ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;s__Candidatus Staskawiczbacteria bacterium RIFOXYC2_FULL_37_19


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: United Kingdom

ncbi_genome_representation: full

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


gtdb_representative: t

ncbi_isolation_source: rhizosphere soil culture M52

ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_organism_name: Burkholderia stabilis

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)


gtdb_type_species_of_genus: t

ncbi_organism_name: Thomasclavelia ramosa DSM 1402

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_assembly_level: Complete Genome

ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Estonia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 222

ncbi_submitter: Ghent University


ncbi_organism_name: Janthinobacterium sp. DSP2-3-3

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Blastochloris sp.


ncbi_organism_name: Patiriisocius sp. Uisw_047

ncbi_submitter: University of Washington


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Salmonella sp. SKLX108448

ncbi_submitter: Zhejiang university


ncbi_organism_name: Marinovum sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Loc090907-8m_bin-184

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Bethesda

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Penn State


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Collinsella tanakaei

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Human

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coprococcus sp.


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_country: Russia: Bering Sea; 109 miles east of Kamchatka Peninsula

ncbi_isolation_source: marine sponge

ncbi_organism_name: Pseudoalteromonas distincta

ncbi_submitter: University of Missouri

ncbi_type_material_designation: assembly from type material


ncbi_country: Puerto Rico: Cabo Rojo

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Palauibacterales bacterium

ncbi_submitter: Universidad de Alicante

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;x__unclassified Candidatus Palauibacterales;s__Candidatus Palauibacterales bacterium


ncbi_country: Finland

ncbi_isolation_source: brook

ncbi_organism_name: Enterococcus rivorum

ncbi_submitter: CDC


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Rumen uncultured genome RUG11753

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: freshwater MAG --- AM-2014-D6_bin-031

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Japan

ncbi_submitter: Toho university


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Cyanobacteria bacterium P01_D01_bin.123

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_D01_bin.123


ncbi_country: USA: Chicago

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: uncultured Caulobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_submitter: Sultan Qaboos University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: skin salmon

ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: FDA/CFSAN


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Deinococcus sp.

ncbi_submitter: EPFL


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_assembly_name: freshwater MAG --- Loc080925-8-8m_bin-374

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus Rd.3

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine

ncbi_organism_name: Cobetia sp.

ncbi_submitter: University of Queensland


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_country: China: Jiangxi; Yinshan

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Jinan University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Phocaeicola vulgatus


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-0015

ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Finland: Olkiluoto

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0298942.3

ncbi_submitter: IGS


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (64 uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: human gut

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: EMG


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1905R


ncbi_country: South Korea: Ulleung island

ncbi_isolation_source: seawater

ncbi_organism_name: Shewanella saliphila

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Enterococcus faecalis EnGen0242


ncbi_country: Belgium

ncbi_isolation_source: MiSeq assembly G100 R274

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sciensano


ncbi_country: Japan

ncbi_isolation_source: river sediment

ncbi_organism_name: Geomesophilobacter sediminis

ncbi_refseq_category: reference genome

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Kluyvera intermedia

ncbi_submitter: McGill University


ncbi_assembly_name: Rumen uncultured genome RUG10604

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Saint Louis; MO

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Washington University in St. Louis


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Salmonella sp. NW1260

ncbi_submitter: Sichuan University


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: dtu national food institute


ncbi_organism_name: Acetobacter orientalis

ncbi_submitter: Teagasc


ncbi_submitter: Hainan Medical University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Mucilaginibacter sp. UC70_90

ncbi_submitter: The Connecticut Agricultural Experiment Station


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_submitter: EMG


ncbi_organism_name: uncultured Sedimenticola sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13735

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northumbria University


ncbi_organism_name: uncultured Pseudonocardia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Raoultella sp. BIGb0132

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_isolation_source: skin of face; 6 single-cells amplified by MDA combined with human skin metagenome reads

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: bioBiome, Inc.


ncbi_country: USA

ncbi_isolation_source: tomato pulp

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_strain_identifiers: CIRM-BIA 659

ncbi_submitter: Brigham Young University


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium GW2011_GWA1_46_10


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhodocyclaceae bacterium


ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_assembly_name: Rumen uncultured genome RUG13868

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Niastella yeongjuensis

ncbi_submitter: Huzhong Agricultural University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gallintestinimicrobium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-239

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North West University


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Saudi Arabia: Jeddah

ncbi_isolation_source: Artificail sea water

ncbi_organism_name: Vibrio tritonius

ncbi_submitter: King Abdulaziz university


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: School of Life Sciences, Xiamen University


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: South China Agricultural University


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0120R


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Ares Genetics


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: NC

ncbi_isolation_source: environment

ncbi_submitter: FDA


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Acetobacter sp. DmW_125131

ncbi_submitter: Brigham Young University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: University of Alabama at Birmingham

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Stenotrophomonas;x__Stenotrophomonas maltophilia group;x__unclassified Stenotrophomonas maltophilia group;s__Stenotrophomonas maltophilia group sp. msm4


ncbi_organism_name: Streptomyces thermoviolaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Antarctica: Ace Lake; Vestfold Hills

ncbi_isolation_source: water

ncbi_organism_name: Synechococcus sp. SynAce01

ncbi_submitter: Peking University Shenzhen Graduate School


ncbi_country: USA: Massachusetts; Wareham

ncbi_isolation_source: berry surface

ncbi_organism_name: Pseudomonas sp. MWU318

ncbi_submitter: Midwestern University


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp P-30

ncbi_strain_identifiers: Hp P-30

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotellaceae bacterium UBA2749

ncbi_submitter: University of Queensland


ncbi_country: Mexico: Sinaloa; Escuinapa

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CIAD, A.C.


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA: OR

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: uncultured Syntrophobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_assembly_level: Chromosome

ncbi_isolation_source: clinical

ncbi_organism_name: Pseudomonas aeruginosa PA14

ncbi_submitter: Oklahoma State University


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: BAL

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parabacteroides johnsonii


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_organism_name: Muriicola sp.

ncbi_submitter: Rutgers University


ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_organism_name: Nocardioides sp. CPCC 206348

ncbi_submitter: Institute of Medicinal Biotechnology


ncbi_organism_name: Luteimonas dalianensis

ncbi_submitter: University of Hawaii at Manoa


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NHGRI/NIH


ncbi_country: Japan

ncbi_submitter: Yonsei University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Klebsiella pneumoniae UHKPC09

ncbi_submitter: JCVI


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urinary tract infection

ncbi_submitter: AstraZeneca


ncbi_organism_name: uncultured Cyclobacteriaceae bacterium


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Belgium: Ghent

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: ANIWHA


ncbi_country: India: Varanasi

ncbi_isolation_source: agricultural soil [ENVO:00002259]

ncbi_organism_name: Sphingobacterium sp. InxBP1

ncbi_submitter: Banaras Hindu University


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Spiribacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Meiothermus sp.

ncbi_submitter: International Centre for Terrestrial Antarctic Research, University of Waikato, New Zealand


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus sp. 2022WUSS083

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: United Kingdom

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Surrey


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Spain: Asturias

ncbi_organism_name: Brevibacterium sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ICMR-National Institute of Occupational Health


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Radboud University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: North Atlantic Ocean

ncbi_organism_name: Halomonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Washington


ncbi_assembly_name: freshwater MAG --- Loclat_bin-01155

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Pantoea eucalypti


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA6437

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6437


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Rumen uncultured genome RUG10040

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Helicobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Thermodesulfovibrionales bacterium


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_country: United Kingdom: Gloucestershire; Swellshill

ncbi_isolation_source: abdomen

ncbi_organism_name: Arsenophonus sp. aPb

ncbi_strain_identifiers: aPb

ncbi_submitter: University of Liverpool


ncbi_country: Austria

ncbi_isolation_source: raw milk

ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: University of Natural Resources and Life Sciences Vienna (Universitaet fuer Bodenkultur Wien)


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Mohammed Bin Rashid University of Medicine and Health Sciences


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CDC


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: India: Rajasthan

ncbi_isolation_source: Rhizopshere

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Birla Institute of Technology & Science


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: IHU Mediterranee Infection


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Herbaspirillum sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: USA: MI

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alphaproteobacteria bacterium UBA2966

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: roots

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Hunan Academy of Agricultural Science,


ncbi_country: USA: Ohio

ncbi_isolation_source: respiratory

ncbi_organism_name: Raoultella planticola

ncbi_submitter: JCVI


ncbi_submitter: Makerere University


ncbi_assembly_name: IMG-taxon 2675903008 annotated assembly

ncbi_organism_name: Streptomyces sp. 3213.3

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Gordonia sinesedis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: South Korea: Jeonju

ncbi_isolation_source: an LDPE film in soil

ncbi_organism_name: Nocardia sp. PE-7

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany: Hamburg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_country: USA

ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.


ncbi_country: South Africa

ncbi_isolation_source: tomato

ncbi_strain_identifiers: UPMP 1524

ncbi_submitter: University of Pretoria


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Monash University


ncbi_organism_name: Pseudokineococcus marinus


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Roseococcus sp. SDR

ncbi_strain_identifiers: SDR

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_country: Australia: Queensland

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_country: Germany: Cologne

ncbi_isolation_source: soil

ncbi_organism_name: Mycobacterium sp. Soil538

ncbi_submitter: ETH Zurich


ncbi_country: Australia

ncbi_isolation_source: Sparkling wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: IMG-taxon 2657245705 annotated assembly

ncbi_organism_name: Streptomyces sp. di50b

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: South Korea

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Korea Basic Science Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium angulatum

ncbi_submitter: EMG


ncbi_isolation_source: Faeces


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Micromonospora taraxaci

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: zhejiang sci-tech university


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Oregon

ncbi_organism_name: Rhizobium sp. L51/94

ncbi_submitter: Oregon State University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Canada: BC

ncbi_isolation_source: Urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Arctic Ocean: Arctic deep sea; Hakon Mosby Mud Volcano

ncbi_isolation_source: sediment

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium UBA647


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Oxalobacteraceae bacterium GrIS 1.11

ncbi_strain_identifiers: GrIS 1.11

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: KY

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University


ncbi_organism_name: Kitasatospora purpeofusca

ncbi_submitter: University of Bologna


ncbi_assembly_name: BSN53 Closure

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Siphonobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_assembly_name: Rumen uncultured genome RUG12851

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Suzhou

ncbi_organism_name: Caldifermentibacillus hisashii

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Azohydromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Australia: Sydney; NSW

ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Ureibacillus endophyticus

ncbi_submitter: Penn State


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow intestine

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Legionella bozemanae


ncbi_country: South Korea: East sea: Dokdo

ncbi_isolation_source: Seawater

ncbi_organism_name: Lacinutrix venerupis

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology


ncbi_organism_name: Mycoplasma leachii PG50

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma leachii;x__Mycoplasma leachii PG50


ncbi_submitter: University of Georgia


ncbi_organism_name: Salmonella sp. NW226

ncbi_submitter: Sichuan University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: EMG


ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University


ncbi_country: Argentina: Vila; Santa Fe

ncbi_isolation_source: first pond of the AUR serial dairy industry stabilization pond system

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: INTA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12440

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Xanthomonas dyei

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. NW919


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Aeromonas sp. 102P

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_submitter: National Institute of Health


ncbi_organism_name: uncultured Rhodovulum sp.


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Rhizobium sp. 11_C7_N12_5

ncbi_submitter: VIB


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pyruvatibacter mobilis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Thailand

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S082

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S082


ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_assembly_name: BSN04 Closure

ncbi_country: USA: Detroit; MI

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: New Jersy

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_organism_name: Escherichia coli KTE27

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: BGI


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Minnesota Duluth


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Blood Culture

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: SC


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: China: Qinghai Province

ncbi_isolation_source: soil

ncbi_organism_name: Planococcus liqunii

ncbi_submitter: China CDC


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-2637

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: BILS


ncbi_country: South Korea:Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_assembly_name: freshwater MAG --- AM_bin-4252

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Wenzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: wenzhou medical university


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_country: Egypt: Cairo

ncbi_organism_name: Staphylococcus sp. EG-SA-21

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Nesterenkonia jeotgali

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Henan

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: CANDO+P Bioreactor

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Northwestern University


ncbi_country: Kenya: Nairobi

ncbi_submitter: USAMRD-A


ncbi_country: Hungary: Bugyi

ncbi_isolation_source: enrichment culture AER3 inoculated with biofilm which develop in hydrocarbon contaminated groundwater; aerobic enrichment culture amended with 20 ppm diesel fuel/ crude oil mixture (3:2; v/v) as carbon and energy sources

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: Szent Istvan University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: HOSPITAL UNIVERSITARIO DONOSTIA


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Guadeloupe

ncbi_isolation_source: sugarcane

ncbi_organism_name: Xanthomonas sacchari

ncbi_strain_identifiers: LMG 476

ncbi_submitter: CIRAD


ncbi_country: Taiwan

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Xylanivirga thermophila

ncbi_strain_identifiers: SYSU GA17129

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_country: Kiribati: Kiritimati Atoll

ncbi_isolation_source: mineralizing microbial mat of hypersaline lake 21

ncbi_organism_name: Caldisalinibacter kiritimatiensis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Ireland

ncbi_organism_name: Brucella abortus I103_(UK3/01)

ncbi_submitter: Broad Institute


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Ponticaulis sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Germany: exploratory Schwaebische Alb

ncbi_isolation_source: grassland soil

ncbi_organism_name: Sphingopyxis granuli

ncbi_submitter: Exploratories for large-scale and long-term functional biodiversity research


ncbi_country: Norway: Bergen

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Shewanella sp. SG41-3

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Indian Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodohalobacter sp. SW132

ncbi_submitter: Institute of Microbiology


ncbi_assembly_name: Rumen uncultured genome RUG10241

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Seoul National University


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Paraburkholderia unamae

ncbi_submitter: The James Hutton Institute


ncbi_country: China: Yan an

ncbi_organism_name: Pararhizobium sp. BT-229

ncbi_submitter: Yan'an University


ncbi_country: USA: MD

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pendulispora rubella

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Agromyces aureus

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Actinomadura algeriensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: Moscow

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mariniphaga sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Malaysia

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Malaya


ncbi_isolation_source: Vegetable

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_isolation_source: closed biodigester

ncbi_organism_name: Ruminococcus sp. UBA1409

ncbi_submitter: University of Queensland


ncbi_country: Costa Rica: San Jose

ncbi_isolation_source: Stool from patient with antibiotic-associated diarrhea

ncbi_submitter: Universidad de Costa Rica


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFCSPLOWO2_02_FULL_48_12


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter sp. WU_MDCI_Abxa265

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Oregon

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolate: INDO1 L198

ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_strain_identifiers: INDO1 L198

ncbi_submitter: University of Vienna


ncbi_country: South Korea

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: University of Florida


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Antarctica:King George Island

ncbi_isolation_source: R2A medium

ncbi_organism_name: Kaistella flava (ex Peng et al. 2021)

ncbi_submitter: Wuhan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;x__Chryseobacterium group;g__Kaistella;s__Kaistella flava (ex Peng et al. 2021)


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter lactucae

ncbi_submitter: Broad Institute


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Denmark: Roskilde

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Region Zealand


ncbi_country: Italy

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Bacillus stercoris

ncbi_submitter: Salem Microbes Private Limited


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Streptomyces sp. NPDC047980

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paenibacillus sp. GCM10012304

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Caldilineaceae bacterium


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: University of Parma


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Salmonella sp. SJTUF15609

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Streptomyces rubiginosohelvolus


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Peptoniphilaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Haiti: Cholera Treatment Center; Gressier

ncbi_isolation_source: Stool; Clinical

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_assembly_name: freshwater MAG --- Umea_bin-04174

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Khyber Medical University, peshawar, KPK, Pakistan


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: SINTEF Industry


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Gordonia polyisoprenivorans

ncbi_submitter: The third institute of Oceanography


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lacipirellulaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas granadensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Ukraine: eastern Crimea

ncbi_isolation_source: bubbling pool in the central crater-like structure of an active mud volcano

ncbi_organism_name: Lutibacter sp.

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Guangzhou

ncbi_strain_identifiers: ST11 CRKP16

ncbi_submitter: PLA Southern Theater General Hospital


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli 2726800

ncbi_submitter: IGS


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii AB_TG2031

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: USA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: ABKVG

ncbi_submitter: NHGRI/NIH


ncbi_country: Ireland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: International Space Station

ncbi_organism_name: Sphingomonas sanguinis


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_country: Argentina: Hurlingham; Buenos Aires province

ncbi_isolation_source: Rectal swab of live bovine cattle

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Instituto Nacional de Tecnologia Agropecuaria


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_isolation_source: marine

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Microcoleus sp. A2-D3

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: reference map

ncbi_organism_name: Mycobacterium tuberculosis INS_XDR

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Jiangsu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Broad Institute


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Ectopseudomonas chengduensis

ncbi_submitter: University of Florence


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Desulfonema limicola

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Bradyrhizobium sp. RDI18

ncbi_submitter: Mohamed V university


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology Sydney


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: urine

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: China: East Mountain; Suzhou

ncbi_isolation_source: Bee food

ncbi_organism_name: Apilactobacillus kunkeei

ncbi_submitter: School of Biotechnology


ncbi_organism_name: Luteimonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: comammox bioreactor

ncbi_organism_name: Nitrospira sp. CR1.3

ncbi_submitter: IWWR, RADBOUD UNIVERSITY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR31202

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Oregon State University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Galactobacillus timonensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Serratia odorifera DSM 4582

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_country: China: Liaoning

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Czechoslovakia

ncbi_organism_name: Vibrio cholerae O37


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0112

ncbi_submitter: Broad Institute


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_submitter: BIOTEC


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter baumannii ABNIH7

ncbi_submitter: NISC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Shangrao Normal Unitversity


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Zurich


ncbi_organism_name: Pseudomonas fluorescens


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Salmonella sp. NW509

ncbi_submitter: Sichuan University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- LinL4_bin-0278

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Ohio

ncbi_isolation_source: sputum

ncbi_submitter: JCVI


ncbi_assembly_name: LM07-01337 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: University of Alabama Birmingham


ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Sweden: Lund

ncbi_isolation_source: blood

ncbi_organism_name: Aerococcus sp. Group 2

ncbi_submitter: Region Zealand

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus;x__Aerococcus incertae sedis;s__Aerococcus sp. Group 2


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Succinatimonas sp.


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Neisseriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: New York; NY

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MSKCC


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Blautia sp.


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 411

ncbi_organism_name: Staphylococcus succinus

ncbi_strain_identifiers: SNUC 1231

ncbi_submitter: University of Calgary


ncbi_country: USA: CA

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces parvus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Australia

ncbi_isolation_source: nitrophenolics and trichloroethylene contaminated ground water

ncbi_organism_name: Rhodococcus opacus

ncbi_submitter: University of Newcastle


ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Corynebacterium sp. HMSC30G07

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Poland

ncbi_isolation_source: rectal swab

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_submitter: NORHED grant


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: South Korea: Seoul

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei university college of medicine


ncbi_country: France: Caen

ncbi_isolation_source: Urines

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Normandy university


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 12 - depth 25m

ncbi_organism_name: SAR116 cluster bacterium REDSEA-S02_B12

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium REDSEA-S02_B12


ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_country: Japan: Tondabayashi

ncbi_isolation_source: laboratory experiment

ncbi_submitter: Osaka Ohtani University


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Bacteroides caccae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil

ncbi_isolation_source: kidney

ncbi_organism_name: Francisella orientalis

ncbi_submitter: Aquacen - National Reference Laboratory for Aquatic Animal Diseases, Brazilian Ministry of Fisheries and Aquaculture and Laboratory of Cellular and Molecular Genetics, Federal University of Minas Gerais


ncbi_country: Taiwan

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia;s__Paraburkholderia mimosarum;x__Paraburkholderia mimosarum LMG 23256 = NBRC 106338


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: Rumen uncultured genome RUG10220

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: EMG


ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Comamonas odontotermitis

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Planctomycetaceae bacterium UBA1669

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Atribacterota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;x__environmental samples;s__uncultured Atribacterota bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Bern


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Aeromonas sobria


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Geobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: Tanzania: Arusha National Park; Big Momela Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Limnospira indica BM01

ncbi_submitter: University of Dar es Salaam


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: Colombia: Medellin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: China: Guangdong; Yunfu

ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_country: Canada

ncbi_isolation_source: clinical

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_country: Germany

ncbi_isolate: DsemSym

ncbi_isolation_source: Beetle Malpighian tubules

ncbi_organism_name: Enterobacteriaceae endosymbiont of Donacia semicuprea

ncbi_strain_identifiers: DsemSym

ncbi_submitter: Johannes Gutenberg University Mainz


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_country: Thailand: Yala

ncbi_isolation_source: peat swamp soil

ncbi_organism_name: Actinacidiphila acidipaludis

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_organism_name: OM182 bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;s__OM182 bacterium


ncbi_isolation_source: Sputum

ncbi_organism_name: Tsukamurella tyrosinosolvens


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EBI


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Pseudomonas sp. KCJK8670

ncbi_submitter: University of Florida


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Desulfohalobiaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Paenibacillus typhae

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: Enterococcus sp. DIV1317a

ncbi_submitter: Broad Institute


ncbi_submitter: The University of Sydney


ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Georgia Tech


ncbi_country: Germany: Zoo Saarbruecken

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWA2_32_17

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWA2_32_17


ncbi_organism_name: Pseudomonas shahriarae

ncbi_submitter: Zhejiang Gongshang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_assembly_name: freshwater MAG --- Loclat_bin-09443

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Joint Microbiome Facility

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Negativicutes bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;x__environmental samples;s__uncultured Negativicutes bacterium


ncbi_country: USA: AZ

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Dolosigranulum pigrum

ncbi_submitter: Forsyth Institute


ncbi_assembly_name: Rumen uncultured genome RUG12486

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Citricoccus sp.

ncbi_submitter: Zhejiang University


ncbi_country: Brazil

ncbi_isolation_source: chicken carcass

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lautropia sp.


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-390-O04

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Anhui

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Klebsiella sp. JB_Kp023

ncbi_submitter: Max Rubner-Institut


ncbi_country: Netherlands

ncbi_organism_name: Enterococcus faecium EnGen0043

ncbi_submitter: Broad Institute


ncbi_organism_name: Nocardiopsis sp. NPDC006139

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_country: Portugal

ncbi_isolation_source: patient

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_country: Indonesia

ncbi_isolation_source: young leaves

ncbi_organism_name: Xanthomonas euvesicatoria pv. eucalypti

ncbi_strain_identifiers: BCC 975

ncbi_submitter: Univeristy of Florida


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: EPFL


ncbi_country: India: Madras

ncbi_organism_name: Vibrio cholerae MO10


ncbi_country: Finland

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Dahi fermented milk product

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Quaid-I-Azam University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: J. Craig Venter Institute


ncbi_country: United Kingdom: Yorkshire and the Humber

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: REHAB


ncbi_country: China: Beijing

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Capnocytophaga periodontitidis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: Helicobacter japonicus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Sea-surface microlayer

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Paenibacillus sp. FSL R7-0216

ncbi_submitter: Penn State


ncbi_organism_name: Conexibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: University of Oklahoma Health Sciences Center Medical Center

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Oregon Health and Science University


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: CNPSo 22

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_organism_name: Enterococcus faecalis EnGen0203

ncbi_submitter: Broad Institute


ncbi_country: Antarctica: James Ross Island; Crame Col

ncbi_isolation_source: surface soil

ncbi_organism_name: Hymenobacter terrestris

ncbi_submitter: Masaryk University


ncbi_isolation_source: hypersaline lakes

ncbi_organism_name: Vreelandella halophila

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: California

ncbi_isolation_source: respiratory secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CDPH


ncbi_country: Japan

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Nankai University


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_submitter: Cornell University


ncbi_country: USA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: AATYN

ncbi_submitter: NHGRI/NIH


ncbi_country: France: (59 department)

ncbi_isolation_source: Organ

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_submitter: Zhejiang university


ncbi_organism_name: Gallionella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Viet Nam

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mesocricetibacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Portugal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mali

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: SC

ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: CDC


ncbi_country: France: Savoy region

ncbi_isolation_source: Thermal spa water

ncbi_organism_name: Legionella gratiana

ncbi_submitter: Tel Aviv University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Bacillus paralicheniformis

ncbi_strain_identifiers: NVH 800

ncbi_submitter: NIZO food research


ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Nanjing

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_submitter: Makerere University


ncbi_isolation_source: poultry - laying hens

ncbi_submitter: ANSES


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Stanford University


ncbi_country: China

ncbi_organism_name: Actinomyces gaoshouyii

ncbi_submitter: China CDC