ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Selenomonas sp.


ncbi_country: South Korea: Yellow Sea coast

ncbi_isolation_source: sediment

ncbi_organism_name: Roseovarius aestuarii

ncbi_refseq_category: reference genome

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources

ncbi_type_material_designation: assembly from type material


gtdb_representative: f

gtdb_type_species_of_genus: t

ncbi_assembly_level: Scaffold

ncbi_organism_name: Pseudobacter ginsenosidimutans

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Trichodesmium sp. MO_231.B1

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: hydrothermal vent fluid

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Bordetella tumbae

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Bartonella rochalimae

ncbi_submitter: Instituto Nacional de Salud


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Helicobacteraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC058469

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: human gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Acetivibrionales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_country: India: Hyderabad

ncbi_organism_name: Streptomyces sp. FB2

ncbi_submitter: Indian Agricultural Research Institute


ncbi_country: Switzerland

ncbi_isolation_source: Poultry meat

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cyanobacteria bacterium J06582_2

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06582_2


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Leptolyngbya sp. NIES-3755

ncbi_submitter: Toyohashi University of Technology


ncbi_country: USA: IA

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;s__Candidatus Portnoybacteria bacterium CG_4_10_14_0_2_um_filter_39_11


ncbi_country: Antarctica

ncbi_organism_name: Pseudonocardia alni

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Jersey

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: Cuba: Santa Cruz del Norte

ncbi_isolation_source: Cloacal sample

ncbi_submitter: University of Bern


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M67290

ncbi_submitter: Broad Institute


ncbi_isolation_source: honeybee metagenome

ncbi_submitter: EMG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Denmark

ncbi_isolation_source: feces

ncbi_submitter: Hvidovre Hospital - University of Copenhagen


ncbi_country: Canada: Alberta

ncbi_submitter: Government of Alberta


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli IS25

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Drancourtella sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: South Carolina

ncbi_isolation_source: pharyngeal mucosa

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: CWTS 5

ncbi_submitter: Uka Tarsadia University, Bardoli, India


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPLOWO2_01_FULL_41_33


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Frondihabitans sp. PAMC 28766

ncbi_submitter: Korea Polar Research Institute


ncbi_country: India: Gujarat

ncbi_isolation_source: buffalo rumen fluid

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Saurashtra University


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_isolation_source: screen

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang University


ncbi_country: Colombia:Valle del Cauca;Bahia Malaga

ncbi_isolation_source: mud

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universidad de los Andes


ncbi_isolation_source: cerebrospinal fluid and blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: Thailand

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Luteimonas sp. 22616

ncbi_submitter: Yantai University


ncbi_isolation_source: urine sample

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Center for Disease Control and Prevention of PLA


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Calgary


ncbi_submitter: Center for Microbial Communities


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: sputum of child cystic fibrosis patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Hoyosella rhizosphaerae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Iamiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gordonia sp. SND2

ncbi_submitter: Langfang Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. SND2


ncbi_country: Canada

ncbi_isolation_source: Throat

ncbi_organism_name: Cedecea lapagei

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EBI


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Christian Medical college, Vellore


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: University of Alberta


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine environment

ncbi_organism_name: Synechococcus sp. A15-62

ncbi_submitter: Station Biologique de Roscoff (CNRS - Sorbonne University)


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_country: New Zealand: Waikato

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_country: USA

ncbi_organism_name: Akkermansia muciniphila

ncbi_strain_identifiers: OB21 FAA NB 28

ncbi_submitter: Zymo Research Corporation


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: fermented soybean meal

ncbi_organism_name: Companilactobacillus formosensis

ncbi_submitter: Hubei University of Arts and Science


ncbi_country: USA: WA

ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Washington


ncbi_assembly_level: Chromosome

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universidade Federal de Pelotas


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NY

ncbi_isolation_source: feces goose branta

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Boston

ncbi_isolation_source: Wound - deep sinus

ncbi_organism_name: Klebsiella pneumoniae MGH 73

ncbi_strain_identifiers: MGH 73

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MGH 73


ncbi_country: USA: PA

ncbi_isolation_source: porcine pleural cavity


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_organism_name: Pirellula sp.

ncbi_submitter: Rutgers University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Thermoflexus hugenholtzii JAD2

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Leuconostoc lactis


ncbi_country: Spain

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National University of Singapore (NUS)


ncbi_country: China: Fujian

ncbi_organism_name: Brucella anthropi

ncbi_submitter: Nanjing Normal University


ncbi_organism_name: Candidatus Methylomirabilis sp. bin48

ncbi_submitter: Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;x__unclassified Candidatus Methylomirabilis;s__Candidatus Methylomirabilis sp. bin48


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Center of Scientific Excellence for Influenza Viruses, National Research Centre (NRC), Egypt


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli Xuzhou21

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Indonesia: Jakarta; Java

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira kirschneri;x__Leptospira kirschneri serovar Cynopteri;x__Leptospira kirschneri serovar Cynopteri str. 3522 CT


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Brucella abortus 2308

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain: Salamanca

ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: Universidad de Salamanca


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Spain: Tenerife; Canary Island

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. SSUT18

ncbi_submitter: Universidad de La Laguna


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_country: Austria

ncbi_organism_name: Anaplasma phagocytophilum str. ApNP

ncbi_strain_identifiers: ApNP

ncbi_submitter: IGS


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: North West University


ncbi_organism_name: Prevotella sp. Sow4_E9_plate

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stony Brook University


ncbi_submitter: Kansas State University


ncbi_isolation_source: cold seep

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_submitter: CHUV-UNIL

ncbi_taxonomy: d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Candidatus Criblamydiaceae;g__Candidatus Criblamydia;s__Candidatus Criblamydia sequanensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Candidatus Criblamydiaceae;g__Candidatus Criblamydia;s__Candidatus Criblamydia sequanensis;x__Candidatus Criblamydia sequanensis CRIB-18


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_organism_name: Bacillota bacterium


ncbi_country: India: Great Rann of Kutch; Gujarat

ncbi_isolation_source: salt marsh

ncbi_organism_name: Bacillus sp. NSP22.2

ncbi_submitter: Directorate of Groundnut Research (Indian Council of Agricultural Research)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. NSP22.2


ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China: Shenzhen; Longhua

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Clostridium tetanomorphum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Sneathiellales bacterium

ncbi_submitter: University of Konstanz


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: terrestrial

ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: United Kingdom


ncbi_country: Tanzania

ncbi_isolation_source: Nasal


ncbi_organism_name: Commensalibacter communis

ncbi_submitter: ghent university


ncbi_country: Brazil

ncbi_isolation_source: Mesenteric Lymph Node

ncbi_submitter: Sao Paulo State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,12:i:-


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Lung

ncbi_organism_name: Legionella pneumophila


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Streptomyces hirsutus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas tohonis

ncbi_submitter: Chinese Academy of Agricultural Sciences, Institute of Plant Protection


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10063

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: South Korea: Seoul

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yonsei University


ncbi_organism_name: Raoultella ornithinolytica

ncbi_strain_identifiers: Ngtc RS 29

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Thioalkalivibrio sp. ALE31

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp. NPDC058440


ncbi_country: USA: TX

ncbi_isolation_source: feces psittacine

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: South Africa

ncbi_isolation_source: Blood

ncbi_submitter: WTSI


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: termite

ncbi_organism_name: Terrisporobacter mayombei

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Treponema pallidum

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Bacillus sp. LS15-K4

ncbi_submitter: Gujarat Biotechnology University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. LS15-K4


ncbi_country: USA: NY

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: pecked egg organ

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: cold seep

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: nasopharynx


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Thalassococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_country: Pacific Ocean

ncbi_isolation_source: Deep seawater

ncbi_organism_name: Alteromonas lipotrueiana

ncbi_submitter: Mediterranean Institute for Advanced Studies (IMEDEA)


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Russia: Shulgan-Tash cave; Bashkiria

ncbi_isolation_source: fouling of walls

ncbi_organism_name: Rhizobium sp. RCAM05350

ncbi_submitter: ARRIAM


ncbi_assembly_name: Rumen uncultured genome RUG838

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_organism_name: Streptomyces sp. NPDC102405

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Pseudomonas sp. URMO17WK12:I11

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: diseased fish

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Laboratory of Genome Science, Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-0182

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Salmonella sp. C3198

ncbi_submitter: Sichuan University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_submitter: Ural Scientific Research Institute of Maternity and Child Care


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: University of British Columbia


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: CSIR-Centre for Cellular and Molecular Biology


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_assembly_name: Rumen uncultured genome RUG651

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Cuneatibacter sp.


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Mexico

ncbi_isolation_source: cucumber

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: uncultured Christensenella sp.


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: CA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Brevundimonas nasdae

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA: DE

ncbi_isolation_source: environment


ncbi_country: Czech Republic: Moravia

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Wolbachia endosymbiont of Drosophila willistoni

ncbi_submitter: UC Santa Cruz


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Staphylococcus aureus W13012_022013

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Princeton University


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Bacillus sp. YIM B13423

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13423


ncbi_organism_name: Clostridium butyricum


ncbi_country: USA: Boulder; CO

ncbi_submitter: Inscripta


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: China Agricultural University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Australia: Melbourne

ncbi_isolation_source: modified atmosphere packaged lamb

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: CSIRO Agriculture and Food


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Oxford


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis CTRI-2

ncbi_submitter: Research Institute for Physical-Chemical Medicine, Moscow, Russia


ncbi_country: USA: Colorado;Grand_Junction

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Wohlfahrtiimonas sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: kapchunka dried salted whitefish

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Bureau of Food Surveillance and Science Integration


ncbi_organism_name: Jeotgalicoccus aerolatus

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Mycetohabitans endofungorum

ncbi_submitter: Cornell University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG14467

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_country: South Korea: Gangwon-do; Yeongwol

ncbi_isolation_source: soil

ncbi_organism_name: Agrilutibacter solisilvae

ncbi_submitter: Chung-Ang University


ncbi_country: Uganda: Hoima

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Lake Washington

ncbi_organism_name: Flavobacterium sp. 90

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Candidatus Peribacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: United Kingdom: Esthwaite Water

ncbi_isolation_source: Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water

ncbi_organism_name: Burkholderiales bacterium PBB2

ncbi_submitter: CNRS-AMU


ncbi_organism_name: uncultured Cohaesibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7216

ncbi_submitter: University of Queensland


ncbi_country: USA: Ohio

ncbi_isolation_source: intra-abdominal

ncbi_submitter: JCVI


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_isolation_source: rice seeds

ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: China National Rice Research Institute


ncbi_organism_name: Capnocytophaga leadbetteri

ncbi_submitter: EMG


ncbi_country: USA: North Carolina

ncbi_isolation_source: Mouse stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Michigan


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Haemophilus parainfluenzae


ncbi_country: United Kingdom: Hatchlands

ncbi_isolation_source: Oak rhizosphere soil

ncbi_organism_name: Dryocola boscaweniae

ncbi_submitter: UWE


ncbi_country: China

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Streptomyces sp. T028

ncbi_submitter: Zhongshan Institute for Drug Discovery, Shanghai Institute of Materia Medica


ncbi_country: Uganda

ncbi_organism_name: Mycobacterium tuberculosis UT0054

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG11176

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Streptomyces atrovirens

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Providencia sp. PROV082

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Colwellia sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_submitter: Shanghai Municipal Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rissen


ncbi_organism_name: Bartonella sp. MM100QHHN

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_assembly_name: freshwater MAG --- Erken-D7_bin-0444

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01700

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01700


ncbi_isolation_source: Faeces

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Nostoc sp. UHCC 0251

ncbi_strain_identifiers: UHCC 0251

ncbi_submitter: Universidade de Sao Paulo, Sao Paulo, Brazil

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;s__Nostoc sp. UHCC 0251


ncbi_submitter: Yonsei University


ncbi_country: China: Ili; Xinjiang

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: rectal

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Microbacterium enclense

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: GA

ncbi_isolation_source: forest

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Ghana

ncbi_isolation_source: fish

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Australia: Melbourne

ncbi_isolation_source: respiratory

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Modicisalibacter luteus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: South Dakota

ncbi_isolation_source: Intestinal content

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: South Dakota State University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: Candidatus Nitrospira sp. ZN2

ncbi_organism_name: Nitrospira defluvii

ncbi_strain_identifiers: Candidatus Nitrospira sp. ZN2

ncbi_submitter: EAST CHINA NORMAL UNIVERSITY


ncbi_country: Pacific Ocean: North Pacific

ncbi_isolation_source: Seaweed

ncbi_organism_name: Pseudoalteromonas rubra

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000951


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_country: Australia: Perth

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Lepagella muris

ncbi_submitter: University of Toronto


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: MAMI


ncbi_country: Japan: Kyoto

ncbi_isolation_source: Venous blood isolated from host

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Microbiology, Graduate School of Medicine, Kyoto University


ncbi_country: China

ncbi_isolation_source: Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_isolation_source: other

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_country: Italy

ncbi_submitter: University of Bologna


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Treponema denticola MYR-T

ncbi_strain_identifiers: MYR-T

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Streptomyces sp. NPDC006261

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Baylor College of Medicine


ncbi_country: Brazil: Parana

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: Universidade Federal do Parana (UFPR)


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Micromonospora trifolii

ncbi_submitter: University of Liege


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cb034

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Colombia: Uraba

ncbi_isolation_source: Phyllosphere of Musa spp. AAA cv. Grand Naine. Leaf number 10

ncbi_organism_name: Bacillus tequilensis

ncbi_submitter: Augura


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea: Anseong

ncbi_isolation_source: soil

ncbi_organism_name: Ramlibacter alkalitolerans

ncbi_submitter: Dongguk University


ncbi_organism_name: Bacillus sp. BA3

ncbi_submitter: INAIL-Research Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BA3


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Brevibacterium intestinavium

ncbi_submitter: Quadram Institutte


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Glaciecola sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Streptomyces bobili

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Korea Polar Research Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Colombia: Narino

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Narino


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0979

ncbi_submitter: Broad Institute


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Spain

ncbi_isolation_source: Medical

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Investigacion Sanitaria y Biomedica de Alicante


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Alberta

ncbi_isolation_source: clinical sample

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: USA: Florida

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. ATUFL_F2_KS9A

ncbi_submitter: Emory University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Yunnan

ncbi_isolation_source: hot spring

ncbi_strain_identifiers: SYSU GA16107

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;x__unclassified Porphyromonadaceae;s__Porphyromonadaceae bacterium SYSU GA16107


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with potato starch

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sphingobacterium multivorum

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: uncultured Actinomycetota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: FDA Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: uncultured Campylobacterales bacterium


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Moline; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Succiniclasticum sp.

ncbi_submitter: EBI


ncbi_country: China: Shihezi;Xinjiang

ncbi_isolation_source: Frozen chicken breast meat from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Corynebacterium aurimucosum ATCC 700975

ncbi_submitter: BGI


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: urine

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 65

ncbi_strain_identifiers: CHS 65

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 65


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Mycolicibacterium thermoresistibile ATCC 19527

ncbi_submitter: Texas A&M University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Lautropia mirabilis


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacillales bacterium UBA3853

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hungary: Budapest

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Semmelweis University


ncbi_country: Poland: Warsaw

ncbi_isolation_source: bronchial washing

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: Forschungszentrum Borstel, Germany


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Technische Universiteit Delft


ncbi_country: Costa Rica

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Germany: Bremen; pond; freshwater sediment

ncbi_isolation_source: autotrophic NRFeOx enrichment culture BP inoculated with freshwater sediment

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: University of Tuebingen


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Mameliella sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: IL

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Italy

ncbi_isolation_source: Gastronomic preparations

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_country: China: Pu er; Yunnan Province

ncbi_organism_name: Microvirga puerhi

ncbi_submitter: Beijing University of Chemical Technology


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii


ncbi_assembly_name: Rumen uncultured genome RUG095

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute for Communicable Disease


ncbi_country: New Zealand: Southern

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_country: China: Weihai

ncbi_isolation_source: sediment of holothurian pond

ncbi_organism_name: Halalkalibacillus sediminis

ncbi_submitter: Shandong University at Weihai


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Poland

ncbi_isolation_source: stem

ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: University of Gdansk, Intercollegiate Faculty of Biotechnology UG&MUG


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Taipei Medical University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Botrimarina sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Listeria cossartiae subsp. cayugensis

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cayugensis


ncbi_organism_name: Mycolicibacterium pulveris

ncbi_submitter: Egerton Dairy Dept


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Rumen uncultured genome RUG11788

ncbi_isolation_source: cattle rumen


ncbi_isolation_source: Cattle Hide

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD7886

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Japan: Izu; Shizuoka Prefecture

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis BCT-7112

ncbi_submitter: RUBINUM, S.A.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus toyonensis;x__Bacillus toyonensis BCT-7112


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: microbial mat

ncbi_organism_name: Nostocales cyanobacterium PMM_0069

ncbi_submitter: University of Liege


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: University of Pittsburgh


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Australia: New South Wales

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: Colorado State U


ncbi_organism_name: Aeromonas sp. 601019

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: salami paste production

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;x__unclassified Prevotella;s__Prevotella sp. oral taxon 472;x__Prevotella sp. oral taxon 472 str. F0295


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_country: Spain: Galicia

ncbi_organism_name: Tenacibaculum gallaicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Region Zealand


ncbi_country: Saudi Arabia:Medina

ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: India: Kolkata

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Chengdu

ncbi_isolation_source: Pork meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: bloodstream

ncbi_submitter: The 6th Affiliated Hospital of Shenzhen University Health Center


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: EMG


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Klebsiella electrica

ncbi_submitter: University of Wyoming


ncbi_submitter: McGill University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Actinotignum sp. GS-2025d

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Aquipuribacter sp. MA13-13

ncbi_submitter: Zunyi Medical University


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: TX

ncbi_isolation_source: soil

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: MOX A

ncbi_isolation_source: methanogen symbiont from mussel gill epithellium

ncbi_strain_identifiers: MOX A

ncbi_submitter: CRC 1182 Origin and Function of Metaorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__Bathymodiolus brooksi methanotrophic gill symbiont


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: freshwater lake; 40-80 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: UIUC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED05

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED05


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Croatia: Rogoznica; Dragon s Eye Lake

ncbi_isolation_source: seawater lake chemocline

ncbi_organism_name: Halochromatium sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer N sample 29 PSU in greater than .8 micron size fraction

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Malaysia: Kampung Trombol area of Kuching; Sarawak

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Streptomyces sp. MUM 203J

ncbi_strain_identifiers: MUM 203J

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin28

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MOJ bin28

ncbi_submitter: Monash University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital,School of Medicine,Zhejiang University


ncbi_country: Pakistan

ncbi_isolation_source: rhizospheric soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: NIBGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Heihe; Heilongjiang

ncbi_organism_name: Bradyrhizobium viridifuturi

ncbi_submitter: The Chinese University of Hong Kong


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus cremoris;sb__Lactococcus cremoris subsp. cremoris;x__Lactococcus cremoris subsp. cremoris A76


ncbi_country: Germany

ncbi_organism_name: Corynebacterium silvaticum

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_country: China: Hainan Island

ncbi_organism_name: Prosthecochloris sp. SCSIO W1101

ncbi_strain_identifiers: SCSIO W1101

ncbi_submitter: South China Sea Institute of Oceanology,Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;f__Chlorobiaceae;g__Prosthecochloris;x__unclassified Prosthecochloris;s__Prosthecochloris sp. SCSIO W1101


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: Serratia marcescens SL267

ncbi_submitter: Department of Microbiology, Juntendo University


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 6 days

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Shantou University


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptomyces sp. NPDC005507

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: Luxembourg: Belvaux

ncbi_isolation_source: bioreactor

ncbi_organism_name: Bacteroidales bacterium UBA4188

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4188


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: toe wound

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: intestinal content

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: ChinaCDC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Azonexus sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: SEMIA 4016

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Geobacter sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI


ncbi_isolation_source: terrestrial

ncbi_organism_name: Sphingobacterium sp.


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_strain_identifiers: ATCC BAA-1705

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: uncultured Alcaligenaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Boston College


ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia

ncbi_isolation_source: Clinical Lab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: La Trobe University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_organism_name: uncultured Arenimonas sp.


ncbi_organism_name: Roseiarcus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Luzhou

ncbi_isolation_source: endotracheal tube

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: potato

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: University of Maine


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Groin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Denmark

ncbi_isolation_source: clinical

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Tetragenococcus koreensis

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_name: IMG-taxon 2603880220 annotated assembly

ncbi_organism_name: Paenibacillus sp. 276b

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: [Eubacterium] saphenum

ncbi_submitter: EMG


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Microgenomates bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Candidatus Microgenomates;s__Candidatus Microgenomates bacterium


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola plebeius


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_organism_name: Acetatifactor sp.


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: actinobacterium SCGC AAA028-A23

ncbi_strain_identifiers: SCGC AAA028-A23

ncbi_submitter: JGI


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Sorangium sp. So ce861

ncbi_strain_identifiers: So ce861

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce861


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: AOP35_05H_surf _bin _30

ncbi_strain_identifiers: AOP35_05H_surf _bin _30

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;s__Candidatus Jorgensenbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_54_14


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human stool

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Buchananbacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Buchananiibacteriota;x__unclassified Candidatus Buchananbacteria;s__Candidatus Buchananbacteria bacterium


ncbi_organism_name: uncultured Gaiellales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Nomada rufipes


ncbi_country: Botswana

ncbi_isolation_source: nasal swab from healthy carrier

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Tennessee


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Desulfosoma sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: EMG


ncbi_isolation_source: water from Soesokkak

ncbi_organism_name: Pseudooctadecabacter jejudonensis

ncbi_strain_identifiers: CECT 8397

ncbi_submitter: UVEG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: USA: Florida

ncbi_isolation_source: citrus infected tissue

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Citrus Research and Education center, Univerisity of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Belgium

ncbi_isolation_source: Pairi Daiza

ncbi_organism_name: Escherichia marmotae

ncbi_strain_identifiers: mu

ncbi_submitter: Faculty of Veterinary Medicine, Ghent University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Devosiaceae bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: New Zealand: Southern

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: bovine feces

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mishmarhaemek


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Levilactobacillus parabrevis

ncbi_submitter: University of Alberta


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_country: France

ncbi_isolation_source: wheat sourdough

ncbi_organism_name: Pediococcus pentosaceus

ncbi_strain_identifiers: LBAE B20

ncbi_submitter: Brigham Young University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Indonesia: Bali

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_country: Spain: Alicante

ncbi_isolation_source: 0.22 micron fraction from Freshwater Reservoir Amadorio

ncbi_organism_name: Flavobacteriales bacterium UBA952

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__unclassified Flavobacteriales;s__Flavobacteriales bacterium UBA952


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10150

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_strain_identifiers: delta WX-2

ncbi_submitter: Fudan University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Pseudomonas savastanoi pv. glycinea

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. glycinea


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx


ncbi_country: China

ncbi_isolation_source: swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_assembly_name: freshwater MAG --- Umea_bin-02398

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia sp. AF02-12

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oxford


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health