ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;o__Candidatus Krumholzibacteriales;f__Candidatus Krumholzibacteriaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;o__Candidatus Krumholzibacteriales;f__Candidatus Krumholzibacteriaceae;x__unclassified Candidatus Krumholzibacteriaceae;s__Candidatus Krumholzibacteriaceae bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas at San Antonio


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Parvibacter sp.


ncbi_isolation_source: groundwater

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_level: Contig

ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Yosemite National Park; California

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


gtdb_representative: t

ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: SCOPE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Calgary

ncbi_isolation_source: chemostat inoculated with river sediment

ncbi_organism_name: Arenimonas sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: USA: Minnesota

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Minnesota


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_country: Canada

ncbi_submitter: IRHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. phaseoli var. fuscans


ncbi_organism_name: Nocardia salmonicida

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_country: USA

ncbi_isolation_source: enrichment culture inoculated with black band disease microbial mat

ncbi_organism_name: Oceanicaulis sp. BBD 1991-10

ncbi_submitter: University of Michigan


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_assembly_name: Rumen uncultured genome RUG14616

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France

ncbi_submitter: CHU de Bicetre


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_organism_name: Tepidisphaerales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA: Pittsburgh; PA

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Legionella genomosp. 1

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: Streptomyces clavifer


ncbi_country: United Kingdom: England

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: University of Liverpool


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_isolation_source: anaerobic digester

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium UBA3925


ncbi_assembly_level: Chromosome

ncbi_isolation_source: rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_isolation_source: derived from O395R

ncbi_organism_name: Vibrio cholerae O395

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Cognaticolwellia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1007

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: China: YunNan

ncbi_isolation_source: plant

ncbi_organism_name: Conexibacter sp. CPCC 205706

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Helicobacter sp. 13S00401-1

ncbi_submitter: Utrecht University


ncbi_country: Israel: Negev Desert

ncbi_isolate: NEG bin1

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: NEG bin1

ncbi_submitter: Monash University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Providencia rettgeri

ncbi_strain_identifiers: FDAARGOS 1449

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Yunnan Province

ncbi_isolation_source: river water

ncbi_organism_name: Flectobacillus longus

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Pseudorhodobacter antarcticus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_isolation_source: Colon

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Florence

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: Kenya: Bogoria

ncbi_isolation_source: dry sediments

ncbi_organism_name: Salipaludibacillus agaradhaerens

ncbi_submitter: Capacity building initiative between the Group of Prof. Rolf Daniel and the Department of Biological Sciences, University of Embu, Kenya


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: Russia

ncbi_isolation_source: not known


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The Helmholtz Centre of Environmental Research


ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Bacillus safensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bartonella sp. AP152HLJHH

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: National Microbiology Laboratory, Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus constellatus;sb__Streptococcus constellatus subsp. pharyngis;x__Streptococcus constellatus subsp. pharyngis C818


ncbi_organism_name: Saccharospirillum sp.

ncbi_submitter: University of Southern California


ncbi_country: Russia: Saratov

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: CAU


ncbi_isolation_source: jejunum

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy

ncbi_isolation_source: fallow deer

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Australia

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bariatricus sp. TF06-38A

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_organism_name: Hoeflea prorocentri

ncbi_refseq_category: reference genome

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University

ncbi_type_material_designation: assembly from type material


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: French Guiana

ncbi_organism_name: Shigella sonnei


ncbi_country: China: Fujian

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA

ncbi_isolation_source: activated sludge from wastewater treatment plant

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Spain: Bilbao

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA: NE

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Mariniphaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Cognatishimia sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: National Taiwan University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Wuzhishan Nature Reserve; Hainan

ncbi_isolation_source: root

ncbi_organism_name: Streptomyces sp. 35G-GA-8

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_assembly_name: ENTB

ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: Biotechnology and Biomedicine Centre of the Academy of Science and Charles University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: Invasive

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolate: Urine

ncbi_strain_identifiers: O17:H18;STw 69;STp 3;NILS46:D;Urine

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Caldilinea sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing macro&micro-test Bio-Tech Co.Ltd


ncbi_country: Thailand: Phitsanulok

ncbi_submitter: Cardiff University


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: Guangxi University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Pseudomonas luteola NBRC 103146

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolate: Prospectively collected (P)

ncbi_isolation_source: Blood

ncbi_strain_identifiers: Prospectively collected (P)

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: This genome was reconstructed from an aerobic pyrene degrading enrichment culture grown from soil-compost microcosms; as described in Adam I.K. et al.; under review. An uncontaminated and unfertilized agricultural soil (Ap horizon of a Haplic Chernozem) of the Static Fertilization Experiment Bad Lauchstadt (Germany) was supplemented with mature compost (Bio-Komp SAS Gmbh; Weizenfels; Germany) for biostimulation; the compost consisted of a mixture of vegetable and animal organic waste. Two stable enrichment cultures (UC1 and UC10) capable of total pyrene (spiked at a concentration of 100 mg/L) mineralization were obtained from the microscosm and shotgun sequenced (see Adam I.K. et al.; under review 2016).

ncbi_organism_name: uncultured Sphingopyxis sp.

ncbi_submitter: Genoscope CEA


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Synechococcus sp. SB0663_bin_10


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Yonsei University


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_strain_identifiers: acrns

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: rectal swab

ncbi_submitter: NISC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae KPNIH14


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Singapore

ncbi_isolation_source: environment

ncbi_organism_name: Chromobacterium violaceum

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: EMG


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Prevotellaceae bacterium UBA3296


ncbi_country: USA: University of Georgia in Athens; GA

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; hindgut

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium OttesenSCG-928-K22


ncbi_isolation_source: other

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Michigan, Ann Arbor


ncbi_country: India: Pune

ncbi_isolation_source: stool material

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: National Centre for Cell Science Pune


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Stenotrophomonas geniculata


ncbi_organism_name: Blautia stercoris

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Rizhao

ncbi_isolation_source: East China Sea

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus COAS6059


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Canada: British Columbia;Surrey

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0886


ncbi_country: USA

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-6 day 513

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: The Ohio State University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium CG1_02_37_22


ncbi_country: Italy: Lecco

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: The James Hutton Institute


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient sediment

ncbi_organism_name: Ruegeria sp. HKCCA4707

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Hallerella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Durham; NC

ncbi_isolation_source: catheterized bladder urine

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: University of Alabama in Huntsville


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agricultural University


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_country: United Kingdom

ncbi_isolation_source: environment


ncbi_country: Thailand: Chiang Mai

ncbi_isolation_source: food

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: sinus tract swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Aeriscardovia sp.


gtdb_type_species_of_genus: t

ncbi_organism_name: Barrientosiimonas humi

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Paenibacillus lautus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: Streptomyces sp. NPDC059783


ncbi_country: France: Lyon

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Universite Claude Bernard Lyon 1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Agrobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Portugal: Torrao

ncbi_isolation_source: piggery dust

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_country: China

ncbi_isolation_source: vegetable

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Spiroplasma apis B31

ncbi_submitter: Academia Sinica


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Japan

ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: University of Florida


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Prevotella sp. UBA4952

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Saccharofermentanales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Brevibacterium sp. K11IcPPYGO002

ncbi_submitter: Goa University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Tepidanaerobacteraceae bacterium


ncbi_organism_name: Pseudorhodobacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Deltaproteobacteria bacterium UBA4427

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA4427


ncbi_assembly_name: freshwater MAG --- Ja_bin-0888

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_assembly_name: freshwater MAG --- KT1_bin-478

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Phreatobacter sp.

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Endomicrobiia bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Aquabacter sp. CN5-332

ncbi_submitter: Kyonggi university


ncbi_isolation_source: estuarine mud [ENVO:00002160]

ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: Guizhou University of Chinese Thanditional Medicine


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0111

ncbi_submitter: Broad Institute


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Demequina litorisediminis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Japan:Chiba; Okinoshima Kaihin Park

ncbi_isolation_source: plastic

ncbi_organism_name: Nocardioides sp. OK12

ncbi_submitter: Gunma University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Soil

ncbi_organism_name: Peribacillus sp. Bi134

ncbi_submitter: University of Dundee


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Atopobium sp. UBA7774

ncbi_submitter: University of Queensland


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Luteimonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Malaysia: Seremban

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_country: Canada

ncbi_isolation_source: diarrheic human stool

ncbi_organism_name: Aliarcobacter butzleri L349

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Brazil

ncbi_isolation_source: brain

ncbi_organism_name: Weissella ceti

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: feces from female

ncbi_organism_name: Escherichia coli TOP2662-3

ncbi_submitter: National University of Singapore, Genome Institute of Singapore


ncbi_organism_name: Sinimarinibacterium flocculans

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: saliva

ncbi_organism_name: Limosilactobacillus oris DSM 4864

ncbi_submitter: Shanghai Majorbio


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 138

ncbi_submitter: SC


ncbi_country: Germany: Wuschewier; Brandenburg

ncbi_isolation_source: Hyphal surface

ncbi_organism_name: Pseudomonas sp. Wu6

ncbi_submitter: Centre of Microbial and Plant Genetics


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Roseateles sp. PN1

ncbi_submitter: Institute of Hydrobiology


ncbi_country: USA: OR

ncbi_isolation_source: ground turkey

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom

ncbi_organism_name: Bacillus thuringiensis serovar berliner

ncbi_submitter: University of Bath

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar berliner


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of California Davis


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: China: Hainan province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pseudomonas sp. HN2-3

ncbi_submitter: Northwest Normal University


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: blood

ncbi_submitter: Swansea University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B251;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: feces

ncbi_organism_name: Romboutsia ilealis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas putida BIRD-1

ncbi_submitter: Estacion Experimental del Zaidin, CSIC


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: Nepal

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1 str. Nep-21113

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. Nep-21113


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Methylotuvimicrobium sp. KM2

ncbi_submitter: Korea institute of energy research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: uncultured Cryomorphaceae bacterium


ncbi_country: USA: Chicago; Illinois

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: USA: OK

ncbi_isolation_source: antelope gemsbok feces (Oryx gazella)

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Detroit

ncbi_isolation_source: conjunctiva

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Synechococcus sp. UW69

ncbi_submitter: UNIVERSITY OF SOUTHERN CALIFORNIA


ncbi_organism_name: Escherichia coli IAI39

ncbi_submitter: Genoscope


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Odoribacter laneus


ncbi_organism_name: Saccharofermentanaceae bacterium

ncbi_submitter: McGill University


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Anaeroarcus burkinensis DSM 6283


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: Deciduous woodland; University campus

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_country: USA:ex Germany

ncbi_isolation_source: mycoplasma culture contaminant

ncbi_organism_name: Faucicola osloensis

ncbi_submitter: University of Florida


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: Washington DC

ncbi_submitter: WRAIR


ncbi_country: Czech Republic

ncbi_isolation_source: clinical sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, Charles University


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Sutterella sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: bacterium

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Brochothrix campestris

ncbi_submitter: Universite Laval


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Spain: off the coast of Alicante

ncbi_organism_name: Rhodothermaeota bacterium MED-G12

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;x__unclassified Rhodothermota;s__Rhodothermaeota bacterium MED-G12


ncbi_organism_name: Methylomonas denitrificans

ncbi_submitter: University of Alberta


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola dorei


ncbi_assembly_name: Rumen uncultured genome RUG021

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_country: Spain: Castril; Granada

ncbi_isolation_source: feces

ncbi_organism_name: Paenibacillus lutrae

ncbi_submitter: University of Granada


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2698536695 annotated assembly

ncbi_organism_name: Ruegeria lacuscaerulensis ITI-1157

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Beijing

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_organism_name: Rurimicrobium arvi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pseudobacteriovorax antillogorgiicola

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China:Zhejiang Province

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Henan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_isolation_source: gill tissue

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: sludge from bioreactor treating oxytetracycline bearing wastewater

ncbi_organism_name: Aeromonas media

ncbi_submitter: Research center for Eco-environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Rothia mucilaginosa


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 105

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: The University Hong Kong


ncbi_assembly_name: freshwater MAG --- LaPlata-7m-b_bin-306

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Canada: British Columbia;Abbotsford

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_submitter: Tsinghua University


ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Italian National Research Council (CNR)


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Lysinibacillus fusiformis


ncbi_organism_name: Pantoea vagans C9-1

ncbi_submitter: Forschungsanstalt Agroscope Changins-Wädenswil ACW


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paenalcaligenes hominis


ncbi_country: Australia: Adelaide

ncbi_isolation_source: blood

ncbi_submitter: SAHMRI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: IZSM-Portici


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: IN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Italy: Florence

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: China: Fujian

ncbi_isolation_source: Shrimp farm

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Ireland: Cork City

ncbi_isolation_source: dairy

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: New York

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Rhodococcus sp. NPDC047139

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NPDC047139


ncbi_isolation_source: water from drinking water treatment plant process

ncbi_organism_name: Roseomonas sp. CECT 9278

ncbi_submitter: University of Valencia, Spain


ncbi_country: China: Jinan

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Shandong University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Russia: North Caucasus

ncbi_organism_name: Neorhizobium galegae

ncbi_submitter: ARRIAM


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: King's College London


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Capnocytophaga leadbetteri


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Rakuno Gakuen University


ncbi_country: Germany

ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Enterococcus sp. FR205

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudarthrobacter oxydans


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Singapore

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Deparment of Primary Industries NSW

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: metagenome

ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella sp. GG_Kp146

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: water samples from two horizons (5 m and 20 m) were filtered through the net (size 27-um) and then filtered through nitrocellulose filters with a pore size of 0.22 um

ncbi_organism_name: Synechococcus sp. Baikal-G1

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: swab

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: EFA 27

ncbi_submitter: Yonsei Medical Center


ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidimonas sp.

ncbi_submitter: University of Oklahoma


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: Respiratory swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: USA: New Jersy

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: SGTSH 0811

ncbi_submitter: Silicon Gene Technologies (Shanghai) Co., Ltd.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: Prescottella equi

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: nematode

ncbi_organism_name: Xenorhabdus cabanillasii JM26

ncbi_submitter: Goethe University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Looe Key National Marine Sanctuary; Florida

ncbi_isolation_source: coral mucus

ncbi_organism_name: Bacteroidetes bacterium UBA6063

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA6063


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: USDA-ARS


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Segatella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Psychrobacter proteolyticus


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Avibacterium avium

ncbi_strain_identifiers: SCPM-O-B-15474 (Sitno)

ncbi_submitter: SRCAMB


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Yantai Center for Disease Control and Prevention


ncbi_organism_name: Ensifer canadensis

ncbi_submitter: CNRS


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: spongia

ncbi_organism_name: Streptomyces sp. YPW6

ncbi_submitter: BGI Research


ncbi_organism_name: uncultured Neisseria sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University


ncbi_country: Estonia

ncbi_isolation_source: milk

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: USA: TX

ncbi_isolation_source: feces (Sus scrofa)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater from Yellow Sea

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: University of Bern


ncbi_country: China: chongqing

ncbi_isolation_source: blood

ncbi_submitter: the First Affiliated Hospital of Chongqing Medical University


ncbi_assembly_name: Rumen uncultured genome RUG301

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_isolation_source: sheep gut metagenome


ncbi_country: China: Shandong

ncbi_isolation_source: sewage from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: USA: New Mexico

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Netherlands

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus

ncbi_submitter: TIFN


ncbi_isolation_source: lake water

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: sputum

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacteroides;s__Mycobacteroides abscessus;sb__Mycobacteroides abscessus subsp. bolletii;x__Mycobacteroides abscessus subsp. bolletii 2B-0912-R


ncbi_country: Japan

ncbi_organism_name: Stutzerimonas azotifigens DSM 17556

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Guangdong Academy of Agricultural Sciencescademy of Agricultural Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_submitter: Ministry of Health, National Public Health Laboratory


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pseudorhodobacter antarcticus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Thailand

ncbi_isolation_source: Rectal swab

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Thioalkalivibrio sp. ALJ11


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: Indonesia

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Kyushu University


ncbi_country: China: Ningxia

ncbi_isolation_source: chicken cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Dialister sp.

ncbi_submitter: UIUC


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas sp. WS 5018

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Escherichia coli 908555


ncbi_country: Brazil

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Sutcliffiella rhizosphaerae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Porphyromonas endodontalis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 1701

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: NIH/NHGRI


ncbi_country: China: Shanghai

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Sciences


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Nocardia carnea

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: USA: NY

ncbi_isolation_source: Intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: India: West Bengal

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium sp. WBAH33

ncbi_submitter: university of calcutta


ncbi_country: United Kingdom

ncbi_isolation_source: Pig; necrotic colitis

ncbi_organism_name: Campylobacter mucosalis CCUG 21559

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: France: Limoges

ncbi_submitter: Universite Paris Sud


ncbi_isolation_source: river water

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_isolation_source: vaginal swab from patient with trichomoniasis

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Korea University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_isolation_source: activated sludge

ncbi_organism_name: Ectobacillus antri

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: Throat swab 2

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_organism_name: Acinetobacter sp. HY1485

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: Canada: Saskatoon

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus sp. HMSC057G03

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Serratia sp. CY68758

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY68758


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Federico II University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Luteimonas sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Streptomyces sp. NPDC059447


ncbi_organism_name: Streptomyces sirii

ncbi_submitter: ICBFM SB RAS


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Oenococcus sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Streptococcus agalactiae MRI Z1-211

ncbi_submitter: The J. Craig Venter Institute


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Borreliella burgdorferi JD1

ncbi_submitter: University of Maryland School of Medicine - Institute for Genome Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Lu'an People's Hospital


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: vagina

ncbi_organism_name: Prevotella bivia DNF00320

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Hungatella sp.

ncbi_submitter: University of Copenhagen


ncbi_country: Cameroon

ncbi_isolation_source: Not known

ncbi_strain_identifiers: IPC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Devosiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: University of Chicago


ncbi_country: Kazakhstan: Nur-Sultan

ncbi_isolation_source: feces

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: National Center for Biotechnology


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Actinobacteria bacterium UBA5693

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: Scotland; Glasgow

ncbi_isolation_source: murine model

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: SCVJan

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Anaerococcus hydrogenalis

ncbi_submitter: EMG


ncbi_country: Lebanon

ncbi_organism_name: Brucella sp. CMUL 08

ncbi_strain_identifiers: CMUL 08

ncbi_submitter: LAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;x__unclassified Brucella;s__Brucella sp. CMUL 08


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_country: USA: International Space Station

ncbi_isolation_source: mineral grit embedded in adhesive paper

ncbi_organism_name: Paenibacillus vandeheii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Escherichia coli

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: Pea soup (8h 40 C degree)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: University of Groningen


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Synechococcus sp.


ncbi_country: India: Junagadh

ncbi_isolation_source: roots

ncbi_organism_name: Enterobacter sp. MR1

ncbi_submitter: Department of Biotechnology, Junagadh Agricultural University, Junagadh, Gujarat, INDIA


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_isolation_source: pasta filata cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Japan

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_strain_identifiers: Jucho

ncbi_submitter: Wadsworth Center


ncbi_isolation_source: fecal samples

ncbi_organism_name: Alistipes inops

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: Human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Bubeng

ncbi_isolation_source: termite gut

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: human skin; forehead (bedrest study)

ncbi_organism_name: Staphylococcus capitis subsp. capitis

ncbi_submitter: German Aerospace Center (DLR)


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_country: United Kingdom: England

ncbi_isolation_source: soil from root balls of Allium aflatunense

ncbi_organism_name: Pseudarthrobacter sulfonivorans

ncbi_strain_identifiers: ALL

ncbi_submitter: Korea university


ncbi_country: Italy: Cesano Maderno; Monza e Brianza

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Seto Island Sea

ncbi_organism_name: Sulfitobacter sp. M51

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: MO

ncbi_isolation_source: granny smith apple

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apis

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_country: Hungary: Budapest

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Semmelweis University


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Manipal Academy of Higher Education


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterellaceae bacterium


ncbi_country: USA: VA

ncbi_isolation_source: transverse colon

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Luteibacter sp. PvP019

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_submitter: BGI


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: terrestrial

ncbi_organism_name: Tissierella sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: Portugal: Porto

ncbi_isolation_source: Low Respiratory Tract Infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Mali: Koulikoro

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Colombia: Cordoba

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_submitter: CDC


ncbi_isolation_source: ear

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Amycolatopsis sp. NPDC021455

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: Institute of Biochemistry and Biophysics, Polish Academy of Sciences


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: University of Southern California

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_organism_name: Roseateles sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Nocardioides sp. Bht2

ncbi_submitter: IBPM RAS


ncbi_organism_name: uncultured cyanobacterium


ncbi_isolate: SPRUCE 149

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 149

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC090133


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: EPFL


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Chongqing Medical University


ncbi_submitter: Maynooth University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterobacter mori

ncbi_submitter: Ruijin Hospital, Shanghai Jiaotong University School of Medicine


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: SC


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: uncultured Rhodococcus sp.


ncbi_country: USA: TX

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Betaproteobacteria bacterium


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sun-yat Sen University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Listeria innocua

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_02_FULL_45_40


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P199P

ncbi_submitter: South China Agricultural University


ncbi_country: China: Hangzhou

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes


ncbi_isolation_source: Sea water

ncbi_organism_name: Citromicrobium sp. JL31

ncbi_submitter: Xiamen University


ncbi_country: USA:Durham; North Carolina

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Duke University


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Meju; fermented soybean

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Dongduk Women's University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_isolation_source: anaerobic digsetion effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Petrotogaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Longicatena sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_country: Germany: near Stuttgart

ncbi_isolation_source: soil

ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: Fraunhofer IGB


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: USA: South Carolina

ncbi_isolation_source: diseased cotton seed and lint tissue

ncbi_organism_name: Pantoea sp. Sc1

ncbi_submitter: USDA-ARS


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Heteroclostridium;s__Candidatus Heteroclostridium caecigallinarum


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01319

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01319


ncbi_submitter: Centre of Biotechnology of Sfax


ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: EMG


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: INS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Switzerland: Lake Zurich; 5 m depth

ncbi_organism_name: Candidatus Planktophila lacus

ncbi_submitter: University of Zurich

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila lacus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila lacus


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Escherichia coli E1002

ncbi_submitter: Broad Institute


ncbi_country: China: lake Taihu

ncbi_isolation_source: cyanobacterial aggregates

ncbi_organism_name: Altererythrobacter sp. TH136

ncbi_submitter: Nanjing Institute of Geography and Limnology


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Pseudodesulfovibrio sp.

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Eisenbergiella sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0059


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;s__Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_01_FULL_37_17


ncbi_organism_name: uncultured Vampirovibrio sp.


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Staphylococcus hominis