ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GenomeTrakr Project: Ohio Department of Agriculture | Animal Disease Diagnostic Laboratory


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_level: Complete Genome

ncbi_country: USA:Terrebonne Bay

ncbi_organism_name: Methylophilaceae bacterium LSUCC0622

ncbi_submitter: University of Southern California


ncbi_assembly_level: Scaffold

ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA:Delaware Bay; Delaware

ncbi_isolation_source: bay water spring sample 30 PSU in less than .8 micron size fraction

ncbi_organism_name: Candidatus Arcticimaribacter sp.

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Arcticimaribacter;x__unclassified Candidatus Arcticimaribacter;s__Candidatus Arcticimaribacter sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Ghent University


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Singapore

ncbi_isolation_source: air

ncbi_organism_name: Brachybacterium sp. SGAir0954

ncbi_submitter: Nanyang Technological University


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Huashan Hospital


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium urealyticum

ncbi_submitter: US Food and Drug Administration


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Treponemataceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Planctomycetes bacterium ADurb.Bin126

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium ADurb.Bin126


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: koumiss

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Inner Mongolia Agricultural Univercity


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3016

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New Mexico

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 1-176-05_S3_C1

ncbi_submitter: IGS


ncbi_country: South Korea

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_submitter: Miguel Servet University Hospital


ncbi_country: USA:Colorado; Denver; Cherry Creek underneath Larimer street bridge

ncbi_isolate: LAW

ncbi_isolation_source: Sediment of Cherry Creek; enriched in culture for about 1.5 years

ncbi_organism_name: Candidatus Nitrotoga sp. LAW

ncbi_strain_identifiers: LAW

ncbi_submitter: University of Colorado Denver

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp. LAW


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces brasiliensis

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: Argentina

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_isolation_source: small intestine

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Kordiimonadaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Providencia sp. PROV001

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Qingdao

ncbi_isolation_source: marine microplastic biofilm

ncbi_organism_name: Alteromonas sp. 009811495

ncbi_submitter: Ocean University of China


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudomonas syringae pv. maculicola

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. maculicola


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: China

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Denmark: Tranekaer; wet forest soil near alpaca farm

ncbi_organism_name: Kitasatospora purpeofusca

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Campylobacter coli

ncbi_submitter: chu de bordeaux


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFOXYB2_FULL_41_10


ncbi_assembly_level: Chromosome

ncbi_country: Thailand

ncbi_isolation_source: other

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Candidatus Fonsibacter sp.

ncbi_submitter: Instituto de Quimica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;x__unclassified Candidatus Fonsibacter;s__Candidatus Fonsibacter sp.


ncbi_assembly_name: Rumen uncultured genome RUG13437

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Newcastle

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Bronx; NY

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: China:Guangdong; Zhaoqing

ncbi_isolation_source: fecal sample

ncbi_submitter: SouthChina Agriculture University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0855

ncbi_submitter: Broad Institute


ncbi_country: China: Zhengzhou

ncbi_isolation_source: Powdered Infant Formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Henan Center for Diease Control and Prevention


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_country: Germany

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Treponema sp. OMZ 792

ncbi_strain_identifiers: OMZ 792

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Viet Nam: Dak Lak

ncbi_isolation_source: soil near root of coffee

ncbi_organism_name: Streptomyces sp. CBG9

ncbi_submitter: institute of biotechnology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Yersinia pestis D106004

ncbi_submitter: State Key Laboratory for Infectious Disease Prevention and Control, Institute for Communicable Disease Control and Prevention


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Alloscardovia omnicolens

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: "Federico II" University of Naples


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WA

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Houston

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Czech Republic

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Symbiopectobacterium;x__unclassified Symbiopectobacterium;s__Candidatus Symbiopectobacterium sp. PLON1


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_genome_category: derived from single cell

ncbi_organism_name: Escherichia coli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Istituto di Scienze Biomediche della Difesa


ncbi_organism_name: Salmonella sp. NW1046

ncbi_submitter: Sichuan University


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_submitter: Jinshan District Center for Disease Control and Prevention


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Legionella worsleiensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Roseibium sp.


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Switzerland

ncbi_isolation_source: fermented sausage

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Ili; Xinjiang

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: Blumenau

ncbi_submitter: LNCC


ncbi_organism_name: Candidatus Midichloria mitochondrii

ncbi_submitter: National Institute of Public Health and Environment (RIVM)


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: Biotechnical faculty Ljubljana


ncbi_organism_name: Nitrospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: South Africa

ncbi_isolation_source: Fresh produce

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: UPMP 784

ncbi_submitter: University of Pretoria


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Acinetobacter ursingii


ncbi_country: Bahamas: Chub Cay

ncbi_isolation_source: squirrelfish gut

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Naval Research Laboratory


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Desulfobulbales bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Frigidibacter sp.

ncbi_submitter: University of Calgary


ncbi_country: USA: Florida; Big Torch Key

ncbi_organism_name: Micromonospora sp. WMMD980

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Salmonella enterica subsp. diarizonae

ncbi_submitter: University of Zurich


ncbi_country: Denmark

ncbi_isolation_source: aborted fetus

ncbi_organism_name: Aliarcobacter thereius LMG 24486

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Canada

ncbi_isolation_source: Isolated from contaminated platelet concentrates

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Health Canada


ncbi_country: India

ncbi_isolation_source: wheat rhizospheric soil

ncbi_organism_name: Pseudomonas sp. SK

ncbi_strain_identifiers: SK

ncbi_submitter: Indian Institute of Technology Delhi


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 25493_10

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: The strain was isolated from blood culture

ncbi_submitter: Aarhus University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1462

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


gtdb_type_species_of_genus: t

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfocurvibacter;s__Desulfocurvibacter africanus;sb__Desulfocurvibacter africanus subsp. africanus;x__Desulfocurvibacter africanus subsp. africanus DSM 2603


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Okinawa Prefectural Institute of Health and Environment


ncbi_country: China: Xiamen

ncbi_organism_name: Marichromatium gracile

ncbi_submitter: Michigan State University


ncbi_assembly_name: Rumen uncultured genome RUG11374

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Beijing Genome Institute


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_isolate: AOP24_D1_surf _bin _23

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP24_D1_surf _bin _23

ncbi_submitter: Genoscope


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Finland

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: USA: Rhode Island

ncbi_isolate: F

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: F;D344RRF x C68

ncbi_submitter: brown University/Rhode Island Hospital


ncbi_country: Germany

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Oregon State University


ncbi_country: Philippines: Bukidnon

ncbi_isolation_source: stem

ncbi_organism_name: Erwinia mallotivora

ncbi_submitter: Institute of Plant Breeding


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Malaysia Sabah


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Harvard University


ncbi_country: Japan: AIST Tsukuba

ncbi_isolation_source: sediments of the soda-depositing soda lake

ncbi_organism_name: Fuchsiella alkaliacetigena

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Right guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Canada

ncbi_isolation_source: Rectum

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: China

ncbi_isolation_source: ocean sediment

ncbi_organism_name: Jeotgalibacillus proteolyticus

ncbi_submitter: Yantai Institute of Coastal Zone Research,Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_isolation_source: Bovine Faeces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_isolation_source: bronchial washing

ncbi_organism_name: Acinetobacter baumannii TYTH-3

ncbi_submitter: National Tsing Hua University


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Campylobacter sp. RM9333

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_organism_name: Shimia thalassica

ncbi_submitter: University of Southern California


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG10433

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Harvard University


ncbi_country: USA: Florida

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Harvard Forest; Massachusetts

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anaerostipes hadrus


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Pseudoxanthomonas sp. UC19_8

ncbi_submitter: The Connecticut Agricultural Experiment Station


ncbi_organism_name: Parageobacillus toebii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Parasynechococcus sp.

ncbi_submitter: HKUST


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Streptomyces griseorubiginosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhodomicrobium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Pseudoclavibacter sp.

ncbi_submitter: Teagasc


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Microbacterium sp. LBN7

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: uncultured Ottowia sp.


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp6 AA38

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp6 AA38

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: ProBone


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Prevotella jejuni

ncbi_submitter: EMG


ncbi_organism_name: Microcoleus sp. D3_18a_C4

ncbi_submitter: Palacky University Olomouc


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: feces

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab cheek

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Chonbuk National University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: human blood of bacteremia patient

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Chung-Ang university


ncbi_country: Spain: Barcelona

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitari Vall d'Hebron


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: freshwater MAG --- Loc090721-8-6m_bin-0392

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Actinobacillus ureae

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: meat

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NIZO Food Research BV


ncbi_country: Poland

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Faecalicatena fissicatena

ncbi_submitter: University of Chicago


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Corynebacterium variabile


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: University of Alberta


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: India: Gujarat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_isolation_source: Colon

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus group sp. BceL085

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL085


ncbi_organism_name: Ectobacillus polymachus

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: China: Hangzhou

ncbi_isolation_source: Abscess

ncbi_submitter: Zhejiang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Mahidol University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: USA: Georgia

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Nigeria

ncbi_isolation_source: Nasal swabs

ncbi_submitter: Igbinedion University Okada


ncbi_country: China: Jiangsu

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCBAU 21360

ncbi_strain_identifiers: CCBAU 21360

ncbi_submitter: China Agricultural University


ncbi_country: USA: New Jersey

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_country: China: Yunnan

ncbi_isolation_source: tobacco leaves

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Yunnan Academy of Tobacco Agriculture Science


ncbi_assembly_name: IMG-taxon 2617270765 annotated assembly

ncbi_organism_name: Marinobacter mobilis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: CAU


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Chloroflexus sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Chicken airsac (Gallus gallus)

ncbi_submitter: Mississippi State University


ncbi_organism_name: Vibrio diabolicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_isolation_source: PACA; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_organism_name: Propioniciclava tarda

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Listeria ivanovii

ncbi_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


ncbi_country: Japan

ncbi_isolation_source: fecal sample

ncbi_organism_name: Lawsonibacter asaccharolyticus

ncbi_submitter: Microbe Division/ Japan Collection of Microorganisms, RIKEN BioResource Center


ncbi_organism_name: Pseudomonas sp.


ncbi_country: Portugal: Famoes

ncbi_isolation_source: vagina mucosa

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Singapore

ncbi_isolation_source: hospital wastewaters

ncbi_submitter: National University of Singapore


ncbi_organism_name: Amoebophilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA

ncbi_isolation_source: blood from non-CF patient

ncbi_organism_name: Cupriavidus pauculus

ncbi_submitter: University of Michigan


ncbi_country: Australia: Clermont; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Queensland


ncbi_country: Jersey

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Japan:Shizuoka; Higashi-izu; Arayu

ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Thermonema sp.

ncbi_submitter: RIKEN-BRC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: EBI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Melbourne


ncbi_assembly_name: IMG-taxon 2663762789 annotated assembly

ncbi_organism_name: Pseudomonas prosekii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Silvibacterium sp.


ncbi_strain_identifiers: Challis

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii;x__Streptococcus gordonii str. Challis;x__Streptococcus gordonii str. Challis substr. CH1


ncbi_country: China: Nantong; Jiangsu province

ncbi_organism_name: Gemmobacter caeni

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Achromobacter aegrifaciens


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: Axilla

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_isolation_source: aspirate

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Candidatus Faecivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Faecivicinus;x__unclassified Candidatus Faecivicinus;s__Candidatus Faecivicinus sp.


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Puniceicoccaceae bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria weaveri

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Bangladesh

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus EKP-008

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus EKP-008


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: Spribille Lab


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Denmark: Ega

ncbi_isolation_source: activated sludge from Ega_18-Q3-R5-49

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Protofrankia datiscae

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_isolation_source: not provided

ncbi_organism_name: Treponema lecithinolyticum


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tui Malila hydrothermal plume 10m

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatus Lambdaproteobacteria;x__unclassified Candidatus Lambdaproteobacteria;s__Candidatus Lambdaproteobacteria bacterium


ncbi_organism_name: Sinorhizobium fredii USDA 205

ncbi_strain_identifiers: USDA 205

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Sinorhizobium/Ensifer group;g__Sinorhizobium;x__Sinorhizobium fredii group;s__Sinorhizobium fredii;x__Sinorhizobium fredii USDA 205


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus intermedius F0413

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus H88163


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Bacteroides pyogenes

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of Queensland


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_country: Greece

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South-Central University for Nationalities


ncbi_organism_name: Bartonella henselae

ncbi_submitter: ebi


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Thailand: Chiang Mai

ncbi_isolation_source: flower

ncbi_organism_name: Ameyamaea chiangmaiensis

ncbi_strain_identifiers: TBRC 6

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)


ncbi_country: Brazil: Recife

ncbi_isolation_source: catheter

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: MD

ncbi_organism_name: Niallia circulans

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Shanxi University


ncbi_country: Netherlands

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus group sp. BceL242

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL242


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_submitter: bioMerieux


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudoalteromonas ruthenica

ncbi_submitter: University of Queensland


ncbi_country: Ireland

ncbi_isolation_source: Dairy

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Trichococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiaceae bacterium DTU079

ncbi_submitter: Technical University of Denmark


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Princeton University


ncbi_country: China: Anhui

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Throat swab

ncbi_organism_name: Chlamydia psittaci

ncbi_strain_identifiers: Fr Da

ncbi_submitter: University of the Sunshine Coast


ncbi_assembly_name: IMG-taxon 2663763603 annotated assembly

ncbi_organism_name: Pseudomonas marincola

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: mBioClim


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: mucosa of vagina [UBERON:0004983]

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: TNO


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Italy: Rome

ncbi_isolation_source: tooth

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Camerino


ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Taiwan

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: University of Copenhagen


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: McGill University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: USA: Ohio

ncbi_submitter: JCVI


ncbi_country: China: Gansu

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_country: Russia: Rostov-on-Don

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Research Institute for Plague Control


ncbi_country: USA: Georgia

ncbi_isolation_source: xylem

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: Auburn University


ncbi_organism_name: Micrococcus luteus J28

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China:Xishuang Banna tropical rainforest; Yunnan province

ncbi_organism_name: Stackebrandtia albiflava


ncbi_isolation_source: cold seep

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Taiwan: Taoyuan


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Ocean university of China


ncbi_country: Uganda

ncbi_organism_name: Mycobacterium tuberculosis Wt 21231

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis Wt 21231


ncbi_organism_name: Escherichia coli UMEA 3318-1


ncbi_country: Czech Republic

ncbi_organism_name: Enterobacteriaceae bacterium PSpyr

ncbi_submitter: Free University of Bozen-Bolzano


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_assembly_name: freshwater MAG --- AM5_bin-0425

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Francisellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Algibacter sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: uncultured Anaerolinea sp.


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parasutterella excrementihominis


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Norway: Sula; Sula Ridge

ncbi_organism_name: Spongiibacter marinus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nantong Center for Disease Control and Prevention


ncbi_assembly_name: Rumen uncultured genome RUG14236

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Colorado State University


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Thiobacillus denitrificans

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome RUG12313

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northwest A&F University


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Wayne State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Pseudoxanthomonas sp. OG2


ncbi_organism_name: Corynebacterium glutamicum

ncbi_strain_identifiers: Corynebacterium glutamicum ATCC 13032

ncbi_submitter: The catholic university of korea


ncbi_country: Germany: in the city of Bonn

ncbi_isolation_source: pork sausage

ncbi_organism_name: Chryseobacterium capnotolerans

ncbi_submitter: University of Bonn


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14091

ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectasl swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Antioquia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_submitter: University of Michigan Medical School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;sb__Mycobacterium intracellulare subsp. chimaera


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_country: China:Ningbo City

ncbi_isolation_source: island sediment

ncbi_organism_name: Rhodobacteraceae bacterium NBU2976

ncbi_submitter: Ningbo University


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Sphingobacteriaceae bacterium UBA5527

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-325-C10

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_organism_name: Longimicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Manhattan; KS

ncbi_isolation_source: Probiotic

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kansas State University


ncbi_country: Netherlands

ncbi_isolation_source: infant

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University College Cork


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_41_10


ncbi_country: Canada: Manitoba

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium sp. C104

ncbi_submitter: University of Manitoba


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Streptomyces sp. SL203

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Canada: British Columbia; Vancouver

ncbi_organism_name: Aeromonas salmonicida subsp. salmonicida

ncbi_submitter: Memorial University of Newfoundland


ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Dysgonomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Thailand

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_organism_name: Micromonospora sp. NPDC005194

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sichuanensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Mesorhizobium abyssinicae

ncbi_submitter: University of Pretoria


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruthenibacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG12849

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: feces from livestock farm

ncbi_submitter: University of Bern


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Midwest

ncbi_isolation_source: feces

ncbi_submitter: USDA


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: China: Henan

ncbi_submitter: China CDC


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Erwinia sp. 198


ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: CCUG 4007 T

ncbi_organism_name: Neisseria weaveri

ncbi_strain_identifiers: CCUG 4007 T

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Akkermansiaceae bacterium UBA2367

ncbi_submitter: University of Queensland


ncbi_country: Germany: Cologne

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Cologne


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_organism_name: Enterobacter asburiae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Tours

ncbi_isolation_source: infection

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_assembly_name: freshwater MAG --- Day2-6_bin-560

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Switzerland

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oxalobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pigmentiphaga litoralis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Ruminococcus bromii


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Spirulinaceae cyanobacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: [Ruminococcus] torques


ncbi_submitter: HUN-REN Bilogical Research Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- B4coas_bin-0394

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fidelibacterota bacterium UBA3000

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA3000


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Antarctica

ncbi_isolation_source: R2A medium

ncbi_organism_name: Deinococcus psychrotolerans

ncbi_submitter: College of Life Science


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alteromonas sp. KUL42

ncbi_submitter: RIMG, Kochi University


ncbi_country: Bangladesh: Kuakata

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- MJ120716A_bin-0852

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acinetobacter thermotolerans

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences


ncbi_country: USA: California

ncbi_isolation_source: rectal swab from healthy college student

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF34-10BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Spain:Mallorca; Balearic Islands

ncbi_isolation_source: ulcer

ncbi_organism_name: Pseudomonas aeruginosa SD9

ncbi_submitter: University of Balearic Islands


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Rhizomicrobium sp.


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_organism_name: Mumia sp. zg.B53

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: uncultured Bacillota bacterium


ncbi_country: USA

ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides fragilis str. 3998 T(B) 4

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. 3998 T(B) 4


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Beijing

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Michigan

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Kenya

ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_isolate: SPRUCE 201

ncbi_organism_name: Gaiellaceae bacterium

ncbi_strain_identifiers: SPRUCE 201

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Campylobacter coli


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 155


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: sputum

ncbi_organism_name: Pandoraea apista

ncbi_submitter: Public Health England


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Mariprofundus sp.

ncbi_submitter: Lund University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Chanaral de Aceituno Island

ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces sp. CHA15

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Broad Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Ruminococcus albus

ncbi_submitter: EMBL-EBI


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: University of Minnesota


ncbi_isolation_source: throat

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Michigan


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Atopobium sp. UBA7740

ncbi_submitter: University of Queensland


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Escherichia coli

ncbi_submitter: IST Austria


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Bartonella krasnovii

ncbi_submitter: Hebrew university


ncbi_country: China: Beijing

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Massachusetts

ncbi_isolation_source: stem gall

ncbi_organism_name: Xanthomonas sp. MWU16-30325

ncbi_submitter: Midwestern University


ncbi_assembly_name: Salmonella enterica CVM N46847-R v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Australia: Ulupna; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Salmonella sp. NW472

ncbi_submitter: Sichuan University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Desulfarculaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Enterococcus durans

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 3064

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Zymomonas mobilis

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Central Florida


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Zurich


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-2782

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Dokdonia sp.

ncbi_submitter: University of East Anglia


ncbi_country: USA

ncbi_isolation_source: human clinical isolate

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Instituto Nacional de Pesquisas da Amazonia


ncbi_country: Germany: Tubingen

ncbi_isolation_source: leaf

ncbi_organism_name: Leifsonia sp. Leaf264

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: University of Toronto


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Switzerland

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: USA: International Space Station

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Norway

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: St. Olav179

ncbi_submitter: Norwegian University of Science and Technology


ncbi_submitter: Zhejiang university


ncbi_isolation_source: Wound Secretion

ncbi_submitter: WTSI


ncbi_isolate: SPRUCE 435

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_strain_identifiers: SPRUCE 435

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: national health research institutes


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Black Sea sulfidic water cellulose enrichment

ncbi_organism_name: Lutibacter sp.

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: gut content

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Yale University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Shandong; Weifang

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: ShandongCDC


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sun-yat Sen University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Treponema porcinum

ncbi_submitter: AAFC


ncbi_country: China: JiangSu

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Portugal: Oporto

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: REQUIMTE-UCIBIO. Faculdade de Farmacia da Universidade do Porto.


ncbi_country: India: Kolkata

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of California Riverside


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: Guizhou University


ncbi_organism_name: Escherichia coli

ncbi_submitter: McGill University


ncbi_country: Taiwan: New Taipei

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: United Kingdom: Hatchlands

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: UWE


ncbi_country: Czech Republic

ncbi_isolation_source: bodily cavity

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_isolation_source: ballast tank

ncbi_organism_name: Arenibacter algicola

ncbi_submitter: Shandong university


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Christiangramia sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Streptomyces xanthochromogenes

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Streptomyces desertarenae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-011-08_S1_C2

ncbi_submitter: IGS


ncbi_country: China: Hangzhou

ncbi_isolation_source: anal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Eupithecia tripunctaria


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: EMG