ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Washington University in Saint Louis


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Sphingomonas sp. DC4900

ncbi_submitter: Institute of Tibetan Plateau Research


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC056601

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Nocardia pseudovaccinii

ncbi_submitter: Technical University of Denmark


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Xinjiang

ncbi_isolation_source: Inland lake

ncbi_organism_name: Exiguobacterium sp. s168

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s168


ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_level: Chromosome

ncbi_country: Spain

ncbi_isolation_source: Hospital Univeristario de Bellvitge (Barcelona)

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centro Nacional de Análisis Genómico


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: Denmark: Randers

ncbi_isolation_source: activated sludge from Rand_18-Q3-R56-63

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: IN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Universtity Hospital Cologne


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_organism_name: Rhodobacteraceae bacterium UBA3087

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_isolation_source: respiratory sample

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Institut Pasteur


ncbi_country: USA: International Space Station

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Xiamen University


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Odoribacter laneus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Wellcome Sanger Institute


ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-1813

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_refseq_category: reference genome

ncbi_submitter: US Food and Drug Administration

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Rickettsiella endosymbiont of Miltochrista miniata

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: South Korea: Jeollanam-do

ncbi_isolation_source: skin

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: zhejiang University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Bacillus cereus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gaiellaceae bacterium


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: municipal wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1195

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1195


ncbi_organism_name: Vicinamibacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Longimicrobium sp.


ncbi_country: Australia: Sydney

ncbi_submitter: OUTBREAK


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_country: Italy

ncbi_isolation_source: lactic starter (for yoghurt making)

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: CIRM-BIA 450

ncbi_submitter: Brigham Young University


ncbi_isolation_source: Pond silt

ncbi_submitter: south china agricalture university


ncbi_organism_name: Actinokineospora enzanensis DSM 44649

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Korean fermented food

ncbi_organism_name: Sporolactobacillus terrae

ncbi_submitter: Korea Food Research Institute


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Synechococcaceae cyanobacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_strain_identifiers: BIM B-441

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: China

ncbi_isolation_source: Respiratory swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Botanical Garden; Aarhus

ncbi_isolation_source: compost

ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: Wintermute

ncbi_submitter: Aarhus Universitet


ncbi_country: Malaysia: Segamat

ncbi_isolation_source: feces

ncbi_submitter: Monash University Malaysia


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Roseomonas sp. CAU 1739

ncbi_submitter: Chung-Ang University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Lentisphaerae bacterium GWF2_45_14

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerae bacterium GWF2_45_14


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Elusimicrobiaceae bacterium


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Ulvibacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_organism_name: Treponema denticola


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: freshwater MAG --- LJ-3-4m_bin-0427

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Escalon; California

ncbi_isolation_source: almond drupe

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Wound secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Vallitaleaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: GJDJECCL

ncbi_organism_name: Candidatus Stammera capleta

ncbi_strain_identifiers: GJDJECCL

ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Texas at Austin


ncbi_country: Lebanon

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_submitter: University of Surrey


ncbi_isolation_source: metal

ncbi_organism_name: Enterobacteriaceae bacterium UBA6705

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: cervical canal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_country: China: Qinghai Province

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Aerococcaceae bacterium zg-1292

ncbi_submitter: China CDC


ncbi_country: Norway: Narvik

ncbi_isolation_source: air vent water in a clinic

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Germany: Dresden; Ockerwitz

ncbi_isolation_source: arable land

ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: BTU Cottbus-Senftenberg, Institute of Biotechnology


ncbi_organism_name: Eikenella corrodens

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_isolation_source: Hybrid assembly G100 S15BD05371 (as-11)

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sciensano


ncbi_organism_name: Methylorubrum thiocyanatum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium UBA4717


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Brucella abortus NI380

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Arachnia propionica


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Italy

ncbi_isolation_source: environmental swab sponge dairy facility blue cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China

ncbi_isolation_source: pig farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Spiroplasma sp. NBRC 100390

ncbi_submitter: Academia Sinica


ncbi_country: China: Guangzhou

ncbi_isolation_source: activated sludge

ncbi_organism_name: Myxococcus sp. AS-1-15

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: Vaginal fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Ruijin Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, China


ncbi_country: France: Creteil

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium


ncbi_country: USA: Ohio

ncbi_isolation_source: intra-abdominal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Denmark

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli KOEGE 3 (4a)

ncbi_strain_identifiers: KOEGE 3 (4a)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli KOEGE 3 (4a)


ncbi_organism_name: Oceanibaculum indicum

ncbi_strain_identifiers: USBA 36

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Chile

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_organism_name: Brucella abortus NI240


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_country: United Kingdom: Newcastle

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: bioMerieux


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Ukraine

ncbi_isolation_source: respiratory

ncbi_submitter: MRSN BI Team


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: inserm


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Moscow

ncbi_submitter: SRCAMB


ncbi_isolation_source: screen


ncbi_organism_name: Vibrio spartinae

ncbi_strain_identifiers: CECT 9026

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Michigan

ncbi_organism_name: Stenotrophomonas sp. PvP093


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp. NPDC093509

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Turkey: Hatay

ncbi_isolation_source: Orchard

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: Colombia:Valle del Cauca;Bahia Malaga

ncbi_isolation_source: mud

ncbi_submitter: Universidad de los Andes


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_submitter: Ausgem


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf132

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: China: Quanzhou Bay

ncbi_isolation_source: Coastal sediment

ncbi_organism_name: Aestuariivivens sediminicola

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: Singapore: Singapore General Hospital

ncbi_isolation_source: Endotracheal aspiration

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: surface water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_submitter: University of Edinburgh


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_assembly_name: freshwater MAG --- Loclat_bin-14965

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_organism_name: Chloroflexota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Mycoplasma sp. 654

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bradyrhizobium sp. 482_C4_N1_1

ncbi_submitter: VIB


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin98

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: KAP bin98

ncbi_submitter: Monash University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Ghent University


ncbi_country: China: Huizhou

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antioquia


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Cleveland Clinic


ncbi_country: Italy: Bologna

ncbi_isolation_source: blood

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine environment

ncbi_organism_name: Synechococcus sp. A15-44

ncbi_submitter: Station Biologique de Roscoff (CNRS - Sorbonne University)


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Photobacterium sp. J15

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Olivibacter ginsenosidimutans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: India

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Xanthomonas campestris pv. carissae

ncbi_strain_identifiers: NCPPB 2373

ncbi_submitter: University of Exeter


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Stanford University


ncbi_country: Finland

ncbi_isolation_source: Human

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_assembly_name: Rumen uncultured genome RUG12203

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: New South Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Spain

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter sp. FDAARGOS_156

ncbi_submitter: University of Pittsburgh


ncbi_assembly_name: IMG-taxon 2675903011 annotated assembly

ncbi_organism_name: Pantoea sesami

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudomonas aeruginosa PAO1

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Arizona

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_submitter: EMG


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_submitter: sichuan university


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: EPEC 1572

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF15-31

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Halomicronema sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Creighton University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: faeces

ncbi_submitter: UNIVERSITY OF MELBOURNE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Switzerland

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Bradyrhizobium sp. HKCCYLRH2015

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Nebraska

ncbi_isolation_source: Pooled lung; small and large intestine

ncbi_submitter: University of Nebraska-Lincoln

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Mameliella alba

ncbi_submitter: Alkalimicrobium pacificum F15 (MCCC 1A09948) is available from MCCC (Marine Culture Collection of China) (http://www.mccc.org.cn/).

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: necropsy lung; liver and kidney tissue

ncbi_organism_name: Corynebacterium mustelae

ncbi_submitter: Bielefeld University


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Haliea sp.

ncbi_submitter: EPFL


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Alistipes communis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Marinobacterium nitratireducens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Intrasporangiaceae bacterium URHB0013

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces

ncbi_submitter: University Medical Center Groningen


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Thioglobus sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__environmental samples;s__uncultured Candidatus Thioglobus sp.


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Verrucomicrobiales bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: BGI


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter sp. AOR18_HL

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Succinivibrionaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Serratia sp. CY35561

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY35561


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Phormidesmis sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. NW1196

ncbi_submitter: Sichuan University


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Streptococcus canis

ncbi_submitter: University of Glasgow


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: surgical intestinal biopsy

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Human Microbiology Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridia bacterium UC5.1-1D1

ncbi_submitter: Laboratory of Metagenomics, Graduate School of Frontier Sciences, The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__unclassified Clostridia;s__Clostridia bacterium UC5.1-1D1


ncbi_organism_name: Planctomycetota bacterium


ncbi_organism_name: Klebsiella sp. C250

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Spain: Praia da Seda; Carnota

ncbi_isolation_source: Intertidal marine water sample

ncbi_organism_name: Pseudomonas arcuscaelestis

ncbi_submitter: University of Balearic Islands


ncbi_country: USA: Chaska; MN

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: USDA-ARS


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Ghent University


ncbi_organism_name: Micrococcales bacterium


ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: DIP

ncbi_submitter: Robert Koch Institute


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: Central venous catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin Swab

ncbi_organism_name: Dietzia cinnamea

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Actinomycetospora chibensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Peking University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_assembly_name: BACA

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Biotechnology and Biomedicine Centre of the Academy of Science and Charles University


ncbi_country: Spain

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Neptunomonas japonica JAMM 1380

ncbi_strain_identifiers: JAMM 1380

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 149 - depth 50m

ncbi_organism_name: Nocardioides sp. REDSEA-S30_B4

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: India

ncbi_isolation_source: dairy Fram

ncbi_organism_name: Staphylococcus arlettae

ncbi_strain_identifiers: BVC S31

ncbi_submitter: Bihar Animal Sciences University


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: Brachymonas sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 5 / E; 5m depth; 0.2 filter

ncbi_organism_name: Spirochaetes bacterium GWE2_31_10

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__unclassified Spirochaetota;s__Spirochaetes bacterium GWE2_31_10


ncbi_organism_name: uncultured Sutterellaceae bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Universiti Sains Malaysia


ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Enterococcus sp. FR192

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_organism_name: Escherichia coli

ncbi_submitter: Seoul National University


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: CT

ncbi_isolation_source: ready to eat deli meat turkey mesquite

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Shigella sp. FJ201302

ncbi_submitter: Fujian Medical University


ncbi_country: USA

ncbi_submitter: FDA


ncbi_country: USA: California

ncbi_organism_name: Synechococcus elongatus PCC 6311

ncbi_submitter: University of California, San Diego


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: 04_9275 assembly

ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: inrae nouzilly


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil

ncbi_organism_name: Pedobacter rhodius

ncbi_submitter: Dongguk University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Kasetsart University


ncbi_organism_name: Parasphingorhabdus sp.


ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: The Hong Kong Polytechnic University


gtdb_type_species_of_genus: t

ncbi_organism_name: Fulvimarina pelagi HTCC2506

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: Bacteroides nordii

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lentisphaeraceae bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: Hunan Province; Xiaoxi National Natural Reserve

ncbi_organism_name: Shouchella xiaoxiensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Qinghai

ncbi_organism_name: Mumia sp. zg.B21

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_country: USA: Tennessee

ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: University of Oklahoma

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut

ncbi_organism_name: Frischella perrara

ncbi_submitter: University of Lausanne


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D10_bin-0834

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Oregon State University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human feces metagenome


ncbi_country: Hong Kong

ncbi_isolation_source: Stanley WWTPs_4 WWTPs effluent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Tianjin

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: Yangzhou University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_organism_name: Bacillus cereus group sp. BceL109

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL109


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Erysipelotrichales bacterium

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Rifle; Colorado

ncbi_isolation_source: sediment at 5m depth

ncbi_organism_name: Deltaproteobacteria bacterium CSP1-8

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium CSP1-8


ncbi_isolation_source: human gut


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_submitter: University of Foggia


ncbi_organism_name: Mesomycoplasma hyopneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong University of Science and Technology


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Germany

ncbi_isolation_source: poultry salami

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Companilactobacillus;s__Companilactobacillus versmoldensis;x__Companilactobacillus versmoldensis DSM 14857 = KCTC 3814


ncbi_isolation_source: Colon

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Pacificitalea manganoxidans

ncbi_submitter: Ocean University of China


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium UBA5776


ncbi_country: Thailand: Satun

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: Peru

ncbi_isolation_source: String method

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institue


ncbi_organism_name: Roseburia sp.


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Wuhan

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Huazhong University of Science and Technology


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Comenius University Science Park


ncbi_country: Russia: Moscow

ncbi_isolation_source: anus swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_submitter: University of Oviedo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: New York State

ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Cornell University


ncbi_country: Chile: Constitucion

ncbi_isolation_source: Fresh fecal sample

ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Caldimicrobium sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Argentina

ncbi_organism_name: Escherichia coli

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_assembly_name: IMG-taxon 2593339154 annotated assembly

ncbi_organism_name: Lachnospiraceae bacterium XPB1003

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Colombia: Buenaventura

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Genomics Resource Center - University of Maryland


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: UZ Gent


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia hominis

ncbi_submitter: University of Chicago


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Stutzerimonas frequens

ncbi_submitter: Development and utilization of Marine microbial resources


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptomyces nitrosporeus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Japan

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Meijo University faculty of pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: University of Lausanne


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: Air filter

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Fibrobacter succinogenes subsp. elongatus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Vulcanimicrobiaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: acrod

ncbi_submitter: NHGRI/NIH


ncbi_submitter: Broad Institute


ncbi_organism_name: Pararhodobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Mycoplasmoides genitalium M6282

ncbi_submitter: LSU Health Sciences Center


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_submitter: Aalborg University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Massilimicrobiota sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Japan: Nagano; Suwa

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_country: China: Hangzhou; Zhejiang

ncbi_isolation_source: vaginal fluids

ncbi_organism_name: Mobiluncus curtisii

ncbi_submitter: China Agricultural University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Xenorhabdus bovienii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Deltaproteobacteria bacterium UBA6091

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA6091


ncbi_organism_name: Lacipirellulaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: Rain forest

ncbi_organism_name: Bifidobacterium sp. ESL0800

ncbi_submitter: University of Lausanne


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera thermopropionivorans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera thermopropionivorans


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Gaoqing; Shandong Province

ncbi_isolation_source: high temperature Daqu for fermentation of Bandongjing Sesame-flavor liquor

ncbi_organism_name: Thermoactinomyces daqus

ncbi_submitter: CICC


ncbi_assembly_name: freshwater MAG --- Ki3-D3_bin-0135

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Halochromatium sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_isolate: SPRUCE 12

ncbi_organism_name: Candidatus Binatus soli

ncbi_strain_identifiers: SPRUCE 12

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__Candidatus Binatus soli

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__Candidatus Binatus soli


ncbi_organism_name: uncultured Sideroxydans sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces sp. NPDC101158

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: Siena College


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Wuxi Maternity and Child Health Care Hospital


ncbi_organism_name: Streptomyces sp. NPDC087894


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptomyces sp. NPDC059013


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Marinobacter sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_isolate: isolate

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Blautia sp. HCP3S3_H11

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Streptomyces buecherae


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_organism_name: Morganella morganii

ncbi_submitter: Sichuan University


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Munster Technological University


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pararhodobacter oceanensis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: IN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Limnochordales bacterium

ncbi_submitter: Research Center of Biotechnology


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Moskow Lomosonov State University


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bologna


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: urethral swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: SOX H

ncbi_isolation_source: thiotroph symbiont from mussel gill epithellium

ncbi_strain_identifiers: SOX H

ncbi_submitter: CRC 1182 Origin and Function of Metaorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Bathymodiolus brooksi thiotrophic gill symbiont


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Polaribacter sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Dongshaea marina

ncbi_submitter: National Taiwan University


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: SC


ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-136

ncbi_submitter: Arkin Lab


ncbi_isolation_source: secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: Spain: Madrid

ncbi_isolation_source: Rectal colonization

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Canada

ncbi_isolation_source: biobreeding rat feces

ncbi_organism_name: Paraclostridium bifermentans subsp. muricolitidis

ncbi_strain_identifiers: PAGU 1678

ncbi_submitter: Department of Infectious Diseases, National Center for Global Health and Medicine


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Cepheid


ncbi_organism_name: Parapedobacter sp. 2B3

ncbi_submitter: Nanjing Agricultural


ncbi_country: France: Limoges

ncbi_isolation_source: Lavabo

ncbi_submitter: Universite Paris Sud


ncbi_country: Egypt

ncbi_isolation_source: sputum

ncbi_submitter: bioMerieux


ncbi_country: China: Guangdong

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium RIFCSPLOWO2_12_FULL_51_24


ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: blood

ncbi_submitter: Public Health Ontario laborato

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_country: Kenya

ncbi_organism_name: Bacteroidales bacterium UBA6457

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6457


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: USA: Maine

ncbi_isolation_source: Boothbay harbor; 1m depth

ncbi_organism_name: Flavobacteria bacterium MS024-3C

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;x__unclassified Flavobacteriia;s__Flavobacteria bacterium MS024-3C


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bangladesh

ncbi_isolation_source: Other body fluids

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_assembly_name: Rumen uncultured genome RUG11689

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_country: United Kingdom

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia

ncbi_isolation_source: milk

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Nizhny Novgorod Research Veterinary Institute


ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_country: China

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Sporosarcina sp. FSL K6-6792

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Sporosarcina;x__unclassified Sporosarcina;s__Sporosarcina sp. FSL K6-6792


ncbi_country: Germany: Sulfidic spring near Regensburg

ncbi_isolation_source: biofilm from sulfidic groundwater

ncbi_organism_name: Desulfocapsa sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: USA: Thompson trail; Siena College campus; Loudonville; New York

ncbi_organism_name: Bacillus zhangzhouensis

ncbi_submitter: Siena College


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Genetics and Animal Breeding, Chattogram Veterinary and Animal Sciences University


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: BGDmi

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Rhizobium sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: University of Chicago


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_01_FULL_41_71


ncbi_organism_name: Segatella copri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Yangzhou University


ncbi_country: USA: Vidalia Region; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Stahliibacteriota;x__unclassified Candidatus Stahliibacteriota;s__Candidatus Stahliibacteriota bacterium CG23_combo_of_CG06-09_8_20_14_all_40_9


ncbi_country: Netherlands

ncbi_isolation_source: propagated starter culture used in cheese manufacturing

ncbi_submitter: Top Institute Food and Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus cremoris;sb__Lactococcus cremoris subsp. cremoris;x__Lactococcus cremoris subsp. cremoris TIFN3


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Poland: Lesser Poland; Lapczyca

ncbi_isolation_source: Brine

ncbi_organism_name: Halomonas sp. 11-S5

ncbi_submitter: University of Lodz


ncbi_country: Portugal: Porto

ncbi_isolation_source: Urinary Tract Infection

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Yersinia pestis I1994006

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M91155

ncbi_submitter: Broad Institute


ncbi_country: Pacific Ocean: East-Pacific Rise

ncbi_isolation_source: water from hydrothermal vent

ncbi_organism_name: Marinitoga sp. 1138

ncbi_submitter: University of Oslo


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Roseomonas mucosa

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Streptomyces sp. NPDC093600

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudorhodoferax sp. LjRoot39

ncbi_submitter: Aarhus University


ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: National Institute of Infectious Diseases (INEI) - ANLIS DR. CARLOS G. MALBRAN


ncbi_organism_name: Micrococcus lylae

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_submitter: The University of Melbourne


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Streptomyces sp. NPDC096310


ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2606217812 annotated assembly

ncbi_organism_name: Micrococcales bacterium KH10

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: Terrisporobacter sp.

ncbi_submitter: China Agricultural University


ncbi_submitter: Laboratoire de sante publique du Quebec

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: China: Shanxi

ncbi_submitter: Shanxi Medical University


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Curtobacterium poinsettiae

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_submitter: Curtin University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep sea mooring chain biofilm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: New Zealand: Te Puke; Bay of Plenty

ncbi_submitter: The New Zealand Institute for Plant & Food Research Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae ICMP 19094


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Turicimonas muris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Microbacterium aquilitoris

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas rhodesiae


ncbi_country: Italy: Roma

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Camerino


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus constellatus

ncbi_submitter: University of Washington


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Amylolactobacillus;s__Amylolactobacillus amylophilus;x__Amylolactobacillus amylophilus DSM 20533 = JCM 1125


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 2-427-07_S3_C3

ncbi_submitter: IGS


ncbi_country: Spain: Andalucia

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Bacillus sp. PIC28

ncbi_submitter: Instituto de Agricultura Sostenible

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. PIC28


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; high temperature high CO2

ncbi_organism_name: Candidatus Poriferisocius anaerobius

ncbi_submitter: Australian Institute of Marine Science


ncbi_country: Spain: Tenerife island

ncbi_organism_name: Algoriphagus aquaeductus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_organism_name: [Mycobacterium] bulgaricum

ncbi_submitter: Engelhardt Institute of Molecular Biology RAS


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_organism_name: Psychrobacter pacificensis

ncbi_submitter: Tang lab


ncbi_country: Brazil: Recife

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_organism_name: Prevotella intermedia

ncbi_submitter: EMG


ncbi_isolation_source: not available

ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: SC


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: University of Bern


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Egypt

ncbi_submitter: USUHS


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Nitrospinaceae bacterium


ncbi_submitter: Hanzhong Central Hospital


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (<1um filter)

ncbi_organism_name: Enterovibrio norvegicus

ncbi_submitter: MIT


ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: Guangxi University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: PA

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D7_bin-233

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Roseburia sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG