ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Campylobacter hominis


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Japan

ncbi_genome_representation: full

ncbi_isolation_source: Stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_assembly_level: Complete Genome

ncbi_country: Malaysia: Selangor

ncbi_isolation_source: Oral cavity

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Universiti Putra Malaysia


ncbi_assembly_level: Contig

ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Hubei; Daye

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: DYrengong

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: USA:Alaska; North Slope; Kuparuk formation

ncbi_isolation_source: oil reservoir sample K2

ncbi_organism_name: Thermotoga petrophila

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: Gulf of Mexico

ncbi_isolation_source: Anaerobic ethane-degrading enrichment culture inoculated with marine sediment

ncbi_organism_name: Desulfobacteraceae bacterium Eth-SRB2

ncbi_submitter: Helmholtz Centre for Environmental Research GmbH - UFZ


ncbi_country: China: Shandong Province

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_strain_identifiers: MG1655 - CHLB

ncbi_submitter: Emory University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Bathyarchaeota archaeon

ncbi_submitter: Institute of Deep-sea Science and Engineering

ncbi_taxonomy_unfiltered: d__Archaea;x__Thermoproteati;p__Candidatus Bathyarchaeota;x__unclassified Candidatus Bathyarchaeota;s__Candidatus Bathyarchaeota archaeon


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: feces

ncbi_submitter: Uppsala University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Schaalia odontolytica

ncbi_submitter: University of Chicago


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Paenibacillus sp. FSL H7-0690

ncbi_submitter: Penn State


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 192 - depth 10m

ncbi_organism_name: Erythrobacter sp. REDSEA-S40_B1

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Alteromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: The Institute of Chemical Biology and Fundamental Medicine SB RAS


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Plesiomonas sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pigeon pea little leaf phytoplasma

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__unclassified Candidatus Phytoplasma;s__Pigeon pea little leaf phytoplasma


ncbi_organism_name: uncultured Fusicatenibacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: University of Queensland


ncbi_organism_name: Empedobacter sp.


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Streptococcus gallolyticus

ncbi_submitter: BGI


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sydney


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Ornithinibacillus sp. FSL M8-0202


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_isolation_source: citrus huanglongbing

ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_refseq_category: reference genome

ncbi_submitter: Crop Diseases, Pests, Genetics Research Unit San Joaquin Valley Agricultural Sciences Center, USDA

ncbi_type_material_designation: assembly designated as reftype


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Alteromonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Kosmotoga sp.

ncbi_submitter: The Ohio State University


ncbi_country: USA: Atlanta

ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae ATL_2011_01_05

ncbi_submitter: Read Laboratory, Emory University


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: SPRUCE 540

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: SPRUCE 540

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: University of Florida


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_strain_identifiers: TNOB 22

ncbi_submitter: Tamilnadu Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Salmonella sp. SAL4434

ncbi_submitter: Zhejiang university


ncbi_organism_name: Candidatus Limiplasma merdipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma merdipullorum


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Yangzhou University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: INRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_submitter: UMR 1137 IAME


ncbi_country: USA

ncbi_organism_name: Mycoplasmoides gallisepticum

ncbi_submitter: USDA-ARS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: California; Linvingston

ncbi_isolation_source: Sweet potato storage root

ncbi_organism_name: Streptomyces ipomoeae

ncbi_submitter: Louisiana State University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-359-O02

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium mantenii

ncbi_submitter: JCVI


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Treponema sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Slackia sp.

ncbi_submitter: The University of Queensland


ncbi_country: China: Yunnan Province

ncbi_isolation_source: river water

ncbi_organism_name: Vogesella indigofera

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: BGI-Shenzhen


ncbi_country: Canada

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr


ncbi_isolation_source: milk

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of queensland


ncbi_organism_name: Roseburia faecis


ncbi_isolation_source: human feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Hunan University of Science and Engineering


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-0734

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nocardioides sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Leucobacter sp. MMO-125

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: North Sea: Deep Ridge

ncbi_isolation_source: Filtered Water Sample

ncbi_organism_name: Pseudosulfitobacter sp. DSM 107133

ncbi_submitter: DSMZ


ncbi_organism_name: Caulobacter sp. BK020


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter coli

ncbi_submitter: SC


ncbi_country: South Korea: Suwon

ncbi_isolation_source: soil

ncbi_organism_name: Chitinophaga fulva

ncbi_submitter: Kyonggi University

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: University of Chicago


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Mycoplasmopsis synoviae


ncbi_organism_name: Xylella fastidiosa subsp. pauca

ncbi_submitter: USDA


ncbi_country: USA: Durham; NC

ncbi_isolation_source: tissue; R groin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Alabama in Huntsville


ncbi_organism_name: Balneola sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Mexico

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Ligilactobacillus sp. LYQ139

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Segatella copri

ncbi_submitter: EMG


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: Virgin Islands: St. Croix

ncbi_isolation_source: Tap water

ncbi_organism_name: Legionella santicrucis

ncbi_submitter: Tel Aviv University


ncbi_organism_name: Pseudomonas amygdali pv. sesami

ncbi_strain_identifiers: NCPPB 1016

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. sesami


ncbi_country: Canada: Frelighsburg; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: USA: New York

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: uncultured bacterium


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: China

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_country: USA

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Iowa State University


ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: University of California at Davis


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8943

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: New Hampshire; Framingham

ncbi_organism_name: Paenibacillus chitinolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Synergistales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Besancon

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: China Jiliang University


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Agathobacter sp.


ncbi_organism_name: Corynebacterium auriscanis

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: China: Hunan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Candidatus Faecivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Faecivicinus;x__unclassified Candidatus Faecivicinus;s__Candidatus Faecivicinus sp.


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Culicoidibacterales bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Odoribacter splanchnicus


ncbi_organism_name: Allisonella histaminiformans


ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Ralstonia syzygii subsp. celebesensis

ncbi_submitter: UGM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia syzygii;sb__Ralstonia syzygii subsp. celebesensis


ncbi_organism_name: Staphylococcus felis

ncbi_submitter: INSERM U1047


ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Kasetsart University


ncbi_organism_name: Shewanella marisflavi

ncbi_submitter: Yangzhou University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_assembly_name: freshwater MAG --- Erken-D7_bin-0583

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Oxford


ncbi_organism_name: Streptomyces ochraceiscleroticus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Israel

ncbi_isolation_source: animal

ncbi_submitter: Sheba medical center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Ottawa


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Wits University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Clostridiales bacterium


ncbi_country: USSR: Kerch

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Research Institute for Plague Control


ncbi_country: USA: Cynthiana; Kentucky

ncbi_isolation_source: equine placenta

ncbi_organism_name: Allokutzneria sp. NRRL B-24872

ncbi_submitter: USDA/ARS/NCAUR


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Tunku Abdul Rahman


ncbi_country: Hungary

ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_assembly_name: Rumen uncultured genome RUG13026

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gallionella sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Thauera phenolivorans

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Schinkia azotoformans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Jacksoniibacteriota;s__Candidatus Jacksonbacteria bacterium RIFOXYA2_FULL_43_12


ncbi_isolate: ECT-R 2

ncbi_isolation_source: human wound secretion

ncbi_strain_identifiers: ECT-R 2

ncbi_submitter: The Norwegian High-Throughput Sequencing Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus ECT-R 2


ncbi_organism_name: Streptomyces sp. NPDC005483

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: Brisbane

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Rhodocyclaceae bacterium


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1795


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Planctomicrobium piriforme

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_isolation_source: metagenome

ncbi_organism_name: Defluviitalea phaphyphila

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Caulobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Monash University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Cohaesibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Brazil

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: The Ohio State University


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: Culture Media

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Taiwan

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Shanghai Jiaotong University school of medicin


ncbi_assembly_level: Chromosome

ncbi_organism_name: Fusobacterium varium

ncbi_submitter: Forsyth Institute


ncbi_organism_name: uncultured Ruminococcus sp.


gtdb_type_species_of_genus: t

ncbi_country: Russia

ncbi_isolation_source: marine hot spring

ncbi_organism_name: Winmispira thermophila DSM 6578

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China:Hubei; Anlu

ncbi_isolation_source: trachea

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG13971

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Slovakia: Lehota pod Vtacnikom

ncbi_isolation_source: milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_country: Canada: Eel Lake; Yarmouth County; Nova Scotia

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_country: Taiwan: Taoyuan City

ncbi_isolation_source: patient with DFU

ncbi_organism_name: Streptococcus vulneris

ncbi_submitter: Ming Chuan University


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: Pericardial effusion

ncbi_submitter: South China University of Technology


ncbi_country: Netherlands

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: bacterium


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acidovorax sp. NPDC077693

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Miltoncostaeaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Fimbriimonas ginsengisoli Gsoil 348

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Roseobacteraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Tongji University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Robertmurraya beringensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Yangzhou University


ncbi_submitter: University of Parma


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_country: Greece

ncbi_isolation_source: Sea bass

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: WGS Escherichia coli EC7

ncbi_country: Lebanon: Byblos

ncbi_isolation_source: gastrointestinal

ncbi_organism_name: Escherichia coli LAU-EC7

ncbi_submitter: Lebanese American University


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Porticoccus sp.

ncbi_submitter: EMG


ncbi_country: Nigeria: Igboukwu

ncbi_isolation_source: sold in market

ncbi_organism_name: Citrobacter portucalensis

ncbi_strain_identifiers: Igbk 2

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: United Kingdom: London

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Aggregatibacter aphrophilus ATCC 33389

ncbi_strain_identifiers: NCTC 5906

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Campylobacter fetus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Guizhou province

ncbi_isolation_source: retropharyngeal swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_submitter: University of Verona, Italy


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Rhodovibrionaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_assembly_name: IMG-taxon 2599185297 annotated assembly

ncbi_organism_name: Flavobacterium swingsii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Caulobacter sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_assembly_name: IMG-taxon 2623620556 annotated assembly

ncbi_organism_name: Dyella jiangningensis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Austria

ncbi_isolation_source: nasal

ncbi_organism_name: Corynebacterium belfantii

ncbi_submitter: AGES


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_country: USA: San Francisco

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_organism_name: Comamonas terrigena


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: INRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Geobacter anodireducens

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: Minnesota

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus sp. UMNPBX18

ncbi_submitter: University of Minnesota


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: OM182 bacterium MED-G24

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;s__OM182 bacterium MED-G24


ncbi_country: Chile: Cerro Chajnantor

ncbi_isolation_source: Atacama Desert Soil

ncbi_organism_name: Micromonospora sicca

ncbi_submitter: Newcastle University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Italy

ncbi_isolation_source: fresh meat bovine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_assembly_name: freshwater MAG --- MJ2_bin-144

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 40 year old woman who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Cyanobacteria bacterium LVE1205-1

ncbi_submitter: Instituto de Quimica - USP

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium LVE1205-1


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: Rumen uncultured genome RUG12738

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: ANSES


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB13-127

ncbi_submitter: Broad Institute


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: BAL

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: University of Rwanda


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Norway

ncbi_isolation_source: milk from cow teat in a norwegian farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ANIHWA


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020046534


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: CDHLST

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite de Caen


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Protoclostridium gallicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Protoclostridium;s__Candidatus Protoclostridium gallicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Protoclostridium;s__Candidatus Protoclostridium gallicola


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: rat gut

ncbi_organism_name: Bacillales bacterium UBA7057

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- Loc090907-1m_bin-282

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Streptomyces sp. NPDC090075

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: South Korea: Daegu

ncbi_isolation_source: brain tissue

ncbi_organism_name: Carnobacterium viridans

ncbi_submitter: Kyungpook National University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Marinovum algicola

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_country: USA: Detroit Medical Center

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Actinomadura alba

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Russia: Samara

ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Cote d Ivoire: Abidjan

ncbi_isolation_source: University Hospital of Abidjan-Yopougon

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Pasteur Institut of Ivory Coast


ncbi_country: Australia: Sydney; NSW


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Gordonia polyisoprenivorans HW436

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: PA; Montoursville

ncbi_isolation_source: freshwater creek

ncbi_organism_name: Flavobacterium sp. NLM

ncbi_strain_identifiers: NLM

ncbi_submitter: GCAT-SEEK


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_organism_name: Nocardia asiatica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6528

ncbi_submitter: Ministry of Science and Technology of China


ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_organism_name: Acinetobacter sp. XH1639

ncbi_submitter: Zhejiang University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Italy

ncbi_submitter: Sapienza University of Rome


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Chryseobacterium sp. CCNWLW145

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Curtobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: pigeonpea root nodule (farming soil)

ncbi_organism_name: Bradyrhizobium ivorense

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Marinobacter nauticus


ncbi_isolation_source: rabbit gut

ncbi_organism_name: Bacteroides graminisolvens

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_country: USA

ncbi_organism_name: Escherichia coli O6:H16

ncbi_submitter: CDC


ncbi_organism_name: Candidatus Copromorpha sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;x__Eubacteriaceae incertae sedis;g__Candidatus Allocopromorpha;x__unclassified Candidatus Copromorpha;s__Candidatus Copromorpha sp.


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Colombia: Antioquia; Bello

ncbi_isolation_source: Peritoneal fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Antioquia


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI


ncbi_organism_name: Leptotrichia wadei

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York City

ncbi_isolation_source: New York City MTA subway

ncbi_organism_name: Pseudomonas nitroreducens

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Picosynechococcus sp. PCC 7002

ncbi_submitter: Penn State University


ncbi_country: Japan:Wakayama; Hashimoto

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Kyushu University


ncbi_country: USA: FL; Key West; inshore coral nursery

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pleionea sp. CnH1-48

ncbi_submitter: Meyer Microbes Lab


ncbi_country: China: Liaoning

ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_isolation_source: Human nasopharynx

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: UANTW


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_country: China: Innermogolia

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- Loclat_bin-08675

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_country: South Korea: Gwangyang Bay

ncbi_isolation_source: coastal sea water [ENVO:00002150]

ncbi_organism_name: Alteraurantiacibacter aestuarii

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Yangzhou

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: YangZhou university


ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: California National Primate Research Center

ncbi_isolation_source: monkey stomach

ncbi_organism_name: Helicobacter pylori


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_submitter: Faculty of Public Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: USA: California

ncbi_isolation_source: crown gall

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: USDA-ARS


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- Loc090907-6m_bin-267

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiaceae bacterium AM27-36LB

ncbi_submitter: BGI


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_organism_name: Rossellomorea sp. NPDC071047

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Kuenenia sp.

ncbi_submitter: EPFL

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__unclassified Candidatus Kuenenia;s__Candidatus Kuenenia sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Streptomyces sp. NPDC090082


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Saccharofermentanales bacterium

ncbi_submitter: University of British Columbia


ncbi_submitter: University of Calgary


ncbi_organism_name: Paenibacillus macerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Candidatus Nanopelagicus sp.

ncbi_submitter: University of Minnesota Duluth

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;x__unclassified Candidatus Nanopelagicus;s__Candidatus Nanopelagicus sp.


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: South Korea: Yeosu

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: University of Queensland


ncbi_country: India: New Delhi

ncbi_isolation_source: MAMC Hospital; New Delhi

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: CSIR-Institute of Genomics and Integrative Biology (IGIB)


ncbi_country: South Korea

ncbi_isolation_source: pus

ncbi_organism_name: Eikenella corrodens

ncbi_strain_identifiers: KCOM 1378

ncbi_submitter: Chosun University


ncbi_country: China: Beijing

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Lebanon

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American University


ncbi_assembly_name: freshwater MAG --- MJ_bin-0762

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Cellulomonas sp. KRMCY2

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: RIKEN-BRC


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Fervidicella metallireducens AeB

ncbi_strain_identifiers: AeB

ncbi_submitter: Microbial Gene Research & Resources Facility, Griffith University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Apibacter mensalis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: CA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_country: Italy

ncbi_isolation_source: bovine Stool

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Arthrobacter sp. NPDC089319

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: aquatic product

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Phocaeicola paurosaccharolyticus

ncbi_submitter: University of Queensland


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Iodobacter fluviatilis

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_isolation_source: stool

ncbi_organism_name: Dorea longicatena

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 51037


ncbi_country: USA: Hawaii

ncbi_isolation_source: Ocean

ncbi_strain_identifiers: ATCC 25920;CAIM 519T

ncbi_submitter: Naval Research Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio campbellii;x__Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920


ncbi_organism_name: Legionella sainthelensi

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: breast abscess

ncbi_organism_name: Cronobacter malonaticus LMG 23826

ncbi_submitter: Nestle Institute of Health Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_isolation_source: kidney

ncbi_organism_name: Francisella orientalis

ncbi_submitter: Aquacen - National Reference Laboratory for Aquatic Animal Diseases, Brazilian Ministry of Fisheries and Aquaculture and Laboratory of Cellular and Molecular Genetics, Federal University of Minas Gerais


ncbi_organism_name: uncultured Bilophila sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Normandie Univ


ncbi_organism_name: uncultured Lysobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Onion

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada: Mississauga

ncbi_isolation_source: bronchoalveolar lavage; a patient with a sporadic case

ncbi_strain_identifiers: Mississauga

ncbi_submitter: Public Health Ontario

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella;s__Legionella pneumophila;sb__Legionella pneumophila subsp. pneumophila;x__Legionella pneumophila subsp. pneumophila str. Mississauga


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Agathobacter rectalis


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Funiculus sociatus GB2-C1

ncbi_submitter: Institute of Hydrobiology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: France

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_organism_name: Treponema sp.


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella sp. S093_02758

ncbi_submitter: Zhejiang University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: USA

ncbi_isolation_source: Cecal Young Chicken

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: CVM N47608F

ncbi_submitter: FDA


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriales bacterium UBA5965

ncbi_submitter: University of Queensland


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wildermuthiibacteriota;s__Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_01_FULL_50_47


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Caldatribacteriota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;p__Candidatus Caldatribacteriota;x__unclassified Candidatus Caldatribacteriota;s__Candidatus Caldatribacteriota bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_43_32


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: World Institute of Kimchi


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1896R


ncbi_isolation_source: stool

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. 2010C-3472


ncbi_country: China: Huaian

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jiangsu Provincial Center for Disease Prevention and Control,China


ncbi_organism_name: Gaiellaceae bacterium


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: RIKEN-BRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: Italy

ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_strain_identifiers: NCPPB 2665

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: USA: Stebbins Cold Canyon Reserve (California)

ncbi_isolation_source: PO:0025082 | flower nectar

ncbi_organism_name: Acinetobacter pollinis

ncbi_submitter: Cornell University


ncbi_isolation_source: mutant lacking HAI2

ncbi_organism_name: Pectobacterium atrosepticum

ncbi_strain_identifiers: SCRI1043 DHAI2

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd.


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Texas Tech University


ncbi_country: Australia

ncbi_submitter: Monash University


ncbi_organism_name: Segatella copri

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Candidatus Fermentibacter danicus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus


ncbi_country: Russia: Saratov

ncbi_organism_name: Escherichia coli

ncbi_submitter: RARI


ncbi_country: China: Guangdong

ncbi_submitter: China Agricultural University


ncbi_isolation_source: water bottle; animal room

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Weill Cornell Medicine


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Herbaspirillum chlorophenolicum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus


ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Aerococcus viridans

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC058272


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_02_FULL_46_11


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Public Health Ontario lab


ncbi_assembly_name: freshwater MAG --- C4_bin-452

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: salt crust

ncbi_organism_name: Cyanobacteria bacterium QS_6_48_18

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium QS_6_48_18


ncbi_country: China: South China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_country: Austria: Wiestahlstausee

ncbi_isolation_source: alpine reservoir

ncbi_organism_name: Limnohabitans sp. WS1

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Bernardetiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Mycoplasmoides genitalium

ncbi_submitter: University of Alabama at Birmingham


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_organism_name: Bradyrhizobium sp. JR18.2

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: Switzerland

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Bern


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_country: Japan

ncbi_isolation_source: venous blood

ncbi_strain_identifiers: OCU Ac18

ncbi_submitter: Department of Bacteriology, Graduate School of Medicine, Osaka City University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Veterinary Research Institute


ncbi_country: China

ncbi_isolation_source: seawater surrounding coral Acropora digitifera under normal condition

ncbi_organism_name: Sphingomonas aquatilis

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_organism_name: Atlantibacter hermannii


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Fusobacterium varium


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Tolypothrix sp. LEGE 11397

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W76994_072512

ncbi_submitter: Broad Institute


ncbi_country: Switzerland:Lake Cadagno

ncbi_isolation_source: Lake Cadagno chemocline

ncbi_organism_name: Lamprocystis purpurea

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: Salinas; California

ncbi_isolation_source: Creek

ncbi_organism_name: Escherichia coli O26 str. RM8426

ncbi_submitter: USDA-ARS-WRRC-PSM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26;x__Escherichia coli O26 str. RM8426


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces exfoliatus

ncbi_strain_identifiers: NRRL B-2924

ncbi_submitter: University of Illinois


ncbi_country: New Zealand

ncbi_isolation_source: Environment - Horticulture

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_country: USA

ncbi_isolation_source: smoked seafood: smoked salmon

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Germany

ncbi_isolation_source: Basil

ncbi_organism_name: Serratia nevei

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Proteus terrae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: BLXSC

ncbi_submitter: Advanced Enzyme Technologies Limited


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia:Kuala Lumpur

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: Cote d Ivoire

ncbi_isolation_source: cassava fermentation

ncbi_organism_name: Weissella confusa

ncbi_submitter: Brigham Young University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Henan Provincial Hospital of Traditional Chinese Medicine


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: sichuan university


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom: England

ncbi_isolation_source: GOS pig 19 colon

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: The University of Nottingham


ncbi_organism_name: Xanthomonas hortorum pv. hederae

ncbi_strain_identifiers: WHRI 7185

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Poland

ncbi_isolation_source: soil

ncbi_strain_identifiers: BGSC 4BJ1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar wratislaviensis


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Australia: Sydney; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Altai

ncbi_isolation_source: shubat

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Gemella haemolysans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: body fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Microbacterium sp. MYb64

ncbi_submitter: Zoological Institute, Kiel University


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Hephaestia caeni

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Cypionkella sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Chryseobacterium indologenes


ncbi_organism_name: Microbacterium marinum


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EBI


ncbi_country: China

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_isolation_source: Distal colon

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: United Kingdom

ncbi_isolation_source: tomato stem

ncbi_organism_name: Pseudomonas corrugata

ncbi_submitter: JLU


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_submitter: University of Bologna


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: SAN Group Biotech Germany


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Pseudoxanthomonas sp.


ncbi_organism_name: Pseudomonas syringae pv. aptata

ncbi_submitter: University of Belgrade, Faculty of Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aptata


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_submitter: Monash University


ncbi_organism_name: Acidobacteria bacterium UBA890

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteria bacterium UBA890


ncbi_assembly_name: freshwater MAG --- YR_bin-4046

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces sp. NPDC058305

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Elusimicrobiales bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Flavobacterium sp.


ncbi_submitter: EPFL


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: Germany: Baltic Sea; Rostock

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Technische Universitaet Dresden, Medical Faculty 'Carl Gustav Carus'


ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_assembly_name: Rumen uncultured genome RUG13954

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Panyu

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Guangzhou Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Chitinispirillaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: soil

ncbi_organism_name: Glycomyces sp. NRRL B-16210

ncbi_submitter: University of Illinois


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China agriculture university


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_isolation_source: Turkey (Small intestine)

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Health Research Institutes


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter sp. TUM15379

ncbi_submitter: Toho University


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Methyloligella sp.

ncbi_submitter: Portland State University


ncbi_strain_identifiers: LT2 KO STM4019

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: anammox granule sludge

ncbi_organism_name: Candidatus Brocadiaceae baterium WH-1

ncbi_submitter: Chongqing university

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__Candidatus Brocadiaceae baterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__unclassified Candidatus Brocadiaceae;s__Candidatus Brocadiaceae baterium WH-1


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_country: Canada: Chicoutimi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: Rowley; Massachusetts

ncbi_isolation_source: untreated salt marsh sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Fusobacterium necrophorum

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: South Korea: Dangjin

ncbi_isolation_source: sea-tidal flat

ncbi_organism_name: Zhongshania aliphaticivorans

ncbi_submitter: Chung-Ang University


ncbi_country: South Korea

ncbi_isolation_source: Rhizosphere of Soybean

ncbi_submitter: Yonsei University


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_country: India: Hyderabad

ncbi_isolation_source: Caecum

ncbi_organism_name: Helicobacter pullorum

ncbi_submitter: University of Hyderabad


ncbi_country: Estonia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_isolation_source: lake water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Hangzhou Medical College


ncbi_assembly_name: freshwater MAG --- Erken-D4_bin-1272

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Acetobacter sp.


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: seeds

ncbi_organism_name: Methylobacterium sp. GC_Met_2

ncbi_submitter: Agriculture Victoria