ncbi_country: India: Nagpur

ncbi_isolation_source: Domestic sewage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


gtdb_representative: f

ncbi_country: China: Guangdong

ncbi_isolation_source: fresh flowers

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: South China Agricultural University


ncbi_assembly_level: Contig

ncbi_country: USA: Madison; WI

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_assembly_level: Complete Genome

ncbi_country: Japan

ncbi_isolation_source: free-living

ncbi_organism_name: Mycolicibacterium smegmatis MKD8

ncbi_submitter: Wadsworth Center, New York State Dept of Health


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Intestinimonas stercoravium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Intestinimonas;s__Candidatus Intestinimonas stercoravium


ncbi_isolation_source: bovine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Reading


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Prevotella sp. AG:487_50_53


ncbi_country: Hong Kong

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Hong Kong


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Neisseria viridiae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Austria: Vienna

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Acinetobacter gandensis

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Campylobacter rectus

ncbi_submitter: EMG


ncbi_isolation_source: sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Paenibacillus allorhizoplanae

ncbi_refseq_category: reference genome

ncbi_submitter: Institut Pasteur

ncbi_type_material_designation: assembly from type material


ncbi_assembly_name: Rumen uncultured genome RUG13307

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Candidatus Spyradenecus sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Lentisphaerales;f__Lentisphaeraceae;x__Lentisphaeraceae incertae sedis;g__Candidatus Spyradenecus;x__unclassified Candidatus Spyradenecus;s__Candidatus Spyradenecus sp.


ncbi_organism_name: Wolbachia sp.

ncbi_submitter: Faculty of Science, University of South Bohemia


ncbi_organism_name: Candidatus Midichloriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;x__unclassified Candidatus Midichloriaceae;s__Candidatus Midichloriaceae bacterium


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Roseibium sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eggerthella lenta


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: Germany: Goettingen

ncbi_organism_name: Wolbachia endosymbiont of Tribolium confusum

ncbi_strain_identifiers: wCon

ncbi_submitter: Georg-August University Goettingen


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG10687

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Guangxi

ncbi_submitter: Nanjing Agriculture University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Urethral

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-150

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_strain_identifiers: new MAG-150

ncbi_submitter: Micoorganism


ncbi_organism_name: Escherichia coli 1827-70

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: EMG


ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Fish hatchery

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_organism_name: Roseibium sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Borreliella garinii

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_isolation_source: Environmental sponge

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA: International Space Station

ncbi_isolation_source: Nomex 6

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: water

ncbi_organism_name: Hymenobacter sp. DG01

ncbi_submitter: Nanjing Normal University


ncbi_isolation_source: feces

ncbi_organism_name: Slackia equolifaciens

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_isolation_source: human gut metagenome


ncbi_country: Canada: Alberta

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


gtdb_type_species_of_genus: t

ncbi_isolation_source: activated sludge for phosphorus removal

ncbi_organism_name: Gemmatimonas aurantiaca T-27

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Italy: Florence

ncbi_isolation_source: nose lavage

ncbi_submitter: University of Trento


ncbi_country: Australia: Brisbane

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: The University of Queensland


ncbi_country: USA

ncbi_organism_name: Shinella zoogloeoides

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: Tunisia

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: LMBA


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_level: Chromosome

ncbi_country: USA: MN

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Prosthecobacter debontii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Montreal

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Sweden: Botkyrka

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Uppsala University


ncbi_country: United Kingdom

ncbi_isolation_source: Guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_country: Canada: Toronto

ncbi_submitter: Universite Laval


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Viridibacillus arvi

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: South Africa: Thulasizwe Hopsital

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0019

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: Infant 1 DOL 23 skin

ncbi_organism_name: Streptococcus mitis


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: USA: California

ncbi_organism_name: Pseudomonas syringae pv. maculicola

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. maculicola


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_strain_identifiers: FT 84

ncbi_submitter: Spiez Laboratory


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oenococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: Alabama

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom: Scotland

ncbi_submitter: University of Glasgow


ncbi_organism_name: Streptomyces longispororuber

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: FSQ

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: BGI


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_organism_name: Proteus faecis

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Neisseria sp.


ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Yuanjiang; Yunnan Province

ncbi_organism_name: Streptomyces sp. CB03234

ncbi_submitter: The Scripps Research Institute


ncbi_organism_name: Paraburkholderia guartelaensis

ncbi_submitter: The James Hutton Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Vibrio coralliilyticus

ncbi_submitter: Center for Genomics and Bioinformatics, Indiana University


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_submitter: URMC


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Costa Rica: Guanacaste Conservation Area

ncbi_isolation_source: insect

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: Kenya: Vihiga

ncbi_isolation_source: red volcanic soil on cultivated land

ncbi_organism_name: Xenorhabdus griffiniae

ncbi_submitter: Goethe University Frankfurt


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Nocardia sp. NPDC088792

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Liverpool School of Tropical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Coprococcus sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Polaromonas sp.


ncbi_organism_name: Geobacillus thermodenitrificans

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0866

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: AAFC


ncbi_assembly_name: IMG-taxon 2654588178 annotated assembly

ncbi_organism_name: Bacteroidales bacterium KHT7

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium KHT7


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Prevotella melaninogenica D18

ncbi_submitter: Broad Institute


ncbi_country: China: Beijing

ncbi_isolation_source: ceacal content

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Chinese Academy of Science


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Afipia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Pseudoflavonifractor sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: CDC


ncbi_organism_name: Bradyrhizobium sp. AZCC 2176

ncbi_strain_identifiers: AZCC 2176

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_assembly_name: Rumen uncultured genome RUG12347

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Paraclostridium tenue

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Philippines: Calatagan; Batangas

ncbi_organism_name: Cellvibrionaceae bacterium AOL6

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhejiang

ncbi_isolation_source: food

ncbi_organism_name: Salmonella sp. zj-f72

ncbi_submitter: Shenzhen People's Hospital


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-b_bin-468

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: mesocosm experiment

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_assembly_name: IMG-taxon 2706794921 annotated assembly

ncbi_organism_name: Novosphingobium panipatense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Denmark: Vejle

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Sygehus Lillebaelt

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: SC


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Streptomyces sp. NPDC020947

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Perm region

ncbi_isolation_source: oil-polluted soil

ncbi_organism_name: Rhodococcus erythropolis

ncbi_strain_identifiers: IEGM 267

ncbi_submitter: Institute of Ecology and Genetics of Microorganisms


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Finland: Lake Vesijarvi; Lahti

ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Dolichospermum sp. UHCC 0299

ncbi_strain_identifiers: UHCC 0299

ncbi_submitter: University of Helsinki


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_submitter: BIOTEC


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: national health research institutes


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolate: human

ncbi_organism_name: Mycobacterium riyadhense

ncbi_strain_identifiers: DSM 45176;human

ncbi_submitter: Intitut Pasteur Paris


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Russia: the Bol shoye Kholodnoye Lake; Yamalo-Nenets Autonomous Okrug; Tyumen region

ncbi_isolation_source: water

ncbi_organism_name: Rhodococcus sp. IEGM 1307

ncbi_strain_identifiers: IEGM 1307

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. IEGM 1307


ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Clostridium sp. HMSC19C05

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Mexico: Los Bancos; Pueblo Nuevo municipality; Durango

ncbi_isolation_source: gut

ncbi_organism_name: Rahnella contaminans

ncbi_submitter: ENCB-IPN


ncbi_organism_name: Aeromonas sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: AR

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: Sweden

ncbi_isolation_source: punctuat

ncbi_organism_name: Mycobacterium tuberculosis BTB11-210

ncbi_submitter: Broad Institute


ncbi_submitter: Federal Insitute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute of Health, Department of Medical Sciences


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Japan

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Atlantic Ocean: Mid-Cayman Rise

ncbi_isolation_source: sea water from hydrothermal vent

ncbi_organism_name: Caldilineae bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: Murine leukaemia tissue culture cell line

ncbi_organism_name: Haploplasma axanthum

ncbi_submitter: SC


ncbi_isolation_source: ground turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:-;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM N20028


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Comamonas kerstersii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Methylophaga sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Zurich


ncbi_organism_name: Enterobacter sp. BNK-34

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Acetomicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: MIT


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Scybalocola faecigallinarum

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Mexico

ncbi_isolation_source: feces (Mus musculus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Enterococcus durans

ncbi_submitter: Icahn School of Medicine


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The University of Queensland


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Radboud University


ncbi_country: Nigeria

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Cepheid


ncbi_country: India: Mysore

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: University of Hyderabad


ncbi_isolation_source: patient with cholera-like diarrhea

ncbi_organism_name: Vibrio cholerae O1 str. Amazonia

ncbi_strain_identifiers: Amazonia

ncbi_submitter: Federal University of Rio de Janeiro

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. Amazonia


ncbi_country: China: Chongqing; Wanzhou; Houshan

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Ghent University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: vegetable

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Methylopila capsulata

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Australia: Sydney

ncbi_isolation_source: Snail

ncbi_organism_name: Buttiauxella warmboldiae

ncbi_submitter: University of Gothenburg - CCUG


ncbi_submitter: University of Surrey


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Nostocaceae cyanobacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Streptomyces achromogenes


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: British Columbia

ncbi_isolation_source: lymph node

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin;x__Salmonella enterica subsp. enterica serovar Dublin str. SA20093032


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_country: Mexico: Mexico city

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Mexicano del Seguro Social CMN SigloXXI


ncbi_organism_name: Clostridium sp. TM06-18

ncbi_submitter: BGI


ncbi_organism_name: Actinoplanes sp. NPDC048796

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas sp. GD03958

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Germany: Kiel

ncbi_isolation_source: Salad leaves

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: South Africa:Carltonville

ncbi_isolation_source: water

ncbi_organism_name: Thiobacillus sp. UBA2597

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_submitter: North South University


ncbi_organism_name: Tardiphaga sp. 813_E8_N1_3

ncbi_submitter: VIB


ncbi_country: Portugal: Felgueiras

ncbi_isolation_source: piggery air

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Bacteroidales bacterium UBA7268

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA7268


ncbi_organism_name: Allorhizobium ampelinum

ncbi_submitter: Oregon State University


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Patescibacteria group bacterium UBA6017

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA6017


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Brazil: Presidente Prudente

ncbi_isolation_source: tracheal secretion

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Nigeria

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Cardiff University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Mahidol University


ncbi_assembly_name: Rumen uncultured genome RUG12937

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eubacterium limosum

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Sphingobacterium spiritivorum

ncbi_submitter: Universite Paris Saclay


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_isolation_source: Halichoerus grypus

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_isolation_source: sheep gut metagenome


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: Argentina: Provincia de Rio Negro

ncbi_isolation_source: Patagonian Merlot Wine

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Universidad Nacional de Quilmes


ncbi_country: China: Guangxi

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: uncultured Paludibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Zurich


ncbi_organism_name: Candidatus Faecimonas sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Faecimonas;x__unclassified Candidatus Faecimonas;s__Candidatus Faecimonas sp.


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Schaalia turicensis

ncbi_submitter: EMG


ncbi_organism_name: Pantoea allii

ncbi_submitter: University of Georgia


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: JNTUH


ncbi_organism_name: Bacillus cereus group sp. BceL008

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL008


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_country: USA: Soudan Iron Mine; Minnesota

ncbi_isolation_source: brine fluids

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 51

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli KTE182

ncbi_submitter: Broad Institute


ncbi_organism_name: Psychrobacter pacificensis

ncbi_submitter: Tang lab


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Desulfotignum sp.

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Nitrosococcus watsonii C-113

ncbi_submitter: US DOE Joint Genome Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rickettsia typhi


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Shanghai MasScience Genomics Core

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: metabat2_XCR1_HOM_6759_bwa.55 MAG

ncbi_organism_name: uncultured Agathobaculum sp.

ncbi_strain_identifiers: metabat2_XCR1_HOM_6759_bwa.55 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environment

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: Czech Academy of Science


ncbi_organism_name: Bacillus sp. 1NLA3E

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 1NLA3E


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: Sweden: Umea

ncbi_isolation_source: human oral cavity

ncbi_organism_name: Mogibacterium neglectum

ncbi_submitter: The Forsyth Institute


ncbi_organism_name: Escherichia coli 103385

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_strain_identifiers: JEB8 MIAE 10523

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: McGill University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Octadecabacter sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Chile

ncbi_isolation_source: kelp gull (Larus dominicanus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:b:-


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium UBA1075

ncbi_submitter: University of Queensland


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lawsonibacter asaccharolyticus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae UCI 25

ncbi_strain_identifiers: UCI 25

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae UCI 25


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Succinatimonas sp. CAG:777

ncbi_submitter: DTU


ncbi_organism_name: Nitrospirillum sp. BR 11828

ncbi_submitter: Embrapa


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_country: China: Qinghai Province

ncbi_isolation_source: trachea

ncbi_organism_name: Carnobacteriaceae bacterium zg-C25

ncbi_submitter: China CDC


ncbi_organism_name: Corynebacterium callunae

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Pakistan: Rawalpindi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National University of Sciences and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: USA

ncbi_isolation_source: UTI

ncbi_organism_name: Pseudomonas aeruginosa U2504


ncbi_country: Canada: Bonnybrook

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_assembly_name: Rumen uncultured genome RUG12994

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: USA: New Brighton; MN

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_submitter: Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces violaceusniger group;s__Streptomyces antimycoticus;sb__Streptomyces antimycoticus subsp. sporoclivatus


ncbi_country: USA: Boston; MA

ncbi_isolation_source: abdominal wound

ncbi_organism_name: Staphylococcus aureus M0570

ncbi_submitter: Broad Institute


ncbi_country: Serbia

ncbi_isolation_source: abdomen

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India: North Guwahati Town; Guwahati; Assam

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Pseudactinotalea sp.


ncbi_organism_name: Nocardia sp. NPDC057663

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Emcibacter sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Streptococcus suis

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin35

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: KAP bin35

ncbi_submitter: Monash University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Phetchabul

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Faculty of Public Health


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan: Kanagi-machi; Aomori Pref.

ncbi_organism_name: Pseudomonas coronafaciens pv. oryzae

ncbi_strain_identifiers: ICMP 9088

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. oryzae


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Pauljensenia sp.

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Coprococcus sp.


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_isolation_source: feces

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: South Africa: Limpopo

ncbi_isolation_source: pristine grassland at 1080-1155 m

ncbi_organism_name: Burkholderia sp. Nafp2/4-1b

ncbi_submitter: Agricultural Research Council


ncbi_organism_name: Algoriella sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-177-06_S4_C3

ncbi_submitter: IGS


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_organism_name: Pandoraea pneumonica

ncbi_submitter: Hainan General Hospital


ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Leptotrichia hongkongensis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Japan

ncbi_isolation_source: sputum of a patient suspected with respiratory tract infection

ncbi_organism_name: Nocardia sputorum

ncbi_submitter: Fukushima Medical University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-180

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Zoogloeaceae bacterium

ncbi_strain_identifiers: new MAG-180

ncbi_submitter: Micoorganism


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Terrybacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Terryibacteriota;x__unclassified Candidatus Terrybacteria;s__Candidatus Terrybacteria bacterium


ncbi_organism_name: uncultured Porticoccaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: Top soil

ncbi_organism_name: Paraburkholderia gardini

ncbi_submitter: GHENT UNIVERSITY


ncbi_organism_name: uncultured bacterium


ncbi_country: Germany: Kiel

ncbi_isolation_source: Mixed salad

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: tundra soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Russia: Karelia

ncbi_isolation_source: mat from coastal zone of meromictic lakes Green cape

ncbi_organism_name: Prosthecochloris sp. ZM

ncbi_strain_identifiers: ZM

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Slovenia: Ihan; pig farm

ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: University of Ljubljana


ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Guangxi

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus parasuis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Baltimore

ncbi_isolation_source: patient fluids

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Johns Hopkins University


ncbi_country: USA

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans NVAB

ncbi_strain_identifiers: NVAB

ncbi_submitter: Cornell University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Bacillus sp. JJ675

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JJ675


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: New Zealand

ncbi_isolation_source: apricot

ncbi_organism_name: Pseudomonas syringae

ncbi_strain_identifiers: ICMP 4122

ncbi_submitter: New Zealand Institute for Plant & Food research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: sputum

ncbi_submitter: Charles University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Veillonella montpellierensis


ncbi_organism_name: Glutamicibacter sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Candidatus Planktophila sp.

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__environmental samples;s__uncultured Candidatus Planktophila sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_strain_identifiers: B123;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Greece

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: CIRM BIA 1581

ncbi_submitter: Agroscope


ncbi_organism_name: Sneathia sanguinegens


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Minesota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa15

ncbi_submitter: King Abdullah University Science and Technology


ncbi_isolation_source: water

ncbi_submitter: Tianjin Centers for Disease Control and Prevention


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Indian Institute of Technology


ncbi_country: France

ncbi_isolation_source: birch sap

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: CIRM-BIA 1869

ncbi_submitter: Brigham Young University


ncbi_organism_name: Cognatishimia sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: gastric antrum of patient with gastric cancer

ncbi_organism_name: Helicobacter pylori D33

ncbi_submitter: Qingdao municipal Hospital


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Guangdong Province

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chryseobacterium sp. Y16C

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroides xylanisolvens


ncbi_country: Netherlands

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: Ghent University


ncbi_country: Russia

ncbi_isolation_source: nasopharynx from a pediatric patient

ncbi_organism_name: Streptococcus pneumoniae 1719

ncbi_submitter: Research Institute of Physical-Chemical Medicine, Moscow, Russia


ncbi_country: USA: BIFSCo Region 3

ncbi_isolation_source: stool

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331


ncbi_isolation_source: ear swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Pseudomonas taetrolens

ncbi_submitter: SC


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Candidatus Limiplasma pullicola

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__;g__Candidatus Limiplasma;s__Candidatus Limiplasma pullicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma pullicola


ncbi_organism_name: Luteibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Cribrihabitans pelagius

ncbi_submitter: Yantai University


ncbi_organism_name: Salmonella sp. NW1067

ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Institut de Ciencies del Mar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC057910

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Opitutia bacterium UBA977

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA977


ncbi_organism_name: Salmonella sp. NW1078


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: The First Affiliated Hospital College of Medicine Zhejiang University


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_assembly_name: BVI

ncbi_isolate: BVI

ncbi_isolation_source: vaginal fluid

ncbi_organism_name: Streptococcus anginosus

ncbi_strain_identifiers: BVI

ncbi_submitter: CEBITEC


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Nesterenkonia sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Laboratory of Genome Science, Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology


ncbi_country: Japan

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Instituto de Quimica


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Bellilinea sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- Umea2_bin-0778

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: host stool sample

ncbi_organism_name: Alistipes senegalensis JC50

ncbi_submitter: URMITE CNRS UMR 6236 IRD 198


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: cow carcass

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr Institute of Microbiology, Munich, Germany


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: Thailand

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S073

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S073


ncbi_organism_name: Vibrio sp.

ncbi_submitter: The University of Auckland


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_isolation_source: food additive Floractin

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: Germany: Giessen

ncbi_submitter: Bundeswehr


ncbi_country: Spain

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: Asaia siamensis

ncbi_submitter: Ghent University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: The Lu'an People's Hospital


ncbi_country: Thailand: Ratchaburi

ncbi_isolation_source: natural water sources close by farm or community

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Chulalongkorn University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Panacagrimonas sp.

ncbi_submitter: Colorado State University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Italy: Apulia

ncbi_isolation_source: blood culture

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 270

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hong Kong

ncbi_isolation_source: Eye swab of a patient with Conjunctivitis

ncbi_organism_name: Tsukamurella pulmonis

ncbi_submitter: The University of Hong Kong, Hong Kong, China


ncbi_organism_name: Paenibacillus sp. FSL H7-0941

ncbi_submitter: Penn State


ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: wastewater

ncbi_organism_name: Deinococcus actinosclerus

ncbi_strain_identifiers: Deinococcus actinosclerus SJTR

ncbi_submitter: Shanghai Jiaotong University


ncbi_country: USA

ncbi_submitter: United States Department of Agriculture


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter sp. AOR39_HL

ncbi_submitter: Peking University People's Hospital


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV265

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: docusate laxative

ncbi_organism_name: Burkholderia sp. HI4860

ncbi_submitter: University of Michigan


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Vagina

ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Slovenia

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C80_08

ncbi_submitter: IGS


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Aquisediminimonas sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: Rahnella inusitata

ncbi_submitter: University of Alberta


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_submitter: Sun Yat-sen University


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: animal manure

ncbi_organism_name: Parablautia intestinalis

ncbi_submitter: Chinese Academy of Science


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Escherichia coli MS 84-1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Lysobacter sp. Root667

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Mycolicibacter engbaekii

ncbi_submitter: University of Trento


ncbi_organism_name: Lautropia sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: EMG


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad de Zaragoza, Facultad de Veterinaria


ncbi_assembly_name: IMG-taxon 2654588176 annotated assembly

ncbi_organism_name: Lachnospiraceae bacterium KH1T2

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: University of Pavia


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD7086

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan: Fushan; Yilan

ncbi_isolation_source: brewer s grain

ncbi_organism_name: Vagococcus silagei

ncbi_submitter: FIRDI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Russia: Moscow

ncbi_isolation_source: feces of healthy child (3 years and 7 months old; male)

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Erythrobacter sp. 34-65-8


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Liptonbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Liptoniibacteriota;x__unclassified Candidatus Liptonbacteria;s__Candidatus Liptonbacteria bacterium


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Apotomis turbidana


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 2

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Greece: Western Macedonia

ncbi_isolation_source: artisanal Greek Kefalograviera cheese

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_submitter: Nanjing Drum Tower Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Weihai

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodosalinus sediminis


ncbi_assembly_name: freshwater MAG --- KR_bin-0213

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_country: Australia: NSW

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Toho University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Sutterella merdavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bacteroides congonensis


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: Taiwan

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: National Chung Cheng University


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Acidaminococcus provencensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_country: Hong Kong: Pokfulam

ncbi_isolation_source: Stormwater drain

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_isolate: AOP29_A1_coeur _bin _11

ncbi_organism_name: Cellulosimicrobium funkei

ncbi_strain_identifiers: AOP29_A1_coeur _bin _11

ncbi_submitter: Genoscope


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Australia: Sydney; NSW

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Queensland


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli O128:H27

ncbi_submitter: CDC


ncbi_country: France

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: INSERM U1047


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hubei

ncbi_isolation_source: soil

ncbi_organism_name: Solibacillus sp. R5-41

ncbi_submitter: China Agricultural University


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0298942.1

ncbi_submitter: IGS


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 16_2


ncbi_country: Spain

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: liver

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG11916

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Arcobacter nitrofigilis

ncbi_submitter: University Duisburg-Essen


ncbi_country: South Korea

ncbi_isolation_source: Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Seoul National University


ncbi_organism_name: Moraxella sp. CTOTU47724


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella variicola


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Citroniella saccharovorans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Psychrobacter alimentarius

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Streptococcus sp. 2021WUSS109

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chouaib Doukkali University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark