ncbi_organism_name: Vibrio harveyi

ncbi_strain_identifiers: Kef 22

ncbi_submitter: Hellenic Centre for Marine Research


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: China: Fuxian Lake; Yuxi

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


gtdb_representative: t

ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_level: Scaffold

ncbi_isolate: AOP42_A2_surf _bin _17

ncbi_organism_name: Agrococcus casei

ncbi_strain_identifiers: AOP42_A2_surf _bin _17

ncbi_submitter: Genoscope


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Croatia: Varazdin

ncbi_isolation_source: Brassica oleracea var. capitata cultivar Varazdinski

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: IGA Technology Services Srl


ncbi_country: Germany

ncbi_isolation_source: poultry meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Veterinary Research Institute Brno


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium leguminosarum;x__Rhizobium leguminosarum bv. trifolii;x__Rhizobium leguminosarum bv. trifolii CC278f


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Singapore

ncbi_isolation_source: liver abscess

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: National University of Singapore


ncbi_assembly_level: Complete Genome

ncbi_country: Chile: Aysen

ncbi_isolation_source: liver

ncbi_organism_name: Renibacterium salmoninarum

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Small intestine

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Bryobacterales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: vagina

ncbi_organism_name: Actinomyces sp. S4-C9

ncbi_submitter: JCVI


ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Cold smoked salmon brine injected

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_assembly_name: freshwater MAG --- MJ120730A_bin-610

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Lund University


gtdb_type_species_of_genus: t

ncbi_country: Tunisia: Korbous

ncbi_isolation_source: hot spring

ncbi_organism_name: Thermospira aquatica

ncbi_refseq_category: reference genome

ncbi_submitter: IRD

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Chromosome

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_assembly_name: NDB2Meth4 draft genome assembly

ncbi_isolation_source: Coal seam gas extraction bore well

ncbi_organism_name: Hyphomicrobium sp. NDB2Meth4

ncbi_submitter: Griffith University


ncbi_country: China: Shenzhen

ncbi_organism_name: Eubacterium sp. AM49-13BH

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. AM49-13BH


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides acidifaciens


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA7165

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_organism_name: Candidatus Portiera aleyrodidarum TV

ncbi_strain_identifiers: TV

ncbi_submitter: Yale University

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Johnevansiales;f__Candidatus Johnevansiaceae;g__Candidatus Portiera;s__Candidatus Portiera aleyrodidarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Johnevansiales;f__Candidatus Johnevansiaceae;g__Candidatus Portiera;s__Candidatus Portiera aleyrodidarum;x__Candidatus Portiera aleyrodidarum TV


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Soudan Iron Mine; Minnesota

ncbi_isolation_source: brine fluids

ncbi_organism_name: Marinilabilia sp.

ncbi_submitter: University of Michigan


ncbi_country: Brazil

ncbi_isolation_source: Herd environment

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Russia: Kandalaksha Bay

ncbi_isolation_source: marine water

ncbi_organism_name: Dethiosulfovibrio marinus

ncbi_submitter: Marquette University


ncbi_organism_name: uncultured Fibrobacteria bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;c__Fibrobacteria;x__environmental samples;s__uncultured Fibrobacteria bacterium


ncbi_isolation_source: freshwater

ncbi_organism_name: Acinetobacter pittii


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial washings

ncbi_organism_name: Staphylococcus aureus M0890

ncbi_submitter: Broad Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Altibacter sp.

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudothermotoga sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Zhuhai

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Jinan University


ncbi_country: USA: White Oak Rive Estuary; North Carolina

ncbi_isolation_source: Sulfate-methane transisition zone estuary sediments 16-26 cm

ncbi_submitter: University of Texas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__candidate division Zixibacteria bacterium SM23_73_3


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Wroclaw University of Environmental and Life Sciences


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Proteus sp. G2609

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2609


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SRCAMB


ncbi_country: USA: Texas

ncbi_isolation_source: Secondary wastewater

ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Tenacibaculum soleae

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Capital Institute of Pediatrics


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Polymyxin B

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Queensland


ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: intestinal content

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: ChinaCDC


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Phocaeicola vulgatus


ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa: Soweto; Gauteng

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Anaerococcus prevotii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Germany

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Pseudoxanthomonas kaohsiungensis

ncbi_submitter: Xiamen University


ncbi_isolation_source: microbes were collected at JL-Dive100-S03

ncbi_organism_name: Desulfuromusa sp.

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptomyces sioyaensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Plantactinospora endophytica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Nocardia amikacinitolerans


ncbi_organism_name: Reichenbachiella sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: EMG


ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Enterococcus durans


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_organism_name: Campylobacter curvus


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Corynebacterium sp. LK2596

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Variovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Scrofimicrobium appendicitidis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: MS

ncbi_isolation_source: other

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Nonlabens dokdonensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate and no molasses at 250 mg/L thiocyanate

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Parabacteroides sp. PFB2-22


ncbi_assembly_name: Rumen uncultured genome RUG10428

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: Brazil: Niteroi

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Santa Clara University


ncbi_organism_name: Serratia marcescens


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: anastomotic tissue

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chicago


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong (CityU)


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_isolation_source: water

ncbi_organism_name: Proteus vulgaris

ncbi_submitter: Shandong First Medical University


ncbi_country: Viet Nam: Khanh Hoa

ncbi_isolation_source: muscle

ncbi_organism_name: Nocardia seriolae

ncbi_submitter: University of the sunshine Coast


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: China: Deyang; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Chryseobacterium sp. JK1

ncbi_submitter: Chungbuk National University


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1289546

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWA2_43_66


ncbi_country: South Korea

ncbi_isolation_source: Bovine digital dermatitis

ncbi_organism_name: Treponema pedis

ncbi_submitter: Sunchon National University


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Colombia: Santa Marta; Magdalena

ncbi_organism_name: Bradyrhizobium sp. CIAT3101

ncbi_submitter: Murdoch University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Mesomycoplasma moatsii

ncbi_submitter: Anses - Laboratoire de Lyon


ncbi_country: India: Laitumkhrah; Shillong; Meghalaya

ncbi_isolation_source: Pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_organism_name: bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Hoylesella buccalis

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA; USA

ncbi_organism_name: Staphylococcus aureus M1260

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: NHGRI/NIH


ncbi_submitter: National institutes of Food and Drug Control


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chinese Academy of Agriculture Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Algeria: Oran

ncbi_isolation_source: olive tree plantation soil

ncbi_organism_name: Nocardiopsis sp. NRRL B-16309

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: lung

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Ares Genetics


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Australia: WA; Oasis Farms Manbijin 5

ncbi_organism_name: Mesorhizobium sp. WSM4935

ncbi_submitter: Murdoch University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolate: SPRUCE 96

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_strain_identifiers: SPRUCE 96

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ballast tank

ncbi_organism_name: Variovorax sp.

ncbi_submitter: Shandong university


ncbi_country: France

ncbi_isolation_source: apple juice

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: BIA JP8

ncbi_submitter: Brigham Young University


ncbi_country: USA: Florida

ncbi_organism_name: Stenotrophomonas sp. RS-48

ncbi_submitter: LANGEBIO


ncbi_country: USA: NE

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Thiothrix unzii

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom

ncbi_organism_name: Blautia obeum

ncbi_submitter: SC


ncbi_isolation_source: burned soil

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Colorado State University


ncbi_country: Indian Ocean

ncbi_isolation_source: culture of alga Picochlorum sp.

ncbi_organism_name: Phaeodactylibacter luteus

ncbi_submitter: University of Tasmania


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Alloprevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Memphis; TN

ncbi_isolation_source: stool sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. B6(2022)

ncbi_submitter: University of Silesia


ncbi_organism_name: Paenibacillus sp. FSL K6-1566

ncbi_submitter: Penn State


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolate: AOP33_2_surf _bin _20

ncbi_organism_name: Brachybacterium tyrofermentans

ncbi_strain_identifiers: AOP33_2_surf _bin _20

ncbi_submitter: Genoscope


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bartonella rochalimae

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: dtu national food institute


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Sichuan

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: PVC group bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_country: China

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: China: Guangzhou

ncbi_isolation_source: anal swab

ncbi_submitter: GUANGZHOU CDC,China


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_country: Russia

ncbi_isolation_source: soda solonchak soil

ncbi_organism_name: Alkalihalobacterium alkalinitrilicum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_submitter: Yangzhou University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium CG1_02_58_44


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: freshwater MAG --- A2_bin-0915

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: bone

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_country: Singapore: Jurong West

ncbi_isolation_source: activated sludge

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: Bangladesh: Chittagong

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Bangladesh Council of Scientific and Industrial Research (BCSIR)


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC048352

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Chile: Santiago

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolate: SPRUCE 163

ncbi_organism_name: Terriglobia bacterium

ncbi_strain_identifiers: SPRUCE 163

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;s__Candidatus Jorgensenbacteria bacterium GW2011_GWA2_45_9


ncbi_country: China: Guangdong; Yunfu

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Aquiflexum sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Xiamen University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W62972

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Conchiformibius steedae DSM 2580

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: sulfide-containing well water

ncbi_organism_name: Thiothrix nivea DSM 5205


ncbi_country: Canada: Ontario

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Control Grass (No Manure)

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: GC T1 LAM CEF 2

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: South Korea

ncbi_isolation_source: Beach sand

ncbi_organism_name: Thalassotalea sp. LPB0316

ncbi_submitter: Korea University


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Israel

ncbi_isolation_source: ankle joint of an 8 month old boy with septic arthritis

ncbi_organism_name: Kingella kingae PYKK081

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Japan: Ibaraki

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_organism_name: Enterococcus faecalis V583

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Vagococcus lutrae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dellaglioa algida

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_country: Italy: Apulia; Bari

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bari "Aldo Moro", Bari, Italy


ncbi_country: Sweden

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Swedish Defence Research Agency (FOI)


ncbi_country: France: Tours

ncbi_isolation_source: infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Hangzhou

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Pittsburgh


ncbi_country: Italy

ncbi_isolation_source: nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: swine manure slurry from storage pit

ncbi_organism_name: Peptostreptococcus russellii

ncbi_submitter: Rutger University


ncbi_strain_identifiers: ISU 881

ncbi_submitter: USDA-ARS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Thiohalomonadaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Kitasatospora cinereorecta

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Paenibacillus oryzisoli

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Streptomyces griseoluteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Angelakisella sp.


ncbi_organism_name: Avibacterium avium

ncbi_strain_identifiers: SCPM-O-B-15509 (Shiryaevo PSK-3)

ncbi_submitter: SRCAMB


ncbi_organism_name: Ruminococcus callidus


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: anaerobic digester filtrate obtained from the belt filter press of the CVWRF wastewater treatment plant

ncbi_organism_name: Anaerolineae bacterium UTCFX2

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__unclassified Anaerolineae;s__Anaerolineae bacterium UTCFX2


ncbi_organism_name: uncultured Leptospiraceae bacterium


ncbi_organism_name: Salmonella sp. NW364

ncbi_submitter: Sichuan University


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Hungary: Kecskemt

ncbi_isolation_source: Anaerobic sludge from Kecskemt Biogas Plant

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Szeged


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Microbacterium profundi


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__candidate division WS6 bacterium GW2011_GWE2_33_157


ncbi_country: France: Besancon

ncbi_isolation_source: Bronchial aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Escherichia coli

ncbi_submitter: Paris Saclay University


ncbi_country: Iran: Tehran

ncbi_isolation_source: groundwater

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: NY

ncbi_isolation_source: orbital abscess post-eye removal

ncbi_organism_name: Actinomyces sp. 187325

ncbi_submitter: Cornell University


ncbi_country: Germany

ncbi_isolation_source: Ixodes ricinus larvae cultured in MKP-F (human serum)

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: AMC (Amsterdam, The Netherlands) and CRIE (Moscow, Russia)


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 2 20 to 25cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolate: cow fecal

ncbi_strain_identifiers: cow fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Pseudobutyrivibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Israel: Tel-Aviv

ncbi_submitter: Tel-Aviv University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: The James Hutton Institute


ncbi_country: Germany: NRW

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Cologne


ncbi_country: USA: PA

ncbi_isolation_source: intestine mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: VA

ncbi_isolation_source: expectorated sputum

ncbi_organism_name: Gemella haemolysans

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA

ncbi_isolation_source: Raw Milk

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Algeria

ncbi_isolation_source: Bathing waters

ncbi_organism_name: Providencia stuartii

ncbi_submitter: Institut Pasteur


ncbi_country: Denmark: Capital Region of Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus oralis subsp. oralis

ncbi_submitter: Slagelse Hospital


ncbi_organism_name: Pusillimonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Tibet

ncbi_isolation_source: hot spring

ncbi_organism_name: Tabrizicola caldifontis

ncbi_submitter: Sun Yat-Sen University


ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Cellulosilyticum sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Second Affiliated Hospial of Zhejiang University, School of Medicine


ncbi_organism_name: Lactiplantibacillus plantarum subsp. plantarum

ncbi_submitter: Gachon University


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Cupriavidus sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_submitter: Instituto Nacional de Salud


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Synechococcus sp. cluster2_bin.209

ncbi_submitter: Universidad Andres Bello


ncbi_country: Cambodia:Phnom Penh

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: AMR research center, National Institute of Infectious Diseases


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-266

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Anaerolineae bacterium

ncbi_strain_identifiers: new MAG-266

ncbi_submitter: Micoorganism


ncbi_isolation_source: derived from VB111

ncbi_submitter: Universite de Sherbrooke

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_country: USA: Twanoh State Park

ncbi_isolation_source: plankton

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_organism_name: Enterococcus faecium EnGen0372

ncbi_strain_identifiers: VAN 476

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Tecnologico de Monterrey


ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Enterococcus alcedinis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Spyradenecus faecavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Lentisphaerales;f__Lentisphaeraceae;x__Lentisphaeraceae incertae sedis;g__Candidatus Spyradenecus;s__Candidatus Spyradenecus faecavium


ncbi_country: China: Beijing

ncbi_organism_name: Pectobacterium polaris

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_country: USA: Wyndmoor; Pennsylvania

ncbi_isolation_source: Retail chichen

ncbi_organism_name: Campylobacter coli

ncbi_submitter: USDA


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_country: China: Yellow Sea

ncbi_isolation_source: sea water

ncbi_organism_name: Arenibacter sp. TNZ

ncbi_strain_identifiers: TNZ

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Aquibacillus rhizosphaerae

ncbi_submitter: Inner Mongolia University


ncbi_country: Sweden

ncbi_isolation_source: bronchial

ncbi_organism_name: Mycobacterium tuberculosis BTB10-308

ncbi_submitter: Broad Institute


ncbi_country: China: South China Sea

ncbi_isolation_source: South China Sea

ncbi_organism_name: Qipengyuania citrea

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Supermarket

ncbi_submitter: LSHTM


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Parabacteroides sp. D13


ncbi_isolate: WT-DSMZ

ncbi_organism_name: Gluconobacter oxydans 621H

ncbi_strain_identifiers: WT-DSMZ

ncbi_submitter: RWTH Aachen


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Netherlands: Haarlem

ncbi_isolation_source: Likely Sputum

ncbi_organism_name: Mycobacterium tuberculosis str. Haarlem

ncbi_strain_identifiers: Haarlem

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis str. Haarlem


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Caldilinea sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-03795

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Nitratifractor sp.


ncbi_organism_name: uncultured Syntrophaceae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Acidobacterium sp.


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Vreelandella rituensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Noviherbaspirillum sp.

ncbi_submitter: EMG


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella parvula

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Streptomyces sp. NPDC012835

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China

ncbi_isolation_source: Blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Ruijin Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Peribacillus sp. V2I11


ncbi_country: China: Shenzhen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Southern University of Science and Technology


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B1-1-6

ncbi_submitter: Curtin University


ncbi_country: China: Qinghua

ncbi_isolation_source: crude oil

ncbi_organism_name: Synergistaceae bacterium UBA1876

ncbi_submitter: University of Queensland


ncbi_submitter: University of central Florida


ncbi_isolation_source: freshwater

ncbi_organism_name: Shigella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Vampirovibrio sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Segatella copri


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Italy

ncbi_isolation_source: environmental swab sponge dairy facility blue cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Dongxiang wild rice

ncbi_organism_name: Pseudochrobactrum sp. XF203

ncbi_submitter: College of life sciences


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: University of Oklahoma


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Kenya: Nairobi

ncbi_isolation_source: Vaginal discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Indo-Africa dengue sequencing, vaccine development and capacity building


ncbi_assembly_name: freshwater MAG --- E14_bin-2588

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: drainage fluid

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Maribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paenibacillus albidus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA71

ncbi_submitter: Broad Institute


ncbi_organism_name: Morganella morganii

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Cardiobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Clostridium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: University of South Africa


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Carnobacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Gaungdong

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Thioclava sp. FCG-A2

ncbi_submitter: XIAMEN University


ncbi_country: Indonesia: Cisolok;West Java

ncbi_isolation_source: Gravely sediment from Non-saline neutral hot spring sediments

ncbi_organism_name: Rhodococcus indonesiensis

ncbi_submitter: Indonesia Endowment Fund for Education (LPDP)


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Idiomarina sp. UBA4206

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Botucatu

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: CIRM-BIA 264

ncbi_submitter: Brigham Young University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Zhejiang provincial center for disease control and prevention


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Synechococcus sp. AG-673-F03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Guizhou; Liupanshui; Liuzhi

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_organism_name: Acidithiobacillus sp. VAN18-2

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Halieaceae bacterium UBA5721


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Croceitalea sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolate: metabat2_coassembly_bwa.852 MAG

ncbi_organism_name: uncultured Emergencia sp.

ncbi_strain_identifiers: metabat2_coassembly_bwa.852 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: anaerobic bioreactor

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_country: India

ncbi_isolation_source: Nosocomial

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Streptomyces sp. NPDC101230

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Gallionella sp.

ncbi_submitter: University of Waterloo


ncbi_country: Japan

ncbi_isolation_source: soil sample

ncbi_organism_name: Microbacterium aoyamense

ncbi_submitter: JIUJIANG UNIVERSITY


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_isolate: AOP22_C1_surf _bin _17

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: AOP22_C1_surf _bin _17

ncbi_submitter: Genoscope


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;x__unclassified Candidatus Zambryskiibacteriota;s__Candidatus Zambryskiibacteriota bacterium


ncbi_organism_name: Gallibacterium anatis

ncbi_strain_identifiers: SCPM-O-B-15503 (Shiryaevo PSK-1)

ncbi_submitter: SRCAMB


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Desulfomonilaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Streptomyces sp. NPDC087529

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas syringae pv. solidagae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. solidagae


ncbi_country: Greece: Aegean Sea

ncbi_isolation_source: marine sponge microbiome

ncbi_organism_name: Leptothoe spongobia TAU-MAC 1115

ncbi_strain_identifiers: TAU-MAC 1115

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: Adlercreutzia sp. ZJ141

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG14538

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Actinoplanes campanulatus

ncbi_strain_identifiers: CECT 3287

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Right Foot Wound

ncbi_organism_name: Pseudomonas tohonis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD15762

ncbi_submitter: Broad Institute


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Makerere University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Prolixibacteraceae bacterium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Mesorhizobium sp. SP-1A

ncbi_submitter: Sangji University


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Edaphobacter aggregans

ncbi_submitter: University Duisburg-Essen


ncbi_country: Spain

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_submitter: University of Toronto


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas denitrificans (nom. rej.)

ncbi_submitter: University of Washington


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: LM07-01145 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: United Kingdom: England

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_country: Argentina

ncbi_organism_name: Xanthomonas vesicatoria

ncbi_strain_identifiers: Bv 5-3A

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Mesorhizobium album

ncbi_submitter: University of Pretoria


ncbi_isolation_source: lake water

ncbi_organism_name: Aurantimonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Poland

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NRRL S-1896

ncbi_strain_identifiers: NRRL S-1896

ncbi_submitter: University of Illinois


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Aalborg University


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_submitter: University of Ibadan, Nigeria


ncbi_country: USA: HI

ncbi_isolation_source: other

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Harbin Veterinary Research Institute


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Lentzea roselyniae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Anhui Medical University; Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Seto Island Sea

ncbi_organism_name: Sulfitobacter sp. S32

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: fecal sample

ncbi_organism_name: Extibacter muris

ncbi_submitter: University of Chicago


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Food Safety


ncbi_assembly_name: freshwater MAG --- Loc090519-5m_bin-0693

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_67_20


ncbi_submitter: Wenzhou medical university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: patient

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_assembly_name: freshwater MAG --- KTt_bin-1993

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_country: USA:New York;Manhattan

ncbi_isolation_source: Xenic protist cell culture

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: American Museum of Natural History


ncbi_country: China: coastal sediment close to a coal-fired power station; Qingdao

ncbi_isolation_source: coastal sediment

ncbi_organism_name: Corynebacterium marinum DSM 44953

ncbi_submitter: CeBiTec, Bielefeld University


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aarhus University


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: EMG


ncbi_organism_name: Treponema denticola OTK

ncbi_strain_identifiers: OTK

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_organism_name: Pyruvatibacter sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_assembly_name: Rumen uncultured genome RUG12803

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea

ncbi_isolation_source: porcine feces

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Seoul National University


ncbi_assembly_name: Staphylococcus aureus SA10-LAU WGS

ncbi_country: Lebanon: Byblos

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus SA10-LAU

ncbi_submitter: Lebanese American University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: University of Southern California

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis


ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Pannonibacter indicus

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_submitter: University of Michigan


ncbi_organism_name: Streptomyces sp. NPDC002680

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Methylobacterium tarhaniae


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces globisporus


ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Brevibacterium sediminis

ncbi_submitter: University of Fribourg


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Metabacillus indicus

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_assembly_name: freshwater MAG --- YR_bin-1718

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: University of Utah


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Granulosicoccus sp.

ncbi_submitter: Ocean University of China


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Limosilactobacillus reuteri CF48-3A

ncbi_submitter: BCM


ncbi_isolation_source: gut

ncbi_organism_name: Halocynthiibacter halioticoli

ncbi_submitter: Shan Dong University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Verrucomicrobia subdivision 6 bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Verrucomicrobia subdivision 6;x__unclassified Verrucomicrobia subdivision 6;s__Verrucomicrobia subdivision 6 bacterium


ncbi_assembly_name: IMG-taxon 2690315679 annotated assembly

ncbi_organism_name: Terriglobus roseus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Corynebacterium sp. HMSC077C02

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 2; 20cm depth; 6 days after first rain event (27mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium 13_2_20CM_54_12


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Weinan

ncbi_isolation_source: rectum

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NWAFU


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: Spain: Barcelona; Llobregat river

ncbi_isolation_source: water

ncbi_organism_name: Mycolicibacterium alvei

ncbi_submitter: Uppsala University


ncbi_organism_name: Bacillus sp. FSL W8-0940

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL W8-0940


ncbi_country: China: Beijing

ncbi_isolation_source: pig

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Mariniblastus fucicola

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Germany: Aachen

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Gemmiger gallinarum

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: China: Hubei

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_country: Spain: Asturias

ncbi_organism_name: Yaniella sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus WAMC6081

ncbi_submitter: Broad Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: solid retention time of 6 days

ncbi_organism_name: Mesosutterella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus faecium LA4B-2

ncbi_submitter: The Genome Institute


ncbi_organism_name: Oceanobacillus picturae

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Promicromonospora sukumoe

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: China: Zhejiang

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter sp. YH12210

ncbi_submitter: South China Agricultural University


ncbi_country: Spain: Madrid

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: Kenya

ncbi_isolation_source: fecal sample

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Lacipirellula sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.