ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. 2011C-3270


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: The Microflora Danica Consortium


gtdb_representative: f

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDB8P37P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Paenibacillus sp. YIM B09110

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_submitter: Quadram Institutte


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Sweden: Karlstad

ncbi_isolation_source: blood from 86 year old patient

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


gtdb_type_species_of_genus: t

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Brevibacillus brevis

ncbi_refseq_category: reference genome

ncbi_submitter: SC

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Logan River

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Taiwan

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Zoe

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: United Kingdom: Wales

ncbi_isolation_source: Urine (CYSTO)

ncbi_submitter: University of Liverpool


ncbi_country: Italy: Milan

ncbi_isolation_source: root endosphere

ncbi_organism_name: Streptomyces sp. DEF1AK

ncbi_submitter: University of Milan


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Kingella denitrificans ATCC 33394

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Caccovicinus merdipullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Caccovicinus;s__Candidatus Caccovicinus merdipullorum


ncbi_organism_name: Streptomyces sp. NPDC057092

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Turkey: Kayseri

ncbi_organism_name: Helicobacter kayseriensis

ncbi_submitter: Erciyes Univ. Faculty of Veterinary Medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_assembly_name: IMG-taxon 2663762759 annotated assembly

ncbi_organism_name: Nocardioides psychrotolerans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 5-366-08_S1_C3

ncbi_submitter: IGS


ncbi_isolation_source: Jejunum

ncbi_organism_name: Turicibacter sp. TJ11

ncbi_submitter: USDA ARS


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Coleofasciculus sp.

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Gordonia amicalis

ncbi_strain_identifiers: UFV 4

ncbi_submitter: Universidade Federal de Vicosa


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus infantis

ncbi_submitter: Cinvestav


ncbi_country: China: Henan

ncbi_isolation_source: chicken

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Dorea formicigenerans


ncbi_organism_name: Streptomyces sp. NPDC058473


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolate: SPRUCE 205

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 205

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Spirochaetia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Porphyrobacter sp.


ncbi_organism_name: Streptomyces atroolivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus sp. AZ112

ncbi_submitter: Broad Institute


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Woeseia sp.

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: human gut

ncbi_organism_name: Firmicutes bacterium AF36-3BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF36-3BH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: Aurantimicrobium minutum

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Halomonadaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Guangzhou

ncbi_isolation_source: HBS

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital of Southern Theatre Command of PLA


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: beetle eggs

ncbi_organism_name: Paracidovorax wautersii

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Tepidanaerobacter syntrophicus

ncbi_submitter: Colorado State University


ncbi_assembly_name: Rumen uncultured genome RUG12931

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_country: Philippines

ncbi_isolation_source: urine

ncbi_submitter: St. Luke's Medical Center


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_country: India: Uttar Pradesh; Deoria; Savreji

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microbacterium yannicii PS01

ncbi_submitter: URMITE


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: seawater from hadal water (10;400-10;500 m)

ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Ocean University of China


ncbi_country: Germany: Freising

ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Guelph

ncbi_isolation_source: Lung tissue

ncbi_organism_name: Mycoplasmopsis cynos

ncbi_submitter: University of Guelph


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: regolith

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Holdemanella porci

ncbi_submitter: University of Chicago


ncbi_isolation_source: the fermented dough in Dali

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Yunnan Agricultural University


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Wuhan

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_country: Uganda: Kasese district; Bwera hospital

ncbi_isolation_source: wound

ncbi_organism_name: Wohlfahrtiimonas chitiniclastica

ncbi_submitter: Makerere University


ncbi_organism_name: Escherichia coli TW10828

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Stenotrophomonas sp. C960

ncbi_submitter: Instituto Nacional de Rehabilitacion


ncbi_isolation_source: Faeces


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Taiwan: Taian hot springs; Miaoli

ncbi_isolation_source: water

ncbi_organism_name: Thermosynechococcus sp. B3

ncbi_submitter: Academia Sinica


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Streptomyces anandii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Freshwater under a salinity gradient

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Clemson University


ncbi_country: China

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: City University of Hong Kong


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Ignavibacteria bacterium GWC2_36_12

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium GWC2_36_12


ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: IMG-taxon 2693429887 annotated assembly

ncbi_organism_name: Parafilimonas terrae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Jiangxi Agricultural University


ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point A

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium RIFOXYA1_FULL_40_11


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Sea-surface microlayer

ncbi_organism_name: Loktanella sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: AIMST University


ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Leptolyngbya sp. PLA1

ncbi_submitter: Peking University


ncbi_organism_name: Streptomyces sp. NPDC058614

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Rumen uncultured genome RUG10603

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Patescibacteria group bacterium UBA6532

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA6532


ncbi_organism_name: Idiomarina sp. UBA1919


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD5941

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium UBA927


ncbi_organism_name: Vibrio sp. V25_P4S6T154

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Acinetobacter sp. BIGb0196

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Paracoccus limosus

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Actinotalea sp. AC32

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: urine

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Streptomyces sp. NPDC052492

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Hyphomicrobium sp.


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: University of Fribourg


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Treponema denticola

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacillales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Campylobacter curvus 525.92

ncbi_submitter: TIGR


ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Swansea University


ncbi_submitter: zhengzhou university


ncbi_organism_name: Rhizobium binae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany

ncbi_strain_identifiers: CVUAS 11425

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Asinibacterium sp. OR43

ncbi_submitter: JGI


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-B23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: EMG


ncbi_submitter: University of central Florida


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sanguinis SK115

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG14068

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Guangzhou

ncbi_isolation_source: farmer s market

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: soil from Brazilian tropical mangrove

ncbi_organism_name: Bremerella cremea

ncbi_strain_identifiers: HEX-2 MGV

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Pseudoalteromonas carrageenovora


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: acid gruel

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Inner Mongolia Agricultural Univercity


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium casei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_submitter: UC Davis


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Toho University


ncbi_assembly_name: freshwater MAG --- Ja_bin-2171

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Shenzhen

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: NCIB 3610

ncbi_submitter: Shenzhen University


ncbi_isolation_source: intestines

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Longimicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Arachnia sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Daviesbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;x__unclassified Candidatus Daviesbacteria;s__Candidatus Daviesbacteria bacterium


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Pittsburgh


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: India: Aurangabad

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Peptostreptococcus sp.


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Taiwan

ncbi_isolation_source: garden lettuce

ncbi_organism_name: Chryseobacterium formosense

ncbi_submitter: GCAT-SEEK


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H1589

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Bangladesh Agricultural Research Institute


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bartonella apis


ncbi_assembly_name: IMG-taxon 2710264754 annotated assembly

ncbi_organism_name: Paenibacillus sp. RU4T

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: Italy: Venice Lagoon

ncbi_isolation_source: marine sediment

ncbi_organism_name: Boseongicola sp.

ncbi_submitter: National Institute of Oceanography and Applied Geophysics - OGS


ncbi_country: China: Fujian

ncbi_organism_name: Shewanella aegiceratis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Mexico

ncbi_isolation_source: feces (Oryctolagus cuniculus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Antioquia


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Georgia

ncbi_isolation_source: normally sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Research Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Chongqing

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_country: China: Hangzhou

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Finland

ncbi_organism_name: Leuconostoc lactis

ncbi_strain_identifiers: CIRM-BIA 647

ncbi_submitter: Brigham Young University


ncbi_country: New Zealand

ncbi_isolation_source: Bobby veal steak

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Hominilimicola sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thalassospira lucentensis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Agromyces sp. CCNWLW203

ncbi_submitter: Northwest A&F University


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Paludibacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Gambia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: jiamusi

ncbi_isolation_source: root

ncbi_organism_name: Sphaerisporangium perillae

ncbi_submitter: School of life science


ncbi_organism_name: uncultured Chlamydiales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;x__environmental samples;s__uncultured Chlamydiales bacterium


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: apoplast

ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cepheid


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Amaricoccus macauensis

ncbi_submitter: Shenzhen University


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_submitter: Chinese Academy of Agricultural Sciences (CAAS)


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acetobacter aceti

ncbi_submitter: Teagasc


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: uncultured Halioglobus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: uncultured Caulobacterales bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: sputum

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Anaerococcus hydrogenalis


ncbi_country: Norway

ncbi_isolation_source: dairy

ncbi_organism_name: Leuconostoc mesenteroides subsp. cremoris

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Bifidobacterium pullorum subsp. saeculare

ncbi_submitter: Veterinary Research Institute


ncbi_country: China: Guangzhou

ncbi_isolation_source: skin sample

ncbi_organism_name: Sandaracinobacteroides hominis

ncbi_strain_identifiers: SZY PN-1

ncbi_submitter: Guangdong Provincial Hospital of Traditional Chinese Medicine


ncbi_country: Germany: Saxony

ncbi_isolation_source: isolated from water of a pilot treatment plant for acidic mine drainage

ncbi_organism_name: Acidiphilium sp. JA12-A1

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: Argentina: Buenos Aires; a tawn park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. AR8-1

ncbi_submitter: University of Bialystok

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. AR8-1


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: France: Chassieu

ncbi_isolation_source: urban runoff waters

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Claude Bernard Lyon 1 university


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Litorimonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Spain: Huelva

ncbi_isolation_source: saltern

ncbi_organism_name: Spiribacter salinus

ncbi_submitter: University of Seville


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: 2297MB;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Enterococcus hirae


ncbi_country: Netherlands

ncbi_isolation_source: freshwater

ncbi_organism_name: Microcystis aeruginosa PCC 7806SL

ncbi_strain_identifiers: PCC 7806SL

ncbi_submitter: Institute of Hydrobiology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;x__Oscillatoriophycideae;o__Chroococcales;f__Microcystaceae;g__Microcystis;s__Microcystis aeruginosa;x__Microcystis aeruginosa PCC 7806;x__Microcystis aeruginosa PCC 7806SL


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parasutterella excrementihominis


ncbi_isolation_source: lake water

ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_organism_name: Acinetobacter geminorum

ncbi_submitter: Nanyang Technological University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Nigeria

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: SC


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: Norway: Svalbard; Spitsbergen

ncbi_isolation_source: ice-free soil under anthropogenic influence from the patio of the Polish Polar Station Hornsund

ncbi_organism_name: Rhodococcus sp. ARC_M6

ncbi_submitter: University of Warsaw

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. ARC_M6


ncbi_country: Belgium

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_country: China: Shanghai

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus T86825

ncbi_submitter: Broad Institute


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: EMG


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: China: Xinjiang

ncbi_isolation_source: Tailan River

ncbi_organism_name: Streptomyces sp. TRM68416

ncbi_submitter: Tarim University


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: Thailand

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S005

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S005


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-351

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-351


ncbi_organism_name: Escherichia albertii

ncbi_submitter: CDC


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Portugal: North and Centre

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Faculty of Pharmacy, University of Porto


ncbi_organism_name: Parasphingorhabdus litoris

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolate: MAG 1

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Hydrogenothermus sp.

ncbi_strain_identifiers: MAG 1

ncbi_submitter: WHOI


ncbi_country: USA: San Francisco; CA

ncbi_organism_name: Bartonella quintana JK 67

ncbi_strain_identifiers: JK 67


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut


ncbi_country: Russia

ncbi_isolation_source: a paper mill waste water polluted pond

ncbi_organism_name: Acetobacterium bakii

ncbi_submitter: Korean Advanced Institute of Science and Technology


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Kutzneria sp.

ncbi_submitter: Zhejiang University


ncbi_country: Brazil

ncbi_organism_name: Bacillus sp. AN2

ncbi_submitter: UEZO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AN2


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Hong Kong

ncbi_isolation_source: Shatin WWTPs_19 WWTPs effluent

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Hangzhou

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Streptomyces griseocarneus

ncbi_submitter: Aarhus University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA:Florida; Summerland Key

ncbi_organism_name: Streptomyces sp. WMMC1477

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: EMG


ncbi_organism_name: Lacibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: October University for Modern Sciences and Arts


ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: HUM-327-D1 repl1

ncbi_submitter: University of Tartu


ncbi_country: Mexico

ncbi_isolation_source: cultivation media

ncbi_strain_identifiers: BCG Pasteur ATCC 35734

ncbi_submitter: National Center of Infectious and Parasitic Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Paenibacillus sp. FSL H7-0357

ncbi_submitter: Penn State


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shangdong

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Sphaerochaetaceae bacterium


ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_country: Kenya

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: Taiwan: Kueishan Island

ncbi_isolation_source: seawater from shallow-sea hydrothermal system

ncbi_organism_name: Maribacter hydrothermalis

ncbi_submitter: Xiamen University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_isolate: SPRUCE 640

ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_strain_identifiers: SPRUCE 640

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Neisseria sp.

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: Iowa State University


ncbi_submitter: Penn State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Glutamicibacter sp. TV12E

ncbi_submitter: Ataturk Universitesi


ncbi_organism_name: uncultured Thermotogaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Aeromonas sp. 602826

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces griseoluteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock bioreactor

ncbi_organism_name: Planctomycetales bacterium 71-10

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Ireland

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens


ncbi_country: Belarus

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: BIM B-1312D

ncbi_submitter: Institute of Microbiology, Belarus National Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_assembly_name: Rumen uncultured genome RUG12806

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_country: USA: Ohio; western Lake Erie

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NHGRI/NIH


ncbi_country: Ireland: Cork

ncbi_isolation_source: Cork University Hospital

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: Cork Institute Of Technology


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Zhejiang

ncbi_organism_name: Sphingomonas paucimobilis

ncbi_submitter: Zhejiang sci-tech university


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_assembly_name: Rumen uncultured genome RUG12134

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Streptomyces sp. NPDC005317


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 324

ncbi_strain_identifiers: SNUC 5748

ncbi_submitter: University of Calgary


ncbi_country: USA: California

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Para


ncbi_country: Australia: Brisbane

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: The University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: lake water

ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Zimbabwe

ncbi_isolation_source: Mahewu

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: University of Alberta


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D1_bin-0408

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_submitter: EMG


ncbi_country: China: Shaoguan

ncbi_isolation_source: Humified soil

ncbi_organism_name: Firmicutes bacterium FC5

ncbi_submitter: Guilin Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium FC5


ncbi_country: New Zealand: Auckland

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: UMR 1137 IAME


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_isolation_source: Cheese

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Uniwersytet Warminsko-Mazurski w Olsztynie


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 6499

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux - La Balme-Les Grottes


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Roseovarius sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 3954

ncbi_submitter: University Hospital Regensburg


ncbi_country: Venezuela

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Toho University


ncbi_country: China

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: Guangxi Academy of Fishery Sciences


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_country: South Korea:Seoul

ncbi_organism_name: Escherichia coli

ncbi_submitter: Samsung Medical Center


ncbi_organism_name: Brevinematia bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_assembly_name: freshwater MAG --- MJ120924B_bin-354

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2687453685 annotated assembly

ncbi_organism_name: Bradyrhizobium sp. OK095

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Thermus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: City University of Hong Kong


ncbi_country: Brazil

ncbi_isolation_source: pool of ovaries of chickens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum/Pullorum;x__Salmonella enterica subsp. enterica serovar Gallinarum/Pullorum str. FCAV198


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany

ncbi_isolation_source: pleural fluid

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ATCC 6538

ncbi_submitter: FU Berlin


ncbi_country: USA: MN

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Shaanxi

ncbi_isolation_source: chicken cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Hydrogenimonas sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Pharygitis

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1472 from squamous cell carcinomas patient MST012

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Desulfocapsaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_submitter: Univeristy of South Australia


ncbi_organism_name: Salmonella sp. 2021_1741

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudoalteromonas distincta

ncbi_submitter: University of East Anglia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_organism_name: Candidatus Krakonobacterium acarorum

ncbi_submitter: Czech Science Foundation


ncbi_organism_name: Candidatus Azotimanducaceae bacterium


ncbi_country: USA: Indiana

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MN 5

ncbi_submitter: USDA-ARS


ncbi_isolation_source: Invasive

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: uncultured Desulfobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system


ncbi_organism_name: Escherichia coli O28ac:NM str. 02-3404

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O28ac:NM;x__Escherichia coli O28ac:NM str. 02-3404


ncbi_organism_name: uncultured Prevotella sp.


ncbi_assembly_name: Chrysiogenes arsenatis

ncbi_country: Australia: Ballarat Goldfields

ncbi_isolation_source: reed bed mud

ncbi_organism_name: Chrysiogenes arsenatis DSM 11915

ncbi_submitter: UC Davis Genome Center


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Vestfold Hospital Trust


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shandong

ncbi_isolation_source: Retail pork

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University


ncbi_organism_name: Mycobacterium avium

ncbi_submitter: Friedrich-Loeffler-Institut, Institute of Molecular Pathogenesis


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Algibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Australia

ncbi_organism_name: Burkholderia pseudomallei MSHR296

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas reactans

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides bouchesdurhonensis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Comenius University Science Park


ncbi_country: USA: WA

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Washington


ncbi_country: Canada: Alberta;Edmonton

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: AAFC


ncbi_assembly_name: Rumen uncultured genome RUG12862

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: freshwater MAG --- KR4_bin-0531

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_organism_name: Cellulomonas carbonis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GP01-A11

ncbi_submitter: Arkin Lab


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Novosphingobium sp. CCH12-A3

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_country: USA: New York

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Pakistan: Isb

ncbi_isolation_source: probiotic supplement

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: NIBGE


ncbi_organism_name: Buchnera aphidicola (Pterocallis alni)

ncbi_submitter: Centre for Microbiology and Environmental Systems Science


ncbi_isolation_source: trach aspirate

ncbi_organism_name: Lactobacillus sp. HMSC061B07

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Sphingobacterium griseoflavum


ncbi_organism_name: Tenacibaculum maritimum

ncbi_submitter: Croatian Veterinary Institute


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F36090

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: fecal material

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Dickeya fangzhongdai

ncbi_submitter: Sunchon National University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Japan:Ehime; Matsuyama

ncbi_organism_name: Paenibacillus ehimensis NBRC 15659

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfonatronum sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: MA; Boston

ncbi_organism_name: Serratia marcescens


ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: EMG


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD17517


ncbi_country: China: Henan

ncbi_isolation_source: patient

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Yangzhou University


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_submitter: Toho University


ncbi_organism_name: Zhongshania sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Melbourne

ncbi_isolation_source: clinical

ncbi_strain_identifiers: ECO 139

ncbi_submitter: Monash University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_assembly_name: freshwater MAG --- C-2_bin-574

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Mycobacterium tuberculosis MD17749

ncbi_submitter: Broad Institute


ncbi_organism_name: Corynebacterium minutissimum

ncbi_submitter: Universidade Federal do Para


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Klebsiella michiganensis


ncbi_organism_name: uncultured Puniceicoccaceae bacterium


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: Rural Development Administration


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of Milan


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Bacteroides eggerthii


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Latilactobacillus sakei


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Streptomyces sp. NPDC005531

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterocloster sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: Rhode Island; Narragansett; Narrow River (Pettaquamscutt River)

ncbi_isolation_source: marine estuary

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Blautia producta

ncbi_submitter: Vedanta Biosciences, Inc.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Loyalsock Creek; Pennsylvania

ncbi_isolation_source: Water

ncbi_organism_name: Flavobacterium sp. LC2016-13

ncbi_submitter: Lycoming College


ncbi_organism_name: Bacilli bacterium


ncbi_country: Tajikistan

ncbi_isolation_source: seeds

ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: Kazan State Agrarian University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_country: USA: AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: biofilm

ncbi_organism_name: Proteiniphilum sp. UBA2288

ncbi_submitter: University of Queensland


ncbi_country: Gambia

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Candidatus Fervidibacter sp.

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;x__unclassified Candidatus Fervidibacter;s__Candidatus Fervidibacter sp.


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Dorea sp. 5-2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Saccharothrix sp. BKS2

ncbi_submitter: Laboratoire de biologie des systemes microbiens LBSM


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Istituto di Scienze Biomediche della Difesa


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shandong

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_country: China: Wuzhou

ncbi_isolation_source: nodules

ncbi_organism_name: Bradyrhizobium guangzhouense

ncbi_strain_identifiers: CCBAU 53426

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: United Kingdom

ncbi_isolation_source: adult insect on Urtica dioica

ncbi_organism_name: Serratia symbiotica

ncbi_submitter: Queen Mary University of London


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: Rumen uncultured genome RUG10746

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Reyranella massiliensis 521

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Thailand

ncbi_organism_name: Photorhabdus aegyptia

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: Rumen uncultured genome RUG10913

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: South Africa: Limpopo Province

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus sp. MHSD_36

ncbi_submitter: University of Johannesburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. MHSD_36


ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter sp. SX206

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: OH

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: AK

ncbi_isolation_source: Cloacae

ncbi_organism_name: Escherichia sp. MOD1-EC6144

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Guangzhou

ncbi_organism_name: Salmonella sp. L-S3099

ncbi_submitter: South China Agricultural University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: ear

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: IMG-taxon 2724679686 annotated assembly

ncbi_organism_name: Geodermatophilus aquaeductus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_country: Colombia

ncbi_isolation_source: Rice soil

ncbi_organism_name: Clostridium sp. IBUN125C

ncbi_submitter: Universidad Nacional de Colombia


ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Microbacterium amylolyticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: New Zealand

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B195;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: The University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG14351

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Chinese Academey of Agricultural Sciences


ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: NC

ncbi_isolation_source: Yolk Sac

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_submitter: sichuan university


ncbi_organism_name: Melioribacter roseus P3M-2

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces virginiae


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_isolate: Beef cow fecal

ncbi_strain_identifiers: Beef cow fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: brussel sprout

ncbi_organism_name: Weissella confusa

ncbi_submitter: University of Saskatchewan


ncbi_isolate: GDZQ

ncbi_organism_name: Candidatus Profftella armatura

ncbi_strain_identifiers: GDZQ

ncbi_submitter: School of Life Sciences and Food Engineering

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Betaproteobacteria;o__;f__;g__Candidatus Profftella;s__Candidatus Profftella armatura

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Profftella;s__Candidatus Profftella armatura


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Candidatus Scalindua sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;x__environmental samples;s__uncultured Candidatus Scalindua sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Milan


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: bacterium TMED161

ncbi_submitter: Tara Oceans Consortium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Streptomyces sp. NPDC092296

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Enterococcus pernyi

ncbi_submitter: Broad Institute


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Prochlorococcus sp. MIT 9314

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: University of Technology Sydney


ncbi_isolate: SPRUCE 426

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 426

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Shanghai

ncbi_submitter: School of Agriculture and Biology, Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Bioprox


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Vibrio cincinnatiensis

ncbi_submitter: CDC


ncbi_organism_name: Micromonospora profundi

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Haemophilus haemolyticus HK386

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomyces minihominis

ncbi_submitter: URMITE


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0994

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_country: China: Hainan

ncbi_isolation_source: Hainan; China

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Desulfarculaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Australia: Newcastle

ncbi_submitter: University of Queensland


ncbi_country: USA: Florida keys

ncbi_isolation_source: Ocean water off Florida Keys

ncbi_organism_name: Micromonospora sp. WMMB235

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Sulfurovum sp. UBA4790


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway