ncbi_country: Germany

ncbi_isolation_source: waste water

ncbi_organism_name: Hydrogenophaga intermedia

ncbi_submitter: Hankyong National University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Scaffold

ncbi_isolation_source: feces

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_organism_name: Bacillus cereus Rock3-29

ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus Rock3-29


gtdb_representative: t

ncbi_country: Pacific Ocean

ncbi_isolation_source: basaltic crustal fluids

ncbi_submitter: University of Hawaii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium JdFR-50


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Austria

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_submitter: Azienda Sanitaria dell'Alto Adige


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Zimbabwe

ncbi_isolation_source: ticks from Ovis aries

ncbi_organism_name: Ehrlichia ruminantium

ncbi_strain_identifiers: Palm River

ncbi_submitter: cBio Corp


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Japan

ncbi_submitter: U.S. Food and Drug Administration


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Caulobacteraceae bacterium UBA3608

ncbi_submitter: University of Queensland


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: India: Aurangabad

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Miyazaki


ncbi_organism_name: Candidatus Sedimenticola endophacoides

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Ignavibacteria bacterium UBA2408

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium UBA2408


ncbi_assembly_name: SPADES assembly of Enterobacter cloacae NDC

ncbi_country: USA

ncbi_isolation_source: tissues

ncbi_strain_identifiers: NDC

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Bradyrhizobium sp. LA6.3


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Sanya people's hospital


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Actinotignum sp. GS-2025a

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Candidatus Onthocola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Onthocola;x__unclassified Candidatus Onthocola;s__Candidatus Onthocola sp.


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Italy: Naples; Campi Flegrei; Solfatara hydrothermal system

ncbi_isolation_source: acidic hydrothermal system

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: India

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EBI


ncbi_country: Pacific Ocean: near Hawaii

ncbi_isolation_source: sea water

ncbi_organism_name: Alcanivorax sp. HI0007

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


gtdb_type_species_of_genus: t

ncbi_assembly_level: Complete Genome

ncbi_organism_name: Thermosulfidibacter takaii ABI70S6

ncbi_refseq_category: reference genome

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Rio de Janeiro

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Streptomyces sp. NPDC013099

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Flavicella sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Ngtc RS 12

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Zhejiang University


ncbi_country: Kenya: Kilifi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_assembly_name: Rumen uncultured genome RUG13943

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Rhizobium sp. Root149

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: MRSN BI Team


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Texas

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: India: Bidar town; Bidar taluk and district; Karnataka

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Neptunomonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ireland

ncbi_isolation_source: skim milk powder (medium heat)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Teagasc Agriculture and Food Development Authority


ncbi_country: Germany: Munster

ncbi_organism_name: Dolosigranulum pigrum

ncbi_submitter: Statens Serum Institut


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. M-M48

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Gracilibacillus sp. JCM 18860

ncbi_submitter: The University of Tokyo


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium rhizoryzae

ncbi_submitter: Kyungpook National University


ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: University Hospital Tuebingen


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_isolation_source: Sediment

ncbi_submitter: MASSEY UNIVERSITY


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine environment

ncbi_organism_name: Synechococcus sp. A15-60

ncbi_submitter: Station Biologique de Roscoff (CNRS - Sorbonne University)


ncbi_country: Czech Republic

ncbi_isolate: Bordetella pertussis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_strain_identifiers: Bordetella pertussis;VS67

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences, v.v.i.


ncbi_strain_identifiers: GL2 Eco

ncbi_submitter: University of Bucharest


ncbi_country: China: Shanghai

ncbi_isolation_source: pig manure

ncbi_submitter: Yangzhou University


ncbi_assembly_name: freshwater MAG --- AM1_bin-0975

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Curvibacter sp.

ncbi_submitter: BILS


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Mt Mary; Victoria

ncbi_isolation_source: wine

ncbi_organism_name: Oenococcus oeni AWRIB568

ncbi_submitter: The Australian Wine Research Institute


ncbi_organism_name: Mammaliicoccus sp. C-M13

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-0954

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__environmental samples;s__uncultured Candidatus Peregrinibacteria bacterium


ncbi_organism_name: Lactococcus formosensis subsp. formosensis

ncbi_submitter: The University of Hong Kong


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: Peadiatric - unoccupied bed

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: South Africa: Vryburg

ncbi_isolation_source: Soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: North-West University, South Africa


ncbi_country: India: Puttaparthi; Urology Ward

ncbi_isolation_source: Midstream urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sri Sathya Sai Institute of Higher Learning


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus H71785

ncbi_submitter: Broad Institute


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: EPFL


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia glucerasea

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: University of Edinburgh


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bicetre hospital


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R109;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptacidiphilus carbonis

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Adlercreutzia equolifaciens


ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Enterobacter hormaechei ATCC 49162

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hormaechei;x__Enterobacter hormaechei ATCC 49162


ncbi_organism_name: Enterococcus sp. E5-103

ncbi_submitter: Institute of Marine Research


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Barnesiella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Germany

ncbi_isolation_source: joint

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Rumen uncultured genome RUG069

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Roseibium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolate: AOP30_C2_surf _bin _24

ncbi_organism_name: Pseudoalteromonas nigrifaciens

ncbi_strain_identifiers: AOP30_C2_surf _bin _24

ncbi_submitter: Genoscope


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Enterococcus sp.

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolate: AOP4_B2_surf _bin _3

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP4_B2_surf _bin _3


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolate: Proteobacteria sp. RBC052

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_strain_identifiers: Proteobacteria sp. RBC052

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 278

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces yangpuensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Thiodiazotropha lotti

ncbi_submitter: University of Vienna


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Aureimonas sp. AU22

ncbi_submitter: Graduate School of Life Sciences, Tohoku University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Pantoea sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: China

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED17

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED17


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Treponema sp. UBA4692

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shenyang

ncbi_isolation_source: sausage

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cutibacterium avidum


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: South Korea: Cheongwon

ncbi_isolation_source: rhizosphere soil of field-grown rice

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chungbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Richelia sp. SM1_7_0

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: Actinoalloteichus caeruleus

ncbi_strain_identifiers: NRRL ISP-5103

ncbi_submitter: University of Illinois


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_country: Japan: Kamaishi

ncbi_isolation_source: Coastal seawater

ncbi_organism_name: Vibrio diabolicus

ncbi_strain_identifiers: CAIM 1802

ncbi_submitter: CIAD, A.C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: South Korea:Wan-Do

ncbi_organism_name: Shewanella sp. OMA3-2

ncbi_submitter: National Institute of Fisheries Science


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Azospirillum rugosum

ncbi_strain_identifiers: IMMIB AFH-6

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Campylobacter coli CVM N7464 v1.0

ncbi_country: USA: CO

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: CVM N7464

ncbi_submitter: FDA


ncbi_country: Italy:Apulia; Bari

ncbi_isolation_source: biosafety cabinet

ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: university of milan


ncbi_country: Japan: coast of Ishigaki island; Okinawa

ncbi_isolation_source: sediment

ncbi_organism_name: Altererythrobacter ishigakiensis

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Sphingomonas sp. CFBP 13603

ncbi_submitter: INRAE


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: Thailand: Hat Yai City; Songkhla province

ncbi_isolation_source: environmental

ncbi_submitter: National University of Singapore and Genome Institute of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Altona


ncbi_country: China: Shanghai

ncbi_isolation_source: lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Chinese Academy of Agricultural Science


ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces griseoloalbus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: clitoris

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_strain_identifiers: CNCI 146

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: WHRI 7004

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: pharyngeal pseudomembrane

ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_isolation_source: bioreactor

ncbi_organism_name: Fervidobacterium sp. UBA5816

ncbi_submitter: University of Queensland


ncbi_country: Spain: Santander

ncbi_isolation_source: itra-abdominal tract infection

ncbi_submitter: AstraZeneca


ncbi_country: Finland

ncbi_isolation_source: faeces

ncbi_organism_name: Yersinia kristensenii

ncbi_submitter: SC


ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Thomasclavelia ramosa DSM 1402

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces griseoruber

ncbi_submitter: Bielefeld University


ncbi_organism_name: Dietzia maris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium marinum

ncbi_strain_identifiers: ATCC 927

ncbi_submitter: DisRupt


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella quasivariicola

ncbi_submitter: Hangzhou Medical University


ncbi_country: USA: Blacksberg; Virginia

ncbi_isolation_source: human oral cavity

ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: The Forsyth Institute


ncbi_country: USA

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Baylor College of Medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient7 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD15974

ncbi_submitter: Broad Institute


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_isolation_source: casein fouling sample from a dairy factory

ncbi_submitter: CMBI


ncbi_country: India: Karnataka

ncbi_isolate: Hsal

ncbi_organism_name: Candidatus Tokpelaia hoelldobleri

ncbi_strain_identifiers: Hsal

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;x__Hyphomicrobiales incertae sedis;g__Candidatus Tokpelaia;s__Candidatus Tokpelaia hoelldobleri


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Candidatus Apopatosoma intestinale

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Apopatosoma;s__Candidatus Apopatosoma intestinale


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Streptomyces sp. NPDC056909

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Corynebacterium mucifaciens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Streptomyces sp. NPDC090442


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Alistipes indistinctus


ncbi_organism_name: Agrobacterium cavarae

ncbi_submitter: Academia Sinica


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_organism_name: Brevibacillus agri


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: sand filter of a drinking water treatment system

ncbi_organism_name: Blastocatellia bacterium UBA7656

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_country: Hong Kong: Pokfulam

ncbi_isolation_source: freshwater stream

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: China: Hubei

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wuhan CDC


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Tech


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_submitter: Universidad Miguel Hernandez


ncbi_organism_name: Methylosinus sp. PW1


ncbi_country: India: Pichavaram

ncbi_organism_name: Streptomyces moderatus

ncbi_submitter: BHARATHIDASAN UNIVERSITY


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SCOPE


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Colombia: Tolima

ncbi_isolation_source: TOLIMA

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Group of Cytogenetics, Phylogeny and Population Evolution, University of Tolima


ncbi_country: Brazil

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Industrial cooling tower

ncbi_organism_name: Legionella oakridgensis

ncbi_strain_identifiers: Oak Ridge-10

ncbi_submitter: Tel Aviv University


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Universiteit Antwerpen


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Actinomyces sp.

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Pfizer


ncbi_country: USA: MS

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Transconjugant 23A

ncbi_submitter: Univ Mississippi Medical Center


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Weeksellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Spain

ncbi_organism_name: Enterobacter hormaechei subsp. oharae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. oharae


ncbi_assembly_name: Rumen uncultured genome RUG14067

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus italicus


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Competibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;x__unclassified Candidatus Competibacter;s__Candidatus Competibacter sp.


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: USA

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter coli

ncbi_submitter: FDA


ncbi_organism_name: Thiotrichaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Mammaliicoccus lentus

ncbi_strain_identifiers: Ngtc NS 7

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: China: Beibu Gulf; Guangxi Province

ncbi_isolation_source: coral

ncbi_organism_name: Streptomyces sp. PKU-MA01144

ncbi_submitter: Peking University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Campylobacter avium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Switzerland

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: wound abdominal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Shigella flexneri K-315

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Other

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_assembly_name: freshwater MAG --- A14_bin-2529

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 2821

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Australia: Surat Basin; Queensland

ncbi_isolation_source: Filtered formation waters collected from the Coxon Creek 10 (CX-10) coalbed methane well

ncbi_organism_name: Methylophilaceae bacterium UBA7525

ncbi_submitter: University of Queensland


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli


ncbi_organism_name: Subtercola sp. Z020

ncbi_submitter: Oregon State University


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB243_498L10

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Water column of Lake Zurich; Switzerland

ncbi_organism_name: Candidatus Methylopumilus planktonicus

ncbi_submitter: Biology Centre CAS, Institute of Hydrobiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sapienza University


ncbi_country: China: Shandong province

ncbi_organism_name: Streptococcus pluranimalium

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Conchiformibius steedae DSM 2580

ncbi_submitter: University of Vienna


ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_submitter: Washington University


ncbi_country: China: Hangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Streptomyces sp. NBC_01751

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8938

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: China: Hong Kong

ncbi_isolation_source: environmental swab (area2: window bench)

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: W

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany: Aachen

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Department of Medical Microbiology and Hospital Hygiene, University Hospital Rostock, Germany


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Tennessee

ncbi_isolation_source: Rectal

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: USA: WI

ncbi_isolation_source: liver

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Zhejiang

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Paraguay: Coronel Oviedo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: China:Guangdong; Shenzhen

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Shandong University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_organism_name: Levilactobacillus suantsaii

ncbi_submitter: FIRDI


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Tsinghua University


ncbi_submitter: Guangxi Medical University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Bacteroides sp. 43_46


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: IMG-taxon 2568526012 annotated assembly

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Fructilactobacillus;s__Fructilactobacillus lindneri;x__Fructilactobacillus lindneri DSM 20690 = JCM 11027


ncbi_country: China: SiChuan

ncbi_isolation_source: pig farm

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_organism_name: Mycobacterium bourgelatii

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_country: Canada: Alberta

ncbi_isolation_source: Tissue ample

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_country: Russia: West Siberia; Nadym region

ncbi_isolation_source: forested tundra soil

ncbi_organism_name: Granulicella sibirica

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Algibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium GW2011_GWA1_43_15


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Clathrolucina costata


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: Shanghai Institute of Material Medica, Chinese Academy of Sciences


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Segatella copri


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Ondokuz Mayis University, Faculty of Veterinary Medicine


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: EMG


ncbi_organism_name: Parabacteroides massiliensis

ncbi_submitter: UIUC


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_strain_identifiers: 24f autumn

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Salmonella sp. NW137

ncbi_submitter: Sichuan University


ncbi_organism_name: Bdellovibrionia bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Mississippi State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Limosilactobacillus reuteri MM2-3

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: Soil; Residential Rain Drainage Channel

ncbi_organism_name: Pseudomonas alkylphenolica

ncbi_strain_identifiers: Neo

ncbi_submitter: Cal State San Bernardino


ncbi_organism_name: Marinirhabdus gelatinilytica

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Mexico: Navolato; Sinaloa

ncbi_isolation_source: Culiacan River; El Castillo

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_isolation_source: Ocean

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Ocean university of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Isolate 2

ncbi_submitter: University of Siena


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: South Korea

ncbi_isolation_source: tongue coating

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: DOCSMEDI Co., Ltd.


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_country: USA:New York Wayne

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Kordiimonadaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 30 days

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Shantou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: stool

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Propionibacteriaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Lilbub from private home

ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: AnimalBiome


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: EMG


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces albofaciens JCM 4342

ncbi_submitter: KAIST


ncbi_organism_name: Aeromonas salmonicida subsp. achromogenes

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Neglectibacter sp.

ncbi_submitter: The University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: OH

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Enterobacter quasihormaechei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: China: Jing Zi Habour; Weihai

ncbi_isolation_source: marine

ncbi_organism_name: Tenacibaculum sp. M341

ncbi_submitter: Shandong University


ncbi_country: China

ncbi_isolation_source: sourdough

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_country: USA: Loma Ridge

ncbi_isolation_source: Leaf Litter

ncbi_organism_name: Curtobacterium sp. MMLR14_006

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: North-West University


ncbi_country: USA: WA

ncbi_organism_name: Corynebacterium aurimucosum

ncbi_submitter: University of Washington


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: China: Henan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: feces; 3 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: bioBiome, Inc.


ncbi_organism_name: Nocardioides conyzicola

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Toho University


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio lentus


ncbi_isolation_source: Faeces


ncbi_isolation_source: skin of dog with Canine pyoderma

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_country: Germany

ncbi_isolation_source: Lollo Rosso

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: Proximal colon


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: feces

ncbi_submitter: University of Queensland


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: Laboratory of Genome Science  Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology


ncbi_assembly_name: Luteococcus japonicus LSP Lj1

ncbi_organism_name: Luteococcus japonicus LSP_Lj1

ncbi_submitter: MICALIS


ncbi_isolation_source: feedlot

ncbi_submitter: USDA-ARS-USMARC


ncbi_organism_name: Streptococcus constellatus

ncbi_submitter: SC


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Mameliella alba

ncbi_submitter: Peking University Shenzhen Institute


ncbi_assembly_name: IMG-taxon 2597490350 annotated assembly

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptomyces asiaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Milwaukee

ncbi_isolation_source: Sink

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_isolation_source: hospital sewage

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: Colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: uncultured LGRT01 Alphaproteobacteria SW04_Bin8

ncbi_isolation_source: seawater

ncbi_submitter: iBB-IST


ncbi_organism_name: Parachlamydiaceae bacterium HS-T3

ncbi_submitter: Hokkaido University


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Flavonifractor sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Thauera aminoaromatica

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Haerbin

ncbi_isolation_source: fetilized topsoil

ncbi_submitter: CAU


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Defluviitaleaceae bacterium


ncbi_organism_name: bacterium


ncbi_organism_name: Clostridium perfringens ATCC 13124

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Candidatus Alistipes avistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Caballeronia jiangsuensis

ncbi_submitter: University of Illinois at Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: IL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: uncultured bacterium


ncbi_country: Italy: Puglia; Foggia; Apricena

ncbi_isolation_source: spleen; lymph nodes

ncbi_organism_name: Brucella abortus

ncbi_submitter: University of New Hampshire


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Universidad de Sonora


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Guatemala

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: Soy sauce mash

ncbi_organism_name: Staphylococcus condimenti

ncbi_submitter: Modernising Medical Microbiology


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Solibacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Citrobacter youngae

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: St. Louis

ncbi_isolation_source: Endovascular

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Oman: Somail Ophiolite

ncbi_isolation_source: Aquifer water

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Taiwan

ncbi_isolation_source: pond water

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Daejeonella sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: unknown

ncbi_organism_name: Thermodesulfovibrionia bacterium

ncbi_submitter: UNIVERSITY OF JENA


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Proteiniphilum sp. UBA4907

ncbi_submitter: University of Queensland


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_isolation_source: stool

ncbi_organism_name: Leminorella grimontii

ncbi_submitter: Bacteriology Microbiology, Osaka Institute of Public Health


ncbi_country: Antarctica

ncbi_isolation_source: Lichen

ncbi_organism_name: Lichenihabitans psoromatis

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang university


ncbi_organism_name: Syntrophales bacterium


ncbi_isolation_source: Soft tissue

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_country: China: Yangjiang

ncbi_submitter: South China Agricultural University


ncbi_country: India

ncbi_organism_name: Pantoea dispersa

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudoalteromonas sp. SG41-2

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: China: Shenzhen

ncbi_organism_name: Coprobacter fastidiosus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Dialister invisus

ncbi_submitter: EMG


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Mycoplasma sp. 4463

ncbi_submitter: Institute of Microbiology


ncbi_country: Nicaragua

ncbi_isolation_source: Nicaragua

ncbi_organism_name: Leptospira noguchii

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: USA: Decorah; IA

ncbi_organism_name: Pseudomonas marginalis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Gimesia maris


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: OG1RF CydA::Tn

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Lentzea aerocolonigenes

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Streptosporangium sp. NPDC002721

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Yersinia pestis CMCC96001

ncbi_submitter: Beijing Genomics Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Florida

ncbi_isolation_source: wound

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: CDC


ncbi_country: Belgium

ncbi_isolation_source: Chicken; ceca; Gent; Belgium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus cecorum;x__Enterococcus cecorum DSM 20682 = ATCC 43198


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Actinomyces oris

ncbi_submitter: University of Malaya


ncbi_country: USA: KY

ncbi_isolation_source: blood

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Lysobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Polyangium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prevotella sp.


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Xiamen University


ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Microbacterium oxydans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: PA; Williamsport

ncbi_isolation_source: newt tank

ncbi_organism_name: Chryseobacterium angstadtii

ncbi_strain_identifiers: KM

ncbi_submitter: GCAT-SEEK


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: bacterium D16-50

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Robiginitalea biformata

ncbi_submitter: Shantou University


ncbi_organism_name: Pseudomonas sp. A014

ncbi_submitter: Guangxi Universiy


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Japan Institute for Health Security


ncbi_organism_name: Salmonella sp. SKLX108461

ncbi_submitter: Zhejiang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Firmicutes bacterium CAG:238

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:238


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Tepidanaerobacteraceae bacterium


ncbi_organism_name: uncultured Bacillota bacterium


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Hongan

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Wenchang

ncbi_isolation_source: mangrove estuarine mud

ncbi_organism_name: Martelella sp. HB161492

ncbi_submitter: Hainan Tropical Ocean University


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: India

ncbi_isolation_source: soil

ncbi_organism_name: Serratia marcescens

ncbi_submitter: ONEOMICS PRIVATE LIMITED


ncbi_assembly_name: TthWC1 draft genome1

ncbi_country: Canada

ncbi_isolation_source: woodchip compost

ncbi_submitter: University of Manitoba


ncbi_organism_name: uncultured Zhongshania sp.


ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA

ncbi_organism_name: Escherichia coli O111:NM str. K6904

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. K6904


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Corynebacterium sp. 1222RC1

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Health Canada


ncbi_country: Israel

ncbi_isolation_source: Freshwater from a depth of 5 m in the center of the Lake Kinneret

ncbi_organism_name: Roseateles asaccharophilus

ncbi_strain_identifiers: CECT 7319

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Zymo Research Corporation


ncbi_country: Italy: Rome

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_submitter: University of Zurich


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_isolation_source: ivy leaves

ncbi_strain_identifiers: BGSC 4BG1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar roskildiensis


ncbi_organism_name: Picosynechococcus sp. PCC 73109

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Switzerland

ncbi_isolation_source: Tete de Moine

ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: University of Bern


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Candidatus Pseudoscillospira falkowii

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Pseudoscillospira;s__Candidatus Pseudoscillospira falkowii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pseudoscillospira;s__Candidatus Pseudoscillospira falkowii


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paraburkholderia fungorum

ncbi_submitter: INRAE


ncbi_country: India: Guwahati; Assam

ncbi_isolation_source: Fecal Swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: International Livestock Research Institute


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Kocuria oxytropis

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_submitter: PulseNet USA


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolate: metabat2_XCR1_HOM_7852_bwa.65 MAG

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_strain_identifiers: metabat2_XCR1_HOM_7852_bwa.65 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus sp. WP8

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. WP8


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_country: Japan: Shimane

ncbi_isolation_source: rhizospere of paddy rice (Oryza sativa L.  Koshihikari ) cultivated in a paddy soil that contained 8 mg/kg of 1M HCl-extractable arsenic

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Florida International University


ncbi_country: Georgia: Senaki

ncbi_organism_name: Brucella abortus

ncbi_submitter: NCDC


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Lactobacillus hominis


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: near Morehead City; North Carolina

ncbi_isolation_source: ant colony in branch

ncbi_submitter: Duke University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__ant endosymbionts;g__Candidatus Blochmanniella;x__unclassified Candidatus Blochmanniella;s__Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lentisphaerales bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Malaysia: Pahang

ncbi_isolation_source: marine sediment

ncbi_organism_name: Nocardiopsis sp. MG754419

ncbi_submitter: University of Malaya


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Alteromonas stellipolaris

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Japan: Saga

ncbi_organism_name: Streptomyces acidiscabies

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Tannerella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Canada: Ottawa; Ontario

ncbi_organism_name: Phyllobacterium pellucidum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_country: Taiwan

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_organism_name: Paenibacillus solanacearum

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: AIMST University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Neorhizobium galegae bv. orientalis

ncbi_submitter: UH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: human stool

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: Terrestrial

ncbi_organism_name: Leptolyngbya sp. FACHB-8

ncbi_submitter: South China Normal University


ncbi_organism_name: Lentibacillus sp. L22

ncbi_submitter: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8936

ncbi_submitter: The Xanthomonas Threats project


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-1663

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cochin hospital


ncbi_organism_name: Salmonella sp. SAL4361

ncbi_submitter: Zhejiang university


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter freundii complex sp. 2024EL-00219


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Franconibacter pulveris 601

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Thermoguttaceae bacterium LCP21S3_D4

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: UIUC