ncbi_organism_name: uncultured Rhodocyclaceae bacterium

ncbi_submitter: Centre for Microbiome Research


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Escherichia coli

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_country: Germany

ncbi_isolation_source: Prepuce

ncbi_organism_name: Rodentibacter caecimuris

ncbi_submitter: University of Copenhagen


ncbi_country: USA

ncbi_isolation_source: Food Associated Environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;o__Mycoplasmoidales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma parvum;x__Ureaplasma parvum serovar 1;x__Ureaplasma parvum serovar 1 str. ATCC 27813


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Marisediminitalea sp.

ncbi_submitter: Xiamen University


ncbi_assembly_level: Scaffold

ncbi_country: Spain: Malaga; Benajarafe

ncbi_isolation_source: mango apical buds from mango crop farm

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Malaga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: China

ncbi_isolation_source: ICU

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_country: Mexico

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Desulfuromonas sp.

ncbi_submitter: University of Waterloo


gtdb_representative: t

ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Rothia sp. LK2588

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. LK2588


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_country: China: Hale; Huhhot

ncbi_isolation_source: soil surface

ncbi_organism_name: Larkinella sp. C7

ncbi_submitter: Inner Mongolia agricultural university, college of life science


ncbi_country: Germany: Koln

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli O111:NM str. K6890

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. K6890


ncbi_assembly_name: freshwater MAG --- Loc080925-5-5m_bin-1018

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T86792

ncbi_submitter: Broad Institute


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: BGI


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_organism_name: Catenibacterium mitsuokai


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Milan


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Rumen uncultured genome RUG10467

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368


ncbi_assembly_level: Complete Genome

ncbi_submitter: New England Biolabs


ncbi_organism_name: Brevundimonas diminuta

ncbi_strain_identifiers: SCAU 5

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Ahrensia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces galilaeus

ncbi_submitter: The University of Sydney


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus cereus group sp. BCN33

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN33


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Marinobacter nauticus


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Patescibacteria group bacterium UBA1396

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA1396


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Finland

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: USA: Ohio

ncbi_isolation_source: Incision swab after implant exposure post tarsal arthrodesis

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jeonbuk National University


ncbi_country: USA: International Space Station

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolate: Pectobacterium versatile LMG2412

ncbi_isolation_source: plant

ncbi_organism_name: Pectobacterium versatile

ncbi_strain_identifiers: Pectobacterium versatile LMG2412

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Povalibacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: gut

ncbi_organism_name: Sutterella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2617270870 annotated assembly

ncbi_organism_name: Celeribacter neptunius

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Blautia producta

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_country: Spain

ncbi_isolation_source: biofilm

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Instituto de la Grasa-CSIC


ncbi_country: United Kingdom:Midlands

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 61


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USSR

ncbi_isolation_source: soil

ncbi_strain_identifiers: BGSC 4AX1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar novosibirsk


ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Acidiphilium rubrum

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Clostridium thermobutyricum

ncbi_submitter: University of Bremen


ncbi_country: South Korea:Changwon

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_assembly_level: Chromosome

ncbi_country: USA: Seattle; Washington

ncbi_isolation_source: Vaginal

ncbi_organism_name: Treponema pallidum

ncbi_submitter: University of Washington


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_assembly_name: Rumen uncultured genome RUG12631

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG13854


ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: uncultured Salinibacterium sp.

ncbi_submitter: EMG


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Methylocystaceae bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. C2610

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: cold seep

ncbi_organism_name: Propionivibrio sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_assembly_name: Rumen uncultured genome RUG11204


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Moredun Research Institute


ncbi_organism_name: Amylibacter sp.


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Malaysia

ncbi_organism_name: Paraburkholderia fungorum

ncbi_submitter: University of Malaya


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the seqafrica consortium


ncbi_country: Germany

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodopirellula europaea SH398

ncbi_submitter: Microbial Interactions in MArine Systems (MIMAS)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Microbacterium proteolyticum

ncbi_strain_identifiers: CECT 8356

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Blautia sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes


ncbi_country: Mexico: Valparaiso

ncbi_isolation_source: Biological sample of a male horse

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxic seawater

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG4

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Propionivibrio sp.

ncbi_strain_identifiers: labscale reactor_MAG4

ncbi_submitter: TU Delft


ncbi_country: India: Chotapapayipalem; Guntur; Andhra Pradesh

ncbi_isolation_source: root

ncbi_organism_name: Rhizobium wenxiniae

ncbi_submitter: IUNFC


ncbi_submitter: Kyushu University Graduate school of medical sciences, department of Bacteriology


ncbi_isolation_source: marine sponge

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: ETH Zurich


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_isolation_source: water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Enterococcus durans ATCC 6056

ncbi_strain_identifiers: ATCC 6056

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus durans;x__Enterococcus durans ATCC 6056


ncbi_organism_name: Vibrio splendidus 12B01

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Segatella copri

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W33578


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus W19270


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Terriglobia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin5

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: HIE bin5

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Escherichia coli

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: University of Abuja


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Children's Hospital Affiliated to Zhengzhou University


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:170

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:170


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Ministry for Primary Industries


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Groningen


ncbi_country: Italy

ncbi_organism_name: Bifidobacterium parmae

ncbi_submitter: University of Parma


ncbi_organism_name: Mammaliicoccus sciuri


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alcanivorax sp. UBA1092

ncbi_submitter: University of Queensland


ncbi_country: China: Henan

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Arkansas; Arkadelphia

ncbi_isolation_source: soil adjacent to man-made pond at water treatment facility

ncbi_organism_name: Pseudomonas entomophila

ncbi_strain_identifiers: Small

ncbi_submitter: Ouachita Baptist University


ncbi_country: Belgium

ncbi_isolation_source: lambic beer

ncbi_organism_name: Acetobacter lambici

ncbi_submitter: university of Ghent


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: huazhong agriculatural university


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_assembly_name: freshwater MAG --- Loc081215-4m_bin-0399

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: pharmaceutical production line

ncbi_organism_name: Cytobacillus gottheilii

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Segatella hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Turkey: Kayseri

ncbi_isolation_source: Fish Farm

ncbi_organism_name: Flavobacterium kayseriense

ncbi_submitter: Erciyes University


ncbi_organism_name: Lachnospiraceae bacterium MD308

ncbi_submitter: INRA Jouy-en-Josas


ncbi_assembly_name: freshwater MAG --- A4_bin-164

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_isolation_source: dental plaque

ncbi_organism_name: Treponema parvum

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: NanJing University


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Candidatus Paceibacter sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;f__Candidatus Paceibacteraceae;g__Candidatus Paceibacter;x__unclassified Candidatus Paceibacter;s__Candidatus Paceibacter sp.


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Institute for Agricultural and Fisheries and Food Research (ILVO)


ncbi_isolation_source: human gut

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: EMG


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Philonthus cognatus


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium botulinum Af84

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: artisanal wheat sourdough

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus;s__Levilactobacillus acidifarinae;x__Levilactobacillus acidifarinae DSM 19394 = JCM 15949


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: hydrothermal vent fluid

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Utah


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Pseudoxanthobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Schleiferiaceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Minnesota


ncbi_organism_name: Candidatus Onthovivens sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Onthovivens;x__unclassified Candidatus Onthovivens;s__Candidatus Onthovivens sp.


ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-363-M17

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Allisonella histaminiformans

ncbi_submitter: University of Trento


ncbi_country: India: Dharwad; Karnataka

ncbi_isolation_source: Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Linnaeus University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: EMG


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Lund University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: China: Nanchang

ncbi_isolation_source: rectal swab from healthy participants

ncbi_submitter: beijing


ncbi_country: Arctic Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Paracoccus sp. Arc7-R13

ncbi_submitter: The First Institute of Oceanography, SOA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. Arc7-R13


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Ecuador: Atahualpa parish; Tungurahua province

ncbi_isolation_source: Water from irrigation channel

ncbi_submitter: Universidad Tecnica de Ambato


ncbi_country: China: Hangzhou

ncbi_isolation_source: bile

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hangzhou First People's Hospital


ncbi_country: China: Hengyang

ncbi_isolation_source: Liver puncture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_country: USA: TX

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Australia: The University of Queensland

ncbi_isolation_source: laboratory generated clone

ncbi_organism_name: Photobacterium damselae subsp. piscicida

ncbi_submitter: The University of Queensland


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5233

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5233


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-DS2

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_organism_name: Pseudomonas sp. VD-NE ins

ncbi_strain_identifiers: VD-NE ins

ncbi_submitter: University of Neuchatel


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Iran: Tehran

ncbi_isolation_source: wound

ncbi_submitter: Pasteur Institute of Iran


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Guizhou

ncbi_isolation_source: soil from karst cave

ncbi_organism_name: Pseudomonas cavernicola

ncbi_submitter: Chinese Academy of Sciences


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.557 MAG

ncbi_isolate: bin.557 MAG

ncbi_isolation_source: North Atlantic

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_strain_identifiers: bin.557 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain

ncbi_isolation_source: wastewater

ncbi_organism_name: Arcobacter sp. FW59

ncbi_submitter: Universitat Rovira i Virgili


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a composite leachate cistern at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Australia: Adelaide

ncbi_isolation_source: Wound sample

ncbi_submitter: University of South Australia


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori HP250AFiii

ncbi_submitter: Washington University


ncbi_assembly_name: Rumen uncultured genome RUG13709

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Anhui University of Chinese Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Nocardia seriolae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Agathobaculum sp.


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Rhodomicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: A29 original

ncbi_submitter: Friendship Hospital, Capital Medical University


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured PS1 clade bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__environmental samples;s__uncultured PS1 clade bacterium


ncbi_organism_name: Blautia caecimuris

ncbi_submitter: University of Chicago


ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 13ft depth

ncbi_organism_name: Chloroflexi bacterium RBG_13_51_52

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium RBG_13_51_52


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Saprospirales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Saprospiria;o__Saprospirales;x__environmental samples;s__uncultured Saprospirales bacterium


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: United Kingdom

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: The University of Texas at Dallas


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Guangzhou University of Chinese Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: The East China Sea

ncbi_isolation_source: oxic surface sediment

ncbi_organism_name: Algicola sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Balneolaceae bacterium UBA2500

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__unclassified Balneolaceae;s__Balneolaceae bacterium UBA2500


ncbi_country: China: Lincang; Yunnan

ncbi_isolation_source: tobacco stem

ncbi_organism_name: Brucella sp. 21LCYQ03

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: poultry meat product

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: The Edison Family Center for Genome Sciences and Systems Biology


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Citricoccus zhacaiensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Broad Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__unclassified Lachnospiraceae;s__Lachnospiraceae bacterium oral taxon 500;x__Lachnospiraceae oral taxon 107 str. F0167


ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: urine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter gyllenbergii;x__Acinetobacter gyllenbergii CIP 110306 = MTCC 11365


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Rennes


ncbi_country: Greece

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: WA

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Washington


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H75143


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD16775


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa37

ncbi_submitter: King Abdullah University Science and Technology


ncbi_submitter: US Food and Drug Administration


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Bangladesh

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_organism_name: Proteus columbae

ncbi_submitter: Washington University


ncbi_country: China

ncbi_isolation_source: beef

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Russia


ncbi_submitter: Research Institute for Systems Biology and Medicine


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand

ncbi_isolation_source: cherry

ncbi_organism_name: Pseudomonas avellanae

ncbi_strain_identifiers: ICMP 3690

ncbi_submitter: New Zealand Institute for Plant & Food research


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Enterobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Garden Soil

ncbi_organism_name: Streptomyces telluris

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_country: Spain: Sevilla

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CHU A Coruna


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Peru: Maras

ncbi_isolation_source: solar saltern

ncbi_organism_name: Chromohalobacter israelensis

ncbi_submitter: Universidad Nacional de San Antonio Abad


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Slovenia

ncbi_isolation_source: Cooked beans

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DGA CBRN Defence Center


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Eremiobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;x__unclassified Candidatus Eremiobacteria;s__Candidatus Eremiobacteria bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Hong Kong


ncbi_country: Uganda: Bwera General Hospital

ncbi_isolation_source: urine

ncbi_submitter: Makerere University


ncbi_country: Malaysia: Johor

ncbi_isolation_source: oxidation pond

ncbi_organism_name: Citrobacter sp. A1

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Bacteroides eggerthii DSM 20697

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides eggerthii;x__Bacteroides eggerthii DSM 20697


ncbi_country: Japan: Aburatsubo Inlet; Kanagawa Prefecture

ncbi_isolation_source: Sea surface microlayer

ncbi_organism_name: Gaetbulibacter sp. 4G1

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Utah


ncbi_submitter: National Institute of Agricultural Science


ncbi_organism_name: Bermanella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: University of Alabama Birmingham


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Wound Thigh Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: 20 years wild ginseng rhizosphere soil

ncbi_organism_name: Variovorax fucosicus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Staphylococcus pasteuri SP1

ncbi_submitter: Kyung Hee University


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_country: India

ncbi_submitter: Indian Institute of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_country: China: Deep Bay

ncbi_isolation_source: surface sediment

ncbi_organism_name: Ruegeria pomeroyi

ncbi_submitter: Microbial Evolution and Ecology Laboratory,Shenzhen Research Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Carlos Chagas - Fiocruz Parana


ncbi_organism_name: Kosakonia cowanii

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UIUC


ncbi_submitter: University hospital Hamburg-Eppendorf


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Anaerorhabdus sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Biotechnology, BTU Cottbus-Senftenberg


ncbi_organism_name: Streptomyces sp. NPDC057376

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella sp. R59

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Enterobacter chuandaensis

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Salmonella sp. NW964

ncbi_submitter: Sichuan University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_isolate: metabat2_coassembly_bwa.225 MAG

ncbi_strain_identifiers: metabat2_coassembly_bwa.225 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_submitter: AAFC


ncbi_organism_name: Streptococcus suis JS14

ncbi_submitter: Huazhong Agricultural University, Wuhan, China


ncbi_country: Zambia: Lusaka

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of Maryland College Park


ncbi_country: USA: Moline; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Tuebingen

ncbi_isolation_source: Nasal cavity

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Eberhard Karls Universitaet Tuebingen


ncbi_organism_name: Streptomyces angustmyceticus

ncbi_strain_identifiers: NBRC 3934

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: IL

ncbi_isolation_source: dried cut carrot

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Lung of dog with distemper

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: ChunLab


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Stenotrophomonas sp. 1198

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Sichuan University


ncbi_country: Germany: Marburg

ncbi_submitter: Justus Liebig University Giessen


ncbi_submitter: Huzhou cdc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: Ohio; western Lake Erie

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Virginia

ncbi_isolation_source: human

ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Virginia


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Clostridium sp. 7_3_54FAA

ncbi_submitter: Broad Institute


ncbi_country: USA: El Malpais National Monument; Cave 12; Cibola County; New Mexico

ncbi_isolation_source: swab of fur and skin

ncbi_organism_name: Streptomyces corynorhini

ncbi_submitter: NCAUR-ARS-USDA


ncbi_country: Uzbekistan: near Khiva

ncbi_organism_name: Borrelia persica No12

ncbi_submitter: Umea university


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_country: Honduras: Cortes; San Pedro Sula

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: Australia: Melbourne

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: ECO 017

ncbi_submitter: Monash University


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Sphingobacterium sp.


ncbi_country: USA: Bethesda

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Streptococcus dentapri

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Mediterranea massiliensis

ncbi_submitter: EMG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Acetobacterium sp.

ncbi_submitter: Institute of Applied Ecology


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Colombia: Magdalena

ncbi_isolation_source: marine water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Acinetobacter baumannii 662545-1347

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Brachyspiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: Australia

ncbi_isolation_source: ear

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Melbourne


ncbi_organism_name: Phytobacter diazotrophicus

ncbi_submitter: Universiteit Antwerpen


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Cycloclasticus pugetii

ncbi_submitter: University of East Anglia


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Caecum


ncbi_organism_name: bacterium


ncbi_country: Spain

ncbi_isolation_source: Farm

ncbi_submitter: ITACYL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oxalobacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_submitter: BIOTEC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Komeiliibacteriota;s__Candidatus Komeilibacteria bacterium RIFCSPLOWO2_01_FULL_52_15


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Chlamydia gallinacea

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Thomasclavelia cocleata


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_country: Japan

ncbi_isolation_source: Bos taurus

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: India: Kashmir

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces himalayensis subsp. himalayensis

ncbi_submitter: University of Calcutta


ncbi_isolation_source: oilfield

ncbi_organism_name: Kosakonia oryzendophytica

ncbi_submitter: Nankai university


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: USA: Canoe Beach; Nahant; MA

ncbi_organism_name: Mariniflexile sp. AS56

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: France

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 22835

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas sp. SJZ078

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Planomicrobium okeanokoites


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: BGI


ncbi_organism_name: Streptomyces parvulus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Gemmatales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacillus paramycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sudan: Khartoum; Al-Braha Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus licheniformis


ncbi_organism_name: uncultured Lactobacillales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonadales bacterium


ncbi_organism_name: Flavobacterium artemisiae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_assembly_name: freshwater MAG --- Umea3_bin-2090

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: University of Waterloo


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Massachusetts

ncbi_isolation_source: tongue scraping

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: China: Tibetans

ncbi_isolation_source: feces from diarrhoeal outpatients

ncbi_organism_name: Escherichia coli

ncbi_submitter: beijing


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: University of Veterinary and Animal Sciences, Lahore


ncbi_country: Canada

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_country: Bulgaria

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus anthracis str. 3154

ncbi_submitter: Northern Arizona University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. 3154


ncbi_country: Egypt: Tanta

ncbi_organism_name: Escherichia coli K-12

ncbi_submitter: JCVI


ncbi_country: Canada: Guelph

ncbi_isolation_source: Dry seeds

ncbi_organism_name: Bacillus sp. EKM208B

ncbi_submitter: University of Guelph

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. EKM208B


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: well water

ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0772

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces sp. NRRL S-813

ncbi_strain_identifiers: NRRL S-813

ncbi_submitter: University of Illinois


ncbi_assembly_name: freshwater MAG --- Umea_bin-08539

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: BILS


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: USA: MD

ncbi_isolation_source: Pre-chill chicken carcass

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Candidatus Fimisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimisoma;x__unclassified Candidatus Fimisoma;s__Candidatus Fimisoma sp.


ncbi_country: Guatemala: Guatemala

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_isolate: NCPPB 1822

ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_strain_identifiers: NCPPB 1822

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Federal State Budgetary Scientific Institution "Institute of Experimental Medicine"


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_strain_identifiers: LMG 305

ncbi_submitter: Oregon State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: Loyalsock Creek

ncbi_organism_name: Bacillus sp. SJS

ncbi_strain_identifiers: SJS

ncbi_submitter: Center for Genomics and Bioinformatics at Indiana University Bloomington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SJS


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: College of William and Mary


ncbi_organism_name: Alteromonas sp. KUL17

ncbi_submitter: RIMG, Kochi University


ncbi_country: Chile

ncbi_isolation_source: Liver

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: ADL Diagnostic Chile Ltda


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_submitter: University of Guelph


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong (CityU)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Limosilactobacillus ingluviei

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_country: South Korea: Sunchang

ncbi_isolation_source: meju; fermented soybean paste

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Chonbuk National University


ncbi_organism_name: Xylocopilactobacillus apicola

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_isolation_source: water

ncbi_organism_name: Prochlorococcus marinus str. MU1403

ncbi_submitter: Xiamen University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Khyber Medical University, peshawar, KPK, Pakistan


ncbi_country: Denmark

ncbi_isolation_source: Feces

ncbi_organism_name: Bacteroidales bacterium GP2

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium GP2


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Bayreuth

ncbi_isolation_source: nephridia

ncbi_organism_name: Verminephrobacter aporrectodeae subsp. tuberculatae

ncbi_submitter: Aarhus University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Sanya; Hainan Province

ncbi_isolation_source: Root knot nematode (Meloidogyne)

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Vibrio sp. 2304

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_country: Finland

ncbi_isolation_source: Blood

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: stool from preterm neonate

ncbi_submitter: University of Malaya


ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sediminibacterium ginsengisoli

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1399


ncbi_country: Switzerland

ncbi_isolation_source: Central venous catheter

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_country: Ireland

ncbi_isolation_source: Poultry/Soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University & Research


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus devriesei

ncbi_submitter: ANIWHA


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_country: USA: Vidalia Region; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolate: AOP43_F2_surf _bin _7

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP43_F2_surf _bin _7

ncbi_submitter: Genoscope


ncbi_country: USA: Massachusetts;Boston;The Forsyth Institute

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Nanosynbacter sp. TM7-076

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;x__unclassified Candidatus Nanosynbacter;s__Candidatus Nanosynbacter sp. TM7-076


ncbi_country: South Korea: Anseong-si

ncbi_isolation_source: soil

ncbi_organism_name: Sphingomonas chungangi

ncbi_submitter: Chung-Ang University


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: 4 rectangular cells and fluid captured using a micromanipulator; swab from the dolphin mouth; specifically the roof of the mouth; the tongue; and between the tongue and mandible

ncbi_organism_name: Tenacibaculum sp.


ncbi_isolation_source: hypersaline soil

ncbi_organism_name: Salinicoccus hispanicus

ncbi_submitter: University of Delhi


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: EMG


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Microbacteriaceae bacterium UBA1607

ncbi_submitter: University of Queensland


ncbi_organism_name: Actinotalea fermentans

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: lake water

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: Netherlands

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus

ncbi_submitter: TIFN


ncbi_country: Canada: Alberta

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Sao Paulo


ncbi_country: Viet Nam: Soc Trang

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Science, Viet Nam National University Ho Chi Minh City


ncbi_country: USA: Texas

ncbi_organism_name: Allomuricauda sp. ARW1Y1

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: medium

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Tianjin University


ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Polymorphobacter sp.

ncbi_submitter: Iowa State University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_submitter: University of Abuja


ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Negativibacillus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__unclassified Negativibacillus;s__Negativibacillus sp.


ncbi_organism_name: Rahnella inusitata

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Treponema sp.

ncbi_submitter: UIUC


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Monash University


ncbi_assembly_name: freshwater MAG --- Ja1-D2_bin-0036

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_organism_name: Salmonella sp. SKLX083065

ncbi_submitter: Zhejiang university


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolate: SPRUCE 626

ncbi_organism_name: FCB group bacterium

ncbi_strain_identifiers: SPRUCE 626

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__unclassified FCB group;s__FCB group bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13361

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_organism_name: Streptomyces sp. NPDC002685


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Metabacillus fastidiosus NBRC 101226

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: Oregon

ncbi_isolation_source: cane gall

ncbi_organism_name: Rhizobium sp. VS19-DR181

ncbi_submitter: Oregon State University


ncbi_country: USA: Delaware; Cape May-Lewes Ferry Terminal

ncbi_isolation_source: Seawater from the Delaware coast

ncbi_organism_name: Pseudoalteromonas piscicida

ncbi_submitter: USDA-Agricultural Research Service-Eastern Regional Research Center


ncbi_country: Denmark

ncbi_isolation_source: boiled hay; 1940s

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Microbacterium pygmaeum

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: France: Limoges

ncbi_isolation_source: Toilette

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universite Paris Sud


ncbi_country: Canada: Quebec

ncbi_isolation_source: combination of 24 samples (8 from lake Croche; 8 from Montjoie and 8 from Simoncouche) collected from 2013 through 2014

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Joint Genome Institute


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Thailand

ncbi_isolation_source: plant

ncbi_organism_name: Streptomyces naphthomycinicus

ncbi_submitter: Mahasarakham University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: USA

ncbi_organism_name: Dickeya chrysanthemi

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Mississippi State University


ncbi_country: Finland

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_assembly_name: Campylobacter jejuni CVM 41934 v1.0

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter jejuni CVM 41934

ncbi_submitter: FDA/CVM


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Pseudacidovorax sp.

ncbi_submitter: UNESP-FCAV


ncbi_organism_name: Lancefieldella rimae

ncbi_submitter: EMG


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China: Henan

ncbi_organism_name: Escherichia sp. XD97

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Nanjing

ncbi_isolation_source: soil

ncbi_organism_name: Hansschlegelia zhihuaiae

ncbi_submitter: nanjing agricultural university


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sudan

ncbi_isolation_source: vegetable

ncbi_submitter: King Abdulaziz University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_assembly_name: Tenacibaculum platacis strain 190611E02c

ncbi_organism_name: Tenacibaculum platacis

ncbi_submitter: INRA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Qinghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__aphid secondary symbionts;g__Candidatus Regiella;x__unclassified Candidatus Regiella;s__Candidatus Regiella endosymbiont of Tuberolachnus salignus


ncbi_isolation_source: the shrimp farm in eastern Thailand

ncbi_submitter: BIOTEC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: chicken

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Acinetobacter bouvetii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Salmonella enterica


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: China University of Geosciences


ncbi_country: Sweden

ncbi_isolation_source: PUS

ncbi_organism_name: Mycobacterium tuberculosis BTB09-001

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus sp. S125_ASV_20

ncbi_submitter: Washington University in St. Louis


ncbi_country: Spain

ncbi_isolation_source: Medical

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Investigacion Sanitaria y Biomedica de Alicante


ncbi_country: South Korea: Namjeju

ncbi_isolation_source: Potato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: National Institute of Agricultural Sciences, RDA


ncbi_country: India: Punjab; Ludhiana; Khandoor

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Capsulimonadaceae bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Shenzhen

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: BGI


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Faecalibaculum rodentium


ncbi_isolation_source: Burn

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: South Korea: Boryeong

ncbi_isolation_source: Mud

ncbi_organism_name: Adhaeribacter swui

ncbi_submitter: Kyungpook National University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_organism_name: Bosea sp. CCNWYY174

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. CCNWYY174