ncbi_country: Switzerland: Riggisberg (BE)

ncbi_isolation_source: spleen

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_genome_representation: full

ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_assembly_level: Chromosome

ncbi_genome_representation: partial

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter sp. TUM15383

ncbi_submitter: Toho University


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: USA

ncbi_isolation_source: Spine

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: t

ncbi_country: USA: New Jersey; Somerset

ncbi_isolation_source: garden soil

ncbi_organism_name: Actinoplanes rectilineatus

ncbi_refseq_category: reference genome

ncbi_submitter: University of Illinois

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_level: Scaffold

ncbi_country: Pacific Ocean: Mariana trench

ncbi_isolate: LMO Bin11

ncbi_isolation_source: marine sediment; cultured under 152Mpa pressure

ncbi_organism_name: Exiguobacterium alkaliphilum

ncbi_strain_identifiers: LMO Bin11

ncbi_submitter: Shanghai Jiaotong UNI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium alkaliphilum


ncbi_organism_name: Streptomyces sp. NPDC056450

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-b_bin-414

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_strain_identifiers: LT2 KO STM0928

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: freshwater MAG --- B-4_bin-329

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: Tibet

ncbi_isolation_source: Hippophae rhamnoides root soil actinomycetes

ncbi_organism_name: Nocardia sp. XZ_19_369

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_country: Viet Nam: Ho Chi Minh City

ncbi_isolation_source: urethral exudate

ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: PIHCM 20157

ncbi_submitter: Pasteur Institute of Ho Chi Minh City


ncbi_assembly_level: Complete Genome

ncbi_country: India

ncbi_isolation_source: Agricultural field

ncbi_organism_name: Azospirillum argentinense

ncbi_submitter: Banaras Hindu University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-369

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chitinophagales bacterium

ncbi_strain_identifiers: new MAG-369

ncbi_submitter: Micoorganism


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: Intrauterine purulent content

ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal University of Rio Grande do Sul (UFRGS)


ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Russia: Elista

ncbi_isolation_source: water

ncbi_submitter: Russia Research Anti-Plague Institute "Microbe"


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Fermentimonas sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M8

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M8


ncbi_country: Pacific Ocean: Munida Microbial Observatory Time Series

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Planktomarina temperata

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudonocardiaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University


ncbi_country: United Kingdom:Oxford

ncbi_strain_identifiers: H182 MRSA


ncbi_submitter: Christian Medical College


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: Psychrobacter piscatorii

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Hungary: Debrecen

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Debreceni Egyetem


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mucispirillum sp.


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: Kistimonas sp. bin40

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus phoeniculicola ATCC BAA-412

ncbi_strain_identifiers: ATCC BAA-412

ncbi_submitter: Broad Institute


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Xylanibacter rodentium


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Germany: Heiligendamm

ncbi_isolation_source: polyethylene

ncbi_organism_name: Rosistilla carotiformis

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ABFRE

ncbi_submitter: NHGRI/NIH


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Switzerland

ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: Institut d'Investigacio Biomedica Sant Pau


ncbi_country: Australia: Port Phillip Bay

ncbi_submitter: Monash University


ncbi_submitter: Mahidol University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Brocadiaceae bacterium

ncbi_submitter: Biogas Institute of Ministry of Agriculture and Rual Affairs

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__unclassified Candidatus Brocadiaceae;s__Candidatus Brocadiaceae bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Flavobacterium agrisoli

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Tumebacillus lipolyticus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- AM4_bin-525

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fidelibacterota bacterium UBA2986

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA2986


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: University of Lausanne


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Dysgonomonas gadei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces griseoincarnatus


ncbi_organism_name: Enterococcus italicus

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Lapidilactobacillus mulanensis


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Gemmatimonadota bacterium


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_organism_name: Corynebacterium variabile

ncbi_submitter: Ocean University of China


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Surface seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_country: Saudi Arabia: Thuwal

ncbi_isolation_source: activated sludge and biofilm from membrane bioreactor

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Acinetobacter sp. V115_6

ncbi_submitter: Max Rubner-Institut


ncbi_country: Germany

ncbi_organism_name: Vibrio cincinnatiensis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_country: Netherlands

ncbi_isolation_source: leaves

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Groningen


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_isolation_source: tracheal secretion

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_assembly_name: freshwater MAG --- AM-2014-D8_bin-0067

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: USA: Chicago; Illinois

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Pontibacterium sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_country: Turkey: Malatya

ncbi_organism_name: Micromonospora sp. RHAY321

ncbi_submitter: Ondokuz Mayis University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Tenacibaculum dicentrarchi

ncbi_submitter: Universidad Andres Bello


ncbi_isolate: Faeces

ncbi_submitter: UMR 1137 IAME


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: wastewater

ncbi_organism_name: Nocardioides daeguensis

ncbi_submitter: China CDC


ncbi_organism_name: Pseudomonas sp. UBA6718

ncbi_submitter: University of Queensland


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S16

ncbi_organism_name: Gordonibacter pamelaeae

ncbi_submitter: University of Calgary


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium perfringens NCTC 8239

ncbi_strain_identifiers: str. NCTC 8239

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Australia: New South Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Spain

ncbi_isolation_source: pork meat

ncbi_organism_name: Arcobacter suis

ncbi_submitter: Universitat Rovira i Virgili


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Bacillus sp. FSL M8-0077

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL M8-0077


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Alicyclobacillus sp.

ncbi_submitter: University of British Columbia


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Second Affiliated Hospial of Zhejiang University, School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Escherichia sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.


ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudorhizobium tarimense

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Acinetobacter johnsonii


ncbi_country: Norway: Bergen

ncbi_isolation_source: eye

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Zoogloeaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: wenzhou medical university


ncbi_country: Canada: L Assomption

ncbi_isolation_source: sandy soil contaminated with hydrocarbons for 50 years

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Pseudoalteromonas sp. BSi20439


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_isolation_source: coastal dune

ncbi_organism_name: Pedobacter sp. V48

ncbi_submitter: University of Massachusetts Dartmouth


ncbi_isolation_source: metagenome

ncbi_organism_name: Brevibacillus parabrevis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: University of Chicago


ncbi_country: Denmark: Ansager

ncbi_isolation_source: uterus

ncbi_submitter: Copenhagen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus;x__Streptococcus equi subsp. zooepidemicus Sz105


ncbi_organism_name: Serratia marcescens

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 215

ncbi_submitter: SC


ncbi_organism_name: uncultured Thermodesulfovibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Agrobacterium sp. 22117

ncbi_submitter: Yantai University


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Synechococcus sp. SB0669_bin_8

ncbi_submitter: University of Queensland


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Serbia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Kentucky

ncbi_submitter: Institute for Molecular Genetics and Genetic Engineering


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0254

ncbi_submitter: Broad Institute


ncbi_country: USA: IN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: duck

ncbi_organism_name: Staphylococcus sp. MZ1

ncbi_submitter: Henan Agricultural University


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: CAU


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Philippines: Bagiuo City

ncbi_isolation_source: soil

ncbi_organism_name: Kitasatospora sp. A2-31

ncbi_submitter: University of Warwick


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_country: Australia

ncbi_isolation_source: Troups Creek Wetland

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Monash University


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: XCF

ncbi_submitter: Enze Hospital


ncbi_organism_name: Vampirovibrionales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Ectopseudomonas hydrolytica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces olivaceus


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Promethearchaeota archaeon

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_name: freshwater MAG --- Ja_bin-5366

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: United Kingdom: London

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Modernising Medical Microbiology


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Turku


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Danny from private home

ncbi_organism_name: Faecalimonas sp.

ncbi_submitter: AnimalBiome


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: China: Yangjiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Clostridium sp.


ncbi_country: Japan: Tokyo Bay

ncbi_isolation_source: seawater

ncbi_organism_name: Aliivibrio sifiae

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_country: Belarus: Minsk

ncbi_isolation_source: water from a container for water evaporation

ncbi_organism_name: Dietzia kunjamensis

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin N2.43

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_strain_identifiers: bin N2.43

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Vidalia Region; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Algeria

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: LokiAmp MDA-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Pseudohongiella sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: patient

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Australia: Brisbane

ncbi_isolation_source: ear

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Streptomyces rimosus subsp. rimosus

ncbi_strain_identifiers: NRRL WC-3904

ncbi_submitter: University of Illinois


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Columbia River coastal margin; salinty 33

ncbi_organism_name: Alphaproteobacteria bacterium UBA3447

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Cloacibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Stanford University


ncbi_country: India: Dyapalapura; Hassan district; Karnataka

ncbi_isolation_source: Watering trough

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium HUM_1


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Aquirufa sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: Belgium

ncbi_isolation_source: Schelde River

ncbi_organism_name: Burkholderia multivorans R-20526

ncbi_submitter: LM-UGent


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Pseudomonas fulva


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Olsenella avicola

ncbi_submitter: Quadram Institutte


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Hohai university


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_isolation_source: soil

ncbi_organism_name: Azotobacter vinelandii

ncbi_strain_identifiers: AEIV

ncbi_submitter: Biotechnology Institute of UNAM


ncbi_country: Brazil: Parana

ncbi_organism_name: Acinetobacter colistiniresistens

ncbi_strain_identifiers: DL

ncbi_submitter: Universidade Estadual de Londrina


ncbi_country: USA: California; Eel River; Elder Creek

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: Ileo-caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: Tder

ncbi_organism_name: Sodalis sp. (in: enterobacteria)

ncbi_strain_identifiers: Tder

ncbi_submitter: Max Planck Institute for Chemical Ecology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Bruguierivoracaceae;g__Sodalis;x__unclassified Sodalis (in: enterobacteria);s__Sodalis sp. (in: enterobacteria)


ncbi_organism_name: Moraxella sp. K1664

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: human gut

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli


ncbi_country: Hungary: Budapest

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Semmelweis University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes timonensis

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Corynebacterium kroppenstedtii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Spain

ncbi_isolation_source: Human gut

ncbi_submitter: Hospital Ramon y Cajal


ncbi_assembly_name: freshwater MAG --- Ja_bin-2460

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodocyclaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA

ncbi_isolation_source: aquifer (aquifer; Canoga Park)

ncbi_organism_name: Methylocystis sp. ATCC 49242

ncbi_strain_identifiers: Rockwell

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Italy: Monte San Vito

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZSAM


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Ruegeria conchae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar 48:g,z51:-


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_assembly_name: Rumen uncultured genome RUG281

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_isolation_source: phage resistant culture

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Methylococcus capsulatus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: citrus juice

ncbi_organism_name: Alicyclobacillus suci

ncbi_submitter: Cornell University


ncbi_organism_name: Segatella copri

ncbi_submitter: Stanford University


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Patescibacteria group bacterium UBA4664

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA4664


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_isolate: AOP38_B2_surf _bin _20

ncbi_organism_name: Arachnia sp.

ncbi_strain_identifiers: AOP38_B2_surf _bin _20

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Leisingera aquaemixtae

ncbi_submitter: Shanghai Ocean University


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Campylobacter coli

ncbi_submitter: dtu national food institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Hebei province

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Exiguobacterium chiriqhucha

ncbi_submitter: Kazan (Volga Region) Federal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium chiriqhucha


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: New York City

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Linnaeus University


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: maybe soil

ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: India

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Delhi South Campus


ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Basel

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: ETH Zurich


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: China: Shanghai

ncbi_isolation_source: clinic

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Municipal ceter for disease control & prevention


gtdb_type_species_of_genus: t

ncbi_organism_name: Geochorda subterranea

ncbi_strain_identifiers: LN

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: USA: Arizona

ncbi_organism_name: Caballeronia sp. SL2Y3

ncbi_submitter: University of Texas at Arlington


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Australia: Western

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: µFORGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: BGI-Shenzhen


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Zhejiang University


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Ruminococcaceae bacterium AE2021

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroides xylanisolvens SD CC 1b

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens;x__Bacteroides xylanisolvens SD CC 1b


ncbi_organism_name: Bacillus cereus

ncbi_submitter: National Institute of Horticultural and Herbal Science , Rural Development Administration (RDA)


ncbi_organism_name: Kribbella pratensis

ncbi_strain_identifiers: VKM Ac-2573


ncbi_isolation_source: stool

ncbi_organism_name: Urinicoccus timonensis

ncbi_submitter: URMITE


ncbi_organism_name: Paenibacillus sp. KN14-4R

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Zymomonas mobilis

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_41_9


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Shanghai MasScience Genomics Core

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: EPFL


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_country: Taiwan

ncbi_isolation_source: Meretrix lusoria

ncbi_organism_name: Shewanella algae

ncbi_submitter: National Chung Cheng University


ncbi_country: Colombia: Pereira

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Shigella dysenteriae CDC 74-1112

ncbi_submitter: Virginia Bioinformatics Institute


ncbi_isolation_source: Annelid: Branchellion lobata

ncbi_organism_name: uncultured Rhizobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: Actinomyces oris


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus sp. AFS075960

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS075960


ncbi_country: South Africa

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zoonosis Science Center


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_country: USA: Florida

ncbi_organism_name: Pantoea sp. EA-12

ncbi_submitter: LANGEBIO


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_country: Nepal

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: France: Bretagne

ncbi_organism_name: Xanthomonas hortorum pv. cynarae

ncbi_submitter: INRA

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Myroides indicus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium angulatum

ncbi_submitter: EMG


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: USA: GA

ncbi_isolation_source: salt marsh mud

ncbi_strain_identifiers: DSM 759

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio natriegens;x__Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759


ncbi_isolation_source: not known


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: clinical isolate

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_isolation_source: seafood

ncbi_submitter: Nitte University Centre for Science Education and Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oslo


ncbi_organism_name: bacterium D16-50


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Anhui agricultural university


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: McGill University - Macdonald Campus


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Jiangxi Medical College, Nanchang University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Proteiniclasticum sp.


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: China: Henan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Veillonellaceae bacterium


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Northwestern University


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: USA: California

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: Institute for Sustainable Agriculture - CSIC


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Antarctica

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. PAMC26568

ncbi_submitter: Korea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. PAMC26568


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Alistipes inops


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Canada: Guelph; Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: UCSF


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Georgia


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Genomic Research Laboratory, GRL; Geneva University Hospital, HUG


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Altererythrobacter sp.

ncbi_submitter: EMG


ncbi_country: Pakistan

ncbi_isolation_source: blood

ncbi_submitter: AWKUM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0066

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Toho university


ncbi_country: USA: PA

ncbi_isolation_source: avian lung (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Denmark: Copenhagen

ncbi_submitter: Roskilde University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: California Department of Public Health


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa: Barberton

ncbi_isolation_source: gold particle

ncbi_organism_name: Pseudomonas sp. Fig-3

ncbi_submitter: The University of Adelaide


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_assembly_name: freshwater MAG --- Ja_bin-1517

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom

ncbi_isolation_source: Sinus

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: China: Nanchang; Poyang Lake

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_organism_name: Gloeobacter violaceus PCC 7421

ncbi_submitter: Kazusa


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EBI


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus hominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia: Genting

ncbi_isolation_source: bee gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Instituto Gulbenkian de Ciencia


ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Larissa


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Prevotella sp. CAG:485

ncbi_submitter: DTU


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: GS De Novo

ncbi_country: India: Gujarat

ncbi_isolation_source: salt marsh of the Great Rann of Kutch

ncbi_organism_name: Sediminibacillus halophilus NSP9.3

ncbi_submitter: Directorate of Groundnut Research (Indian Council of Agricultural Research)


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Sinomonas atrocyanea

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Succinivibrio sp.


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_strain_identifiers: CNCI 62

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_assembly_name: freshwater MAG --- Ki3-D4_bin-316

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_isolation_source: throat swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux - La Balme-Les Grottes


ncbi_country: Russia: Moscow

ncbi_isolation_source: Lumbar liquor

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; P+N+C amendment

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: University of Montana


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W48969

ncbi_submitter: Broad Institute


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 12 - depth 10m

ncbi_organism_name: Synechococcus sp. REDSEA-S01_B1

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: sediment and polymetallic sulfide from Okinawa hydrothermal vent

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Kluyvera cryocrescens

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Borkfalkia ceftriaxoniphila


ncbi_organism_name: Candidatus Obscuribacter sp.

ncbi_submitter: Xiamen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;x__unclassified Candidatus Obscuribacter;s__Candidatus Obscuribacter sp.


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Peribacillus sp. TH16

ncbi_submitter: University of Alaska Fairbanks


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;x__environmental samples;s__uncultured Candidatus Midichloriaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC056132


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-1840

ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: BILS


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-325-E13

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Denmark: Randers

ncbi_isolation_source: activated sludge from Rand_18-Q3-R56-63

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: Aalborg University


ncbi_organism_name: Thermoleophilaceae bacterium


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Alexander


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Japan: a mountainous area of Nagano Prefecture

ncbi_isolation_source: gut of grasshopper

ncbi_organism_name: Companilactobacillus metriopterae

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Center for Laboratory Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China:Liucheng city of Guangxi province

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: South china agriculture university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AF25-5LB

ncbi_submitter: BGI


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: Blood culture

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Pennsylvania


ncbi_assembly_name: DUJ

ncbi_country: USA: WA

ncbi_isolation_source: soil from a compost facility at Washington State University

ncbi_organism_name: Geobacillus sp. WSUCF1

ncbi_submitter: South Dakota School of Mines and Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Deinococcus sp.

ncbi_submitter: EPFL


ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Rahnella inusitata

ncbi_submitter: EMG


ncbi_organism_name: Massilia sp. LMS1-1-1.1

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_organism_name: Paraburkholderia graminis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Poland

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: nankai university


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Desulfobacteraceae bacterium UBA5746

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: United Kingdom: London

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Modernising Medical Microbiology


ncbi_assembly_name: Rumen uncultured genome RUG10018

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Rennes

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: BGI-Shenzhen


ncbi_country: China

ncbi_isolation_source: Poplar canker

ncbi_organism_name: Snodgrassella sp. CFCC 13594

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_country: Australia: Brisbane

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: The University of Queensland


ncbi_country: Israel

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: USA: Midwest

ncbi_organism_name: Francisella orientalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Hengyang

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_organism_name: Mycolicibacterium hippocampi

ncbi_submitter: Xiamen University


ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: China: Central China Fuwai Hospital of Zhengzhou University

ncbi_isolation_source: Sputum from patient from comprehensive intensive care unit

ncbi_submitter: YangZhou university


ncbi_isolation_source: Colon

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Flavobacterium sp. ALD4

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: China: Nanjing

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jiangsu Provincial Center for Disease Prevention and Control,China


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: University of Galway

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: South Africa: KwaZulu-Natal

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Longimicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Brazil

ncbi_submitter: LNCC


ncbi_submitter: Institute for Medical Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_assembly_name: IMG-taxon 2681812808 annotated assembly

ncbi_organism_name: Aromatoleum tolulyticum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Juntendo University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Institut Pasteur


ncbi_assembly_name: freshwater MAG --- I3b_bin-322

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Herminiimonas aquatilis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: potato plant root soil

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Antonio Narino


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Zurich


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_isolate: Clinical

ncbi_isolation_source: Cough swab

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Clinical

ncbi_submitter: newcastle university


ncbi_organism_name: Stenotrophomonas sp. 1337

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Micromonospora zamorensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Queensland


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Oklahoma


ncbi_country: Italy: Foggia

ncbi_isolation_source: Hospital setting

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Foggia


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0304816.2

ncbi_submitter: IGS


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: NRRL B-4386

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Fodinibius sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus sp. JJ1122

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JJ1122


ncbi_country: Russia: Sakhalin Island; Daginsky hot springs field

ncbi_isolation_source: water and sediment collected from a small swamp

ncbi_organism_name: Neomoorella sulfitireducens

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: foot pus

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_country: Germany

ncbi_isolation_source: Shrimps

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Brazil: Petrolina

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_country: South Korea

ncbi_isolation_source: traditional youghurt

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Chonbuk national university, South korea


ncbi_assembly_name: Assembly 1

ncbi_organism_name: Campylobacter jejuni 20176

ncbi_submitter: university of exeter


ncbi_organism_name: Hallella multisaccharivorax DSM 17128

ncbi_submitter: Advanced Analysis Center, National Agriculture and Food Research Organization

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Hallella;s__Hallella multisaccharivorax;x__Hallella multisaccharivorax DSM 17128


ncbi_isolation_source: kefir

ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: SysMilk


ncbi_country: USA: California; Middletown

ncbi_organism_name: Candidatus Yonathbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yonathiibacteriota;x__unclassified Candidatus Yonathbacteria;s__Candidatus Yonathbacteria bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Candidatus Rifleibacteriota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rifleibacteriota;x__unclassified Candidatus Rifleibacteriota;s__Candidatus Rifleibacteriota bacterium


ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Australia: Monaro; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_country: USA: California; The Cedars highly alkaline spring

ncbi_isolation_source: serpentinized groundwater

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_country: USA: Florida

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Florida


ncbi_country: China: Central China Fuwai Hospital of Zhengzhou University

ncbi_isolation_source: Sputum from patient

ncbi_submitter: YangZhou university


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Palmer LTER


ncbi_isolation_source: faeces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Quadram Bioscience Institute


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Portland State University


ncbi_country: India

ncbi_isolation_source: fish intestine

ncbi_submitter: Christian Medical College


ncbi_country: Pakistan: Balochistan

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_organism_name: Cnuibacter physcomitrellae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Iceland: Mulakvisl; Kotlujokull Glacier

ncbi_isolation_source: sulfate amended sediment enrichment culture

ncbi_organism_name: Phycicoccus sp.

ncbi_submitter: Montana State University


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Utah


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Switzerland

ncbi_isolation_source: environmental swab veterinary clinic

ncbi_organism_name: Enterobacter sp. MV-x1-C

ncbi_submitter: University of Zurich


ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0409

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Asaia krungthepensis

ncbi_strain_identifiers: TBRC 475

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0415R

ncbi_submitter: Broad Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: CRC RESIST


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Gloeomargarita sp. SKYG116

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Sphingomonas faeni

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Streptococcus peroris

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: uncultured Allomuricauda sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Gallionella sp.

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Halanaerobiales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ireland: Cork

ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: University College Cork


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Spain

ncbi_organism_name: Gelidibacter mesophilus DSM 14095

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter;s__Gelidibacter mesophilus;x__Gelidibacter mesophilus DSM 14095


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Australia: Queensland; Cairns

ncbi_isolation_source: laboratory culture of host individuals collected from Cairns; Australia in 2014

ncbi_organism_name: Wolbachia endosymbiont of Aedes aegypti

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Vibrio sp. B1-2

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: bone

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Cognaticolwellia mytili

ncbi_submitter: Third Institute Of Oceanography,State Oceanic Administration


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0175

ncbi_strain_identifiers: VAN 342

ncbi_submitter: Broad Institute


ncbi_country: Israel

ncbi_isolation_source: water

ncbi_organism_name: Bacillus thuringiensis


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Canada: Calgary

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Calgary


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Center for Microbial Communities


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Loigolactobacillus coryniformis

ncbi_submitter: World Institute of Kimchi


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: University of Copenhagen


ncbi_country: USA: MD

ncbi_organism_name: Aeromonas sp. FDAARGOS 1407

ncbi_strain_identifiers: FDAARGOS 1407

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacilli bacterium