacterium UBA6152

ncbi_submitter: University of Queensland


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia faecis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Thauera sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: South Korea

ncbi_organism_name: Kaistia adipata DSM 17808

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces sp. NPDC093085


ncbi_organism_name: Mycobacterium sp. WY10

ncbi_submitter: Zhejiang University


ncbi_assembly_name: LM09-01092 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: pond water

ncbi_organism_name: Asticcacaulis excentricus CB 48

ncbi_strain_identifiers: CS 48

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Klebsiella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Prevotella sp. CAG:732

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Alloprevotella sp.

ncbi_submitter: EMG


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: USA:Woods Hole

ncbi_isolation_source: coastal seawater collected at Woods Hole; MA

ncbi_organism_name: Synechococcus sp. WH 8101

ncbi_submitter: University of Delaware


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Opitutaceae bacterium


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Mesorhizobium sp. L103C120A0

ncbi_submitter: University of Southern California


ncbi_organism_name: Terrimesophilobacter sp.


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 14

ncbi_submitter: Lebanese American University


ncbi_isolation_source: maybe soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Enhygromyxa sp.


ncbi_assembly_name: Rumen uncultured genome RUG12841

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Streptomyces salyersiae

ncbi_submitter: Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_country: China: The First Affiliated Hospital of Zhejiang University

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: State Key Laboratory for Diagnosis and Treatment of Infectious Disease


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_assembly_name: IMG-taxon 2623620555 annotated assembly

ncbi_organism_name: Priestia megaterium

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Guangxi Academy of Agricultural Sciences


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northumbria University


ncbi_isolation_source: Colon

ncbi_organism_name: Adlercreutzia caecimuris


ncbi_country: USA

ncbi_isolation_source: Excreted bodily substance

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Tiphia femorata


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Antarctic krill

ncbi_organism_name: Psychrobacter proteolyticus

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Klebsiella oxytoca


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter coli

ncbi_submitter: FDA


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Nanjing Institute for Food and Drug Control


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Portugal

ncbi_isolation_source: raw wastewater

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidade Catolica Portuguesa


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Bristol


ncbi_isolation_source: WOUND/ABSCESS

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: USA: Washington state

ncbi_isolation_source: stool/fecal sample

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Pelobacter sp. UBA6093

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Indonesia: Bogor

ncbi_isolation_source: Chicken Carcass; Kampung Chicken

ncbi_submitter: IPB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: SponGES


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-0230

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: BILS


ncbi_organism_name: Brucella suis 63/252

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom: Esthwaite Water; Lake District; Cumbria; England

ncbi_organism_name: Lyngbya sp. CCAP 1446/10

ncbi_submitter: University of Helsinki


ncbi_country: Russia: Izhevsk

ncbi_isolation_source: patient s blood plasma

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Central Research Institute for Epidemiology


ncbi_isolate: host faecal sample

ncbi_strain_identifiers: YE12;03;host faecal sample

ncbi_submitter: WTSI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;s__Yersinia enterocolitica;x__Yersinia enterocolitica (type O:3);x__Yersinia enterocolitica (type O:3) str. YE12/03


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NBC_01431

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. AF23-4AC

ncbi_submitter: BGI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Kasetsart University


ncbi_country: Australia

ncbi_organism_name: Burkholderia pseudomallei MSHR730

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: Ectopseudomonas guguanensis

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Enterococcus faecalis


ncbi_country: USA: New Hampshire; Manchester

ncbi_isolation_source: human-created freshwater pond with recirculation system

ncbi_organism_name: Cellulomonas hominis


ncbi_organism_name: Brucella abortus

ncbi_submitter: Ningxia Hui Autonomous Region Center for Disease Control and Prevention


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: bacterium 1XD42-1

ncbi_submitter: Chinese Academy of Science


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Brachybacterium sp. GCM10030252

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Bern


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: zhejiang university


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Su Dong


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx23033

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Odoribacter splanchnicus


ncbi_organism_name: Escherichia coli

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Shewanella sp.

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: France

ncbi_isolation_source: potato tubers

ncbi_organism_name: Streptomyces reticuliscabiei

ncbi_submitter: USDA/ARS/NCAUR


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Rothia sp.


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: United Kingdom: Cambridge

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: culture collection deposit

ncbi_organism_name: Streptomyces clavuligerus

ncbi_submitter: John Innes Centre


ncbi_country: Czech Republic: Brno

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_strain_identifiers: LDGmimi

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong CDC


ncbi_organism_name: Klebsiella sp. G21-3161

ncbi_submitter: Jeonbuk National University Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Nitrobacter sp. Nb-311A

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_country: USA: New York State

ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Cornell University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_country: Canada: British Columbia;Abbotsford

ncbi_isolation_source: irrigation ditch water

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Phycisphaerales bacterium UBA3160

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Sphingomonas sp. WKB10

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 1

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Austria:Vienna; General Hospital Vienna

ncbi_organism_name: Klebsiella pneumoniae IS43

ncbi_submitter: AIT


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Weihai

ncbi_isolation_source: coastal area

ncbi_organism_name: Marinagarivorans algicola

ncbi_submitter: Shandong University at Weihai


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Angelakisella massiliensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Colombia

ncbi_isolation_source: Potato soil

ncbi_organism_name: Clostridium sp. IBUN22A

ncbi_submitter: Universidad Nacional de Colombia


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Kobe Institute of Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: bacterium HR28

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Instituto de Investigaciones Biomedicas, UNAM


ncbi_country: Japan

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: wound

ncbi_organism_name: Serratia nevei

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Department of Clinical Laboratory, the Affiliated Suzhou Hospital of Nanjing Medical University


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: EMG


ncbi_organism_name: Victivallis vadensis

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Scybalenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Scybalenecus;s__Candidatus Scybalenecus sp.


ncbi_country: Australia

ncbi_isolation_source: ear

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Melbourne


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__environmental samples;s__uncultured Candidatus Neoarthromitus sp.


ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bifidobacterium bifidum


ncbi_organism_name: Raoultella scottii

ncbi_submitter: University of the West of England


ncbi_organism_name: Prevotella histicola


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: USA: Crew Resupply Vehicle

ncbi_isolation_source: CRV environmental surface

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Jiangsu

ncbi_isolation_source: soil

ncbi_organism_name: Advenella alkanexedens

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Weeksellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Panama

ncbi_organism_name: Mycobacterium tuberculosis PanR0202

ncbi_submitter: Texas A&M University


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Arcobacter sp.


ncbi_organism_name: Pedobacter sp. UYP1

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Human fecal samples

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 219

ncbi_organism_name: Staphylococcus arlettae

ncbi_strain_identifiers: SNUC 4426

ncbi_submitter: University of Calgary


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_submitter: University of Galway


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Salmonella sp. NW1089

ncbi_submitter: Sichuan University


ncbi_submitter: National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: Xcz 5

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Roseovarius sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Streptomyces galbus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_submitter: University of South Africa


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Universite de Limoges