ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_submitter: Centre for Microbiome Research


gtdb_representative: f

ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_level: Contig

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Stanford University


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea

ncbi_isolation_source: Woopo wetland

ncbi_organism_name: Flavobacterium sp. N2550

ncbi_submitter: Jeju National University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacterium hibernum

ncbi_type_material_designation: assembly from type material


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020052218

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: China: Henan

ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_organism_name: Salmonella enterica

ncbi_submitter: wenzhou Medical university


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: China: Changzhou;Jiangsu

ncbi_isolation_source: Aerobic activated sludge

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: South China University of Technology


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: China: Shenzhen

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: China: Hainan

ncbi_isolation_source: Blood;Aneurysm tissue

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: BGI


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_assembly_level: Chromosome

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Cadiz


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Italy

ncbi_isolation_source: smoked salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechocystis sp. FACHB-898

ncbi_submitter: South China Normal University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus VRS5


ncbi_organism_name: Clostridioides difficile T22

ncbi_submitter: LPBA


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Germany

ncbi_isolation_source: turkey

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Lake Washington

ncbi_organism_name: Janthinobacterium sp. 67

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: human skin

ncbi_organism_name: Corynebacterium afermentans

ncbi_submitter: NIH/NHGRI


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: bacterium UBA2219

ncbi_submitter: University of Queensland


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Institute of Microbiology, Belarus National Academy of Sciences


ncbi_country: Zaire

ncbi_isolation_source: Belgium Congo

ncbi_organism_name: Leptospira santarosai

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Australia: Magnetic Island; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp.


ncbi_country: China:Guangdong; Shenzhem

ncbi_isolation_source: trachea

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Antarctica

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudoalteromonas sp. SWYJZ19

ncbi_submitter: Shandong University


ncbi_isolation_source: Cat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 11570


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Desulfohalobiaceae bacterium


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Israel: Negev Desert

ncbi_isolate: NEG bin26

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: NEG bin26

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Fibrobacterota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__environmental samples;s__uncultured Fibrobacterota bacterium


ncbi_organism_name: Micromonospora zamorensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Morganella morganii

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Centre International de Recherche en Infectiologie


ncbi_organism_name: Escherichia albertii

ncbi_submitter: CDC


ncbi_organism_name: uncultured Rhizobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Gaiellaceae bacterium


ncbi_organism_name: Gardnerella piotii

ncbi_submitter: MIT


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_organism_name: Roseovarius indicus

ncbi_submitter: Tang lab


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Shell Egg

ncbi_submitter: Pennsylvania State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Chlamydia pecorum

ncbi_submitter: University of Zurich


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin - Madison


ncbi_refseq_category: reference genome

ncbi_submitter: Georg August University Goettingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Shimwellia;s__Shimwellia blattae;x__Shimwellia blattae DSM 4481 = NBRC 105725


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE2

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Seawater (1m depth)

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_country: China: Xiamen

ncbi_isolation_source: Synechococcus culture from coastal marine water

ncbi_organism_name: Roseivirga sp. XM-24bin3

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Dialister sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany

ncbi_isolation_source: pilsner beer

ncbi_organism_name: Pediococcus damnosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Bangladesh

ncbi_isolation_source: stool of a child hospitalized at icddr;b hospital in Dhaka

ncbi_organism_name: Streptococcus infantarius

ncbi_submitter: Nestle Research Center and Nestle Institute of Health Sciences


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Chicago


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Malan

ncbi_organism_name: Rufibacter sp. LB8

ncbi_submitter: BGI-Qingdao


ncbi_strain_identifiers: Chicago

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;f__Treponemataceae;g__Treponema;s__Treponema pallidum;sb__Treponema pallidum subsp. pallidum;x__Treponema pallidum subsp. pallidum str. Chicago


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Princeton University


ncbi_assembly_name: Rumen uncultured genome RUG13650

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Finland

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Streptomyces sp. SPMA113

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Marinobacterium sp. xm-v-233

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Campylobacter sp. UBA1713

ncbi_submitter: University of Queensland


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Olin College


ncbi_assembly_name: Rumen uncultured genome RUG14071

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Poland: Lodz

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_country: China: Shenzhen

ncbi_organism_name: Lachnospiraceae bacterium AM48-27BH

ncbi_submitter: BGI


ncbi_assembly_name: Rumen uncultured genome RUG10805

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rat gut

ncbi_organism_name: Peptococcaceae bacterium UBA7185


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Stanford Healthcare


ncbi_organism_name: Enterococcus entomosocium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: High Point University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: Sudan

ncbi_genome_representation: partial

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Khartoum


ncbi_isolation_source: skin salmon

ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Vibrio parahaemolyticus TUMSAT_H03_S5

ncbi_submitter: Tokyo University of Marine Science and Technology


ncbi_submitter: EMG


ncbi_organism_name: Ellagibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: RIVM


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: United Kingdom: Sheffield

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Nonomuraea spiralis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Streptomyces osmaniensis


ncbi_country: China

ncbi_isolation_source: Hainan; China

ncbi_organism_name: Leptospira weilii

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_isolation_source: CSF

ncbi_organism_name: Vibrio cincinnatiensis

ncbi_submitter: CDC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Halomonas sp. AOP42-C2-23

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC048197

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-3837

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_assembly_name: freshwater MAG --- YR1_bin-0486

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Gemmiger formicilis


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: bacterium

ncbi_submitter: University of New South Wales


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Netherlands

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_country: Belgium

ncbi_isolation_source: broiler feces from chicken farm collected between 1998-2001

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni LMG 23216


ncbi_country: USA

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Slaughterhouse

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Bangladesh

ncbi_isolation_source: water

ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: University of Alberta


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: environment


gtdb_type_species_of_genus: t

ncbi_isolation_source: human sputum

ncbi_organism_name: Tatumella ptyseos ATCC 33301

ncbi_submitter: UW-GEL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_submitter: Stanford Healthcare


ncbi_organism_name: Streptomyces viridosporus ATCC 14672

ncbi_submitter: Broad Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: mouse gut metagenome


ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Staphylococcaceae bacterium UBA3154

ncbi_submitter: University of Queensland


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: VA

ncbi_isolation_source: blood

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia hominis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Peru

ncbi_isolation_source: oil contaminated environment

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: NCIMB 8170

ncbi_submitter: Agroscope


ncbi_organism_name: Klebsiella sp. M5al

ncbi_submitter: Zhejiang University


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Methylobacteriaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Finland

ncbi_isolation_source: water sample

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: University of Jyvaskyla


ncbi_country: India

ncbi_organism_name: Mycobacterium sp. GA-0227b

ncbi_submitter: JCVI


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Pararhodobacter sp.

ncbi_submitter: University of Calgary


ncbi_country: Spain

ncbi_isolation_source: laboratory

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Chr. Hansen


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Colombia: Valle del Cauca

ncbi_organism_name: Klebsiella sp. A-Nf5


ncbi_organism_name: Rhodoligotrophos ferricapiens

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Buenos Aires


ncbi_country: Australia: Sydney

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: Lawrence Berkeley National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis;x__Bacillus subtilis subsp. subtilis str. 168


ncbi_organism_name: Veillonella atypica

ncbi_submitter: EMG


ncbi_organism_name: Corynebacterium sp. H130

ncbi_submitter: China CDC


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: unverisity medical center groningen


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly


ncbi_organism_name: Vogesella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: mucosa of vagina [UBERON:0004983]

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: TNO


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Dechloromonas sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Micavibrio sp. UBA851

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Solobacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Mageeibacillus indolicus

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Phocaeicola plebeius


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11806

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG13091


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: USA

ncbi_isolation_source: respiratory

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China

ncbi_organism_name: Kitasatospora gansuensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces sp. NPDC053493

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Brevundimonas sp. 2P06AA

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wyoming


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Streptomyces niveus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Candidatus Scybalocola faecigallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Newcastle

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Queensland


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC086776


ncbi_country: Austria

ncbi_isolation_source: clinical

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Marinobacter sp. UBA6604


ncbi_organism_name: Nitriliruptorales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Heilongjiang

ncbi_isolation_source: gut

ncbi_strain_identifiers: CCPM 6219

ncbi_submitter: Harbin Medical University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Eggerthella sp. BIOML-A3

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: SC


ncbi_country: China: Changsha

ncbi_isolation_source: liver abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing genomics institute


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Shenzhen

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Guangdong

ncbi_isolation_source: air medium

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Russia: Novosibirsk

ncbi_isolation_source: throat; endotracheal tube

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Institute of Chemical Biology and Fundamental Medicine (ICBFM SB RAS)


ncbi_assembly_name: IMG-taxon 2681813510 annotated assembly

ncbi_organism_name: Zobellia uliginosa

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Blood

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_country: Atlantic Ocean: North Atlantic

ncbi_isolation_source: Seaweed

ncbi_organism_name: Pseudoalteromonas sp. S4491

ncbi_submitter: Technical University of Denmark


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Thiocyanate bioreactor

ncbi_organism_name: Thiobacillus sp. SCN 65-179

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Germany

ncbi_submitter: University of Zurich


ncbi_country: USA: AL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: Bifidobacterium sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: USA:Durham; North Carolina

ncbi_organism_name: Candidatus Akkermansia timonensis


ncbi_country: Japan:Tochigi; Nikkoh; Lake Yunoko

ncbi_isolate: ETSB Lake Yunoko

ncbi_strain_identifiers: ETSB Lake Yunoko

ncbi_submitter: Department of Biochemistry & Molecular Biology, Dalhousie University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__cyanobacterium endosymbiont of Epithemia turgida;x__cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake Yunoko


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: India: Punjab

ncbi_isolation_source: Rice seed

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Allisonella histaminiformans

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Malaysia

ncbi_isolation_source: Endotracheal tube

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Klebsiella sp. JB_Kp029

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Paenibacillus castaneae

ncbi_strain_identifiers: CECT 7279

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Tunisia: Nabeul

ncbi_isolation_source: Plant

ncbi_organism_name: Bacillus sp. DHT2

ncbi_submitter: CBBC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. DHT2


ncbi_organism_name: Enterococcus hirae


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flammeovirgaceae bacterium UBA1990

ncbi_submitter: University of Queensland


ncbi_organism_name: Halomonas sp. 707B3

ncbi_submitter: University of Florida


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Ardenticatenaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EBI


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eisenbergiella sp.


ncbi_country: China: Hebei

ncbi_isolation_source: water

ncbi_organism_name: Sphingomonas baiyangensis

ncbi_submitter: institute of microbiology,chinese academy of sciences


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_country: Ecuador

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Dorea amylophila

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Duncaniella muris


ncbi_country: USA: California

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium elkanii USDA 76

ncbi_strain_identifiers: USDA 76

ncbi_submitter: VEIL Bradyrhizobium group


ncbi_isolation_source: lake water

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: University of Zurich


ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: intestinal content

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: ChinaCDC


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW460-7

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Loclat_bin-00969

ncbi_submitter: BILS


ncbi_country: USA: Goucher College; Baltimore; Maryland

ncbi_isolation_source: skin mucus

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Goucher College


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: homogenate

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China

ncbi_organism_name: Dyadobacter alkalitolerans DSM 23607

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Spirosomataceae;g__Dyadobacter;s__Dyadobacter alkalitolerans;x__Dyadobacter alkalitolerans DSM 23607


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Imbroritus primus

ncbi_strain_identifiers: PBA


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Japan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Emek Medical center


ncbi_country: Austria

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_country: Canada: Alberta

ncbi_submitter: University of Calgary


ncbi_country: Australia: Brisbane

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Mycobacteroides immunogenum

ncbi_submitter: US EPA


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Huashan Hospital


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: China CDC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: PA

ncbi_isolation_source: infant

ncbi_organism_name: Escherichia coli DEC1A

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: unknown


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: Algal phycosphere

ncbi_organism_name: Bosea sp. RAC05

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. RAC05


ncbi_organism_name: Eubacterium sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_organism_name: Limnospira maxima

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of British Columbia


ncbi_organism_name: Williamsia deligens

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Hydrogenophaga sp. RWCD_12

ncbi_submitter: Hannam University


ncbi_organism_name: Microlunatus sp. Y1700

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Arthrobacter citreus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: Canada: Guelph

ncbi_isolation_source: Dry seeds

ncbi_organism_name: Paenibacillus sp. EKM212P

ncbi_submitter: University of Guelph


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0082

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Rhodanobacter sp. Root627

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Affiliated Shenzhen Nanshan Hospital of Guangdong Medical College, Shenzhen, China;


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Wadsworth Center, New York State Department of Health


ncbi_country: France

ncbi_organism_name: Campylobacter sp. CNRCH_2015_0814

ncbi_submitter: IFREMER


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Citromicrobium sp. UBA1476

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: MS

ncbi_isolation_source: Peritoneal fluid

ncbi_organism_name: Staphylococcus aureus DAR3616


ncbi_country: USA: WA

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: University of Washington


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W79968


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Shanghai; Nanjing

ncbi_isolation_source: greenhouse soil

ncbi_organism_name: Rhizobium sp. LMB-1

ncbi_submitter: East China University of Science and Technology


ncbi_organism_name: Ponticoccus sp. SC2-64

ncbi_submitter: Shantou University


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: South Korea: Seosan

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: POSTECH


ncbi_country: Australia: Adelaide

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: The Australian Wine Research Institute


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_submitter: University of Waterloo


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_country: France: Paris

ncbi_isolation_source: catheter

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: aphp


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (64 uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Pakistan

ncbi_isolation_source: feces


ncbi_submitter: Kenya Medical Research Institute


ncbi_country: Kenya

ncbi_isolation_source: camelid milk; fermented suusac

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ETH Zurich


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_isolation_source: throat swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: USA: NY

ncbi_isolation_source: orbital abscess post-eye removal

ncbi_organism_name: Actinomyces sp. AC-20-1

ncbi_submitter: Cornell University


ncbi_country: Germany

ncbi_isolation_source: Shrimps

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: JLU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Beijing; Space Centre

ncbi_isolation_source: Chinese spacecraft Shenzhou X

ncbi_organism_name: Acinetobacter sp. LCT-H3

ncbi_submitter: Chinese PLA General Hospital, Chinese PLA Postgraduate Medical School


ncbi_organism_name: Vibrio cholerae B33

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor;x__Vibrio cholerae B33


ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Achromobacter denitrificans

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: Caecum


ncbi_country: United Kingdom

ncbi_isolation_source: sewage

ncbi_submitter: SC


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Northeastern University


ncbi_country: Nepal: Jomson

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Uganda: Bwera General Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Wheatland; New York

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_strain_identifiers: RIT-PI-U

ncbi_submitter: Rochester Institute of Technology


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Kansas Medical Center


ncbi_country: USA: Red Lake Falls; MN

ncbi_organism_name: Xanthomonas prunicola

ncbi_submitter: Facultad de Quimica, Universidad de la Republica


ncbi_organism_name: Clostridioides mangenotii LM2

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Bacillota bacterium LCP21S3_A4

ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Bacillota bacterium LCP21S3_A4


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: uncultured Prolixibacteraceae bacterium


ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: uncultured Acidibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Acidibacter;x__environmental samples;s__uncultured Acidibacter sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyorin University Faculty of Medicine


ncbi_country: China

ncbi_isolation_source: Saline and alkaline soil

ncbi_organism_name: Halomonas heilongjiangensis

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Thermoanaerobacterium butyriciformans

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG14354

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Butyricicoccus sp.


ncbi_organism_name: Rhizobium mulingense

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bilophila sp.


ncbi_organism_name: Candidatus Aminicenantia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;x__unclassified Candidatus Aminicenantia;s__Candidatus Aminicenantia bacterium


ncbi_country: Spain

ncbi_isolation_source: fish larvae aquaculture

ncbi_organism_name: Phaeobacter piscinae

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Pelobium sp.


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: human stool

ncbi_submitter: Osaka University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Gluconobacter frateurii NRIC 0228

ncbi_strain_identifiers: NRIC 0228

ncbi_submitter: Tokyo University of Agriculture


ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: Rutgers University


ncbi_country: USA: Bronx; NY

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F26873

ncbi_submitter: Broad Institute


ncbi_country: USA: Peoria; IL

ncbi_isolation_source: Ground beef

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Tufts University


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: Sinus

ncbi_organism_name: Pasteurella multocida subsp. septica

ncbi_submitter: INRA


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Fourth Hospital of Hebei Medical University


ncbi_country: Netherlands

ncbi_isolation_source: rectal swab

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Frateuria sp.

ncbi_submitter: Zhejiang University


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG14557

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: water from hydrothermal vent

ncbi_organism_name: Thermosipho melanesiensis

ncbi_submitter: University of Oslo


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B299;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Peru

ncbi_isolation_source: oil contaminated environment

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_country: Poland: Grudziadz

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: wildlife

ncbi_submitter: Universidad Andres Bello


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: wastewater

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Instituto de Biologia Experimental e Tecnologica


ncbi_organism_name: Caldimonas sp.


ncbi_organism_name: Enterobacter sp. BIDMC109

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. BIDMC109


ncbi_organism_name: Campylobacter lanienae


ncbi_organism_name: Streptomyces subrutilus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: NY

ncbi_isolation_source: environment soil

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Idaho

ncbi_isolation_source: biofilm from indoor freshwater fish hatchery

ncbi_organism_name: Pseudomonas sp. TNT2022 ID1044

ncbi_submitter: University of Connecticut Graf Lab


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Australia: Five Islands Nature Reserve; NSW

ncbi_isolation_source: cloacal sample

ncbi_submitter: OUTBREAK


ncbi_organism_name: Falsibacillus pallidus

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Pseudomonas shirazensis

ncbi_strain_identifiers: JDB

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: One-day-old chicks

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. WA_14900


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: Rumen uncultured genome RUG310

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA: South Carolina

ncbi_isolation_source: pharyngeal mucosa

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: Spain

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolate: FJZZW

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Japan: Niigata

ncbi_isolation_source: Blood from clinical patient

ncbi_submitter: Department of Infectious Diseases, Keio University School of Medicine


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Streptomyces sp. NPDC046832

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Florida

ncbi_isolation_source: river water; unialgal nonaxenic culture

ncbi_organism_name: Cyanobium sp. FGCU52

ncbi_submitter: Nova Southeastern University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_country: France

ncbi_isolation_source: teat canal

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Geneva University Hospitals


ncbi_country: Japan: Tsukuba

ncbi_isolation_source: gut tissue

ncbi_organism_name: Gilliamella sp. ESL0441

ncbi_submitter: University of Lausanne


ncbi_organism_name: Microbacterium sp. 2MCAF23

ncbi_submitter: CCRP


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Neomicrothrix sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp.


ncbi_organism_name: Fibrobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Streptomyces anulatus


ncbi_organism_name: Lacibacter sp.


ncbi_organism_name: Klebsiella pneumoniae


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Gemmiger formicilis


ncbi_submitter: Institut Pasteur


ncbi_organism_name: Kitasatospora sp. NPDC048239


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Phycisphaerales bacterium UBA2218

ncbi_submitter: University of Queensland


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces clavuligerus

ncbi_strain_identifiers: DSM 738

ncbi_submitter: University of Strathclyde


ncbi_isolation_source: Dual-strain biofilm on Detroit 562 cells

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Emory University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: INRA


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Moraxella sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Hylemonella sp.

ncbi_submitter: Stockholm University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: rat gut

ncbi_organism_name: Ruminococcus sp. UBA3270


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: KCKM 0992

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Streptomyces nitrosporeus

ncbi_submitter: KAIST


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Sulfopaludibacter sp. SbA3

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Sulfopaludibacter;x__unclassified Candidatus Sulfopaludibacter;s__Candidatus Sulfopaludibacter sp. SbA3


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: USA: Colorado

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: Colorado State U


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: seaweed

ncbi_organism_name: Roseobacter litoralis Och 149

ncbi_strain_identifiers: Och 149

ncbi_submitter: Moore Foundation


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Anaeroglobus geminatus

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acidovorax sp. WCS2018Noco2-16

ncbi_submitter: Utrecht University


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: marine college, shandong university

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01521

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01521


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium


ncbi_country: Denmark

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus


ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Netherlands

ncbi_isolation_source: water

ncbi_submitter: Luxembourg Centre for Systems Biomedecine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;s__Candidatus Neomicrothrix parvicella;x__Candidatus Neomicrothrix parvicella Bio17-1


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: EBI


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Universiti Malaysia Kelantan


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium


ncbi_country: China

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_organism_name: Yersinia bercovieri

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: Greece: Epirus

ncbi_isolation_source: raw sheep milk

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pernambuco (UPE)


ncbi_assembly_name: Bacillus clausii TIL-21C Complete genome

ncbi_organism_name: Shouchella clausii

ncbi_submitter: JSS College of Pharmacy, Ooty


ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;x__unclassified Candidatus Dormibacteria;s__Candidatus Dormibacteria bacterium


ncbi_organism_name: Raoultella planticola

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Russia: Perm; Perm region

ncbi_isolation_source: Plantago rhizosphere; former landfill area

ncbi_organism_name: Rhodococcus ruber

ncbi_strain_identifiers: IEGM 1156

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_organism_name: Ktedonobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Mexico: Monterrey; Nuevo Leon

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: Japan

ncbi_isolation_source: pobuzihi (fermented cummingcordia)

ncbi_organism_name: Ligilactobacillus pobuzihii

ncbi_submitter: Shanghai Majorbio


ncbi_country: USA: Milwaukee

ncbi_isolation_source: stool

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: South Korea:Pyeongchang-gun

ncbi_isolation_source: breast

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Seoul National University


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: marine

ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Caulobacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae UHKPC31

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Neisseria sp. P0017.S008

ncbi_submitter: Rochester Institute of Technology


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Candidatus Peribacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Rahnella aquatilis

ncbi_submitter: USDA Stop the rot


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bifidobacterium asteroides

ncbi_submitter: EMG


ncbi_organism_name: Hafnia sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Halomonas sp. TG39a

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Enterococcus faecalis 06-MB-S-10

ncbi_submitter: The Genome Institute


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Kosakonia cowanii


ncbi_country: New Zealand: Wellington

ncbi_isolation_source: Diseased bee frame

ncbi_organism_name: Paenibacillus larvae subsp. larvae

ncbi_strain_identifiers: Pl-WAI

ncbi_submitter: University of Canterbury


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. AF32-12BH

ncbi_submitter: BGI


ncbi_country: USA: Bullock; Alabama

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1325

ncbi_submitter: Broad Institute


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Grass with Chicken Manure

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: GP T1 EMB CEF 4

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Halomonas sp. JCM 19032

ncbi_submitter: Microbe Division/JCM, RIKEN BioResource Center


ncbi_organism_name: Candidatus Kapaibacteriota bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;x__unclassified Candidatus Kapaibacteriota;s__Candidatus Kapaibacteriota bacterium


ncbi_organism_name: uncultured Flavonifractor sp.


ncbi_organism_name: uncultured Leptolyngbya sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Ruminococcus sp.


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine


ncbi_organism_name: Bariatricus sp. HCP28S3_D3

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: UIUC


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Micromonospora chokoriensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: University of East Anglia


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Anhui

ncbi_isolation_source: Diversion fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Thailand

ncbi_isolation_source: shrimp pond sediment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: National Cheng Kung University


ncbi_country: USA: St. Paul; Minnesota

ncbi_isolation_source: Plastic debris in land/lake environment

ncbi_organism_name: Variovorax sp. PDNC026

ncbi_submitter: University of Minnesota


ncbi_country: USA: Brevard; FL

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Northern Arizona University


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella falsenii;x__Prevotella falsenii DSM 22864 = JCM 15124


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: South Korea: Yellow sea

ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Lewinella sp. IMCC34183

ncbi_submitter: Inha University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA4967

ncbi_submitter: University of Queensland


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_country: South Korea: Sangju-si

ncbi_isolation_source: water

ncbi_organism_name: Macromonas nakdongensis

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coriobacteriaceae bacterium LG55-24

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sobrinus TCI-175

ncbi_submitter: JCVI


ncbi_country: China: South China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Prolixibacteraceae bacterium JC049

ncbi_submitter: Ocean University of China