ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_assembly_level: Contig

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


gtdb_representative: t

ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Gemmobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Holdemanella biformis


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: urinary tract

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Brazil: Vitoria

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Toho University


ncbi_organism_name: uncultured bacterium


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Sea-surface microlayer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonas sp. TWI929

ncbi_submitter: University of Technology Sydney


ncbi_country: Germany: Bavaria

ncbi_isolation_source: European foulbrood of honey bees-infected honey bee larva

ncbi_organism_name: Apilactobacillus kunkeei EFB6

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_assembly_level: Chromosome

ncbi_organism_name: Blattabacterium sp. DPU

ncbi_strain_identifiers: DPU

ncbi_submitter: University of Cincinnati


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured OCS116 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;x__OCS116 cluster;x__environmental samples;s__uncultured OCS116 cluster bacterium


ncbi_country: China: Liaoning province

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Malaysia: Kuala Pangsun village

ncbi_isolation_source: fecal sample

ncbi_organism_name: Holdemania massiliensis

ncbi_submitter: New York University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 314

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SNUC 2103

ncbi_submitter: University of Calgary


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Lake Ontario

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Belgium: Woluwe river

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Flavobacterium bizetiae

ncbi_refseq_category: reference genome

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: France

ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: NRRL BD-166

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Gungdong

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: China: Sichuan

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Kenya

ncbi_organism_name: Xenorhabdus griffiniae

ncbi_submitter: Elakistos Biosciences


ncbi_organism_name: Lysobacter capsici

ncbi_submitter: G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, PSCBR RAS


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture


ncbi_organism_name: Aerococcus christensenii


ncbi_country: USA: Maywood; IL

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: PA

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: UNIVERSITY OF PENNSYLVANIA


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_isolation_source: lake water

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China

ncbi_isolation_source: wastewater from WWTP

ncbi_submitter: Shandong University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: India: Hyderabad

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: University of Hyderabad


ncbi_country: Burkina Faso

ncbi_isolation_source: eggs

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Neisseria sp.


ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Bole;Xinjiang

ncbi_isolation_source: Raw chicken from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella quasivariicola

ncbi_submitter: URMITE


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV085


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium DTU015


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Vagina

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Maanshan

ncbi_isolation_source: sludge sample

ncbi_organism_name: Rhodococcus sp. JT-3

ncbi_submitter: Huaibei Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. JT-3


ncbi_country: Israel: Tel-Hashomer

ncbi_isolation_source: blood

ncbi_submitter: Sheba Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Sphingobacterium sp. UBA6746

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: USA: MA

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Acutalibacter muris


ncbi_country: Algeria

ncbi_isolation_source: Water treatment plant sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Sulfitobacter sabulilitoris

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Auburn University


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Jilin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Methylocystaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Microbacterium sp. NPDC089695

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin38

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MDV bin38

ncbi_submitter: Monash University


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas fulva


ncbi_organism_name: uncultured Rhizobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Pavia


ncbi_organism_name: Streptomyces sp. NPDC057199


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: Marinovum sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Candidatus Pacearchaeota archaeon

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;x__Candidatus Pacearchaeota;x__unclassified Candidatus Pacearchaeota;s__Candidatus Pacearchaeota archaeon


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Capital institution of Pediatrics


ncbi_organism_name: Actinobacillus seminis

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: S. Gallicano Institute, IRCCS


ncbi_country: Australia

ncbi_isolation_source: SauvBlanc

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom:Preston

ncbi_isolation_source: chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Alberta


ncbi_country: China: Shenzhen

ncbi_organism_name: Halobacillus litoralis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SRCAMB


ncbi_country: Sweden

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Fermentibacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;x__unclassified Candidatus Fermentibacterota;s__Candidatus Fermentibacterota bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Chicago


ncbi_country: China: Guangdong

ncbi_isolation_source: cloacal swab

ncbi_submitter: South China Agricultural University


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Second Affiliated Hospial of Zhejiang University, School of Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Streptomyces bobili

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Elainella sp. Prado103

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Sao Paulo; Ribeirao Preto

ncbi_isolation_source: blood

ncbi_submitter: Ribeirao Preto Medical School - USP


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Enterocola sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Enterocola;x__unclassified Candidatus Enterocola;s__Candidatus Enterocola sp.


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: Greece:Thermopyles geothermal spring

ncbi_isolation_source: geothermal water

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: University of Thessaly


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli KTE26

ncbi_submitter: Broad Institute

ncbi_type_material_designation: assembly designated as clade exemplar


ncbi_strain_identifiers: Sg (ex Schizaphis graminum)

ncbi_submitter: Uppsala Univ.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Buchnera;s__Buchnera aphidicola;x__Buchnera aphidicola (Schizaphis graminum);x__Buchnera aphidicola str. Sg (Schizaphis graminum)

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Asaia bogorensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Yersinia pestis CMCC106002

ncbi_submitter: Beijing Genomics Institute


ncbi_submitter: Oregon State University


ncbi_organism_name: Vampirovibrionaceae bacterium NZW_1234

ncbi_submitter: Smith College


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: UZ Gent


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Thomasclavelia cocleata


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacillus cereus

ncbi_submitter: BGI-Shenzhen


ncbi_country: South Korea: Suwon

ncbi_isolation_source: soil

ncbi_organism_name: Paenarthrobacter sp. DKR-5

ncbi_submitter: Kyungpook National University


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa BWHPSA003

ncbi_submitter: Broad Institute


ncbi_organism_name: Stutzerimonas balearica


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Legionella taurinensis


ncbi_organism_name: Cardiobacterium hominis


ncbi_organism_name: Microcoleus sp. AT9_A5

ncbi_submitter: Palacky University Olomouc


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Pacific Ocean: Monterey Canyon

ncbi_isolation_source: gill tissue

ncbi_organism_name: Candidatus Vesicomyosocius endoextente

ncbi_submitter: University of California Santa Cruz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Vesicomyidisocius;s__Candidatus Vesicomyosocius endoextente


ncbi_country: Kenya: Kibera

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Knee-joint exudate

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Edwardsiella ictaluri

ncbi_strain_identifiers: T3-F2 AAHRU

ncbi_submitter: USDA


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: Poultry

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: SOAPdenovo v1.06

ncbi_country: China: Shenzhen; Guangdong

ncbi_isolation_source: wound exudate of postoperative patients

ncbi_organism_name: Mycobacteroides abscessus 9808

ncbi_submitter: BGI


ncbi_assembly_name: freshwater MAG --- D-4_bin-50

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: China:Shandong; Jinan

ncbi_isolation_source: chicken manure compost soil

ncbi_organism_name: Bacillus sp. CN2

ncbi_submitter: Shandong University, lushanWang

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CN2


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Germany

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Germany:Bad Wildungen

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_isolate: SPRUCE 98

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 98

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paraburkholderia solisilvae

ncbi_strain_identifiers: NCAIM B.02539

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Blautia wexlerae


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5500

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5500


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: EPFL


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Ignavibacteria bacterium


ncbi_organism_name: Nocardia seriolae

ncbi_strain_identifiers: SDAT 0011

ncbi_submitter: Liaocheng university


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_isolation_source: dairy calf feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA


ncbi_country: Guam

ncbi_isolation_source: storm drain

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: North Carolina

ncbi_isolation_source: NCSU Equine Educational Unit

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: North Carolina State University


ncbi_isolation_source: Vegetables withMayonnaise

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: China: Suzhou

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium senegalense

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: Canada: Ontario

ncbi_isolation_source: rainbow trout tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_organism_name: Prevotella sp.


ncbi_country: Viet Nam: Thai Binh

ncbi_isolation_source: Environment

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: gut

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Connecticut Graf Lab


ncbi_country: Spain: Asturias

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Vibrio harveyi AOD131

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio harveyi;x__Vibrio harveyi AOD131


ncbi_organism_name: Paenibacillus sp. FSL R10-2796

ncbi_submitter: Penn State


ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aarhus University


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_country: Bangladesh: Gazipur

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Nakamurella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Phocoenobacter atlanticus subsp. atlanticus

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Clostridioides sp. ES-S-0108-01

ncbi_submitter: Northern Arizona University


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Arkansas Broiler farm

ncbi_isolation_source: bone from lame broiler

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_country: Canada: British Columbia

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Holdemanella biformis

ncbi_submitter: University of Trento


ncbi_organism_name: Candidatus Enterosoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Enterosoma;x__unclassified Candidatus Enterosoma;s__Candidatus Enterosoma sp.


ncbi_country: USA: Utah

ncbi_isolation_source: Water

ncbi_organism_name: Francisella tularensis subsp. novicida

ncbi_strain_identifiers: DPG 3A-IS

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: MiniBAL

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: LBMM 6407

ncbi_submitter: University of the Basque Country


ncbi_organism_name: uncultured Dysosmobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolation_source: wheat field soil

ncbi_organism_name: Bacillus sp. 7D3

ncbi_submitter: Jiangsu Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 7D3


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Caldilineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Sherbrooke

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: BIFSCo Region 2

ncbi_isolation_source: bovine hide

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum;x__Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1736


ncbi_isolation_source: Joint

ncbi_organism_name: Haemophilus sp. HMSC71H05

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Mesoflavibacter profundi


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: California

ncbi_isolation_source: Fermented olive; commercial processor

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: Ethiopia

ncbi_isolate: AB-B

ncbi_isolation_source: wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: AB-B

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_organism_name: Kiloniellales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: Guangdong Women and Children Hospital


ncbi_country: Brazil: Sao Jose do Rio Preto

ncbi_isolation_source: Ascitic Fluid

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: HBSJRP 10

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: BGI


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Japan

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: GUATP 107b

ncbi_submitter: Applied Biological Science, Gifu University


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-12475

ncbi_organism_name: uncultured Paracraurococcus sp.

ncbi_submitter: BILS


ncbi_isolation_source: spermoculture

ncbi_organism_name: Veillonella sp. 3891

ncbi_submitter: Institut Pasteur


ncbi_country: Brazil:Sao Paulo

ncbi_isolation_source: Ceca

ncbi_organism_name: Salmonella enterica subsp. enterica


ncbi_organism_name: Helcococcus kunzii

ncbi_strain_identifiers: FJ

ncbi_submitter: Nimes University Hospital


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital, Jiangxi Medical College, Nanchang University


ncbi_country: United Kingdom

ncbi_submitter: United State Department of Agriculture


ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul;x__Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfurimicrobium sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Bacillus cereus group sp. BceL305

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL305


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolate: AOP1_I1_surf _bin _25

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP1_I1_surf _bin _25

ncbi_submitter: Genoscope


ncbi_organism_name: Pseudomonas japonica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus sp. AZ090

ncbi_submitter: Broad Institute


ncbi_organism_name: Photobacterium profundum

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:313

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:313


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Streptomyces diastaticus


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC001691


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Auburn University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Clostridium fessum

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Georgia

ncbi_isolation_source: week A4 calf 87 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_isolation_source: Spontaneous mutant

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_organism_name: Acinetobacter sp. BD70

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_organism_name: Proteus sp. G2662

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2662


ncbi_country: India

ncbi_isolation_source: soil from cold environments

ncbi_organism_name: Paenibacillus sp. IHB B 3415

ncbi_strain_identifiers: IHB B 3415

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology, Palampur and Central Arid Zone Research Institute, Jodhpur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;x__unclassified Paenibacillus;s__Paenibacillus sp. IHB B 3415


ncbi_organism_name: Streptomyces sp. NPDC005373

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: CAU


ncbi_country: USA: St. Louis

ncbi_isolation_source: Endovascular

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Makerere University


ncbi_organism_name: uncultured Limnobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: national health research institutes


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_isolation_source: wastewater from WWTP

ncbi_submitter: Shandong University


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: NASA Ames Research Center


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: cerebral spinal fluid

ncbi_organism_name: Streptococcus pneumoniae GA54354

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Neisseria viridiae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Italy

ncbi_isolation_source: I. Vandecandelaere; Lab. Microbiology; Ghent Univ.; Belgium

ncbi_organism_name: Leisingera aquimarina DSM 24565

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- MJ120813B_bin-429

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Brazil: RJ

ncbi_isolation_source: soil sample collected from the site of a burning grass pile

ncbi_organism_name: Carbonactinospora thermoautotrophica

ncbi_strain_identifiers: C

ncbi_submitter: UFRJ


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yuanjiang; Yunnan Province

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. CB03238

ncbi_submitter: The Scripps Research Institute


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillales bacterium UBA3945

ncbi_submitter: University of Queensland


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_country: Russia: Moscow; Serebryannyi Bor city park

ncbi_isolation_source: salivary glands of 10 female ticks

ncbi_organism_name: Rickettsia endosymbiont of Ixodes ricinus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Nanchang

ncbi_isolation_source: Poyang Lake

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Catheter tips

ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10714

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Candidatus Avelusimicrobium pecoris

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: USA: Hawaii

ncbi_isolation_source: Eggs

ncbi_organism_name: Acinetobacter sp. S54

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Russia

ncbi_isolation_source: urethral swab

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_country: Colombia: Cali

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_isolation_source: human feces metagenome


ncbi_country: USA

ncbi_submitter: Cepheid


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Reinekea marina

ncbi_strain_identifiers: CECT 8288

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bryobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Monash University


ncbi_organism_name: Zoogloea ramigera

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: mucosa of vagina [UBERON:0004983]

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: TNO


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin64

ncbi_isolation_source: soil

ncbi_strain_identifiers: MDV bin64


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Halieaceae bacterium UBA4423

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: uncultured Elusimicrobia bacterium


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_country: Brazil

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: South Africa

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Thalassolituus sp.


ncbi_country: USA: Ann Arbor

ncbi_isolation_source: pressure sore

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Thailand: Chai Nat

ncbi_isolation_source: Nor-mai-dong; sour bamboo

ncbi_organism_name: Lactobacillus sp. GPB7-4

ncbi_submitter: Chandrakasem Rajabhat University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Health Sciences, Lahore


ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_organism_name: Halomonas sp. PAMB 3264

ncbi_strain_identifiers: PAMB 3264

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Sphingobacterium multivorum


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Bacteroidetes bacterium CHB5

ncbi_submitter: Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium CHB5


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;x__unclassified Candidatus Fermentibacterota;s__candidate division Hyd24-12 bacterium ADurb.Bin004


ncbi_organism_name: Kitasatospora sp. NPDC127116

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Five Islands Nature Reserve; NSW

ncbi_isolation_source: cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: OUTBREAK


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Campylobacter coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Poland

ncbi_submitter: Robert Koch Institute


ncbi_country: Pacific Ocean: South China Sea

ncbi_organism_name: Methylococcaceae bacterium CS3

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: EMG


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Georgia: Khelvachauri

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: NCDC Lugar Center


ncbi_organism_name: Leuconostoc suionicum

ncbi_submitter: Teagasc


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW306-2-2C-D06B

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Qingdao Agricultural Universtiy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: Faeces


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: conjugation and plant nodule

ncbi_organism_name: Mesorhizobium loti

ncbi_submitter: Curtin University


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces from Zagget the koala

ncbi_organism_name: Alistipes sp. Zagget8

ncbi_submitter: University of Queensland


ncbi_organism_name: Fusobacterium vincentii

ncbi_submitter: Forsyth Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 3 20 to 25cm

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Sichuan University


ncbi_country: USA: Upper Klamath Lake; OR

ncbi_isolation_source: UKL13 co-culture; a single cyanobacterial colony from a depth-integrated water sample grown as a non-axenic culture

ncbi_organism_name: Hyphomonadaceae bacterium UKL13-1

ncbi_submitter: Oregon State University


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Micromonospora rifamycinica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Irkutsk region; Pribaikalsky National Park

ncbi_isolation_source: 50 whole ticks

ncbi_organism_name: Rickettsia endosymbiont of Ixodes persulcatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Actinomyces viscosus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter sp. YH12099

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: MA

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Terriglobales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120229


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: Rivire St-Jean; Gasp; Quebec

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


gtdb_type_species_of_genus: t

ncbi_country: Pacific Ocean

ncbi_isolation_source: deep sea sediments

ncbi_organism_name: Anaeromicrobium sediminis

ncbi_submitter: the third institute of oceanography


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Belgium: Ghent

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: ANIWHA


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: TX

ncbi_isolation_source: Market Swine

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59862F

ncbi_submitter: FDA


ncbi_country: Panama: Bocas del Toro; Inner Solarte

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Paraeggerthella sp. LCP19S3_G8

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Muenster


ncbi_organism_name: Pseudomonas sp. OHS18

ncbi_submitter: University of Florence


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Aeromonas sp. 602200

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Parma


ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Jiangnan university


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen University


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus sp. ATD

ncbi_strain_identifiers: ATD

ncbi_submitter: St Joseph's College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ATD


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-04580

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolate: SPRUCE 425

ncbi_organism_name: Methylovirgula sp.

ncbi_strain_identifiers: SPRUCE 425

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: freshwater MAG --- LaPlata-7m-b_bin-352

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Massilia sp. X63

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Science


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Bacillus proteolyticus

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: CRN 1

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_country: China

ncbi_isolation_source: sediment

ncbi_organism_name: Paracoccus sediminicola

ncbi_strain_identifiers: SCSIO 76264

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_country: France: Durance River

ncbi_isolation_source: fresh river water

ncbi_organism_name: Dickeya zeae

ncbi_submitter: Sorbonne University


ncbi_organism_name: Vibrio sp. 1942

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: San Diego

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: San Diego State University


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Streptomyces sp. NPDC007095

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pyrinomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Anaerostipes rhamnosivorans

ncbi_submitter: Wageningen University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Zhejiang university


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_isolation_source: Polystyrene-feeding group superworm feces

ncbi_organism_name: Candidatus Enterococcus leclercqii

ncbi_submitter: The University of Queensland


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Oman

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_country: Brazil: Florianopolis

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Centre for Food Safety


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bacteroides vicugnae

ncbi_submitter: University of Oklahoma


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: CRC RESIST


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: Peru

ncbi_submitter: SC


ncbi_organism_name: Nocardioides kribbensis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: Likely Sputum

ncbi_organism_name: Mycobacterium tuberculosis H37Rv

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Massilia sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Amoebophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MO

ncbi_isolation_source: stool sample of individual with bacteremia

ncbi_organism_name: Serratia marcescens MC458

ncbi_submitter: The Genome Institute


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S13

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0649

ncbi_isolation_source: lake water

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Methylorubrum extorquens

ncbi_strain_identifiers: SLI 231

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: sediment

ncbi_organism_name: Geobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: endosphere

ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: NIOO KNAW


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Milan


ncbi_organism_name: Hyphomicrobiaceae bacterium


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces lavendulocolor

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Candidatus Poriferisodalis sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Candidatus Poriferisodalaceae;g__Candidatus Poriferisodalis;x__unclassified Candidatus Poriferisodalis;s__Candidatus Poriferisodalis sp.


ncbi_organism_name: Paraclostridium tenue

ncbi_submitter: Nanjing Medical University


ncbi_isolate: AOP30_C2_surf _bin _26

ncbi_organism_name: Leuconostoc falkenbergense

ncbi_strain_identifiers: AOP30_C2_surf _bin _26

ncbi_submitter: Genoscope


ncbi_isolate: AOP5_GZ1_surf _bin _8

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP5_GZ1_surf _bin _8


ncbi_organism_name: Morganella sp. YQ_1

ncbi_submitter: WenZhou Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Morganella;x__unclassified Morganella (in: enterobacteria);s__Morganella sp. YQ_1


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptomyces anthocyanicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Acidobacteria bacterium UBA823

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteria bacterium UBA823


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Auckland


ncbi_organism_name: Paraburkholderia caribensis

ncbi_submitter: The James Hutton Institute


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: India: Chandigarh

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Brevibacillus sp. SKDU10

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Brazil

ncbi_isolation_source: Meconium

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Tibet

ncbi_isolation_source: shore soil of salt lake

ncbi_organism_name: Haliea sp. E1-2-M8

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Peritoneal Fluid

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Nonomuraea sp. NPDC052129


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: Technical University of Denmark


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: Screening

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Charles University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2599185318 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC13-1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Klebsiella sp. GG_Kp141

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA

ncbi_isolation_source: rectal swab

ncbi_submitter: NISC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae KPNIH18


ncbi_assembly_name: IMG-taxon 2596583578 annotated assembly

ncbi_organism_name: Serratia nematodiphila


ncbi_country: Japan:Tokyo; Tokyo Bay

ncbi_isolation_source: marine sediment

ncbi_organism_name: Nitrosococcus oceani

ncbi_submitter: Research Institute of Green Science and Technology, Shizuoka University


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: University of Queensland


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Clemson University


ncbi_isolation_source: respiratory

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Enterococcus hermanniensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Neisseria sicca

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Ruminococcus bromii L2-63

ncbi_submitter: PipelineServices


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Variovorax paradoxus


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured OM182 clade bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;x__environmental samples;s__uncultured OM182 clade bacterium


ncbi_country: USA: DC

ncbi_isolation_source: Throat (pharynx)

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Pseudoduganella flava

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: University College Cork


ncbi_country: China: Fujian

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridioides difficile CD43

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Kimchi

ncbi_organism_name: Levilactobacillus koreensis JCM 16448

ncbi_submitter: Shanghai Majorbio


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: urine

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_organism_name: Providencia stuartii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Exiguobacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp.


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: patient


ncbi_organism_name: Bacteroides stercoris


ncbi_country: China

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_country: Australia: Sydney

ncbi_isolation_source: Hospital ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: i3 Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii MRY12-0277

ncbi_submitter: National Institute of Infectious Diseases, Japan


ncbi_country: USA: Loyola University

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Ignavibacteria bacterium UBA5771

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium UBA5771


ncbi_country: China: Shenzhen

ncbi_submitter: BGI


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: Environment

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Devosia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA

ncbi_isolation_source: ENVIRONMENT

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: Tapioca starch

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: Jeneil Biotech Inc.


ncbi_organism_name: uncultured Sunxiuqinia sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolate: MBFCJKGF

ncbi_organism_name: Candidatus Stammera capleta

ncbi_strain_identifiers: MBFCJKGF

ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Helicobacter hepaticus

ncbi_submitter: EMG


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Australia: south east Tasmania

ncbi_isolation_source: gastrointestinal mucosa

ncbi_organism_name: Aliivibrio sp. S4MY2

ncbi_submitter: University Of Tasmania, Tasmania Inst Agriculture


ncbi_organism_name: Brucella abortus bv. 1 str. 9-941

ncbi_submitter: University of Minnesota

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus bv. 1;x__Brucella abortus bv. 1 str. 9-941


ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: GS De Novo Assembly

ncbi_country: India: Gujarat

ncbi_isolation_source: salt crystallizer of the Little Rann of Kutch

ncbi_organism_name: Bacillus sp. SB47

ncbi_submitter: Directorate of Groundnut Research (Indian Council of Agricultural Research)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SB47


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_isolation_source: ballast tank

ncbi_organism_name: Thiogranum sp.

ncbi_submitter: Shandong university


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: France

ncbi_isolation_source: wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pseudomonas alloputida

ncbi_submitter: Brigham Young University


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Tenebribacter burtonii

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__Candidatus Tenebribacter;s__Candidatus Tenebribacter burtonii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__Candidatus Cloacimonadales incertae sedis;g__Candidatus Tenebribacter;s__Candidatus Tenebribacter burtonii


ncbi_organism_name: Streptomyces sp. NPDC018038

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mammal; other: Fecal

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: University of Glasgow


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Duodenibacillus massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces sp. NPDC056323


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Morocco: Legzira

ncbi_isolation_source: Shore seawater

ncbi_organism_name: Vibrio sp. MOR3

ncbi_submitter: University of Cambridge


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY