ncbi_country: Pacific Ocean: Mariana Trench

ncbi_organism_name: Methylophaga pinxianii

ncbi_submitter: fudan university


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Bradyrhizobium sp. SZCCHNR2009

ncbi_submitter: The Chinese University of Hong Kong


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: European Bioinformatics Institute


gtdb_representative: t

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_level: Scaffold

ncbi_organism_name: Nonomuraea purpurea

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: TBRC 1276

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Malaysia

ncbi_isolation_source: intestine

ncbi_organism_name: Weissella cibaria

ncbi_submitter: University of Nottingham Malaysia


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Wenzhou-Kean University: Kean University - Wenzhou Campus


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Nibrella viscosa

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: Hong Kong

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus C0676

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_assembly_level: Complete Genome

ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: HA-MRSA blood clinical site

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LNCC


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_submitter: BGI


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_country: USA

ncbi_submitter: JCVI


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Wenzhouxiangella sp.

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab

ncbi_submitter: University of Queensland


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0775


ncbi_isolation_source: soil

ncbi_organism_name: Sulfurospirillum sp. UBA1314


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Streptomyces griseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Ontario

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Selenomonas noxia


ncbi_organism_name: Pseudomonas aeruginosa C51


ncbi_organism_name: Buttiauxella sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB07-234


ncbi_organism_name: Sunxiuqinia sp.


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha intestinigallinarum


ncbi_organism_name: uncultured Synechococcus sp.


ncbi_country: Uganda

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis B2 7505


ncbi_assembly_name: IMG-taxon 2617270762 annotated assembly

ncbi_organism_name: Sphingomonas rubra

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Paenibacillus sp. FSL P2-0173

ncbi_submitter: Penn State


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Dorea formicigenerans


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_organism_name: Sphingobacterium paramultivorum

ncbi_submitter: Christian-Albrechts-University Kiel


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2663762752 annotated assembly

ncbi_organism_name: Pustulibacterium marinum


ncbi_organism_name: Candidatus Fermentibacter danicus

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus


ncbi_organism_name: uncultured Acinetobacter sp.


ncbi_country: Belgium

ncbi_isolation_source: milk sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ANIWHA


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_02_FULL_41_150


ncbi_country: Thailand

ncbi_isolation_source: water

ncbi_organism_name: Yinghuangia sp. ASG 101

ncbi_strain_identifiers: ASG 101

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Brucella melitensis

ncbi_submitter: China Animal Disease Control Center


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_country: India: Gorchuk; Guwahati; Assam

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: Brazil: Vicosa; Minas Gerais

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Agrobacterium sp. SOY23

ncbi_submitter: Universidade Federal de Vicosa


ncbi_country: Russia: Ekaterinburg

ncbi_isolation_source: lungs

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Finland

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Canada

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Murdoch University


ncbi_submitter: MRSN BI Team


ncbi_isolate: Miscellaneous

ncbi_submitter: UMR 1137 IAME


ncbi_country: China: Shanxi

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Henan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_assembly_name: Rumen uncultured genome RUG11701

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_submitter: IST Austria


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: INRA


ncbi_isolate: metabat2_coassembly_bwa.275 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.275 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Elusimicrobia bacterium GWC2_61_25

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;x__unclassified Elusimicrobiota;s__Elusimicrobia bacterium GWC2_61_25


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Chryseobacterium sp.


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas sivasensis

ncbi_submitter: University of British Columbia


ncbi_organism_name: Escherichia sp. WS495

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Linnaeus University


ncbi_organism_name: Usitatibacteraceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: PA

ncbi_isolation_source: porcine pleural cavity

ncbi_submitter: FDA/CFSAN


ncbi_country: South Korea: Jeju

ncbi_isolation_source: marine sediment

ncbi_organism_name: Thalassotalea sp. PS06

ncbi_submitter: Jeju National University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche Togo Rosati


ncbi_country: Italy

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ISMETT ST512 cl1

ncbi_submitter: ISMETT


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides sp. AM44-19

ncbi_submitter: BGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- LJ-3-4m_bin-0932

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Idiomarina sp. ST10R2A5

ncbi_submitter: Pavol Jozef Safarik University


ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_organism_name: Saprospiraceae bacterium


ncbi_organism_name: Salmonella sp. CQ22WZ0136SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Holophagae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Hunan Agricultural University


ncbi_country: Norway: Baerum

ncbi_isolation_source: Wastewater pump station

ncbi_submitter: Karolinska Institutet


ncbi_country: China

ncbi_submitter: CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CN15


ncbi_isolation_source: food

ncbi_organism_name: Listeria innocua

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_country: China: Wuxi

ncbi_isolation_source: Lake Taihu water

ncbi_organism_name: Microcystis panniformis FACHB-1757

ncbi_submitter: Wuxi Environmental Monitoring Centre & Southeast University


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Bombilactobacillus mellifer

ncbi_submitter: China Agricultural University


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: JCB

ncbi_organism_name: Corynebacterium jeddahense

ncbi_strain_identifiers: JCB

ncbi_submitter: URMITE


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Malaysia: Johor Bharu; Johor

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Monash University Malaysia


ncbi_country: USA: California

ncbi_organism_name: Humibacillus xanthopallidus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli UMEA 3805-1

ncbi_submitter: Broad Institute


ncbi_country: China: Hongkong

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. BcHK20

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BcHK20


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Bilophila sp.


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Sunxiuqinia elliptica


ncbi_country: USA: MS

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR3845


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Halobacteriovoraceae bacterium

ncbi_submitter: Stockholm University


ncbi_assembly_name: Rumen uncultured genome RUG14551

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Catenulispora sp. GP43


ncbi_assembly_name: Rumen uncultured genome RUG173

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: Ohio

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Neisseria sicca


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775

ncbi_type_material_designation: assembly designated as neotype


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Mexico: Hidalgo

ncbi_isolation_source: organs from backyard birds

ncbi_submitter: Centro Nacional de Servicios de Diagnostico en Salud Animal (CENASA)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Firmicutes bacterium AF16-15

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF16-15


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Stenotrophobium sp.

ncbi_submitter: Monash University


ncbi_organism_name: Limosilactobacillus oris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Shanghai Municipal Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rissen


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hennan Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Syntrophomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Streptomyces sp. HD1123-B1

ncbi_submitter: Guangdong Pharmaceutial University


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: MOX R

ncbi_isolation_source: methanogen symbiont from mussel gill epithellium

ncbi_strain_identifiers: MOX R

ncbi_submitter: CRC 1182 Origin and Function of Metaorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__Bathymodiolus brooksi methanotrophic gill symbiont


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Azonexus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_country: Thailand

ncbi_isolation_source: plaa-som; Thai fermented fish product

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Institute of Biomedical Informatics, National Yang Ming University


ncbi_organism_name: Streptomyces echinatus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: cows

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: microbial pathogenic ecology group


ncbi_organism_name: Lachnospirales bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_isolation_source: cornea

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of New South Wales


ncbi_organism_name: Acinetobacter variabilis


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Synechococcus sp. N26

ncbi_submitter: UNIVERSITY OF SOUTHERN CALIFORNIA


ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Priestia megaterium

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_country: Japan: Toyama

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Micromonospora sp. NPDC049801

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_organism_name: Brucella intermedia


ncbi_isolation_source: human stool

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: DOE JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Brevibacterium ravenspurgense


ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA:TX; Galveston; East Beach

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Willamette University


ncbi_isolation_source: water

ncbi_organism_name: Shewanella putrefaciens

ncbi_strain_identifiers: ATCC 8071

ncbi_submitter: Ocean University of China


ncbi_organism_name: Streptomyces roseofulvus

ncbi_submitter: Henan University of Science and Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_strain_identifiers: MOR

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Quadram Institute BioScience


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Washington


ncbi_organism_name: Actinomadura sp. GTD37

ncbi_submitter: Yildiz Technical University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_assembly_name: De novo assembly of KCRI isolate RDK37_40

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_country: Germany

ncbi_isolation_source: starter culture

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: fastidious anaerobic agar

ncbi_organism_name: Dorea longicatena


ncbi_organism_name: uncultured Desulforhopalus sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG14929

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: uncultured Synergistaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: KEMRI


ncbi_country: Peru: Independence Bay; Paracas

ncbi_isolation_source: shallow water

ncbi_organism_name: Vibrio sp. V1B

ncbi_submitter: Universidad Cientifica del Sur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__unclassified Vibrio harveyi group;s__Vibrio sp. V1B


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Occiput swab

ncbi_organism_name: Corynebacterium kefirresidentii

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: New York; NY

ncbi_isolation_source: Neck/Axilla

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Sphaerochaetaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: USA: Cincinatti

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: China: Xiamen

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_strain_identifiers: Amoy

ncbi_submitter: xiamen university


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_submitter: South China Agricultural University


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: uncultured Peptoniphilus sp.

ncbi_submitter: EBI


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Fusobacterium russii ATCC 25533

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Serratia nematodiphila

ncbi_submitter: University of the Philippines


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Nocardia flavorosea

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_assembly_name: Rumen uncultured genome RUG10328

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Chitinophagales bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. C-M11

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Gordonia polyisoprenivorans

ncbi_submitter: Tongji University School of Medicine


ncbi_organism_name: Porphyromonas cangingivalis

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: Minnesota

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Minnesota


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica


ncbi_assembly_name: Rumen uncultured genome RUG074

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10751

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Rhodalgimonas zhirmunskyi

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: California; Eel River; South Forke Eel River; upstream of confluence with Mud Creek

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_06_SFM_O_A

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Munster Technological University


ncbi_organism_name: uncultured Treponema sp.


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Methylobacterium sp. Leaf104

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: URMITE


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Mesorhizobium sp. L2C054A000

ncbi_submitter: University of Southern California


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Kingella oralis

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Mycobacterium paragordonae

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_organism_name: Enterococcus sp. DIV1304_2

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Caldilineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Pasteurella sp. PK-2025

ncbi_submitter: University of Bern


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fidelibacterota bacterium UBA2151

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA2151


ncbi_organism_name: Salmonella sp. C3207

ncbi_submitter: Sichuan University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: MIT Cambridge; MA

ncbi_organism_name: Campylobacter sp. MIT 99-7217

ncbi_submitter: MIT


ncbi_organism_name: Mycobacterium tuberculosis BT1

ncbi_submitter: School of Biomedical Sciences, Faculty of Medicine, The Chinese University of Hong Kong


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: cold seep

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Finland: Helsinki

ncbi_isolation_source: Broiler fillet

ncbi_organism_name: Leuconostoc gelidum subsp. gelidum

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;x__Leuconostoc gelidum group;s__Leuconostoc gelidum;sb__Leuconostoc gelidum subsp. gelidum


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boulder; Colorado

ncbi_isolation_source: urban location

ncbi_organism_name: Lonsdalea quercina subsp. quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: IGA Technology Services Srl


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: New York City

ncbi_isolation_source: urine clean catch

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Corynebacterium sp. c25Ua_89

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: China: Yangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Canada

ncbi_isolation_source: meat

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: chicken meat


ncbi_country: USA: CA

ncbi_isolation_source: Young Turkeys

ncbi_strain_identifiers: CVM N59592F

ncbi_submitter: FDA


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: ICMR-National Institute of Occupational Health


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S31

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pretoria


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-248

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Blastocatellia bacterium

ncbi_strain_identifiers: new MAG-248

ncbi_submitter: Micoorganism


ncbi_country: China: Guangdong

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: lake water

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: South Dakota

ncbi_isolation_source: Yates Shaft; SURF

ncbi_organism_name: Geobacillus sp. 47C-IIb

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Canada: Sooke River

ncbi_isolation_source: pinacoderm; endoderm; and surrounding water

ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: University of Alberta


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Odense University Hospital


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: OCS116 cluster bacterium AG-343-E15

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;x__OCS116 cluster;s__OCS116 cluster bacterium AG-343-E15


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Paracoccus alcaliphilus

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Rennes

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_submitter: UK Health Security Agency


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Korea: Seoul

ncbi_isolation_source: nasophraynx

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chungbuk National University Hospital


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: human skin

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: NHGRI/NIH


ncbi_country: Canada: Montreal

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: B ZZa5

ncbi_submitter: McGill University


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: Respiratory tract

ncbi_submitter: Centre for genomic regulation (CRG)


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes communis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Germany

ncbi_isolation_source: joint

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_submitter: The Lu'an People's Hospital


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Virginia

ncbi_isolation_source: Precipitation

ncbi_organism_name: Pseudomonas sp. BAV 2493

ncbi_submitter: Virginia Tech


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas sp. zjy_10

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_country: Spain: Lugo

ncbi_submitter: Universidad de Chile


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Universite catholique de Louvain


ncbi_isolate: CON4 bin1

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_strain_identifiers: CON4 bin1

ncbi_submitter: China Agricultural University


ncbi_country: Australia

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Microbiological Diagnostic Unit


ncbi_country: Russia: Kursk Region

ncbi_isolation_source: chernozem soil

ncbi_organism_name: Streptomyces violaceus

ncbi_strain_identifiers: NRRL B-2867

ncbi_submitter: University of Illinois


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Brachybacterium sp.

ncbi_submitter: EMG


ncbi_country: Italy: Roma

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_country: China: Anhui

ncbi_submitter: University of Science and Technology of China


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: China: Jiangsu Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_country: USA: offshore reef; Ft. Lauderdale; FL

ncbi_isolation_source: surface mucus layer

ncbi_organism_name: Vibrio coralliilyticus

ncbi_submitter: University of Florida


ncbi_strain_identifiers: NNAb 2486

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_isolation_source: wound; abdomen

ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Eastbourne


ncbi_assembly_name: freshwater MAG --- MJ-2014-D6_bin-145

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Lithuanian Research Centre for Agriculture and Forestry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Firmicutes bacterium UBA5010

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5010


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Isosphaeraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_organism_name: Salmonella sp. 2021_277

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_country: Switzerland

ncbi_isolation_source: EFB infected honey bee larva

ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Germany

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Escherichia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-400

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_strain_identifiers: new MAG-400

ncbi_submitter: Micoorganism


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: China: Beijing City

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: lake water

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Australia

ncbi_submitter: The ithree institute


ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: Hawaii Volcanoes National Park; Hawaii

ncbi_isolation_source: Plant

ncbi_organism_name: Rosenbergiella epipactidis

ncbi_submitter: Complutense University of Madrid


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: South Korea: Yongin

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Paracoccus hibiscisoli

ncbi_strain_identifiers: CCTCC AB2016182

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: milk powder

ncbi_organism_name: Anoxybacillus flavithermus

ncbi_submitter: Technical University Munich


ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0207

ncbi_submitter: Broad Institute


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Monoglobus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudolactococcus insecticola

ncbi_submitter: University of yamanashi


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: Canada: Axel Heiberg Island; Nunavut

ncbi_isolation_source: Active layer permafrost soil

ncbi_organism_name: Pseudomonas prosekii

ncbi_submitter: Universite Laval


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_submitter: University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: USA: Ohio

ncbi_organism_name: Halanaerobium congolense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Umea University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Chlamydia trachomatis L1/1322/p2

ncbi_submitter: Sanger Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_country: Cambodia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Nocardioides kongjuensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Rhodococcus sp. MEB032

ncbi_submitter: University of Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. MEB032


ncbi_country: Germany: Hannover

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: Florida

ncbi_isolation_source: Gill tissue

ncbi_organism_name: Candidatus Sedimenticola endophacoides

ncbi_submitter: Clemson University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Thailand

ncbi_isolation_source: pork sausage

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_strain_identifiers: CIRM-BIA 2177

ncbi_submitter: Brigham Young University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lacticaseibacillus rhamnosus


ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_country: USA: TX

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Texas Tech University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Sahlgrenska University Hospital


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Dysosmobacter welbionis


ncbi_organism_name: Acinetobacter sp. ULE_I080

ncbi_submitter: Universidad de Leon


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Nitriliruptoraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacteroidota bacterium


ncbi_isolation_source: Cystic Fibrosis lung sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of Queensland


ncbi_organism_name: Bdellovibrionia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Germany

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bielefeld, Germany


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Fidelibacterota bacterium


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Japan

ncbi_organism_name: Blautia sp.

ncbi_submitter: Yonsei University


ncbi_country: Switzerland

ncbi_isolation_source: soil

ncbi_strain_identifiers: Rsan-ver

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Germany: Aachen

ncbi_isolation_source: Feces

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: University of Lausanne


ncbi_country: Australia: Brisbane

ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Caballeronia sp. LZ002

ncbi_submitter: University of Texas at Arlington


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Zurich


ncbi_country: Spain: Alicante

ncbi_isolation_source: 0.22 micron fraction from Freshwater Reservoir Amadorio

ncbi_organism_name: Opitutia bacterium UBA953

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA953


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Nanjing Municipal Center for Disease Control and Prevention


ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Burkholderia glumae 3252-8

ncbi_country: Colombia

ncbi_organism_name: Burkholderia glumae 3252-8

ncbi_submitter: Colorado State University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Brachybacterium sp. GPGPB12

ncbi_submitter: Leibniz Institute for Baltic Sea Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Metabacillus halosaccharovorans

ncbi_strain_identifiers: MER TA 181

ncbi_submitter: Jet Propulsion Laboratory


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Rakuno Gakuen University; Mansoura University; Zewail City of Science and Technology


ncbi_organism_name: Campylobacter coli 2548

ncbi_submitter: Cornell University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Cellvibrio sp. QJXJ

ncbi_strain_identifiers: QJXJ

ncbi_submitter: Hunan University of Science and Technology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces niveus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Proteus sp. G2671

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2671


ncbi_organism_name: Aminivibrio sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Italy

ncbi_submitter: Sapienza University of Rome


ncbi_country: China: Ya an

ncbi_isolation_source: rhizosphere soil of healthy poplars

ncbi_organism_name: Streptomyces sampsonii

ncbi_submitter: Sichuan Agricultural University


ncbi_country: China: South China Sea

ncbi_isolation_source: ocean sediment

ncbi_organism_name: Algoriphagus algorifonticola

ncbi_submitter: Zhejiang University


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Isoptericola halotolerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01352

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01352


ncbi_country: Norway

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Olav University Hospital


ncbi_country: Bangladesh: Matlab

ncbi_isolation_source: Human feces

ncbi_submitter: icddr,b


ncbi_isolation_source: Slaughterhouse

ncbi_submitter: Sao Paulo State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 264

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Basel


ncbi_country: USA: University of Miami Department of Pathology

ncbi_submitter: Ares Genetics GmbH


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter rudis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium bangladeshense

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- F-4_bin-063

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Phaeodactylibacter sp.

ncbi_submitter: The University Hong Kong


ncbi_country: Lebanon

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: urine

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_country: Japan

ncbi_organism_name: Paenibacillus terrigena DSM 21567

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Komeilibacteria bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Komeiliibacteriota;x__unclassified Candidatus Komeilibacteria;s__Candidatus Komeilibacteria bacterium


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: Netherlands

ncbi_isolation_source: wood-decay soil material

ncbi_organism_name: Granulicella sp. 5B5

ncbi_submitter: Netherlands Institute of Ecology (NIOO-KNAW)


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: Norwegian Sea; Soria Moria Vent Field Gallionella Garden

ncbi_isolation_source: biosyringe of iron mat from hydrothermal vent

ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: University of Bergen


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: fecal samples

ncbi_organism_name: Leyella stercorea

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Research Network Zoonotic Infectious Diseases


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: USA

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: iowa state university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Colombia: Barranquilla

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_organism_name: Spiribacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Methylobacterium fujisawaense

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Chinese center for disease control and prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Argentina: Vila; Santa Fe

ncbi_isolation_source: first pond of the AUR serial dairy industry stabilization pond system

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INTA


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodococcus sp.

ncbi_submitter: EMG


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8268

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: stool

ncbi_organism_name: Massiliimalia timonensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Spirochaeta sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_submitter: Weifang People's Hospital


ncbi_country: Russia: Perm region

ncbi_isolation_source: Elytrigia repens rhizosphere; oilfield

ncbi_organism_name: Rhodococcoides fascians

ncbi_strain_identifiers: IEGM 1233

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_submitter: Monash University


ncbi_country: USA: Indian River Lagoon; Florida

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Central Florida


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia

ncbi_isolation_source: Gastric Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_country: USA: New Jersey

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Weissella confusa

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA: California

ncbi_isolation_source: clinical

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Stockholm University


ncbi_assembly_name: IMG-taxon 2634166330 annotated assembly

ncbi_organism_name: Paracidovorax wautersii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolate: Gemmatimonadetes sp. RBC063

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_strain_identifiers: Gemmatimonadetes sp. RBC063

ncbi_submitter: UNIVERSITY OF WATERLOO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Streptomyces sp. NPDC038707

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas qingdaonensis

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bordetella pertussis CS

ncbi_strain_identifiers: CS

ncbi_submitter: National Institute for the Control of Pharmaceutical and Biological Products


ncbi_country: Serbia

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_country: Lithuania

ncbi_isolation_source: Fermented vegetables

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Vilnius University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Myroides sp. C20-1

ncbi_submitter: Yangzhou University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Acidobacteria bacterium ADurb.Bin051

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteria bacterium ADurb.Bin051


ncbi_country: China: Zhejiang

ncbi_isolation_source: environmental

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Laboratory for Diagnosis and Treatment of Infectious Diseases


ncbi_country: South Korea

ncbi_isolation_source: dried fermented soybeans (Meju)

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CHUNG ANG UNIVERSITY


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Helicobacter pylori Rif1

ncbi_submitter: RIPCM


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces atratus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycolicibacterium phlei DSM 43071

ncbi_submitter: Uppasala University & Jawaharlal Nehru University


ncbi_isolate: Klebsiella pneumoniae

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Klebsiella pneumoniae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Corynebacterium minutissimum NBRC 15361

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Microbulbifer sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany

ncbi_isolation_source: urine

ncbi_submitter: SurvCARE


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Kribbella solani

ncbi_submitter: Oregon State University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0322

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Ilumatobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: nasal swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_submitter: Huzhou CDC


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_name: Rumen uncultured genome RUG10210

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Weihai

ncbi_isolation_source: offshore sediment

ncbi_organism_name: Ornithinimicrobium sp. F0845

ncbi_submitter: Shandong University,Weihai


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Aureispira sp. CCB-E

ncbi_strain_identifiers: CCB-E

ncbi_submitter: Universiti Sains Malaysia


ncbi_organism_name: Pyrinomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: India

ncbi_isolation_source: river water

ncbi_organism_name: Bacillus subtilis Hal1

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;x__Bacillus subtilis Hal1


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: Sludge sample

ncbi_organism_name: Rhodococcus phenolicus

ncbi_submitter: Northumbria University


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Ethiopia

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Danish Technical University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Cellvibrionaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Paralachnospira;x__unclassified Candidatus Paralachnospira;s__Candidatus Paralachnospira sp. LCP21S3_A2


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rochdale


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Streptomyces nojiriensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Roseivirgaceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_submitter: The University of Auckland


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_submitter: Univeristy of South Australia


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Streptomyces rochei


ncbi_isolation_source: Hydrothorax

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Garbage Beach; Woods Hole; MA

ncbi_isolation_source: seagrass sediment

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: UC Davis


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F83272

ncbi_submitter: Broad Institute


ncbi_organism_name: Sagittula sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Marinimicrococcus flavescens

ncbi_submitter: Yunnan University


ncbi_country: Russia: Arkhangelsk

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Peru: Lima

ncbi_isolation_source: livestock

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: anal swab

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Uganda

ncbi_organism_name: Pantoea vagans

ncbi_submitter: Nanjing Forestry University


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Yangzhou University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Coprococcus comes


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University