ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: SA

ncbi_submitter: School of Life Sciences, Xiamen University


ncbi_country: USA: NC

ncbi_isolation_source: avian intestine (Meleagris sp.)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospira sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Clostridium] leptum


ncbi_isolation_source: Skin pustule

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Texas A&M University


gtdb_representative: t

ncbi_country: Italy

ncbi_isolation_source: Tufaceous surfaces with whitish-grey patinas in the catacombs of St Callistus in Rome; Italy

ncbi_organism_name: Kribbella catacumbae DSM 19601

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: Canada: Waterloo; Ontario

ncbi_isolate: LW2 Bin 16_9

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_strain_identifiers: LW2 Bin 16_9

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Uruguay

ncbi_isolation_source: common scab lesions on potato tubers

ncbi_organism_name: Streptomyces acidiscabies

ncbi_submitter: Facultad de Quimica-Universidad de la Republica


ncbi_organism_name: Streptomyces sp. NPDC005962

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella sonnei 09-2245

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: freshwater MAG --- Umea1p2_bin-0027

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Nebraska

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: India: Western Puga Valley; Laddakh

ncbi_isolation_source: microbial mat community growing on a geothermal spring

ncbi_organism_name: Cyanobacteria bacterium M5B4

ncbi_submitter: Bose Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium M5B4


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Delaware; Cape May-Lewes Ferry Terminal

ncbi_isolation_source: Seawater from the Delaware coast

ncbi_organism_name: Pseudoalteromonas piscicida

ncbi_submitter: USDA-Agricultural Research Service-Eastern Regional Research Center


ncbi_country: Germany: Luebeck

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Enterocloster bolteae


ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Micrococcus yunnanensis

ncbi_submitter: Iowa State University


ncbi_organism_name: Phaeodactylibacter xiamenensis

ncbi_submitter: Jinan University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Delft University of Technology


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Neomicrothrix parvicella

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_level: Chromosome

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacillus mycoides

ncbi_strain_identifiers: TIAC 5408

ncbi_submitter: Ghent University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: IMPaM(UBA/CONICET)-Facultad de Medicina UBA


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: New Zealand

ncbi_organism_name: Erwinia billingiae

ncbi_strain_identifiers: PBb

ncbi_submitter: Plant & Food Research


ncbi_country: USA: AR

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_isolation_source: gut

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Japan: Tokyo

ncbi_isolation_source: bile

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo Hospital


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Lapillicoccus sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Germany

ncbi_submitter: University of Zurich


ncbi_country: Ireland

ncbi_submitter: University of Galway


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Solimicrobium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Celeribacter sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_country: Canada: Ontario

ncbi_isolation_source: waste water from culvert

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Grass with Chicken Manure

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: GP T3 LAM CEF 3

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Great Boiling Spring; Nevada

ncbi_isolation_source: hot springs

ncbi_organism_name: Parcubacteria bacterium GBS-2

ncbi_submitter: Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Parcubacteria;s__Parcubacteria bacterium GBS-2


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Blastomonas sp. CCH6-A6

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Harvard University


ncbi_country: Portugal

ncbi_isolation_source: wound swab

ncbi_submitter: Max Rubner-Institut


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: South China Agricultural University


ncbi_country: China: Qinghai-Tibet Plateau

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. DM2

ncbi_submitter: Northwest Institute of Eco-Environment and Resources,CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. DM2


ncbi_country: Canada

ncbi_isolation_source: cheese curds from cheese plant

ncbi_organism_name: Paenibacillus validus

ncbi_submitter: University of Guelph


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12251


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pullichristensenella;s__Candidatus Pullichristensenella excrementipullorum


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_assembly_name: IMG-taxon 2593339268 annotated assembly

ncbi_organism_name: Pseudobutyrivibrio sp. C4

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: [Clostridium] clostridioforme CAG:511

ncbi_submitter: DTU


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital


ncbi_organism_name: Citrobacter sp. CK181

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Faculdade de Medicina Veterinaria e Zootecnia de Botucatu

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: Brackish water

ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Fretibacterium sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: New Zealand

ncbi_isolation_source: milk powder manufacturing plant

ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: New Zealand Genomics Ltd


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_organism_name: Salmonella sp. C2929

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Rhizobium gallicum bv. gallicum R602sp

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium gallicum;x__Rhizobium gallicum bv. gallicum;x__Rhizobium gallicum bv. gallicum R602sp


ncbi_organism_name: uncultured Bergeyella sp.

ncbi_submitter: EMG


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Veillonella parvula

ncbi_submitter: University of Chicago


ncbi_isolation_source: human gut


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Henan

ncbi_organism_name: Escherichia sp. XD100

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Denmark

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C170_11

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: China: Shenzhen; Longgang

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Bacillus nitratireducens

ncbi_submitter: Universidade Estadual de Londrina - UEL


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium GW2011_GWB1_33_38


ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG11277

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Candidatus Woesearchaeota archaeon

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;p__Candidatus Woesearchaeota;x__unclassified Candidatus Woesearchaeota;s__Candidatus Woesearchaeota archaeon


gtdb_type_species_of_genus: t

ncbi_country: China: Taklamakan desert in Xinjiang

ncbi_isolation_source: soil

ncbi_organism_name: Planctomonas deserti

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_country: USA: Ohio

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Malaysia: State of Selangor

ncbi_isolation_source: fermented vegetable waste

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Kasetsart University


ncbi_organism_name: Hyphomicrobium sp. MC1

ncbi_submitter: Genoscope


ncbi_country: Brazil: Eastern Amazon

ncbi_isolation_source: forest soil

ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Argentina

ncbi_isolation_source: Osteomyelitis

ncbi_organism_name: Staphylococcus aureus DAR3148

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: uncultured candidatus Porisulfidus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;x__Chromatiales incertae sedis;x__Candidatus Porisulfidus;x__environmental samples;s__uncultured candidatus Porisulfidus sp.


ncbi_organism_name: alpha proteobacterium BAL199

ncbi_submitter: Gordon and Betty Moore Foundation Microbial Genome Sequencing Project


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Damour

ncbi_submitter: University of Wyoming


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Fibrobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Firmicutes bacterium AF36-3BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF36-3BH


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: bacterium TMED88

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-3703

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Bariatricus sp. HCP28S3_H2

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: marine metagenome


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M990

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Tampa; Florida

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of South Florida


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Pacific Ocean: Palmyra Atoll

ncbi_isolation_source: shallow tropical waters; normally from coral reef substrate

ncbi_organism_name: Moorena producens PAL-8-15-08-1

ncbi_submitter: UCSD


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: feces

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: University of Bern


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1312


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Japan

ncbi_organism_name: Pseudomonas syringae pv. theae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. theae


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bacillota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Italy

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Universita degli Studi di Firenze


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Mycoplasma sp. Sp33II

ncbi_submitter: Institute of Microbiology


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 348935

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 226

ncbi_organism_name: Staphylococcus kloosii

ncbi_strain_identifiers: SNUC 4696

ncbi_submitter: University of Calgary


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: Portland State University


ncbi_country: Spain: Salinas de Anana

ncbi_isolation_source: hypersaline water

ncbi_organism_name: Anianabacter salinae

ncbi_submitter: UNIVERSITY OF THE BASQUE COUNTRY


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: Iceland

ncbi_isolation_source: Cave wall

ncbi_organism_name: Arthrobacter alpinus

ncbi_submitter: University of Akureyri


ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium RIFOXYA1_FULL_41_11


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Bifidobacterium hominis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Denmark

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Sulfurimonas sp.


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis


ncbi_country: China: Central China Fuwai Hospital of Zhengzhou University

ncbi_isolation_source: Urine from patient

ncbi_submitter: YangZhou university


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_assembly_name: Salmonella enterica CVM N43464 v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: USA: Minnesota

ncbi_isolation_source: Sludge

ncbi_organism_name: Ectopseudomonas mendocina

ncbi_submitter: Hamline University


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus hirae

ncbi_strain_identifiers: P7 C A28

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: Salty fermented fish sauce

ncbi_organism_name: Tetragenococcus halophilus


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Aeromicrobium panaciterrae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: China: Chifeng

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Vibrio gallaecicus


ncbi_organism_name: Phenylobacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_strain_identifiers: reuteri

ncbi_submitter: Guangxi University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: Candidatus Enterococcus stercoravium

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Edwardsiella sp. (in: enterobacteria)

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Hafniaceae;g__Edwardsiella;x__unclassified Edwardsiella (in: enterobacteria);s__Edwardsiella sp. (in: enterobacteria)


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Candidatus Fervidifonticultor octavus

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Humicultoraceae;g__Candidatus Fervidifonticultor;s__Candidatus Fervidifonticultor octavus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Humicultoraceae;g__Candidatus Fervidifonticultor;s__Candidatus Fervidifonticultor octavus


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-DS2

ncbi_organism_name: Cyanobacteria bacterium DS2.3.42

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium DS2.3.42


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC048191

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: drainage ditch

ncbi_organism_name: Geovibrio thiophilus

ncbi_submitter: Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: kimchi

ncbi_organism_name: Levilactobacillus yonginensis

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: AAFC


ncbi_organism_name: Streptococcus australis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces yanii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Corallococcus sp. RDP092CA

ncbi_submitter: Cardiff Metropolitan University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Blastopirellula sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Shinella sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_isolation_source: chicken caecal content


ncbi_assembly_name: freshwater MAG --- MJ110712B_bin-106

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: uncultured Blastocatellaceae bacterium


ncbi_organism_name: uncultured Staphylococcaceae bacterium


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA

ncbi_isolation_source: pasteurized milk

ncbi_organism_name: Paenibacillus sp. FSL H7-689

ncbi_submitter: Cornell University


ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: University of Mississippi Medical Center


ncbi_organism_name: Staphylococcus aureus M79654

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus schweitzeri

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii 25878_3

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bulgaria: Balkan Mountains

ncbi_isolation_source: home-made Bulgarian yoghurt

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_country: USA: New Jersey

ncbi_isolation_source: Dental plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: wastewater

ncbi_submitter: University of Zurich


ncbi_country: China:Maotai town

ncbi_isolate: Daqu

ncbi_isolation_source: High-temperature daqu

ncbi_organism_name: Solibacillus daqui

ncbi_submitter: Jiangnan University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG12798

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Harvard University


ncbi_country: China: Sichuan

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: Bangladesh: Chittagong

ncbi_isolation_source: Chrysanthemum rhizosphere

ncbi_organism_name: Serratia sp. PGPR-27

ncbi_submitter: CU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. PGPR-27


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_country: Poland: Bialystok

ncbi_isolation_source: feaces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Medical University of Bialystok


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Luteibacter sp. 9135

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Southwest-basin of Lake Grosse Fuchskuhle

ncbi_isolation_source: freshwater

ncbi_organism_name: Novosphingobium sp. FSW06-99

ncbi_submitter: Bielefeld University


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with photo-oxidized crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_country: Switzerland: Berne

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: aspirate

ncbi_organism_name: Staphylococcus aureus M1328

ncbi_submitter: Broad Institute


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: SCOPE


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Fusobacterium varium

ncbi_submitter: EMG


ncbi_country: South Africa: Vryburg

ncbi_isolation_source: Gold mine soil

ncbi_organism_name: Pseudomonas iranensis

ncbi_submitter: North West University


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobium sp. CFD-1

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Italy

ncbi_isolation_source: bakery starter

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: CIRM-BIA 2235

ncbi_submitter: Brigham Young University


ncbi_country: South Africa: Durban

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Succinimonas sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: La Mesa; CA

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_isolation_source: microbial mat

ncbi_organism_name: Oscillatoriales cyanobacterium PMM_0001

ncbi_submitter: University of Liege


ncbi_organism_name: Alcaligenes sp. DN25

ncbi_submitter: GuangXi University


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1176

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1176


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia hominis


ncbi_organism_name: Streptomyces misionensis

ncbi_submitter: Brazilian Microbiome Project


ncbi_country: Norway

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pedosphaera parvula Ellin514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Right guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: China Agricultural University


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Merdimonas sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Streptomyces sp. ID05-18

ncbi_submitter: Oregon State University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: Polystyrene-feeding group superworm feces

ncbi_organism_name: Prescottella equi

ncbi_submitter: The University of Queensland


ncbi_country: South Korea: Incheon

ncbi_isolation_source: Sea water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Seoul National University


ncbi_organism_name: Candidatus Liberibacter solanacearum

ncbi_strain_identifiers: HenneA

ncbi_submitter: North Dakota State University


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Instituto de Quimica

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Washington


ncbi_organism_name: Dehalogenimonas sp. THU2

ncbi_submitter: Tsinghua University


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS LIN-11

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS LIN-11

ncbi_submitter: The University Hong Kong


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Fundicoccus sp. Sow4_F4

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Synechococcales cyanobacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Thiohalophilus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Institute of Antibiotics


ncbi_organism_name: Pseudomonas vancouverensis


ncbi_organism_name: Acinetobacter variabilis

ncbi_submitter: Shenzhen people's hospital


ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-9048

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Firmicutes bacterium OM04-13BH

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium OM04-13BH


ncbi_country: USA:Alaska; North Slope; Schrader Bluff formation

ncbi_isolation_source: oil reservoir sample SB1

ncbi_organism_name: Synergistales bacterium 57_84

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_organism_name: Bacillus altitudinis


ncbi_organism_name: Leuconostoc mesenteroides subsp. dextranicum

ncbi_submitter: University College Cork


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Paraburkholderia dilworthii

ncbi_submitter: University of Illinois at Chicago


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: SCOPE


ncbi_country: USA

ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Yersinia massiliensis

ncbi_submitter: PulseNet Next Generation Subtyping Methods Unit


ncbi_isolation_source: Soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. PDM01

ncbi_submitter: University of Chicago


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Bangladesh

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cardiff University


ncbi_country: Italy: Europe; Sicily; Ragusa

ncbi_isolation_source: tomato rhizosphere

ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: Consiglio Nazionale delle Ricerche (CNR)


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Corynebacterium variabile


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Maribacter litoralis

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacillus inaquosorum


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_country: China: Sichuan

ncbi_isolation_source: liver

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan university


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Gemmata sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Pseudomonas atacamensis

ncbi_submitter: University of Belgrade, Faculty of Biology


ncbi_organism_name: Desulfobulbaceae bacterium UBA5173

ncbi_submitter: University of Queensland


ncbi_country: China: SiChuan

ncbi_isolation_source: pig farm

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_country: France: APHM

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_country: China: Shangri-La

ncbi_organism_name: Bacillus vallismortis

ncbi_submitter: Hubei Academy of Agricultural Sciences


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Terryibacteriota;s__Candidatus Terrybacteria bacterium RIFCSPHIGHO2_01_FULL_48_17


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Foggia


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Portugal

ncbi_isolation_source: hemoculture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Max Rubner-Institut


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Toho university


ncbi_country: Atlantic Ocean: North Atlantic

ncbi_organism_name: Pseudoalteromonas galatheae

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: China: Jinhua

ncbi_isolation_source: puncture fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinhua Central Hospital


ncbi_isolation_source: Australian drinking water treatment works  sand filter

ncbi_organism_name: Sphingopyxis sp. Geo24

ncbi_submitter: Cardiff University


ncbi_organism_name: Caldilineales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Virgibacillus pantothenticus

ncbi_submitter: University of Galway


ncbi_organism_name: Escherichia coli JB1-95

ncbi_submitter: E. coli Reference Center


ncbi_country: China: Ningxia Province

ncbi_isolation_source: soil

ncbi_organism_name: Pseudoduganella flava

ncbi_submitter: University of Tuebingen


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;s__Candidatus Nealsonbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_37_68


ncbi_country: USA: San Francisco Bay

ncbi_isolate: UCB

ncbi_isolation_source: Perchlorate-reducing enrichment

ncbi_organism_name: Marinobacter vinifirmus

ncbi_strain_identifiers: UCB

ncbi_submitter: University of California, Berkeley


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_country: New Zealand: Palmerston North

ncbi_isolation_source: Storm water drain

ncbi_submitter: Massey University


ncbi_assembly_name: Salmonella enterica CVM N32779-R v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_organism_name: Alicyclobacillus contaminans DSM 17975


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: fish

ncbi_organism_name: Obesumbacterium proteus

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Lactobacillus apis

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Niallia sp. MER 6

ncbi_strain_identifiers: MER 6

ncbi_submitter: Jet Propulsion Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Niallia;x__unclassified Niallia;s__Niallia sp. MER 6


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: China: Guangdong

ncbi_isolation_source: forest soil

ncbi_organism_name: Rhodanobacter sp. DHB23

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Dethiobacter sp.

ncbi_submitter: University of Utah


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China

ncbi_submitter: College of Life Science


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_assembly_name: IMG-taxon 2622736476 annotated assembly

ncbi_organism_name: Dyadobacter koreensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Jinan

ncbi_isolation_source: Bumble bee gut

ncbi_organism_name: Gilliamella sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: MO

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bredeney


ncbi_organism_name: Treponema sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Streptomyces harbinensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: China CDC


ncbi_organism_name: Bacteroides uniformis


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: Beebe hydrothermal vent plume at depth 4869m

ncbi_organism_name: Proteobacteria bacterium UBA2008

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA2008


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Desulfobacter sp.

ncbi_submitter: University of Waterloo


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin49

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: KAP bin49

ncbi_submitter: Monash University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Heyndrickxia faecalis

ncbi_submitter: Christian Medical College


ncbi_submitter: Penn State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil with plant cover day20_CT

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Streptomyces scopuliridis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Viet Nam:Hanoi

ncbi_organism_name: Escherichia coli

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: Urine Cath

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_country: China: Fujian province; Fuzhou city

ncbi_isolation_source: heart blood; lungs; ascites; articular fluid; brain tissue samples

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Haemophilus parasuis


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: France

ncbi_isolation_source: grape must

ncbi_organism_name: Leuconostoc suionicum

ncbi_strain_identifiers: CIRM-BIA 2126

ncbi_submitter: Brigham Young University


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Greece:Thermopyles geothermal spring

ncbi_isolation_source: geothermal water

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: University of Thessaly


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_submitter: SRCAMB


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Arenicella sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: South Korea:Chungcheongnam-do

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Yonsei University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: EMG


ncbi_country: Panama: Bocas del Toro; Punta Caracol

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Silicimonas sp.

ncbi_submitter: Stony Brook University


ncbi_assembly_name: freshwater MAG --- Umea3_bin-4221

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Castellaniella ginsengisoli

ncbi_submitter: The University of Georgia


ncbi_isolation_source: nasopharynx


ncbi_country: Australia: Blackall

ncbi_isolation_source: thermophilic microbial mat colonizing an outflow from a Great Artesian Basin bore well

ncbi_organism_name: Anoxybacillus sp. BCO1

ncbi_submitter: Microbial Gene Research and Resources Facility


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Nottingham Trent University


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: zhejiang University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: Guangxi University


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FIOCRUZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Tunisia

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: ANSES


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 195 (3-7155360)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 195 (3-7155360)


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_submitter: EMG


ncbi_isolation_source: Human (gut)

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Spain

ncbi_isolation_source: intestinal mucus of brown trout

ncbi_organism_name: Lactococcus cremoris subsp. tructae

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Litoreibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: China: Beijing

ncbi_isolation_source: intestine contents

ncbi_organism_name: Romboutsia lituseburensis

ncbi_strain_identifiers: CML 137

ncbi_submitter: China Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Devosia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Guangdong

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_strain_identifiers: CH 18

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_assembly_name: Rumen uncultured genome RUG14653

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: fecal sample

ncbi_organism_name: Vagococcus lutrae

ncbi_submitter: University of Zurich


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:411

ncbi_submitter: DTU


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SC


ncbi_country: Czech Republic: Praha

ncbi_isolation_source: urine

ncbi_submitter: University of Veterinary Sciences


ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Oceanicaulis sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_assembly_name: BMS

ncbi_organism_name: Priestia megaterium

ncbi_strain_identifiers: BMS

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_country: Nigeria

ncbi_isolation_source: Ogi (red sorghum)

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Gallionella sp.

ncbi_submitter: University of Waterloo


ncbi_country: Laos

ncbi_isolation_source: River

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Bern


ncbi_country: Brazil: Recife

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aggeu Magalhaes Institute


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Tenacibaculum sp.

ncbi_submitter: University of Georgia


ncbi_country: Canada

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_organism_name: Helicobacter ganmani


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-2955

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_organism_name: uncultured bacterium


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Plantactinospora sp. CA-294935

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptomyces sp. NPDC059694


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4567_28 depth 0-3 cm

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Tongji University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-2365

ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universiteit Gent


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: Canada: Alberta

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Rifle; Colorado

ncbi_isolation_source: sediment at 5m depth

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium CSP1-7


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V25_P4S6T154

ncbi_submitter: Instituto de ecologia


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_submitter: Kiel University


ncbi_country: China

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_isolation_source: plant environment

ncbi_submitter: Texas Tech University


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Bioplatforms Australia


ncbi_country: India: ICRISAT campus in Hyderabad

ncbi_isolation_source: compost [ENVO:00002170]

ncbi_organism_name: Streptomyces odorifer

ncbi_submitter: ICRISAT


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Adlercreutzia caecimuris


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis


ncbi_isolation_source: environment

ncbi_organism_name: Lactobacillus delbrueckii subsp. delbrueckii

ncbi_submitter: Korea University


ncbi_country: United Kingdom

ncbi_isolation_source: seawater

ncbi_submitter: Ocean university of China


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Australia: Northern Territory; North Australian Desert

ncbi_isolate: NAD bin13

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: NAD bin13

ncbi_submitter: Monash University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: France

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 22825

ncbi_submitter: Broad Institute


ncbi_isolation_source: large intestines

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of California Riverside


ncbi_country: USA: San Antonio

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: organic spinach

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_country: USA: Tennessee

ncbi_isolation_source: root

ncbi_organism_name: Polaromonas sp. CF318

ncbi_submitter: Oak Ridge National Lab


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus GGMC6004


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Exercitatus varius

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: China: Nanchang; Poyang Lake

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_country: Taiwan

ncbi_isolation_source: bile

ncbi_organism_name: Shewanella algae

ncbi_strain_identifiers: ACCC

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Actinobacillus porcinus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Roseobacter sp. AzwK-3b

ncbi_submitter: Moore Foundation


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Broiler chicken

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zoonosis Science Center


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Australia: Brisbane

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: The University of Queensland


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7099

ncbi_submitter: University of Queensland


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Norway

ncbi_isolation_source: FRDC_Fjaler soil; pH 3.7

ncbi_organism_name: Rhodanobacter sp. B04

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_country: USA

ncbi_isolation_source: ileum

ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: University of Minnesota


ncbi_country: Israel

ncbi_isolation_source: urine

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Israel Institute for Biological Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bartonella henselae

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0311

ncbi_submitter: Broad Institute


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: British Columbia

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: South Carolina

ncbi_organism_name: Enterococcus diestrammenae

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: Canada: New Brunswick

ncbi_isolation_source: Imported/domestic retail Oyster

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_country: India: Coimbatore

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_strain_identifiers: CB

ncbi_submitter: Navsari Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: JCVI


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter zhangjianzhongii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Acutalibacter sp.

ncbi_submitter: Biomin Research Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Xiapu

ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Qipengyuania aurantiaca

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Verrucomicrobia subdivision 6 bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Verrucomicrobia subdivision 6;x__unclassified Verrucomicrobia subdivision 6;s__Verrucomicrobia subdivision 6 bacterium


ncbi_country: Canada: Buffalo Point; MB

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Planococcus citreus

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CN03


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: CNRS UMR6197

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: Tsinghua University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Aeromonas salmonicida subsp. masoucida

ncbi_submitter: Pukyong National University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: cheese rind

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: INRA


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Aarhus University


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Rutgers University


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: oil contaminated soil

ncbi_organism_name: Desemzia sp. C1

ncbi_submitter: Gwangju Institute of Science and Technology


ncbi_organism_name: Atlantibacter sp.


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shandong University


ncbi_country: Germany: Cuxhaven

ncbi_isolation_source: Lohmann Animal Health

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Elanco Animal Health


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Schaedlerella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Companilactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute