ncbi_country: Germany

ncbi_isolation_source: kefir

ncbi_organism_name: Acetobacter syzygii

ncbi_submitter: SysMilk


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA:New York City

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Flavobacteriales bacterium UBA5025

ncbi_submitter: University of Queensland


ncbi_assembly_level: Complete Genome

ncbi_country: China

ncbi_isolation_source: infant fecal

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Peking University


ncbi_assembly_level: Contig

ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


gtdb_representative: t

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Acutalibacter ornithocaccae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University College Cork


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ideonella paludis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: [Ruminococcus] torques


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC058434

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Planctomycetota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_name: Burkholderia  cenocepacia BCC0112

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella disiens;x__Prevotella disiens JCM 6334 = ATCC 29426


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Ruminococcus sp. UBA4240

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Belgium

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic: Praha

ncbi_isolation_source: sputum-aspirate

ncbi_organism_name: Morganella morganii

ncbi_submitter: Charles University in Prague


ncbi_submitter: WTSI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human stool

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Orientia tsutsugamushi

ncbi_submitter: OXFORD UNIVERSITY


ncbi_country: USA: Baltimore

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Burkholderia thailandensis 2002721643

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: Canada: Powell Lake South basin; British Columbia

ncbi_isolation_source: lake water

ncbi_organism_name: Streptomycetaceae bacterium

ncbi_submitter: Dalhousie University


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: Human sputum

ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Cyanobacteria bacterium OH_PDB_112

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium OH_PDB_112


ncbi_country: USA: Ohio

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Salmonella sp. 2564

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Auckland


ncbi_organism_name: Streptomyces sp. NPDC096068

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: EMG


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: Canada

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Centers for Disease Control, Taiwan


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: inflamed tissue lesion of infected patient during surgery

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Dhaka


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: BGI


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_isolation_source: Anemone Surface

ncbi_organism_name: Cellulophaga lytica

ncbi_submitter: UNIVERSITY OF LA ROCHELLE - UMR 7266 CNRS LIENSS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni


ncbi_country: China: Fushun

ncbi_isolation_source: Soil for degradable agricultural mulch

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Shenyang Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: Environment

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G.Caporale"


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: Croatia: Split

ncbi_isolation_source: itra-abdominal tract infection

ncbi_submitter: AstraZeneca


ncbi_isolation_source: soil

ncbi_organism_name: Pseudoxanthomonas sp. PXM04

ncbi_submitter: University of Chicago


ncbi_country: China

ncbi_submitter: Hangzhou Medical University


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: USA: Virginia

ncbi_isolation_source: vaginal

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Consortium


ncbi_country: China: Huizhou

ncbi_isolation_source: urine

ncbi_submitter: South China Agricultural University


ncbi_country: Norway

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Escherichia coli O157:H7 str. EC4196

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. EC4196


ncbi_country: Denmark: Jaegersborg Dyrehave

ncbi_isolation_source: grassland soil

ncbi_organism_name: Peribacillus simplex

ncbi_submitter: Technical University of Denmark


ncbi_country: Lebanon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: lebanese american university


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: NY

ncbi_isolation_source: intestine

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Mesorhizobium sp. M0898

ncbi_submitter: Washington State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella michiganensis


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Paenibacillus polymyxa

ncbi_strain_identifiers: NRRL B-173

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Glaciecola sp. UBA983

ncbi_submitter: University of Queensland


ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Ruminococcus bovis


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: turkey

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_organism_name: uncultured Ureaplasma sp.


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: pig farm

ncbi_submitter: Yangzhou University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: South Atlantic Ocean

ncbi_organism_name: Oceanicaulis sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA3310


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Walloon Agricultural Research Centre


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Pseudochrobactrum sp. HB0163

ncbi_submitter: Zhejiang university


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Niallia sp. Krafla_26

ncbi_submitter: University of Neuchatel


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Candidatus Brocadiia bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;x__unclassified Candidatus Brocadiia;s__Candidatus Brocadiia bacterium


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Alabama

ncbi_isolation_source: rhizosphere of the salt marsh grasses

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Cancer Hospital Chinese Academy of Medical Sciences, Shenzhen Center


ncbi_submitter: Technical University of Munich


ncbi_organism_name: Ferruginibacter sp. SUN002

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Corynebacterium minutissimum

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: University of Parma


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0882

ncbi_submitter: Broad Institute


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium sp. E2327

ncbi_submitter: JCVI


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: Germany: Muenster

ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: University Hospital Muenster


ncbi_country: Hungary

ncbi_organism_name: Bordetella hinzii 5132


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_organism_name: Oxalobacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: ACVEI

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA1040

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1040


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia faecis

ncbi_submitter: University of Chicago


ncbi_country: United Kingdom: England

ncbi_isolation_source: Cecal contents

ncbi_organism_name: Faecalibacterium sp. UBA1819


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: Urine CVS

ncbi_submitter: Washington University


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Vienna


ncbi_country: China: Weihai

ncbi_organism_name: Exiguobacterium sp. H66

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. H66


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Universiteit Antwerpen


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 108 - depth 500m

ncbi_organism_name: Idiomarina sp. REDSEA-S27_B4

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Siccibacter colletis

ncbi_submitter: USDA-ARS


ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Uppsala University


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Konstanz


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: bovine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Brazil: Rio Verde

ncbi_isolation_source: Bulk soil

ncbi_organism_name: Bradyrhizobium sp. CER78

ncbi_submitter: Universidade Federal de Vicosa


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: blood of a patient with bacteraemia of unknown origin

ncbi_organism_name: Corynebacterium gottingense

ncbi_refseq_category: reference genome

ncbi_submitter: Bielefeld University


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: shanghai ocean university


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_organism_name: Pseudomonas sp. NBRC 111144

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Staphylococcus aureus AH2

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


gtdb_type_species_of_genus: t

ncbi_assembly_level: Chromosome

ncbi_organism_name: Fibrella aestuarina BUZ 2

ncbi_strain_identifiers: BUZ 2

ncbi_submitter: Center for Biotechnology, Bielefeld University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Spirosomataceae;g__Fibrella;s__Fibrella aestuarina;x__Fibrella aestuarina BUZ 2


ncbi_country: Germany

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_country: China: Suzhou

ncbi_isolation_source: sputum

ncbi_submitter: Suzhou Hospital of Traditional Chinese Medicine


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Bronchial aspiration

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Reference Center of Antibiotics Resistance


ncbi_country: China: Xuzhou

ncbi_submitter: University College London (UCL)


ncbi_country: China

ncbi_isolation_source: aquicultural seawater

ncbi_organism_name: Vreelandella venusta

ncbi_submitter: Third Institute of Oceanography


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3065

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Rhizobium esperanzae

ncbi_strain_identifiers: SEMIA 414

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridium botulinum F str. 230613

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum F;x__Clostridium botulinum F str. 230613


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: EMG


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Saccharicrinis sp.

ncbi_submitter: McGill University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Korea Food Research Institute


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: Urine Blad

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Uganda: Kampala

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Marian University College


ncbi_isolation_source: coastal marine sediment

ncbi_organism_name: Geofilum rhodophaeum

ncbi_submitter: Shandong University


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: Rectum

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Japan: Toyonaka

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces griseus subsp. griseus

ncbi_submitter: China pharmaceutical university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces griseus group;x__Streptomyces griseus subgroup;s__Streptomyces griseus;sb__Streptomyces griseus subsp. griseus


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolate: Clostridioides difficile

ncbi_isolation_source: Feces

ncbi_organism_name: Clostridioides difficile

ncbi_strain_identifiers: Clostridioides difficile

ncbi_submitter: Leiden University Medical Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: South Africa

ncbi_isolation_source: Fresh produce

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: UPMP 609

ncbi_submitter: University of Pretoria


ncbi_country: Belgium

ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_organism_name: Ralstonia solanacearum IPO1609

ncbi_submitter: Genoscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia solanacearum;x__Ralstonia solanacearum IPO1609


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Gallimonas faecium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas faecium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas faecium


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: COPD M3a

ncbi_submitter: Chengdu University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Don State Technical University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Sudan: Khartoum; Military Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_country: Honduras

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae HE12

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R22(2017)

ncbi_submitter: University of Sao Paulo


ncbi_assembly_name: freshwater MAG --- Loc090519-7m_bin-1587

ncbi_isolation_source: lake water

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: forest soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_organism_name: Streptomyces lavendulae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: JiLin Agricultural Science and Technolog


ncbi_organism_name: Klebsiella sp. 2HUCk3cef

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: University of Minnesota


ncbi_organism_name: Prevotella intermedia

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Micromonospora sp. LA-10

ncbi_submitter: James Madison Univeristy


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Institut Pasteur


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- Umea_bin-04806

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Montana State University


ncbi_organism_name: uncultured Clostridium sp.


ncbi_assembly_name: Psychrobacter sp Pi2-51

ncbi_isolate: Psychrobacter sp. Pi2-51

ncbi_isolation_source: sea water

ncbi_organism_name: Psychrobacter sp. Pi2-51

ncbi_strain_identifiers: Psychrobacter sp. Pi2-51

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus UCIM6056

ncbi_submitter: Broad Institute


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Xiamen University


ncbi_organism_name: Tissierellales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium UBA2830

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Santos Basin

ncbi_isolation_source: oil reservoir

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Stutzerimonas frequens

ncbi_submitter: Third Institute of Oceanography


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Monash University


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_country: USA: California; Alameda County


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Litorilinea aerophila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Norway: Vestfold

ncbi_isolation_source: wound swab

ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Pleural fluid

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Streptomyces sp. ME02-6979-3A


ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Neisseria viridiae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: United Kingdom

ncbi_organism_name: Coprococcus comes


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: mouse gut metagenome


ncbi_assembly_name: Rumen uncultured genome RUG12242

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Pittsburgh; PA

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_country: China: Luzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: WT

ncbi_submitter: university


ncbi_country: China: Huizhou

ncbi_isolation_source: catheter

ncbi_submitter: South China Agricultural University


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium HGW-Deltaproteobacteria-19


ncbi_country: Sri Lanka

ncbi_isolation_source: vaginal swab post-delivery

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_organism_name: Advenella kashmirensis

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Kvitko Lab


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Seawater (1m depth)

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: University of Queensland


ncbi_country: Brazil

ncbi_isolation_source: Cake

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: Minesota

ncbi_submitter: NCTR/US FDA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Sideroxydans sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0527

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_assembly_name: BSN31-2 closure

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Loc080925-5-5m_bin-0942

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Brucella abortus

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: uncultured Sulfuricella sp.


ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces sp. NPDC020707

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthobacter autotrophicus

ncbi_submitter: Harvard Medical School


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_submitter: Chinese Academy of Agricultural Sciences (CAAS)


ncbi_organism_name: uncultured Thalassospiraceae bacterium


ncbi_organism_name: Kordiimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_assembly_name: Rumen uncultured genome RUG296

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_isolate: SPRUCE 475

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 475

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: water

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Austria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Ilumatobacteraceae bacterium


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_submitter: addis ababa university


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Middle Tennessee State University


ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Netherlands: Weert

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium noviomagense

ncbi_submitter: Uppsala University


ncbi_organism_name: Limnospira fusiformis SAG 85.79

ncbi_submitter: University of California, Santa Cruz


ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Serratia sp. AS12

ncbi_submitter: US DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. AS12


ncbi_organism_name: Kofleriaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium RIFCSPHIGHO2_02_FULL_39_16


ncbi_country: Italy: Molveno (TN)

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: Caecum

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Paraguay

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Nocardioides zeicaulis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom:England


ncbi_country: Algeria

ncbi_isolation_source: Bathing waters

ncbi_organism_name: Providencia stuartii

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides fragilis 3_1_12

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: CIRM-BIA 105

ncbi_submitter: Brigham Young University


ncbi_organism_name: Microvirga aerophila

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Ontario

ncbi_isolation_source: beef

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolate: Pseudomonas sp. Irchel 3F3

ncbi_organism_name: Pseudomonas sp. Irchel 3F3

ncbi_strain_identifiers: Pseudomonas sp. Irchel 3F3

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_assembly_name: IMG-taxon 2657245707 annotated assembly

ncbi_organism_name: Streptomyces sp. DvalAA-14

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_country: France

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_country: China

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Provincial Hospital Affiliated to Shandong First Medical University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Japan

ncbi_isolation_source: Water collected from a pond

ncbi_organism_name: Cereibacter sphaeroides

ncbi_strain_identifiers: HJ

ncbi_submitter: Kobe University


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Helsinki


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_W_4

ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Erwinia sp. Eh17-17

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: Australia: New South Wales

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Thailand: Roi et

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kasetsart University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Chongqing

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Citrus Research Institute, Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Madison; Wisconsin

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_organism_name: Pseudomonas aeruginosa LESlike5

ncbi_submitter: IBIS, University Laval


ncbi_country: United Kingdom: Westonbirt

ncbi_isolation_source: lesion

ncbi_organism_name: Scandinavium manionii

ncbi_submitter: UWE


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: SRI PCM FMBA of Russia


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Filifactor alocis

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;s__Candidatus Portnoybacteria bacterium CG_4_9_14_3_um_filter_40_10


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Desulfobulbus sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Beijing

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;o__Eggerthellales;f__Eggerthellaceae;g__Gordonibacter;s__Gordonibacter massiliensis (ex Traore et al. 2017)


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_country: Tunisia

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Neuchatel


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Ruminococcus sp. UBA3707

ncbi_submitter: University of Queensland


ncbi_isolate: Streptococcus species

ncbi_isolation_source: Human

ncbi_organism_name: bacterium

ncbi_strain_identifiers: Streptococcus species

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: uncultured Bacteriovorax sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Canada: Alberta

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: NC

ncbi_isolation_source: plant root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Methylocystis sp.

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridiales bacterium VE202-14

ncbi_submitter: The University of Tokyo


ncbi_submitter: EMG


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Grant County; WA

ncbi_isolation_source: decayed; red-colored wood collected on the shore of Soap Lake

ncbi_organism_name: Nitrincola lacisaponensis

ncbi_submitter: Institute of Microbial Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: GM-anode biofilm

ncbi_organism_name: Clostridium sp. UBA699

ncbi_submitter: University of Queensland


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: University of Manitoba


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Thermoanaerobacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiaceae bacterium AF02-42

ncbi_submitter: BGI


ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: inshore coral nursery; Key West; FL

ncbi_isolation_source: surface mucus layer

ncbi_organism_name: Vibrio coralliilyticus

ncbi_submitter: University of Florida


ncbi_organism_name: Leuconostoc citreum


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter sp. WU_MDCI_Abxb74

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Vibrio ishigakensis


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Alkaliphilus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Jinhua

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: UZ Gent


ncbi_country: China

ncbi_organism_name: Pseudomonas sp. 18073667

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Afghanistan

ncbi_isolation_source: stray dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_country: Colombia

ncbi_isolation_source: laying hens (healthy)

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Burkholderia sp. BCCCDS15

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Whole genome assembly

ncbi_organism_name: Citrobacter freundii GTC 09629

ncbi_submitter: Institute of Microbial Technology (IMTECH), Chandigarh, India 160036

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;s__Citrobacter freundii;x__Citrobacter freundii GTC 09629


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprococcus sp.


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. D3

ncbi_submitter: Soochow University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Woeseiaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: IMG-taxon 2582581262 annotated assembly

ncbi_organism_name: Desulfopila aestuarii DSM 18488

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Pearl and Hermes Atoll; Northwestern Hawaiian Islands

ncbi_isolation_source: anchialine pool

ncbi_organism_name: Terasakiispira papahanaumokuakeensis

ncbi_submitter: University of Hawaii at Manoa


ncbi_country: Thailand

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_organism_name: Vibrio sp. HDW18

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Mageeibacillus sp. UBA1257

ncbi_submitter: University of Queensland


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Egypt: Wadi al Natrun

ncbi_isolation_source: Enrichment culture from water sample collected from hypersaline alkaline lakes

ncbi_organism_name: Chitinispirillum alkaliphilum

ncbi_submitter: Centre Bioengineering RAS


ncbi_organism_name: Aeromonas bestiarum

ncbi_strain_identifiers: CECT 4227

ncbi_submitter: UCONNMISEQ


ncbi_organism_name: Methanobacteriaceae archaeon

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Ireland

ncbi_isolation_source: Dairy fermentation

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University College Cork


ncbi_country: Germany: Lake Stechlin

ncbi_genome_category: derived from single cell

ncbi_isolation_source: 10 single cells amplified by MDA; cell type akinete; from sediment

ncbi_organism_name: Dolichospermum sp. ST_sed4

ncbi_submitter: CSIRO


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: IA

ncbi_isolation_source: grainbin dust

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: New York

ncbi_organism_name: Megasphaera elsdenii


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Tift Co.; GA

ncbi_isolation_source: thrip feces from peanut leaf

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: soil

ncbi_organism_name: Sphingomonas insulae

ncbi_submitter: Shin's Lab


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Streptococcus iniae

ncbi_submitter: A*STAR


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Streptococcus agalactiae GB00900

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: India: Mumbai

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Christian Medical College


ncbi_isolation_source: uterus cytobrush

ncbi_organism_name: Pediococcus pentosaceus

ncbi_strain_identifiers: GBRCKU

ncbi_submitter: GBRC


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Veillonella atypica

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: USA: Bar Harbor; ME; MDIBL

ncbi_organism_name: Pseudoalteromonas agarivorans

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Alistipes merdigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Gaiella sp.

ncbi_submitter: Zhejiang University


ncbi_country: China:South China Sea

ncbi_isolation_source: Surface seawater of South China Sea

ncbi_organism_name: Paraphotobacterium marinum

ncbi_submitter: Third Institute of Oceanography, SOA


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Thailand: Chiang Mai province

ncbi_isolation_source: Human feces

ncbi_submitter: Faculty of Veterinary science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Scatomonas merdigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scatomonas;s__Candidatus Scatomonas merdigallinarum


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Zhejiang Institute for Food and Drug Control


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northwestern University


ncbi_country: Japan: Okinawa

ncbi_isolation_source: Stomach biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Heihe; Heilongjiang

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium sp. AUGA SZCCT0105

ncbi_strain_identifiers: AUGA SZCCT0105

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Shigella boydii

ncbi_strain_identifiers: NCTC 9734

ncbi_submitter: CDC


ncbi_isolate: metabat2_XCR1_HET_6747_bwa.82 MAG

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_strain_identifiers: metabat2_XCR1_HET_6747_bwa.82 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Caulobacteraceae bacterium


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus canis

ncbi_submitter: University of Glasgow


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine, Chulalongkorn University


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Candidatus Lutibacillus vidarii

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: KAUST


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Gulf of Mexico

ncbi_isolation_source: sample BD02T18 sea water enriched with oil for 64 days

ncbi_submitter: Lawrence Berkeley National Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__'Osedax' symbiont bacterium Rs2_46_30_T18


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp H-36

ncbi_strain_identifiers: Hp H-36

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Antarctica

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudoalteromonas sp. S8-38

ncbi_submitter: University of Florence


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolate: YSOFP

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_country: India: Western Puga Valley; Laddakh

ncbi_isolation_source: Microbila mat community growing on a geothermal spring

ncbi_organism_name: Thermosynechococcus sp. M46_R2017_013

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella variicola

ncbi_strain_identifiers: MGH 20

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Lachnospiraceae bacterium 10-1


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacillus sp. PS108

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. PS108


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: New Zealand: Palmerston North

ncbi_organism_name: Faecalibacterium sp. I4-3-84

ncbi_submitter: AgResearch


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter sp. 111

ncbi_submitter: University of California at Davis


ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D1_bin-0644

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: South Korea: Daejeon

ncbi_organism_name: Mucilaginibacter ginsenosidivorax

ncbi_submitter: Hankyong National University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: [Eubacterium] siraeum


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Streptomyces antibioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: feed

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Marinomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Piscinibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Georgia

ncbi_isolation_source: Lake Lanier

ncbi_organism_name: Rickettsiales bacterium UBA2461

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Poland

ncbi_isolation_source: dumplings

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Warsaw


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of British Columbia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Croatia

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Aberdeen


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Corynebacterium sp.


ncbi_country: USA: CA

ncbi_isolation_source: Air conditioning system

ncbi_organism_name: Francisella frigiditurris

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1745


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: OK

ncbi_isolation_source: antelope feces (Antilocapra americana)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Botucatu; Sao Paulo State

ncbi_isolation_source: urine

ncbi_submitter: Sao Paulo State University


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Surgical wound

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: Egypt: Alexandria

ncbi_submitter: University of East Anglia


ncbi_country: China: Jiangsu

ncbi_submitter: Yangzhou University


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Bartonella sp. AP36NXGY

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Pseudodonghicola xiamenensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: koumiss

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Inner Mongolia Agricultural Univercity


ncbi_organism_name: uncultured Agathobaculum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Italy

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Fusicatenibacter sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EBI


ncbi_isolation_source: seawater off the coast of Georgia

ncbi_organism_name: Roseobacter sp. GAI101

ncbi_submitter: Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_isolation_source: arid environmental sample

ncbi_organism_name: Bacillus sp. M21

ncbi_submitter: Georg-August-University Goettingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. M21


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Shewanella sp. 10N.286.52.C2

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: AR

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Malaysia: Cameron Highlan

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Malaysian Agricultural Research And Development Institute


ncbi_country: France

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: U.S. Food and Drug Administration


ncbi_country: China: Liaoning province

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Germany

ncbi_isolation_source: Bronchial secretions/BAL

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Flavobacterium sp. Root935

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;s__Candidatus Jorgensenbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_54_38


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolate: pure

ncbi_isolation_source: Lake Kulim; Kedah; Malaysia

ncbi_organism_name: Cupriavidus malaysiensis

ncbi_submitter: Universiti Sains Malaysia


ncbi_country: USA: Cleveland; OH

ncbi_isolation_source: Bronchal aveolar lavage fluid mouse #1

ncbi_organism_name: Bordetella pseudohinzii

ncbi_submitter: University of Michigan


ncbi_country: Canada: Guelph

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis cynos

ncbi_submitter: University of Guelph


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Roseinatronobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Bacillus cereus group sp. MYBK249-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK249-1


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_strain_identifiers: EGD

ncbi_submitter: Rowan University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: Rumen uncultured genome RUG13660

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_isolation_source: water: water; running

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_organism_name: Veillonella denticariosi JCM 15641

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Oceanospirillales bacterium TMED91


ncbi_country: USA: Baltimore

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_strain_identifiers: E

ncbi_submitter: University of Maryland


ncbi_country: Australia: Brisbane

ncbi_isolation_source: duodenum

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of Newcastle


ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus sp. SV1

ncbi_submitter: University Hospital Dresden


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Nitrosomonadaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shuozhou

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_country: Turkey: Adana

ncbi_isolation_source: Nursery

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: China

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri Shi06SX36

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)