ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Nitrospirae bacterium GWC2_57_13

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium GWC2_57_13


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Flavobacterium aquidurense

ncbi_submitter: DOE Joint Genome Institute


gtdb_representative: f

ncbi_assembly_level: Chromosome

ncbi_country: Canada: BC

ncbi_isolation_source: Perirectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Rhodobiaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_level: Scaffold

ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: sludge

ncbi_organism_name: Paracoccus pantotrophus

ncbi_submitter: Nanjing University of Science and Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: France: Roscoff

ncbi_organism_name: Zobellia nedashkovskayae

ncbi_refseq_category: reference genome

ncbi_submitter: Station Biologique de Roscoff

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Streptococcus suis YS131

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_assembly_level: Complete Genome

ncbi_country: China: South China Sea

ncbi_isolation_source: Deep sea

ncbi_organism_name: Streptomyces sp. NHF165

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: USA: Beltsville; Maryland

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: China: Shandong province; Qingdao; Shandong University

ncbi_organism_name: Streptomyces sp. ML-6

ncbi_submitter: Shandong University


ncbi_country: Australia: Palm Island

ncbi_isolation_source: freshwater

ncbi_organism_name: Dolichospermum circinale CS-539

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Luteimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: freshwater MAG --- MJ110830A_bin-326

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Streptomyces nigra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: China: Fushun; Sichuan

ncbi_isolation_source: citrus

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: USA: Pittsburgh

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: Ohio

ncbi_isolation_source: WOUND/ABSCESS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella electrica

ncbi_submitter: University of Bern


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Neisseria sp. HMSC072F04

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Akkermansia sp.


ncbi_country: USA: Texas

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonas sp. JS425

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University Hospital of North Norway


ncbi_country: India

ncbi_isolation_source: Nosocomial

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Streptomyces sp. Root431

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Canada: Alberta

ncbi_isolation_source: Enterococcosel

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Cornell University


ncbi_organism_name: Thalassobius sp. MITS945101

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens


ncbi_country: United Kingdom

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_submitter: KEMRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Intestinibacter sp.


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Chloroflexaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Germany

ncbi_isolation_source: milk powder

ncbi_organism_name: Anoxybacillus flavithermus

ncbi_submitter: Technical University Munich


ncbi_country: China: Guigang City; Guangxi Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_organism_name: Streptomyces sp. NPDC030920

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Aeromicrobium sp. JJY06

ncbi_submitter: Korea Institute of Industrial Technology


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin70

ncbi_isolation_source: soil

ncbi_strain_identifiers: MSU bin70

ncbi_submitter: Monash University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella aerogenes UCI 45

ncbi_strain_identifiers: UCI 45

ncbi_submitter: Broad Institute


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: Bifidobacterium asteroides PRL2011

ncbi_submitter: University College Cork


ncbi_assembly_name: freshwater MAG --- E14_bin-1068

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Labilithrix sp.


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Rectal swab

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Pseudomonadales bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: AMSTERDAM UMC


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Pseudomonas paracarnis

ncbi_submitter: Universidad de Chile


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University


ncbi_submitter: Western University


ncbi_isolation_source: Clinical; respiratory sample

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA4239

ncbi_submitter: University of Queensland


ncbi_country: China: Beijing

ncbi_isolation_source: Tracheal lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: urine

ncbi_submitter: Roskilde University


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: IN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: human stool

ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Stanford University


ncbi_country: Lebanon

ncbi_submitter: LAU


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: feces

ncbi_submitter: Danone Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei;sb__Lacticaseibacillus paracasei subsp. paracasei;x__Lacticaseibacillus paracasei subsp. paracasei Lpp219


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_country: USA: CA

ncbi_isolation_source: Raw Goat Milk

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Bangladesh

ncbi_organism_name: Vibrio cholerae


ncbi_country: China: Ningbo City

ncbi_isolation_source: sediment

ncbi_organism_name: Frigidibacter sp. SD6-1

ncbi_submitter: Ningbo University


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acinetobacter baumannii MRY10-0558

ncbi_submitter: National Institute of Infectious Diseases, Japan


ncbi_country: Switzerland: Basel

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: ETH Zurich


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_submitter: University of Alberta


ncbi_assembly_name: Rumen uncultured genome RUG13777

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Massey University


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: sputum

ncbi_submitter: Pathogenomics Lab/LAU


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: Pseudomonas nitroreducens


ncbi_country: United Kingdom: Newcastle

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Connecticut

ncbi_isolation_source: Lung Tissue

ncbi_organism_name: Thiopseudomonas alkaliphila

ncbi_submitter: CDC


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: United Kingdom

ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: University of Southampton


ncbi_country: USA: IL

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Public Health Ontario


ncbi_country: Germany: Munster

ncbi_isolation_source: plant

ncbi_organism_name: Microbacterium sp. VKM Ac-2923

ncbi_strain_identifiers: VKM Ac-2923

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China

ncbi_submitter: Shandong University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: Faeces

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_isolation_source: duck cloacal

ncbi_organism_name: Salmonella enterica subsp. arizonae

ncbi_submitter: Sichuan Agricultural University


gtdb_type_species_of_genus: t

ncbi_organism_name: Parabacteroides distasonis ATCC 8503

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis ATCC 8503


ncbi_country: USA

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_country: France

ncbi_isolation_source: stool

ncbi_submitter: Anses


ncbi_country: China: Chifeng

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Flavobacterium sp. RSSB_23

ncbi_submitter: Hannam University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: France: Lille

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Russia: Saratov

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Switzerland: Lake Zurich; 5 m depth

ncbi_organism_name: Candidatus Nanopelagicus hibericus

ncbi_submitter: University of Zurich

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;s__Candidatus Nanopelagicus hibericus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;s__Candidatus Nanopelagicus hibericus


ncbi_assembly_name: Rumen uncultured genome RUG13381

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolate: Halomonas sp. I3

ncbi_organism_name: Halomonas sp. I3

ncbi_strain_identifiers: Halomonas sp. I3

ncbi_submitter: Station Biologique de Roscoff - Sorbonne Universite/CNRS


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Baileyella intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: University of California Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_assembly_name: IMG-taxon 2585428189 annotated assembly

ncbi_organism_name: Desulforamulus aeronauticus DSM 10349

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_assembly_name: freshwater MAG --- Day6-3_bin-224

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 8

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: University of East Anglia


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: Penn State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Slackia exigua

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Stony Brook University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: [Clostridium] viride DSM 6836

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;s__[Clostridium] viride;x__[Clostridium] viride DSM 6836


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Solibacillus sp. FSL K6-4121

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Solibacillus;x__unclassified Solibacillus;s__Solibacillus sp. FSL K6-4121


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_country: Pakistan

ncbi_organism_name: Shigella sonnei

ncbi_submitter: FDA


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Roskilde University


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Mesorhizobium sp. M0488

ncbi_submitter: Washington State University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Ja1-D5_bin-456

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_country: Canada: Lacombe

ncbi_submitter: AAFC


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium CG_4_9_14_0_2_um_filter_43_12


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Veillonella atypica

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Syntrophobacterales bacterium


ncbi_country: USA: MD

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: US Food and Drug Administration


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_organism_name: uncultured bacterium


ncbi_country: Uruguay: Flores

ncbi_isolation_source: lungs; pleura

ncbi_submitter: Institut Pasteur de Montevideo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: University of California, Berkeley


ncbi_assembly_name: Rumen uncultured genome RUG670

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: San Diego County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Argentina: Buenos Aires; San Andres; Hospital Zonal General de Agudos  General Manuel Belgrano ; Zip B1604BSB

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China

ncbi_isolation_source: marine sediment

ncbi_organism_name: Paracoccus sp. Z118

ncbi_submitter: Shandong University at Weihai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. Z118


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Chile: Santiago

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: China: Nanping City; Fujian Province

ncbi_isolation_source: stool

ncbi_submitter: South China Agricultural University


ncbi_country: Lithuania

ncbi_isolation_source: RTE salad mixes

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_isolation_source: fermentation

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG367

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Micromonospora parva

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: China: Shanghai

ncbi_isolation_source: Human stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: China CDC


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. F19

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. F19


ncbi_country: USA: Cleveland

ncbi_isolation_source: urine

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acholeplasmataceae bacterium


ncbi_organism_name: Microcystis aeruginosa LE3

ncbi_submitter: Old Dominion University


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Empedobacter sp. GD03739

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:43

ncbi_submitter: DTU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Corynebacterium ulcerans BR-AD22

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_country: Switzerland

ncbi_isolation_source: Emmental

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_organism_name: Phototrophicales bacterium

ncbi_submitter: University of California Davis


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Chitinophaga sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Synergistaceae bacterium UBA6804

ncbi_submitter: University of Queensland


ncbi_country: Denmark

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_country: USA: MS

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Transconjugant 14A

ncbi_submitter: Univ Mississippi Medical Center


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_isolation_source: Shrimps

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Ocean University


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: uncultured Nannocystaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Candidatus Cryptobacteroides bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides bacterium


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Rufibacter quisquiliarum

ncbi_strain_identifiers: NCAIM B.02614

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinshan District Center for Disease Control and Prevention


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: Glutamicibacter sp. NPDC058337

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: AOP24_B1_coeur _bin _7

ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: AOP24_B1_coeur _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: AOP24_C2_surf _bin _17

ncbi_organism_name: Alcaligenes aquatilis

ncbi_strain_identifiers: AOP24_C2_surf _bin _17


ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Universidad de Leon


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Comamonas trifloxystrobinivorans


ncbi_organism_name: Candidatus Saccharimonas sp.

ncbi_submitter: Hospital Sirio-Libanes

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__unclassified Candidatus Saccharimonas;s__Candidatus Saccharimonas sp.


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Germany: Dresden; Ockerwitz

ncbi_isolation_source: arable land

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: BTU Cottbus-Senftenberg, Institute of Biotechnology


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-275

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Anaerolineales bacterium

ncbi_strain_identifiers: new MAG-275

ncbi_submitter: Micoorganism


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7186

ncbi_submitter: University of Queensland


ncbi_isolation_source: Soil

ncbi_submitter: MASSEY UNIVERSITY


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: rumen

ncbi_organism_name: Candidatus Avelusimicrobium ruminicola


ncbi_organism_name: Olsenella uli

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_organism_name: Cedecea sp. VD19

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Streptococcus gallolyticus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Polystyrene-feeding group superworm feces

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: The University of Queensland


ncbi_isolate: LWB

ncbi_organism_name: Lettuce witches'-broom phytoplasma

ncbi_strain_identifiers: LWB

ncbi_submitter: Instituto de Patologia Vegetal CIAP-INTA


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: China: Tianjin

ncbi_isolation_source: herbs sample

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: Tianjin University of Traditional Chinese Medicine


ncbi_country: USA: SC

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter hepaticus


ncbi_isolation_source: Caecum

ncbi_organism_name: Turicimonas muris


ncbi_country: Mexico: CDMX

ncbi_isolation_source: Anal fistula

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: InDRE


ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. lachrymans;x__Pseudomonas amygdali pv. lachrymans str. M301315


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Lachnospiraceae bacterium HCP1S3_D5

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aarhus University


ncbi_country: USA: Pennsylvania; Centralia

ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Michigan State University


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China:Inner Mongolia

ncbi_isolation_source: Saline soil

ncbi_organism_name: Halomonas sp. LR3S48

ncbi_submitter: Inner Mongolia university


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: Environmental; soil

ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Spain

ncbi_organism_name: Halarcobacter bivalviorum

ncbi_submitter: Universitat Rovira i Virgili


ncbi_country: Czech Republic

ncbi_organism_name: Escherichia coli

ncbi_submitter: Masaryk University


ncbi_country: Argentina: Neuquen

ncbi_isolation_source: Vertiente Agrio 2

ncbi_organism_name: Igneacidithiobacillus copahuensis

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Pocheon

ncbi_isolation_source: ginseng cultivating soil

ncbi_organism_name: Arachidicoccus ginsenosidivorans

ncbi_strain_identifiers: Gsoil 809

ncbi_submitter: Hankyong National University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: Nigeria: Lagos

ncbi_organism_name: Serratia marcescens

ncbi_submitter: UNIVERSITY OF LAGOS


ncbi_country: Spain: Mallorca

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: University of Balearic Islands


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: AAFC


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Rhodothermaeota bacterium MED-G18

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;x__unclassified Rhodothermota;s__Rhodothermaeota bacterium MED-G18


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia


ncbi_isolation_source: bovine feces

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: World Institute of Kimchi


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Russia: Rostov-on-Don

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Research Institute for Plague Control


ncbi_country: China: Nanchang

ncbi_isolation_source: rectal swab from healthy participants

ncbi_submitter: beijing


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: Switzerland

ncbi_isolation_source: host nose

ncbi_organism_name: Macrococcoides bohemicum

ncbi_submitter: University of Bern


ncbi_country: USA: OH

ncbi_isolation_source: throat swab

ncbi_organism_name: Mycoplasmoides pneumoniae 19294

ncbi_submitter: University of Alabama at Birmingham


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus columbae;x__Enterococcus columbae DSM 7374 = ATCC 51263


ncbi_country: India

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: San Diego

ncbi_organism_name: Mesorhizobium sp. RMAD-H1

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Korea: Seoul

ncbi_isolation_source: sunki; Japanese traditional fermented vegetable

ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii

ncbi_submitter: ChunLab, Inc


ncbi_isolation_source: human gut

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus gallolyticus

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Bradyrhizobium sacchari


ncbi_organism_name: Yersinia aldovae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: fecal sample

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_country: China: Qinghai; Keluke Lake

ncbi_isolation_source: sediments

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_isolation_source: Poultry faeces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Lactococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_organism_name: Eubacterium sp. AF15-50

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. AF15-50


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V18_P1S4T112

ncbi_submitter: Instituto de ecologia


ncbi_country: China: Jing Zi Habour; Weihai

ncbi_organism_name: Glutamicibacter soli

ncbi_submitter: Shandong University at Weihai


ncbi_assembly_name: Rumen uncultured genome RUG10999

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Infant feces

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Korea University


ncbi_organism_name: Albidovulum sp.

ncbi_submitter: Radboud University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Cellulosilyticum sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Achromobacter sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: bacterium ADurb.Bin212

ncbi_submitter: University of Illinois


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Dialister sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M0238

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- VK4_bin-0963

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: biofilm from deap sea brine pool

ncbi_organism_name: Fidelibacterota bacterium TCS56

ncbi_submitter: Hong Kong University of Science And Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium TCS56


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: China: Jiangsu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: decomposition metagenome

ncbi_organism_name: Candidatus Kaistia colombiensis

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_submitter: Center for Microbial Communities


ncbi_country: Ghana: Tamale

ncbi_isolation_source: beef

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Nanyang Technological University


ncbi_assembly_name: Csak35 final contigs

ncbi_country: Israel

ncbi_organism_name: Cronobacter sakazakii ES35

ncbi_submitter: Cronobacter sakazakii Genome Sequencing Consortium


ncbi_organism_name: Thomasclavelia cocleata


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Canada: Lacombe

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nagoya University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:b:-


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS Mineral Grit embedded in adhesive paper 3 environmental surface

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: SC


ncbi_strain_identifiers: DECR 6

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Bergeyella sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus aureus W80042

ncbi_submitter: Broad Institute


ncbi_country: Czech Republic

ncbi_isolation_source: peloid bath at spa

ncbi_organism_name: Aquitalea pelogenes

ncbi_submitter: Masaryk University


ncbi_assembly_name: IMG-taxon 2616644818 annotated assembly

ncbi_organism_name: Alkalibacterium subtropicum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Italy: Naples; Campi Flegrei; Pisciarelli hydrothermal system

ncbi_isolation_source: acidic hydrothermal system

ncbi_organism_name: Alicyclobacillaceae bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Christensenellaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10285

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hartford


ncbi_country: Italy: Bologna

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: Spain: Motri; Granada

ncbi_organism_name: Psychrobacter sp. M9-54-1

ncbi_submitter: University of Granada


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Iran: Khaygen River

ncbi_isolation_source: sediments of water samples collected from a contaminated (highly Industrialised) site in the Khaygen River

ncbi_organism_name: Pseudomonas sp. D1HM

ncbi_submitter: Technical University of Denmark


ncbi_country: Peru: Lima

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: SRI PCM FMBA of Russia


ncbi_country: Kazakhstan: Astana

ncbi_isolation_source: Sputum collection

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center for Biotechnology


ncbi_country: USA: San Diego County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_country: Russia: Tersko-Sunzha low-mountain plague focus

ncbi_isolation_source: burrowing fleas of Citellus pygmaeus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: RARI


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: food

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Dysosmobacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Monash University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Longicatena sp. 210702-DFI.1.160

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Saccharicrinis sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Clostridiales bacterium UBA1246


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 1-110-08_S1_C2

ncbi_submitter: IGS


ncbi_organism_name: Acutalibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: Stool

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: California; Eel River; Cedar Creek

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_05_CCC_O_A

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Sutterella sp.

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Fibrobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Cambridge; Massachusetts

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: UCSF


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China

ncbi_isolation_source: river water from subtropical stream

ncbi_organism_name: Rugamonas brunnea

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: forest soil communities across North America

ncbi_organism_name: Streptomyces bottropensis ATCC 25435

ncbi_submitter: JGI


ncbi_country: USA

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_submitter: ncipd


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Bosea sp. Root483D1

ncbi_submitter: Max Planck Institute for Plant Breeding Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. Root483D1


ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Paenibacillus faecalis

ncbi_submitter: URMITE


ncbi_country: Spain: Seville

ncbi_isolation_source: Rhizo- sphere soil samples collected in an organic olive grove located at Mairena del Aljarafe (Sevilla)

ncbi_organism_name: Pseudomonas granadensis

ncbi_submitter: Newcastle University


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: McGill University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudarthrobacter sp. NPDC092401

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Hungary: Szeged wastewater treatment plant

ncbi_isolation_source: Anaerobic sludge from Szeged Municipal wastewater plant s biogas plant Biogas Plant

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Shewanella algae

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Xanthomonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Milan


ncbi_organism_name: Aquabacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_assembly_name: Rumen uncultured genome RUG12612

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_isolate: AOP43_C2_surf _bin _27

ncbi_organism_name: Psychrobacter celer

ncbi_strain_identifiers: AOP43_C2_surf _bin _27

ncbi_submitter: Genoscope


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Caseous lymphadenitis neck abscess

ncbi_submitter: Rede Paraense de Genômica e Proteômica


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: uncultured Armatimonadales bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: bronch wash cf

ncbi_organism_name: Rothia sp. HMSC036D11

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC036D11


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: Dry power from Type Strain Preservation Center

ncbi_organism_name: Pseudochrobactrum kiredjianiae

ncbi_submitter: Sichuan University


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Rothia mucilaginosa


ncbi_submitter: Institut de Biologie Integrative et des Systemes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mississippi


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Glaciecola sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1058

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Microbacterium sp. UBA6633

ncbi_submitter: University of Queensland


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Oceanobacillus profundus

ncbi_strain_identifiers: MER TA 139-2

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_country: China: Shandong

ncbi_isolation_source: commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes;s__Anaerostipes hominis (ex Lee et al. 2021)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Japan

ncbi_isolation_source: feces of thoroughbred horse

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus hayakitensis;x__Ligilactobacillus hayakitensis DSM 18933 = JCM 14209


ncbi_country: Canada: Montreal

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Kenya

ncbi_organism_name: Alphaproteobacteria bacterium UBA5885


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolate: AOP34_BR2_surf _bin _24

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP34_BR2_surf _bin _24

ncbi_submitter: Genoscope


ncbi_organism_name: Vulcanimicrobium alpinum

ncbi_submitter: Kennan Eisei Kogyo, Co., Ltd.


ncbi_country: United Kingdom: Leicester

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Acidaminococcus fermentans DSM 20731

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_country: Australia: Bundaberg

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: La Trobe University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto de Biomedicina de Sevilla (IBIS)


ncbi_isolation_source: metal/plastic

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of Queensland


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Anaerobutyricum sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Kaistella sp.


ncbi_organism_name: Mycoplasma sp. 480

ncbi_submitter: Institute of Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__unclassified Asterococcus (in: mycoplasmas, genus);s__Mycoplasma sp. 480


ncbi_country: China: Shan Dong

ncbi_isolation_source: Insect faeces

ncbi_organism_name: Pseudomonas sp. SD17-1

ncbi_submitter: Academy of National Food and Stragetic Reserves Administration


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Netherlands: Flevoland

ncbi_isolation_source: Wheat rhizosphere

ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: Utrecht University, Utrecht, NETHERLANDS


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Bdellovibrio sp. GT3

ncbi_submitter: University of Guelph


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Portland State University


ncbi_country: South Africa: Mafikeng; Mafikeng Provincial Hospital

ncbi_isolation_source: diarrhea sample from child under the age of five

ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: North-west University


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC056230

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom: London

ncbi_isolation_source: Cough Swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_country: Qatar

ncbi_isolation_source: Retail Chicken Carcasse

ncbi_submitter: Qatar University


ncbi_organism_name: Streptococcus suivaginalis

ncbi_submitter: USDA-ARS


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_isolation_source: garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: University of Fribourg


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: CA

ncbi_isolation_source: rectum(Gazella cuvieri)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: WA

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002061


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Flavonifractor sp. HCP28S3_F3

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Candidatus Sericytochromatia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__unclassified Candidatus Sericytochromatia;s__Candidatus Sericytochromatia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: SPRUCE 97

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 97

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC012466


ncbi_organism_name: Escherichia coli O111:H8

ncbi_submitter: United State Department of Agriculture


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Candidatus Arcticimaribacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Arcticimaribacter;x__unclassified Candidatus Arcticimaribacter;s__Candidatus Arcticimaribacter sp.


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: October University for Modern Sciences and Arts


ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Pantoea sp.

ncbi_submitter: EMG


ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: Haruko Takeyama Lab., Waseda University


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: INRAE/CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Corynebacterium mucifaciens

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1241

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiphilium multivorum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of York


ncbi_assembly_name: freshwater MAG --- MJ130702B_bin-537

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: Faeces


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Wenzhou-Kean University: Kean University - Wenzhou Campus


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Spain

ncbi_isolation_source: urine

ncbi_submitter: CHU A Coruna


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China:Nagqu city; Tibet autonomous region

ncbi_organism_name: Lactococcus sp. dk310

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: forest soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Stenotrophomonas sp. CFBP8994

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Escherichia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alicyclobacillus dauci

ncbi_submitter: Northwest A&F University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus HIF003_B2N-C

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolate: metabat2_6755_HET_CTRL_hifiasm.247 MAG

ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_strain_identifiers: metabat2_6755_HET_CTRL_hifiasm.247 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: United Kingdom: Wirral; Neston

ncbi_isolation_source: Light trap collection of Culicoides biting midges

ncbi_organism_name: Rickettsia endosymbiont of Culicoides newsteadi

ncbi_strain_identifiers: RiCNE

ncbi_submitter: University of Liverpool


ncbi_country: Ghana

ncbi_isolation_source: fish

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Calgary


ncbi_assembly_name: Rumen uncultured genome RUG13623

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Magnetic Island; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Saint Kitts and Nevis:Basseterre

ncbi_isolation_source: blood

ncbi_organism_name: Leptospira interrogans serovar Copenhageni

ncbi_submitter: INDICASAT AIP


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: South Korea: Wanju

ncbi_isolation_source: rhizosphere soil of tomato plants

ncbi_organism_name: Paenibacillus rhizovicinus

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli T1840_97

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Parafannyhessea umbonata

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroides sp. NGMCC 1.200775

ncbi_submitter: Institute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;x__unclassified Bacteroides;s__Bacteroides sp. NGMCC 1.200775


ncbi_country: Egypt

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus avium

ncbi_submitter: Faculty of Pharmacy, Cairo University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wyoming


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Zurich


ncbi_assembly_name: Staphylococcus aureus SA9-LAU WGS

ncbi_country: Jordan: Amman

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus SA9-LAU

ncbi_submitter: Lebanese American University


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_assembly_name: freshwater MAG --- LJ_bin-4385

ncbi_submitter: BILS


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Djibouti

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Danish Technical University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_41_53


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_isolation_source: brain

ncbi_submitter: Sichuan University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA

ncbi_isolation_source: Bronchoalveolar lavage (BAL)

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S037_25249

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: uncultured Nitrosomonas sp.

ncbi_submitter: Lund University


ncbi_country: Mexico

ncbi_isolation_source: Eggs

ncbi_organism_name: Ochrobactrum sp. S45

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Neglectibacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Davies Reef


ncbi_country: Thailand

ncbi_isolation_source: Island

ncbi_organism_name: Kineosporia corallincola

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Erysipelotrichaceae bacterium


ncbi_isolation_source: BLOOD


ncbi_organism_name: Zoogloea sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_assembly_name: Salmonella enterica CVM N30701-SQ v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona