ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_level: Complete Genome

ncbi_country: Indian Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Shewanella sp. YLB-09

ncbi_submitter: Third Institute of Oceanography, State of Oceanic Administration


ncbi_country: Czech Republic

ncbi_isolate: Bordetella pertussis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_strain_identifiers: BP6242;Bordetella pertussis

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences, v.v.i.


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_assembly_level: Chromosome

ncbi_country: Netherlands

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: Central Veterinary Institute part of Wageningen UR


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Chthonomonadales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: UNIVERSITY OF LIVERPOOL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Arsenophonus;x__unclassified Arsenophonus;s__Arsenophonus endosymbiont of Apis mellifera


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Erciyes Univ. Faculty of Veterinary Medicine


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University College Dublin


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: Rumen uncultured genome RUG12777

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0607

ncbi_submitter: Broad Institute


ncbi_organism_name: Acidovorax delafieldii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Italy: Cremona (CR)

ncbi_isolation_source: intestine content

ncbi_organism_name: Clostridium botulinum C/D

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_strain_identifiers: Fecal samples


ncbi_country: South Korea: Seoul

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: EFM 14

ncbi_submitter: Yonsei Medical Center


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Hymenobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0179


ncbi_country: Ireland

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: University of Zurich


ncbi_country: USA: Washington

ncbi_isolation_source: groundwater

ncbi_organism_name: Pelosinus fermentans A11

ncbi_submitter: ENIGMA


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: MI

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA

ncbi_isolation_source: seed

ncbi_organism_name: Clavibacter californiensis

ncbi_strain_identifiers: CFBP 8216

ncbi_submitter: Shiraz University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Erythrobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Mushroom Spring; Yellowstone National Park

ncbi_isolation_source: 60C phototrophic microbial mat

ncbi_organism_name: Chloroflexus sp. MS-CIW-1

ncbi_submitter: Carnegie Institution for Science


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Peritoneal liquid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad El Bosque


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coriobacteriaceae bacterium AM102-74

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: Columbus; MS

ncbi_isolation_source: water

ncbi_organism_name: Chitinophagaceae bacterium UBA4407

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG557

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Streptomyces sp. NPDC059753

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Syntrophaceae bacterium


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Phocaeicola sp.


ncbi_assembly_name: freshwater MAG --- Erken-D3_bin-1232

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 6-537-08_S3_C1

ncbi_submitter: IGS


ncbi_country: China: Shaanxi

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_organism_name: Clostridioides difficile Y171

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: FL

ncbi_isolation_source: soil

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Flavonifractor sp.

ncbi_submitter: University of Vienna


ncbi_organism_name: Bacillus sp. JUb11

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JUb11


ncbi_isolation_source: Faeces


ncbi_assembly_name: Rumen uncultured genome RUG10801

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Changsha

ncbi_isolation_source: wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: University College London (UCL)


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Bacteroidales bacterium UBA7789

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA7789


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Hong Kong

ncbi_isolation_source: sediment

ncbi_organism_name: Escherichia sp. E14S1

ncbi_submitter: The Hong Kong University of Science and Technology


ncbi_country: Colombia

ncbi_isolation_source: Excreted bodily substance

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: France

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Aliivibrio sp. SR45-2

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: Malaysia

ncbi_isolation_source: waterfall

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Malaya


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_submitter: EMG


ncbi_isolate: skin of human

ncbi_isolation_source: genomic DNA

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: CR07;skin of human

ncbi_submitter: Department of Biosecurity PCL3


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Hubei Academy of Agricultural Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Mitsuokella multacida


ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Chile: Santiago

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: Velvet assembly of Acinetobacter baumannii ABUH319118

ncbi_country: USA

ncbi_isolation_source: Bodily fluid


ncbi_assembly_name: Escherichia coli CVM N36601PS v1.0

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N36601PS

ncbi_submitter: FDA


ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Swansea University


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial washings

ncbi_organism_name: Staphylococcus aureus M0145

ncbi_submitter: Broad Institute


ncbi_country: United Arab Emirates: Coast of the Arabian Gulf

ncbi_isolation_source: non-axenic culture of diatom

ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: NYUAD


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: University of Iowa


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Animal Health Institute


ncbi_organism_name: Enterococcus avium

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guangdong Institute of Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Russia: Perm krai

ncbi_submitter: Skolkovo Institute of Science and Technology


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Glycocaulis sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Fusobacteriota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 912


ncbi_country: France: Besancon

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: Israel

ncbi_isolation_source: rectal swab

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: China: Jiangsu province

ncbi_isolation_source: the gut of pufferfish

ncbi_organism_name: Acinetobacter sp. TR3

ncbi_submitter: Hohai University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: International Potato Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;x__unclassified Ralstonia solanacearum species complex;s__Ralstonia solanacearum species complex bacterium KE101


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Puniceispirillales bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__Candidatus Puniceispirillales bacterium


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cyclobacterium qasimii

ncbi_refseq_category: reference genome

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 952

ncbi_submitter: USDA-ARS


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Shanghai Jiao Tong University


ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterobacter cloacae complex sp. 309I3

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 309I3


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Iowa State University


ncbi_organism_name: [Bacteroides] pectinophilus


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Desulfatiglandales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Australia: Adelaide Hills; SA

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Montana State University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Erythrobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Binzhou University


ncbi_organism_name: uncultured Comamonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_submitter: Broad Institute


ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus sp. JS3073

ncbi_submitter: Shanghai Jiaotong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. JS3073


ncbi_country: France

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_country: Germany

ncbi_isolation_source: Tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University & Research


ncbi_country: China: South China Sea

ncbi_isolation_source: Sediments

ncbi_organism_name: Bacillus sp. NH11B

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. NH11B


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_submitter: University of Michigan


ncbi_isolate: new MAG-282

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chthonomonas sp.

ncbi_strain_identifiers: new MAG-282

ncbi_submitter: Micoorganism


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_assembly_name: Rumen uncultured genome RUG11141

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Staphylococcus aureus 1801-2 2011

ncbi_submitter: IGS


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Czech Republic: Pribram

ncbi_isolation_source: Conjunctiva

ncbi_organism_name: Acinetobacter courvalinii

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Syntrophaceae bacterium UBA5726

ncbi_submitter: University of Queensland


ncbi_country: Kenya: Kajiado County

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: biochar-amended oxisol soil plot 8

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Arizona State University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Brooks

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_submitter: MRSN BI Team


ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae MU_NG3

ncbi_submitter: Read Laboratory, Emory University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Ruijin Hospital, Shanghai Jiaotong University School of Medicine


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNIMI


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Pakistan

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: United Kingdom: Anglesey

ncbi_isolation_source: soil

ncbi_organism_name: Myxococcus xanthus

ncbi_submitter: Aberystwyth University


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_isolate: metabat2_XCR1_HET_7832_bwa.88 MAG

ncbi_organism_name: uncultured Prevotella sp.

ncbi_strain_identifiers: metabat2_XCR1_HET_7832_bwa.88 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Devosia sp.

ncbi_submitter: Radboud University


ncbi_country: Australia: Western Australia

ncbi_organism_name: Ehrlichia canis

ncbi_submitter: CSIRO


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Italy: Lake Garda

ncbi_isolation_source: freshwater sample

ncbi_organism_name: Tychonema bourrellyi FEM_GT703

ncbi_submitter: University of Trento


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: India: Mawbri; Meghalaya

ncbi_isolation_source: Retailer chopping board swab

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Radboudumc


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: Tokyo University of Marine Science and Technology


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bifidobacterium asteroides


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_country: USA: Junipers Reservoir; Oregon

ncbi_isolation_source: lake water cyanobacterial bloom contaminated with bovine manure

ncbi_organism_name: Dolichospermum sp. JUN01

ncbi_submitter: Oregon State University


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: water

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_assembly_name: freshwater MAG --- Umea3p1_bin-0607

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Palacky University Olomouc


ncbi_country: Mexico: Navolato; Sinaloa

ncbi_isolation_source: Culiacan River; Cofradia de San Pedro

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pomona


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_country: Australia: Tasmania; Dairy Farm

ncbi_isolation_source: dairy equipment filters

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: University of Tasmania


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG10634

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas gessardii

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Kosakonia cowanii


ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Bdellovibrionales bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: US Food and Drug Administration


ncbi_country: United Kingdom: Warwickshire

ncbi_organism_name: Pseudomonas syringae pv. primulae

ncbi_strain_identifiers: ICMP 2732

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. primulae


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: China: Qingdao

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shandong University


ncbi_organism_name: Tolypothrix sp. NIES-4075

ncbi_submitter: Toyohashi University of Technology


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_country: China: Beijing

ncbi_isolation_source: bile

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T44830

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Leptospira interrogans serovar Geyaweera

ncbi_submitter: JCVI


ncbi_organism_name: Lysobacter koreensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Halomonas campaniensis

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Duffyella gerundensis

ncbi_submitter: Universidad Antonio Narino


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacteroides eggerthii


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Ruminococcus callidus


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium GW2011_GWD1_41_16


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Anaerobiospirillum pullicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Antarctica: Livingston island

ncbi_organism_name: Pseudoalteromonas agarivorans

ncbi_submitter: Sofia University "St. Kliment Ohridski"


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Vulcanococcus sp. CPBay_Sum27L08_19

ncbi_submitter: Clemson University


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_country: USA: Canton; MS

ncbi_isolation_source: Activated sludge biosolids

ncbi_organism_name: Saprospiraceae bacterium UBA3362

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Clostridium autoethanogenum

ncbi_submitter: LanzaTech


ncbi_organism_name: Actinomadura hibisca NBRC 15177

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: Italy

ncbi_isolation_source: meat sheep

ncbi_submitter: FDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Chile

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universidad Autonoma de Chile


ncbi_country: Viet Nam

ncbi_isolation_source: mangrove

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Institute of Biotechnology, Vietnam Academy of Science and Technology (VAST)


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Spain: Asturias

ncbi_organism_name: Acidipropionibacterium jensenii

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_submitter: Sichuan University


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Gluconobacter cerinus

ncbi_submitter: Cornell University


ncbi_country: Germany

ncbi_isolation_source: Wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Thailand: Yasothon

ncbi_submitter: Ministry of Public Health-Thailand

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia metallica

ncbi_submitter: University of Michigan


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Ruminiclostridium josui JCM 17888

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_isolation_source: Cardiac surgery

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_country: China: Shaanxi

ncbi_isolation_source: soil from plant root system

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: SHYJILJH

ncbi_submitter: NWAFU


ncbi_country: Canada: Montreal

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- AM-sed-core3-D0_bin-248

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: water

ncbi_organism_name: Listeria marthii


ncbi_organism_name: Bacillus sp. FSL K6-0923

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-0923


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Occultella aeris

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Owenweeksia sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_country: China: Hangzhou; Zhejiang

ncbi_isolation_source: liver abscess

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: MRSN BI Team


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin S2.74

ncbi_isolation_source: groundwater

ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_strain_identifiers: bin S2.74

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_country: China: Bohai Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium


ncbi_isolation_source: shallow marine sediment

ncbi_organism_name: uncultured Planococcus sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AP

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: USA: MD

ncbi_isolation_source: chicken breast

ncbi_submitter: FDA


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Terriglobus aquaticus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Marinitoga sp. 1197

ncbi_submitter: University of Alberta


ncbi_organism_name: Pantoea nemavictus

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: New Zealand

ncbi_isolation_source: low density polyethylene (LPDE) from waste management plant

ncbi_organism_name: Shewanella sp. SW1

ncbi_submitter: AgResearch


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Friedrich Schiller University Jena


ncbi_isolation_source: blood

ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: human feces metagenome


ncbi_isolate: SPRUCE 513

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 513

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: Clinical

ncbi_isolation_source: Human

ncbi_strain_identifiers: Clinical

ncbi_submitter: instituto nacional de salud del peru

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: surface water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: URMITE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Uppsala University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Phocaeicola vulgatus CL09T03C04

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Lutibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured beta proteobacterium


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Citrobacter sedlakii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Microvirga sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Pseudomonas sp. ES3

ncbi_submitter: Slippery Rock University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Netherlands: Olburgen

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; full scale (600m3) reactor for the removal of ammonium from wastewater from the potato processing industry

ncbi_organism_name: candidate division WS6 bacterium OLB20

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__candidate division WS6 bacterium OLB20


ncbi_organism_name: Anaerococcus vaginalis

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_country: South Korea

ncbi_isolation_source: Chicken meat

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Xanthomonas hortorum pv. hederae

ncbi_strain_identifiers: WHRI 7736B

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: South Africa: North-West

ncbi_isolation_source: distribution water from treated drinking water production facilities

ncbi_organism_name: Bacillus safensis

ncbi_submitter: North-West University


ncbi_country: Viet Nam

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague institute "Microbe"


ncbi_assembly_name: Rumen uncultured genome RUG739

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: United Kingdom

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: China: Beijing

ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: China CDC


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Ahrensia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Alcanivorax borkumensis

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Sweden

ncbi_isolation_source: prostatic tissue

ncbi_organism_name: Cutibacterium acnes subsp. defendens

ncbi_submitter: Aarhus University


ncbi_country: India

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. Ru71

ncbi_submitter: Institute of Genomics and Integrative Biology


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Acidiferrobacteraceae bacterium


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Anaerofilum sp.

ncbi_submitter: Biomin Research Center


ncbi_country: Brazil: Roraima

ncbi_submitter: Oswaldo Cruz Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Texas at San Antonio


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Los Alamos National Lab


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Bacteroides koreensis

ncbi_submitter: University of Guelph


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia

ncbi_isolation_source: dairy cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: CSIRO


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yonsei University College of medicine


ncbi_country: South Korea:Seoul

ncbi_isolation_source: blood

ncbi_submitter: Hallym University College of Medicine


ncbi_country: Ukraine

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Pusan National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Nagoya University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Wheatland; New York

ncbi_organism_name: Pantoea agglomerans

ncbi_strain_identifiers: RIT-PI-T

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Mixta theicola

ncbi_submitter: University of Pretoria


ncbi_country: Germany: Frankfurt am Main

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SJOS6016

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_submitter: University of Queensland

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Candidatus Aquicultoria;o__Candidatus Subteraquimicrobiales;f__Candidatus Oleimmundimicrobiaceae;g__Candidatus Oleimmundimicrobium;s__Candidatus Oleimmundimicrobium americanum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Aquicultoria;o__Candidatus Subteraquimicrobiales;f__Candidatus Oleimmundimicrobiaceae;g__Candidatus Oleimmundimicrobium;s__Candidatus Oleimmundimicrobium americanum


ncbi_organism_name: Streptomyces albidoflavus


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Gloeomargarita sp. GMQP_bins_69

ncbi_submitter: Sun Yat-sen University


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Fish hatchery

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_country: Poland: Bialystok

ncbi_isolation_source: lower respiratory tract

ncbi_organism_name: Escherichia coli O89m:H9

ncbi_submitter: Medical University of Bialystok


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_isolation_source: ballast tank

ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Shandong university


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: University of Chicago


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Ehrlichia ruminantium str. Welgevonden

ncbi_strain_identifiers: Welgevonden

ncbi_submitter: CIRAD, France


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Michigan State University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Mexico: Milpa Alta; CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI


ncbi_isolation_source: ascites

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Nanjing Drum Tower Hospital, the Affiliated Hospital of Nanjing University Medical School


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus cremoris;sb__Lactococcus cremoris subsp. cremoris;x__Lactococcus cremoris subsp. cremoris A76


ncbi_isolation_source: contamination of an anaerobic culture

ncbi_organism_name: Cutibacterium acnes KPA171202

ncbi_submitter: University of Helsinki


ncbi_organism_name: Treponema denticola SP33

ncbi_submitter: Broad Institute


ncbi_country: Panama: Bocas del Toro; Inner Solarte

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Defluviicoccus sp.

ncbi_submitter: Stony Brook University


ncbi_country: United Kingdom

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: SC


ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 21-24 cm

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Limenecus avicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Limenecus;s__Candidatus Limenecus avicola


ncbi_organism_name: Alkalispirochaeta sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_submitter: Peking University Third Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Kocuria sabuli

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Municipal Pensacola Beach; FL

ncbi_isolation_source: beach sand

ncbi_organism_name: Proteobacteria bacterium UBA3457

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA3457


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: uncultured Lysobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Azospirillum sp.


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Nitrosospira sp.


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Streptococcus agalactiae FSL S3-128

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Switzerland

ncbi_isolation_source: chicken cecum

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: ETH Zurich


ncbi_organism_name: Hydrogenoanaerobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: Alaska

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: stool

ncbi_submitter: The Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 2010K-0262


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_submitter: China Agriculture University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cycloclasticus sp.


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus cabrialesii subsp. cabrialesii

ncbi_submitter: Instituto Tecnologico de Sonora

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus cabrialesii;sb__Bacillus cabrialesii subsp. cabrialesii


ncbi_country: China: Futian

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 228

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: Icahn School of Medicine


ncbi_country: Montenegro

ncbi_isolation_source: Montengrin brine cheese

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Donja Gorica


ncbi_organism_name: Shinella sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Ophion ellenae


ncbi_organism_name: Acinetobacter indicus


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Syntrophomonas sp.

ncbi_submitter: University of Iowa


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Escherichia coli PA7

ncbi_submitter: Institute for Genome Sciences


ncbi_country: South Korea: Pohang

ncbi_organism_name: Flavobacterium croceum DSM 17960

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;s__Flavobacterium croceum;x__Flavobacterium croceum DSM 17960


ncbi_isolation_source: mouse gut

ncbi_organism_name: Escherichia coli O16:H48

ncbi_submitter: National Microbiology Laboratory at Guelph


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured Flavonifractor sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprococcus comes

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: Burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Belgium: Zwijndrecht

ncbi_isolation_source: root

ncbi_organism_name: Ensifer sp. 1H6

ncbi_submitter: Hasselt University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Londrina; PR

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Embrapa Genetic Resources and Biotechnology


ncbi_organism_name: uncultured Demequinaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Cryomorphaceae bacterium


ncbi_country: China: Guangxi

ncbi_isolation_source: sandy soil

ncbi_organism_name: Paenibacillus sp. H1-7

ncbi_submitter: paenibacillus


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China:Hunan province

ncbi_isolation_source: seed

ncbi_organism_name: Bacillus sp. HNR-4

ncbi_submitter: Capital Normal Univercity

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. HNR-4


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: Lund University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Healthy child

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Bioprox


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Neisseria viridiae

ncbi_submitter: Wellcome Sanger Institute


ncbi_assembly_name: Clostridium culturomicsense

ncbi_organism_name: Clostridium culturomicium

ncbi_submitter: URMITE


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Georgia: Tbilisi

ncbi_isolation_source: bovine

ncbi_organism_name: Bacillus anthracis 52-G

ncbi_submitter: Center for Microbial Genetics and Genomics, Northern Arizona University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis 52-G


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: secretion

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


ncbi_country: Spain

ncbi_organism_name: Sinorhizobium sp. M4_45

ncbi_submitter: Centre for Plant Biotechnology and Genomics UPM-INIA


ncbi_isolation_source: bovine mastitis milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ETH Zurich


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin S2.5

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudodesulfovibrio aespoeensis

ncbi_strain_identifiers: bin S2.5

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Sunchang

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Changzhou;Jiangsu

ncbi_isolation_source: Aerobic activated sludge

ncbi_organism_name: Phaeodactylibacter sp.

ncbi_submitter: South China University of Technology


ncbi_isolate: SPRUCE 46

ncbi_organism_name: Vulcanimicrobiaceae bacterium

ncbi_strain_identifiers: SPRUCE 46

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Thermodesulfobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Rakuno Gakuen University; Mansoura University; Zewail City of Science and Technology


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: China: Shanghai

ncbi_isolation_source: clinic

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Municipal ceter for disease control & prevention


ncbi_country: China: Gansu; Baiyin

ncbi_isolation_source: Copper Mine

ncbi_organism_name: Acidithiobacillus thiooxidans

ncbi_submitter: Central South University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Belgrade, Faculty of Biology


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Tsinghua University


ncbi_submitter: Marques de Valdecilla University Hospital


ncbi_submitter: Mahatma Gandhi Medical College & Research Institute,


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Streptomyces sp. MH13

ncbi_submitter: University of Sharjah


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: rumen

ncbi_submitter: Inner Mongolia University of Technology


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: India

ncbi_organism_name: Xanthomonas campestris pv. lawsoniae

ncbi_strain_identifiers: NCPPB 579

ncbi_submitter: University of Exeter


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Sheffield


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Thermoflexus hugenholtzii JAD2

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: Hamstring

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_country: South Korea

ncbi_isolation_source: Sea sand

ncbi_organism_name: Pseudomarimonas salicorniae

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Winogradskyella damuponensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia sp. AF02-12

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6547

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Vibrio coralliirubri

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Syntrophomonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Qatar

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Qatar University


ncbi_isolation_source: leaves

ncbi_organism_name: Methylobacterium sp. WL30

ncbi_submitter: Aarhus University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Kansas

ncbi_submitter: University of Guelph


ncbi_isolation_source: whole mosquito body

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: The Pennsylvania State University


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Jiangsu

ncbi_isolation_source: environment

ncbi_submitter: Yangzhou univeristy


ncbi_submitter: Shanghai Ruijin Hospital


ncbi_isolate: Brucella melitensis biovar 3

ncbi_isolation_source: lymph node

ncbi_organism_name: Brucella melitensis

ncbi_strain_identifiers: Brucella melitensis biovar 3

ncbi_submitter: ANSES


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Kiel University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: air conditioner

ncbi_organism_name: Enterovirga aerilata

ncbi_submitter: SangjiUniversity


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Pseudoflavonifractor sp. BIOML-A15

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Erasmus University Medical Center


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Mycobacteroides abscessus 5S-0304

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Lyons County; Georgia

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22705;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: South Korea: Gangwon-do

ncbi_isolation_source: apple

ncbi_organism_name: Erwinia pyrifoliae

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_isolation_source: rumen

ncbi_organism_name: Gammaproteobacteria bacterium UBA2924

ncbi_submitter: University of Queensland


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Ferrimonas senticii DSM 18821


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1413

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- MJ2_bin-122

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Spain: Ribadeo; Galicia

ncbi_isolation_source: larvae

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_organism_name: Paenibacillus prosopidis

ncbi_strain_identifiers: CECT 7506


ncbi_country: New Zealand

ncbi_organism_name: Leptospira interrogans serovar Pomona

ncbi_submitter: Massey University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Germany

ncbi_isolation_source: Feces; FP

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Helsinki


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Sarcina ventriculi

ncbi_submitter: SC


ncbi_submitter: Center for Microbial Communities


ncbi_country: France: Marseille

ncbi_isolation_source: blood culture

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: nasal swab

ncbi_submitter: University of Sao Paulo


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_organism_name: Actinomyces oris

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2595698249 annotated assembly

ncbi_organism_name: Cellulophaga tyrosinoxydans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Spain: Mallorca

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: University of Balearic Islands


ncbi_country: Japan: Tokyo

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Tokyo Medical And Dental University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Copenhagen


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Psychrobacter communis

ncbi_submitter: Quadram Institutte


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- VK3_bin-0992

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


gtdb_type_species_of_genus: t

ncbi_organism_name: Brooklawnia cerclae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_organism_name: Noviherbaspirillum sp. ST 5-3

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Hydrogenophilales bacterium 17-61-76


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Peptococcaceae bacterium