ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Galway


ncbi_country: Australia: WA; Corrigin

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. CO1-1-7

ncbi_submitter: Curtin University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-367

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chitinophagales bacterium

ncbi_strain_identifiers: new MAG-367

ncbi_submitter: Micoorganism


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Micromonospora rosaria

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii TG20277

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: United Kingdom: Salisbury

ncbi_isolation_source: Laboratory stock

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Exeter


ncbi_assembly_name: Rumen uncultured genome RUG14482

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: China

ncbi_isolation_source: air from chicken farm

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: Brazil

ncbi_isolation_source: swab of secretion from the foot

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Universidade Federal Fluminense


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- AM5_bin-0789

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;x__environmental samples;s__uncultured candidate division WWE3 bacterium


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: Spain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: Ascitic liquid

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Kingella denitrificans

ncbi_submitter: EMG


ncbi_country: South Korea: Seoul

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei university college of medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Sheffield


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3268-1

ncbi_submitter: Broad Institute


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_country: Ireland: Cork

ncbi_organism_name: Mediterraneibacter gnavus ATCC 29149

ncbi_submitter: University College Cork

ncbi_type_material_designation: assembly from type material


ncbi_submitter: University Hospital Muenster


ncbi_country: South Africa: North West; Free State; Northern Cape and Gauteng provinces

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas vasicola pv. zeae

ncbi_strain_identifiers: XGP

ncbi_submitter: Colorado State University


ncbi_isolation_source: chinese pickle

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Southwest University


ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_submitter: Unidad de Genomica y Bioinformatica


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: uncultured Syntrophaceae bacterium


ncbi_organism_name: uncultured Sangeribacter sp.


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- Umea_bin-05270

ncbi_organism_name: uncultured Acidobacteriia bacterium

ncbi_submitter: BILS


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria innocua

ncbi_submitter: CSIRO


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Pirellulaceae bacterium


ncbi_organism_name: Pseudonocardiaceae bacterium


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-raw water

ncbi_organism_name: Anaerolinea sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chthonomonas sp. UBA6660

ncbi_submitter: University of Queensland


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: nephridia

ncbi_organism_name: Verminephrobacter eiseniae

ncbi_submitter: Aarhus University


ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_assembly_name: IMG-taxon 2684622904 annotated assembly

ncbi_organism_name: Marinococcus luteus

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Blastomonas sp. CCH5-E3

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_organism_name: Enterobacter cloacae complex sp. Mu1197

ncbi_submitter: Emory University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. Mu1197


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3696

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3696


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Chandigarh

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Canada: Lacombe

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: India: Lampokhari Lake; Aritar; Sikkim

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: AR 06_Mez(R)_Lev(R)

ncbi_submitter: The University of Burdwan


ncbi_isolation_source: Bloodstream

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Applied Microbiology and Biotechnology Laboratory COMSATS University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: UTI

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Tufts University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus avium

ncbi_strain_identifiers: P18 C A7

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: sea water

ncbi_organism_name: Bacteroidetes bacterium MED-G20

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium MED-G20


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Jilin University


ncbi_organism_name: Arcobacter sp.

ncbi_submitter: Quanzhou Normal University


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence and no molasses

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_country: Australia: Erskine River

ncbi_isolation_source: sediment

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG666

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Pakistan: Faisalabad

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan


ncbi_assembly_name: IMG-taxon 2671180077 annotated assembly

ncbi_organism_name: Nitrosospira sp. Nsp1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: India: Rajsthan

ncbi_isolation_source: Rectal swab

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_country: South Korea: Suwon

ncbi_isolation_source: forest soil

ncbi_organism_name: Pedobacter kyonggii

ncbi_submitter: Kyonggi University


ncbi_country: Atlantic Ocean: Gulf of Mexico

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; collected from the Gulf of Mexico; station 5; 1m under the surface

ncbi_organism_name: Pelagibacteraceae bacterium GOM-A5

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterococcus sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: New Zealand

ncbi_isolation_source: low density polyethylene (LPDE) from waste management plant

ncbi_organism_name: Shewanella sp. SM29

ncbi_submitter: AgResearch


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: USDA-ARS


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_country: Germany: Karlsruhe

ncbi_isolation_source: fecal sample

ncbi_organism_name: Gordonibacter urolithinfaciens

ncbi_submitter: Max Rubner-Institut


ncbi_country: Greece: Crete

ncbi_isolation_source: root

ncbi_organism_name: Paenarthrobacter sp. CM16

ncbi_submitter: University of Exeter


ncbi_country: USA: North Carolina

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Raoultella sp. 18086

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Pedobacter sp. UBA4863

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: BGI


ncbi_assembly_name: Salmonella enterica CVM N29317-SQ v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_assembly_name: Rumen uncultured genome RUG10881

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_country: South Africa

ncbi_isolation_source: Blood culture

ncbi_submitter: National Institute for Communicable Disease


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides stercoris


ncbi_country: USA: California; Orange County; Anaheim City

ncbi_organism_name: Wolbachia endosymbiont of Diaphorina citri

ncbi_submitter: Crop Disease, Pests, and Genetics Research Unit, San Joaquin Valley Agricultural Sciences Center


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Soil

ncbi_submitter: MASSEY UNIVERSITY


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Desulfuromonadaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: National Vererinary Research Intitute


ncbi_organism_name: Microtetraspora malaysiensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Monash University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Hafnia paralvei

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: University of Amsterdam


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Biomin Research Center


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany

ncbi_isolation_source: feces (Ovis aries)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: United Kingdom

ncbi_isolation_source: Intestine

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- KR_bin-0829

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Izemoplasma sp. B36

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;x__unclassified Candidatus Izemoplasma;s__Candidatus Izemoplasma sp. B36


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate and no molasses at 250 mg/L thiocyanate

ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 8

ncbi_organism_name: Chlorobiaceae bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Campylobacter devanensis

ncbi_submitter: University of Aberdeen


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: marine

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: [Clostridium] nexile

ncbi_submitter: University of Chicago


ncbi_organism_name: Escherichia marmotae

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Hoeflea sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Qingdao

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: China Agricultural University


ncbi_country: Denmark

ncbi_isolation_source: Milk

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Chr. Hansen


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with photo-oxidized crude oil after inoculation with natural surface seawater; biological replicate 1

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_organism_name: Candidatus Fermentibacter danicus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus


ncbi_country: USA: Iowa

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NRRL S-104

ncbi_strain_identifiers: NRRL S-104

ncbi_submitter: University of Illinois


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_country: Senegal

ncbi_organism_name: Tolypothrix sp. PCC 7910

ncbi_submitter: Chungnam National Univ.


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Wallenberg Center for Molecular Medicine (WCMM) Department of Biomedical and Clinical Sciences (BKV) Division of Molecular Medicine and Virology (MMV) Faculty of Medicine and Health Sciences, Linkoping University, Linkoping, Sweden


ncbi_country: China: Fujian

ncbi_isolation_source: feces

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Clostridium haemolyticum

ncbi_submitter: Institut Pasteur


ncbi_assembly_level: Chromosome

ncbi_country: South Korea

ncbi_isolation_source: freshwater

ncbi_organism_name: Sphingorhabdus lacus

ncbi_submitter: Inha University


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Dysgonomonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Texas

ncbi_organism_name: Brevundimonas vesicularis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: sturter culture Hobbythek Quarkkultur

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: Czech Republic: SurGal clinic Brno

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_country: USA: Indian River Lagoon; Florida

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Central Florida


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: China: Chengdu

ncbi_isolation_source: Aquatic products

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Kangiella sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: New Zealand

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Massey University


ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Levilactobacillus sp. HBUAS67488

ncbi_submitter: Hubei University of Arts and Science


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Candidatus Aphodousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Sutterellaceae;x__Sutterellaceae incertae sedis;g__Candidatus Aphodousia;x__unclassified Candidatus Aphodousia;s__Candidatus Aphodousia sp.


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Achromobacter insolitus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Mycobacteroides abscessus 4S-0116-S

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bacillus carboniphilus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Italy: Milano

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_organism_name: Micromonospora sp. DT46

ncbi_submitter: University of Liege


ncbi_isolation_source: lake water

ncbi_organism_name: Erythrobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Italy: Rio di S. Giacomo

ncbi_isolation_source: anaerobic marine mud

ncbi_organism_name: Desulfobacter latus

ncbi_submitter: Aarhus University


ncbi_assembly_name: freshwater MAG --- Umea1_bin-2852

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: North South University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: BGI


ncbi_organism_name: Actinomyces sp.


ncbi_country: Australia

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NRRL S-350

ncbi_strain_identifiers: NRRL S-350

ncbi_submitter: University of Illinois


ncbi_organism_name: uncultured Microscillaceae bacterium

ncbi_submitter: EMG


ncbi_country: Antarctica: Prydz Bay

ncbi_isolation_source: Antarctic sea ice

ncbi_organism_name: Shewanella gelidimarina

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: British Columbia

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Streptomyces albogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Modicisalibacter luteus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Microbacterium sp. NPDC091382


ncbi_isolate: AOP18_D1_surf _bin _20

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP18_D1_surf _bin _20

ncbi_submitter: Genoscope


ncbi_organism_name: Shewanella chilikensis

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Streptomyces sp. NPDC004327


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Canada: Grand Nord

ncbi_organism_name: Bacillus pumilus

ncbi_strain_identifiers: NRRL BD-217

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Spain: Tous reservoir; Valencia

ncbi_isolation_source: freshwater reservoir from 25 m depth

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Shanghai MasScience Genomics Core

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Rhodocista pekingensis


ncbi_organism_name: Actinotignum sp. GS-2025d


ncbi_country: South Africa: Vryburg

ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: Microbial Biotechnology Laboratory (Prof. O.O. Babalola


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Utah

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Alistipes inops

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Loktanella salsilacus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_assembly_name: Rumen uncultured genome RUG12781

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Priestia aryabhattai


ncbi_isolation_source: caecum

ncbi_organism_name: Enorma massiliensis

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1205

ncbi_submitter: Broad Institute


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7064

ncbi_submitter: University of Queensland


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Neisseria sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Kitchen C

ncbi_organism_name: Pantoea dispersa

ncbi_submitter: Cornell University


ncbi_country: USA: FL

ncbi_isolation_source: fecal beef calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Klebsiella sp. 104938

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Dezhou

ncbi_isolation_source: farmland

ncbi_organism_name: Mesorhizobium sp. 8

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Rhodomicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Treponema socranskii

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Pus aspirate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: Florida

ncbi_organism_name: Prescottella equi

ncbi_submitter: The Roslin Institute


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_country: China

ncbi_organism_name: Acinetobacter sp. c1

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Canada: Liard River

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of British Columbia


ncbi_country: South Korea: Seoul

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus gallinarum

ncbi_strain_identifiers: EGA 12

ncbi_submitter: Yonsei Medical Center


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Denmark: Viborg

ncbi_isolation_source: activated sludge from Vibo_18-Q3-R45-57

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Puniceicoccaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11843

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Sichuan

ncbi_isolation_source: fly from chicken farm

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


gtdb_type_species_of_genus: t

ncbi_country: Germany: Giessen

ncbi_isolation_source: soil

ncbi_organism_name: Ornithinicoccus hortensis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Toho university


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 400095 11


ncbi_organism_name: Nitrospira defluvii

ncbi_submitter: Genoscope / CEA


ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriales bacterium UBA3477

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Leyella stercorea

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Acinetobacter baumannii AB_908-14-7

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfuricella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Australia: Brisbane

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Lysobacter sp.

ncbi_submitter: University of Gothenburg


ncbi_country: India: Vizhinjam; Kerala

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Central Marine Fisheries Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_assembly_name: Rumen uncultured genome RUG13936

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: IL

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Roseiflexus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA:California;San Joaquin Valley

ncbi_isolation_source: Groundwater from a diary farm

ncbi_organism_name: Candidatus Brocadiales bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;x__unclassified Candidatus Brocadiales;s__Candidatus Brocadiales bacterium


ncbi_country: Saudi Arabia:Rabigh harbor lagoon

ncbi_isolation_source: Red Sea lagoons-Mangrove mud

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Phyllobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Bacillus cereus group sp. BceL190

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL190


ncbi_organism_name: Leptospirales bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Biotechnology, BTU Cottbus-Senftenberg


ncbi_organism_name: Rickettsia aeschlimannii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stony Brook University


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tsinghua University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: freshwater lake; 5 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_organism_name: Sphingomonas sp. ABOLF

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Nagoya University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: AAFC


ncbi_country: Czech Republic: South Moravia

ncbi_isolation_source: mosquito midgut

ncbi_organism_name: Entomospira nematocerorum

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Yantai University


ncbi_country: Canada: Richmond Hill

ncbi_isolation_source: Recreational; fresh water Kettle Lake

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Oleiphilaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Blautia caecimuris

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Dendrosporobacter sp. 1207_IL3150

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: India: south east coast; Pichavaram

ncbi_organism_name: Planococcus maritimus

ncbi_submitter: Madurai Kamaraj University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Gulosibacter massiliensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Calgary


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by MDA; seawater

ncbi_organism_name: SAR116 cluster bacterium AG-321-K23

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium AG-321-K23


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: Molecular Genetics Laboratory, Department of Biological Sciences, School of Science, Tokyo Metropolitan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 19

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: NSW

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Bacillota bacterium LCP21S3_D8

ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Bacillota bacterium LCP21S3_D8


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: manure

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CM EMB KAN 2

ncbi_submitter: Maynooth University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shandong Second Medical University


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Neisseria perflava

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Italy

ncbi_submitter: University of Bologna


ncbi_country: Nicaragua: Managua

ncbi_isolation_source: antrum; stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Adlercreutzia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: organic falls

ncbi_organism_name: Vibrio sp. Y51_MX_L26

ncbi_submitter: Key Laboratory of Marine Biogenetic Resources State of Oceanic Administration


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-0897

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pediatric Ward

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: INRA-MIG


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_submitter: The University of Queensland


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_isolation_source: cattle

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Western Australia


ncbi_country: New Zealand: Hikurangi Margin

ncbi_isolation_source: Glendhu Ridge methane seep

ncbi_organism_name: Methyloprofundus sp.

ncbi_submitter: GNS Science


ncbi_isolation_source: fecal material

ncbi_organism_name: Oxalobacter aliiformigenes

ncbi_submitter: University of Western Ontario


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_strain_identifiers: affine MC_255

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: United Kingdom: London

ncbi_isolation_source: human oral cavity

ncbi_organism_name: Atopobium sp. oral taxon 416

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Atopobium;x__unclassified Atopobium;s__Atopobium sp. oral taxon 416


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides acidifaciens


ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Candidatus Scatavimonas sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Scatavimonas;x__unclassified Candidatus Scatavimonas;s__Candidatus Scatavimonas sp.


ncbi_organism_name: Bermanella sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Idiomarinaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- MJ110802A_bin-272

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Brocadiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__unclassified Candidatus Brocadiaceae;s__Candidatus Brocadiaceae bacterium


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Nanyang Technological University


ncbi_country: China: Hebei

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Dorea formicigenerans


ncbi_organism_name: Chitinophaga sp.


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: biochar-amended oxisol soil plot 3

ncbi_organism_name: Hamadaea sp.

ncbi_submitter: Arizona State University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Actinotignum timonense

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: deep subsurface microcosm

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: VTT Technical Research Centre of Finland Ltd

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Okayama University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California Berkeley


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lachnospira sp.


ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: California Institute of Technology


ncbi_assembly_name: freshwater MAG --- A-2_bin-407

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC001820

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01941

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Russia: Moscow

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: France: Limoges

ncbi_submitter: Universite Paris Sud


ncbi_country: China: Luzhou

ncbi_isolation_source: no

ncbi_submitter: Southwest Medical University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Broad Institute


ncbi_isolation_source: Cereal

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 392869-2


ncbi_country: Serbia: Rimski Sancevi

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ethiopia: Amhara; North Gondar

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Japan

ncbi_organism_name: Bacillus thuringiensis serovar aizawai

ncbi_strain_identifiers: BGSC 4J4

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar aizawai


ncbi_organism_name: Microbacterium algihabitans

ncbi_submitter: BioPS Co., Ltd.


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: RIIF

ncbi_country: United Kingdom

ncbi_isolation_source: vagina

ncbi_organism_name: Pasteurella multocida RIIF

ncbi_strain_identifiers: RIIF

ncbi_submitter: Moredun Research Institute


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NBC_01497

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Escherichia coli HVH 167 (4-6073565)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 167 (4-6073565)


ncbi_country: Japan:Hyougo; Himeji-city; National Hospital Organization Himeji Medical Center

ncbi_isolation_source: pus

ncbi_submitter: Sunstar Inc.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus constellatus;sb__Streptococcus constellatus subsp. pharyngis


ncbi_organism_name: Rhizobium sp. 18055

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: India: Vellore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Escherichia coli MS 200-1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Alteromonas sp. S167

ncbi_submitter: Institut de Ciencies del Mar


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Alcis repandata


ncbi_country: China: Bohai Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_country: China: Jiangxi; Dexing

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: McGill University


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: Bifact

ncbi_isolation_source: Bumblebee digestive tract

ncbi_organism_name: Bifidobacterium actinocoloniiforme DSM 22766

ncbi_submitter: University of Parma


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22485;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_isolation_source: catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Flammeovirga yaeyamensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Czech Republic: Nymburk

ncbi_isolation_source: urine

ncbi_submitter: Charles University in Pilsen


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: SA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroidaceae bacterium AF79-12b3TA

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: freshwater MAG --- KT2_bin-079

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Egypt

ncbi_isolation_source: Raw milk cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_assembly_name: Salmonella enterica CVM N29351-R v1.0

ncbi_country: USA: TN

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bredeney


ncbi_country: South Korea: Gyeonggi-do; Anseong

ncbi_isolation_source: raw milk

ncbi_organism_name: Chryseobacterium mulctrae

ncbi_submitter: Chung-Ang University


ncbi_isolate: XDR-PA

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces tamarix

ncbi_submitter: Tarim University


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. CNRCH_2014_2849

ncbi_submitter: IFREMER


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Klebsiella sp. 104360

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Control Grass (No Manure)

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: GC T1 LAM CEF 3

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Limnohabitans sp. Rim8

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. TMB3-12


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_assembly_name: freshwater MAG --- T8-022_bin-317

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: University of venda


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolate: AOP31_B2_surf _bin _3

ncbi_organism_name: Oceanisphaera sp.

ncbi_strain_identifiers: AOP31_B2_surf _bin _3

ncbi_submitter: Genoscope


ncbi_organism_name: Pseudomonas shirazica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Roseovarius sp. C7

ncbi_submitter: Technical University of Denmark (DTU)


ncbi_organism_name: Saccharicrinis sp. FJH62

ncbi_submitter: Shandong University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin S2.21

ncbi_isolation_source: groundwater

ncbi_organism_name: Coriobacteriia bacterium

ncbi_strain_identifiers: bin S2.21

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Pseudomonas yamanorum

ncbi_submitter: University of British Columbia


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Ruzzini Lab


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of La Rioja


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom: Kent

ncbi_isolation_source: soil

ncbi_organism_name: Virgibacillus pantothenticus

ncbi_strain_identifiers: DSM 26

ncbi_submitter: Shanghai Ocean university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome hRUG863

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Michigan

ncbi_isolation_source: Residence hot water heater drain valve

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: China: Jinhua

ncbi_isolation_source: excrement

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Jinhua Central Hospital


ncbi_organism_name: Roseburia sp. AF12-17LB

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Acidovorax sp. sic0104

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: hospital

ncbi_organism_name: Clostridioides difficile

ncbi_strain_identifiers: CDB

ncbi_submitter: Westlake University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Northeast Forestry University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Vibrio nigripulchritudo AM115

ncbi_submitter: Genoscope CEA


ncbi_country: USA: NY

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3212-1

ncbi_submitter: Broad Institute


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: cervical canal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacillus cereus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Egypt

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Minas Gerais


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: NC

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Gemmiger formicilis


ncbi_country: China: Fujian

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudidiomarina sediminum

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_organism_name: Gemmata sp.

ncbi_submitter: Rutgers University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Russia: Bykovsky Peninsula;Polar Fox Lagoon

ncbi_isolation_source: Polar Fox Lagoon sediment taken using 3m corer (60 mm diameter)

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_organism_name: Pseudomonas kielensis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Salmonella sp. CQ22WZ0330SAL

ncbi_submitter: Wanzhou CDC


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: University of Waterloo


ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Agrobacterium;s__Agrobacterium salinitolerans;x__Agrobacterium salinitolerans str. Hayward 0363


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Yoonia sp.

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_submitter: UC Irvine


ncbi_assembly_name: Rumen uncultured genome RUG13529

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Switzerland

ncbi_isolation_source: cheese (Emmental)

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: CIRM-BIA 220

ncbi_submitter: Brigham Young University


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA181

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Tanzania: Kigoma

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: New York State

ncbi_isolation_source: Laboratory

ncbi_organism_name: Acetobacter indonesiensis

ncbi_submitter: Cornell University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Aphanothece sp.

ncbi_submitter: Stockholm University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: kimchi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: SPC-SNU 72-2

ncbi_submitter: Chungbuk National University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Helicobacter sp.

ncbi_submitter: AAFC


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: USA: California

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA/ARS/WRRC/PSM


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_country: USA: Canoe Cove; Nahant; MA

ncbi_isolation_source: filtered seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Xenorhabdus bovienii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus pyogenes ABC020044412

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Microbacterium pullorum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Hungatella sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae subsp. ozaenae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. ozaenae


ncbi_country: Belgium: Wallonia

ncbi_isolation_source: intestine

ncbi_submitter: University of Liege


ncbi_country: France

ncbi_isolation_source: Red wine

ncbi_organism_name: Oenococcus oeni IOEB_1491

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_country: USA: IA

ncbi_isolation_source: liver

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Comamonadaceae bacterium PP-2

ncbi_submitter: Lycoming College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2706794922 annotated assembly

ncbi_organism_name: Pontibacter ummariensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Arizona

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM22443


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Brevibacterium casei

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Mycobacterium avium

ncbi_submitter: National Jewish Health


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: CAU


ncbi_organism_name: Coprococcus eutactus


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Loyola University Chicago


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kampala International University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: SAN Group Biotech Germany


ncbi_organism_name: Bremerella volcania

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella sp. NW951

ncbi_submitter: Sichuan University


ncbi_isolate: metabat2_pooled_metaflye.1249 MAG

ncbi_strain_identifiers: metabat2_pooled_metaflye.1249 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Siccibacter colletis

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: The German Federal Institute for Risk Assessment (BfR)


ncbi_country: Australia: Lake Catani

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: TX

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Denmark

ncbi_isolation_source: gut

ncbi_submitter: University of Southampton


ncbi_country: USA: Texas

ncbi_isolation_source: respiratory

ncbi_submitter: Texas A&M University


ncbi_country: USA: Wiser Lake; Washington

ncbi_isolation_source: cyanobacterial bloom in freshwater lake

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Oregon State University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Empedobacter sp. UBA7494

ncbi_submitter: University of Queensland


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: EPFL


ncbi_country: USA: St. Charles; Illinois

ncbi_isolation_source: stream algae

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sediment sample collected from floor of cattle farm

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Endomicrobiia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: National Chung Cheng University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Vreelandella titanicae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Louisiana

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Pusan National University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG