ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Clemson University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_name: Escherichia coli CVM N38795PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N38795PS

ncbi_submitter: FDA


ncbi_assembly_level: Scaffold

ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_submitter: The ithree institute


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Serratia marcescens


ncbi_country: South Korea: Cheongyang

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: POSTECH


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_submitter: University of Washington


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


gtdb_representative: t

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriia bacterium


ncbi_country: Poland: Zielona Gora

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: Bangladesh

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Algeria: Setif

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas sp. OA65

ncbi_submitter: University of Tunis El Manar


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Hellea balneolensis

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: GNS Science


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: Bifidobacterium magnum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: bulk soil from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-B-19

ncbi_submitter: Rothamsted Research


ncbi_country: Portugal

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_country: China: Shenzhen

ncbi_organism_name: Olsenella sp. AF15-43LB

ncbi_submitter: BGI


ncbi_organism_name: Pseudoalteromonas distincta

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptomyces sp. AF1B

ncbi_submitter: Smith College


gtdb_type_species_of_genus: t

ncbi_organism_name: Marinicellulosiphila megalodicopiae

ncbi_refseq_category: reference genome

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Reyranella sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Kasetsart University


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lentisphaeraceae bacterium


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Louis Hospital


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_submitter: University of Iowa


ncbi_country: Brazil: Maues; AM

ncbi_isolation_source: rhizospheric soil from adult guarana trees

ncbi_organism_name: Bacillus paramycoides

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Candidatus Evtepia excrementipullorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;s__Candidatus Evtepia excrementipullorum


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: EMG


ncbi_country: India: Manapad beach

ncbi_organism_name: Verrucomicrobiota bacterium JB023

ncbi_submitter: JNTUH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobiota bacterium JB023


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Smithella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: feces

ncbi_organism_name: Rodentibacter pneumotropicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MN

ncbi_submitter: University of Minnesota


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Halalkalibacter alkalisediminis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_assembly_level: Chromosome

ncbi_organism_name: Lactobacillus jensenii JV-V16

ncbi_submitter: Baylor College of Medicine


ncbi_country: Canada: Lacombe

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Maine

ncbi_isolation_source: hospital patient

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Hubei; Yingcheng

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Massachusetts

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: JSS Academy of Higher Education & Research


ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Mahidol University


ncbi_country: Australia

ncbi_isolate: Water

ncbi_isolation_source: phylogroupE

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: China: Jilin

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: South Africa: Pretoria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Wound Secretion

ncbi_submitter: SC


ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Mogibacterium timidum

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Guinea

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Pelotomaculum sp. UBA3955

ncbi_submitter: University of Queensland


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Urinary Tract Infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_country: France: Montpellier

ncbi_isolation_source: semen

ncbi_organism_name: Veillonella seminalis

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Succinatimonas sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: France

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: L'Oreal


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Prevotella pallens


ncbi_organism_name: Bacteroides xylanisolvens SD CC 2a

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens;x__Bacteroides xylanisolvens SD CC 2a


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University College Cork


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Mesorhizobium sp. M0040

ncbi_submitter: Washington State University


ncbi_assembly_name: freshwater MAG --- MJ120716A_bin-1003

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Zhongshania marina

ncbi_submitter: University of East Anglia


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: University of Calgary


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Holdemanella porci


ncbi_isolation_source: host s whole body

ncbi_organism_name: Candidatus Erwinia haradaeae

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_isolation_source: milk from cattle farm

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: The Animal Disease Control Center of Jilin Province


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 55/2053


ncbi_country: China: Malan

ncbi_organism_name: Janibacter melonis

ncbi_submitter: BGI-Qingdao


ncbi_country: USA: IA

ncbi_isolation_source: grainbin dust

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Escherichia coli Wa2

ncbi_submitter: Department of Pediatrics, Washington University School of Medicine


ncbi_country: Lebanon

ncbi_organism_name: Shigella sp. SHS-7

ncbi_submitter: Lebanese American University


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_organism_name: Streptomyces nitrosporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Rumen uncultured genome RUG620

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Netherlands

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Utrecht University


ncbi_submitter: Center for Microbial Communities


ncbi_country: Indian Ocean

ncbi_isolation_source: pit mud

ncbi_organism_name: Devosia sp. I507

ncbi_submitter: The First Institute of Oceanography,SOA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Alteromonas macleodii


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: Sanmen People's Hospital


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridia bacterium UC5.1-2G4

ncbi_submitter: Laboratory of Metagenomics, Graduate School of Frontier Sciences, The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__unclassified Clostridia;s__Clostridia bacterium UC5.1-2G4


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - thermal hydrolysis pre-treatment sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Shandong University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA4898

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA4898


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;s__Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_02_FULL_41_10


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Portugal: Amadora-Sintra

ncbi_isolation_source: Urinary Tract Infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Streptomyces sp. NPDC029041

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Weissella sagaensis

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Marinomonas sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Factory - Opening

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_01_FULL_43_100


ncbi_isolation_source: fermentation

ncbi_organism_name: Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Umea1_bin-3759

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Caulobacterales bacterium


ncbi_country: China:Xinjiang; Gurbantunggut Desert

ncbi_isolation_source: bulk soil

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: South Africa: Cerebos crystallizer salt ponds in Velddrif; Western Cape

ncbi_isolation_source: Salt crystallizer pond

ncbi_organism_name: Planococcus sp. CP5-4

ncbi_submitter: Institute for Microbial Biotechnology and Metagenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Planococcus;x__unclassified Planococcus (in: firmicutes);s__Planococcus sp. CP5-4


ncbi_organism_name: Bacillus amyloliquefaciens XH7

ncbi_submitter: south china university of technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens;x__Bacillus amyloliquefaciens XH7


ncbi_country: South Korea: Hwaseong

ncbi_organism_name: Xanthomonas citri pv. glycines

ncbi_submitter: National Institute of Crop Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. glycines


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R271;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Antarctica

ncbi_organism_name: Flavobacterium antarcticum DSM 19726

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;s__Flavobacterium antarcticum;x__Flavobacterium antarcticum DSM 19726


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Streptomyces sp. NPDC048484

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: South Korea

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tokyo University of Pharmacy and Life Sciences


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_assembly_name: Rumen uncultured genome RUG13620

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter cinaedi;x__Helicobacter cinaedi CCUG 18818 = ATCC BAA-847


ncbi_isolation_source: Soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: MASSEY UNIVERSITY


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Norway: Bergen

ncbi_isolation_source: synovial fluid

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_strain_identifiers: Fecal samples


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: Russia: Kazan

ncbi_organism_name: Acholeplasma laidlawii

ncbi_submitter: Kazan Institute of Biochemistry and Biophysics KazSC RAS


ncbi_organism_name: Rhabdaerophilum sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Dermabacter hominis

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides heparinolyticus


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Comamonas sp. C11

ncbi_submitter: Northeast Normal University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Klebsiella sp.


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: China: Jiangsu province

ncbi_isolation_source: mouse intestine 0group

ncbi_organism_name: Prevotellaceae bacterium UBA711

ncbi_submitter: University of Queensland


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Dialister invisus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Seafood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA2131

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA2131


ncbi_country: India: Kolkata

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: China: beijing

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: China Agriculatural University


ncbi_country: France: Besancon

ncbi_isolation_source: bronchoalveolar fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: Jordan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_country: China: Liaoning province

ncbi_isolation_source: nasopharyngeal swabs

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Peribacillus sp. FSL K6-1552

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Peribacillus;x__unclassified Peribacillus;s__Peribacillus sp. FSL K6-1552


ncbi_country: Germany: Cologne

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. Soil764

ncbi_submitter: ETH Zurich


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Vibrio chagasii

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_country: Spain: Tous Reservoir; Valencia

ncbi_isolation_source: freshwater biome

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Bacteroides intestinalis


ncbi_country: Argentina: Victoria

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14165

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Eggerthia catenaformis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: uncultured Porticoccaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: AGG 2

ncbi_submitter: ISGlobal


ncbi_organism_name: Bacillus smithii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Salmonella sp. NW983

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: AOP1_A1_surf _bin _17

ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_strain_identifiers: AOP1_A1_surf _bin _17

ncbi_submitter: Genoscope


ncbi_organism_name: Runella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Aeromonas media

ncbi_submitter: Northumbria University


ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Urumqi;Xinjiang

ncbi_isolation_source: Native chicken from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_organism_name: Dehalococcoidia bacterium UBA1327

ncbi_submitter: University of Queensland


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia obeum

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: India: (odisha)

ncbi_isolation_source: sediment

ncbi_organism_name: Halopseudomonas maritima

ncbi_submitter: Institute of Life Sciences


ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: NE-18 Xvh

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: food producing environment surface

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Meiothermus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Pseudomonas sp. JQ170C

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Bolivia

ncbi_isolation_source: cocoa beans rejected by fine cocoa producers

ncbi_submitter: Pennsylvania State University


ncbi_country: China: Jiangsu

ncbi_isolation_source: urine

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Shigella sonnei Ss046

ncbi_submitter: Microbial Genome Center of ChMPH


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13487

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium HGW-Bacteroidetes-1


ncbi_country: South Korea: Seoul

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: EFM 19

ncbi_submitter: Yonsei Medical Center


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: BGI


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG10073

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_isolation_source: seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Deep-Sea Bioresource Research Group , Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Puerto Rico

ncbi_isolation_source: clinical

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Anaerococcus vaginalis

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_assembly_name: Rumen uncultured genome RUG10098

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A1

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Pseudobutyrivibrio sp.

ncbi_submitter: EMG


ncbi_country: Suriname: Nickerie

ncbi_isolation_source: Nose

ncbi_submitter: University Medical Center Groningen


ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Megasphaera sp.


ncbi_country: USA: Connecticut

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Italy

ncbi_isolation_source: broiler

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Jerusalem


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 208

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 1351

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacillus sp. FSL W8-0519

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL W8-0519


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_submitter: Adelaide Medical School


ncbi_country: Russia: Solikamsk; Perm region

ncbi_isolation_source: oil-polluted soil

ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_strain_identifiers: IEGM 1137

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_country: Saudi Arabia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: sediment

ncbi_organism_name: Thiomicrorhabdus xiamenensis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources, People's Republic of China


ncbi_country: USA: Texas; Kleberg County; Upper Laguna Madre

ncbi_isolation_source: bioplastic (PHA) biofilm from water-sediment interface of coastal lagoon

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: USA: NJ

ncbi_organism_name: Bordetella avium

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Huashan Hospitial of Fudan University


ncbi_submitter: Zhejiang University


ncbi_submitter: Christian Medical College


ncbi_country: USA: MA

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_country: USA: Mono Lake; California

ncbi_isolation_source: anoxic mud

ncbi_organism_name: Anaerobacillus arseniciselenatis

ncbi_submitter: University of Manchester


ncbi_country: Syria

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: WCULS

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: caecum

ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: Veterinary Research Institute


ncbi_country: Canada: Buffalo Point; MB

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Yersinia pestis CMCC27002

ncbi_submitter: Beijing Genomics Institute


ncbi_country: USA: Minnesota

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: Australia: Brisbane

ncbi_isolation_source: bioreactor

ncbi_organism_name: Pseudorhodoplanes sp.

ncbi_submitter: Queensland university of technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Norway: Oslo

ncbi_organism_name: Hydrogenophaga sp. IBVHS2

ncbi_submitter: University of Oslo


ncbi_country: USA: Potomac River; Washington; DC

ncbi_isolation_source: river sediment

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Naval Research Laboratory


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Drexel


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Moritella viscosa

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Candidatus Entotheonella sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Tectimicrobiota;c__Candidatus Entotheonellia;o__Candidatus Entotheonellales;f__Candidatus Entotheonellaceae;g__Candidatus Entotheonella;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Candidatus Tectimicrobiota;c__Candidatus Entotheonellia;o__Candidatus Entotheonellales;f__Candidatus Entotheonellaceae;g__Candidatus Entotheonella;x__environmental samples;s__uncultured Candidatus Entotheonella sp.


ncbi_organism_name: Methylorubrum thiocyanatum

ncbi_submitter: Agricultural College and research Institute, Coimbatore


ncbi_organism_name: uncultured Fluviicola sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Christensenellales bacterium


ncbi_country: Antarctica: Mackay Glacier regions; Flatiron

ncbi_isolation_source: mineral soil

ncbi_organism_name: Gemmatimonadota bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial secretions

ncbi_organism_name: Staphylococcus aureus M0728

ncbi_submitter: Broad Institute


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_assembly_name: IMG-taxon 2675903066 annotated assembly

ncbi_organism_name: Nonomuraea maritima

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Holdemania filiformis

ncbi_submitter: EMG


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Israel

ncbi_isolation_source: Dead Sea

ncbi_organism_name: Chromohalobacter israelensis

ncbi_submitter: The Second Institute of Oceanography, State Oceanic Administration


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Linnaeus University


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter junii


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Bacteroides sp. CG01

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: USA:California; The Cedars highly alkaline spring

ncbi_isolation_source: Water

ncbi_organism_name: Serpentinimonas raichei

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;x__unclassified Balneolia;s__Balneolia bacterium


ncbi_assembly_name: freshwater MAG --- Erken-D7_bin-0771

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: joint

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: USDA/ARS/National Animal Disease Center


ncbi_assembly_name: gabuh6507 v01

ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii UH6507


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Muricomes sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: agarose 40-100 m particle (artificial) early colonization

ncbi_organism_name: Poseidonibacter lekithochrous

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Huashan Hospitial of Fudan University


ncbi_country: Russia: Moscow

ncbi_isolation_source: catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Bradyrhizobium sp. RT4a

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Montenegro: Maganik

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: National Technical University of Athens (NTUA)


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Dialister sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Georgenia sp. SUBG003

ncbi_submitter: SaurashtraUniversity


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Anaerolinea sp.

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_country: China: Wenling

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Affiliated Wenling Hospital


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB04-416

ncbi_submitter: Broad Institute


ncbi_country: Switzerland

ncbi_organism_name: Kaistia algarum

ncbi_submitter: University of Neuchatel


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: China: Sichuan

ncbi_submitter: China Aricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Princeton University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Thailand: Phatthalung

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Trichococcus shcherbakoviae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Lebanon;NH

ncbi_isolation_source: Dartmouth Hitchcock Medical Center

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Soochow University


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_isolation_source: Human stool

ncbi_submitter: university of east anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_country: China: Fujian

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: USA: Kansas

ncbi_submitter: University of Guelph


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parazoarcus communis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: VDG


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Ja1_bin-3719

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: BILS


ncbi_country: New Caledonia:Bay of Prony

ncbi_isolation_source: Hydrothermal vent biofilm

ncbi_organism_name: Firmicutes bacterium UBA995

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA995


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thermodesulfobacteriota bacterium


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_organism_name: Brucella cytisi

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Amphritea sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Serratia sp. CY81684

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY81684


ncbi_organism_name: Priestia sp. TGN 0903

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;x__unclassified Priestia;s__Priestia sp. TGN 0903


ncbi_submitter: The Ohio State University


ncbi_isolate: SPRUCE 562

ncbi_organism_name: Terriglobales bacterium

ncbi_strain_identifiers: SPRUCE 562

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Microvirga sp. GCM10011540

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Pseudobutyrivibrio ruminis HUN009

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Italy: Veneto

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Technical University of Denmark


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin; prosthetic joint infection

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_organism_name: Wenyingzhuangia sp.

ncbi_submitter: Yantai University


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1551

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom: Norwich

ncbi_strain_identifiers: P057K P

ncbi_submitter: Imperial College London


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: University of Chicago


ncbi_organism_name: Escherichia coli J53

ncbi_submitter: Seoul National University


ncbi_country: United Kingdom

ncbi_isolation_source: Slurry

ncbi_submitter: University of Nottingham


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Mariner hydrothermal plume 25m

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: NY

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus aureus DAR1692


ncbi_country: France: Lyon

ncbi_isolation_source: animal infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_organism_name: Streptomyces sp. Ag82_O1-15


ncbi_country: USA: MI

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_submitter: the hong kong university of science and technology


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: Norway

ncbi_isolation_source: Exudate from ulcer

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency


ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Italy

ncbi_isolation_source: Parmigiano Reggiano cheese

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Parma


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus T55950


ncbi_organism_name: Nocardia sp. NPDC051990

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Viet Nam: Ben Tre

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: PIHCM 17170

ncbi_submitter: Pasteur Institute of Ho Chi Minh City


ncbi_country: China

ncbi_isolation_source: rectal swab

ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter sp. UNC436CL71CviS28

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica

ncbi_organism_name: Corynebacterium antarcticum

ncbi_submitter: Masaryk University


ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_country: China: Guangzhou

ncbi_strain_identifiers: ST11 CRKP05

ncbi_submitter: PLA Southern Theater General Hospital


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Providencia rustigianii DSM 4541

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Pusan National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Brazil: Pernambuco

ncbi_isolation_source: Inguinal lymph node

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: Colombia

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Agrosavia


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Gilvirhabdus luticola

ncbi_submitter: Sungkyunkwan University


ncbi_isolation_source: Zha-chili (fermented food made of chili and corn flour or rice flour)

ncbi_organism_name: Levilactobacillus tujiorum

ncbi_submitter: Hubei University of Arts and Science


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: passage 100 in MRS medium of strain P-8

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education


ncbi_country: India: Chakranapalem; Prakasham; Andhra Pradesh

ncbi_isolation_source: root

ncbi_organism_name: Microbacterium jejuense

ncbi_submitter: IUNFC


ncbi_isolation_source: intestinal content

ncbi_organism_name: Duncaniella sp.

ncbi_submitter: ChinaCDC


ncbi_country: India: Villiseri; kovilpatti

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Sri Ramachandra Institute of Higher Education and Research


ncbi_country: USA: Boston; MA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M0776

ncbi_submitter: Broad Institute


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_country: Thailand

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_strain_identifiers: NNPa 2732

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Varibaculum cambriense

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Deep-Sea Bioresource Research Group , Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_organism_name: Saccharofermentanales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Marinobacter sp. M5B

ncbi_submitter: the ocean university of China


ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: nodules

ncbi_organism_name: Mesorhizobium sp. B264B1A

ncbi_submitter: Curtin University


ncbi_organism_name: Armatimonas sp.

ncbi_submitter: EPFL


ncbi_assembly_name: Salmonella enterica CVM N38886-SQ v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia: Medellin

ncbi_isolation_source: peripherally inserted central catheter

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterocloster bolteae


ncbi_country: Finland: Helsinki

ncbi_isolation_source: Beef meat

ncbi_organism_name: Leuconostoc gelidum subsp. gelidum

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;x__Leuconostoc gelidum group;s__Leuconostoc gelidum;sb__Leuconostoc gelidum subsp. gelidum


ncbi_organism_name: Streptomyces pseudovenezuelae

ncbi_submitter: Bielefeld University


ncbi_isolation_source: bioreactor

ncbi_organism_name: Synergistaceae bacterium UBA5827

ncbi_submitter: University of Queensland


ncbi_country: India: Agra; Uttar Pradesh

ncbi_isolation_source: sputum

ncbi_organism_name: Mycolicibacter arupensis

ncbi_submitter: National JALMA Institute for Leprosy and Other Mycobacterial Diseases


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Collinsella stercoris

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Lebananon; NH

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: Japan

ncbi_isolation_source: stool

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Sediminicola sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Brazil

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR5875

ncbi_submitter: Broad Institute


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Kitasatospora purpeofusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Southwest University of Science and Technology


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Veillonella caviae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: deep chlorophyll maximum in the Mediterranean off the coast of Alicante; Spain; 75m below sea surface

ncbi_organism_name: marine actinobacterium MedAcidi-G3

ncbi_submitter: Evolutionary Genomics Group (UMH-EGG)


ncbi_country: Ghana: Northern region

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Noguchi Memorial Institute fir Medical Research


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Makerere University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Syntrophaceae bacterium UBA2208


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Idiomarina loihiensis GSL 199

ncbi_strain_identifiers: GSL 199

ncbi_submitter: Utah State University


ncbi_strain_identifiers: LT2 KO_STM3603

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Brazil: Anavilhanas; AM

ncbi_isolation_source: Amazon Forest

ncbi_organism_name: Pseudonocardia sp. ICBG1034

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: butyrate-producing bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Vacuum packed lamb meat

ncbi_organism_name: Clostridium algidicarnis

ncbi_submitter: University of Zurich


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Neorhizobium sp. UBA3142


ncbi_country: South Korea

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Seoul National University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli O157:H7 str. Sakai

ncbi_strain_identifiers: Sakai

ncbi_submitter: GIRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. Sakai


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Fourth Hospital of Hebei Medical University


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: USA

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Haliangiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Bronchalveolar Lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Case Western Reserve University


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Czech Republic: Koprivnice

ncbi_isolation_source: nose

ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: National Institute of Public Health


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Actinobacillus porcinus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Weltevreden

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG10569

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Eristalinus aeneus


ncbi_country: India

ncbi_isolation_source: snow sample

ncbi_organism_name: Cereibacter changlensis JA139

ncbi_submitter: JNTUH


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Switzerland

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Bern


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Bacillus velezensis


ncbi_country: India: Vellore

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: CMC, Vellore


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Syntrophaceae bacterium UBA6807

ncbi_submitter: University of Queensland


ncbi_isolation_source: stool

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Christensenella sp. UBA6880


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: University of Minho


ncbi_isolation_source: mud

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Universidad de los Andes


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Telmatospirillum sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Flagellimonas sp.


ncbi_country: Morocco

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Cronobacter dublinensis subsp. dublinensis

ncbi_submitter: University of Wyoming


ncbi_country: Japan

ncbi_isolation_source: Subsurface hot aquifer water from Japanese gold mine

ncbi_organism_name: Sulfurihydrogenibium subterraneum DSM 15120

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Crimea

ncbi_isolation_source: freshwater

ncbi_organism_name: Methylophilus aquaticus

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: South Korea

ncbi_isolation_source: sludge

ncbi_organism_name: Paracoccus zhejiangensis

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1264936

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Luxembourg: Belvaux

ncbi_isolation_source: bioreactor

ncbi_organism_name: Bacteroidales bacterium UBA3540

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3540


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Streptomyces sp. NBC_00259

ncbi_submitter: Technical University of Denmark


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Mediterranean Sea: coast of Corsica; France

ncbi_organism_name: Enterovibrio calviensis DSM 14347


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_assembly_name: Rumen uncultured genome RUG12939

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_organism_name: Streptomyces ardesiacus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Costa Rica: Estacion Biolgica La Selva; Heredia

ncbi_isolation_source: salivary gland

ncbi_organism_name: Streptomyces sp. 7G

ncbi_submitter: Universidad de La Frontera


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: the First Medicine Centre, Chinese PLA General Hospital


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: GNS Science


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Actinobacteria bacterium UBA4444

ncbi_submitter: University of Queensland


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Monash University


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_country: India

ncbi_organism_name: Xanthomonas axonopodis pv. clitoriae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas axonopodis;x__Xanthomonas axonopodis subcluster 9.5;x__Xanthomonas axonopodis pv. clitoriae


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Brazil

ncbi_isolation_source: Candida albicans SC5314 culture

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: UNIFESP


ncbi_submitter: wenzhou Medical university


ncbi_country: China: Sansha

ncbi_isolation_source: coastal soil

ncbi_organism_name: Paenibacillus arenilitoris

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_assembly_name: IMG-taxon 2606217762 annotated assembly

ncbi_organism_name: Butyrivibrio sp. ob235

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Canada: Alberta

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: spleen

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Oklahoma State University


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: premature infant gut

ncbi_organism_name: Varibaculum cambriense DORA_20

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Pacific Ocean: Lau Basin

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Peru

ncbi_isolation_source: String method

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institue


ncbi_country: Kenya

ncbi_organism_name: Spirochaetales bacterium UBA6463

ncbi_submitter: University of Queensland


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: ETT secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: Norway

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: University of East Anglia


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Broad Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12101

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thalassospira sp. UBA6510


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_organism_name: Sediminibacterium sp.


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Clostridiales bacterium