ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Erythrobacter sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Canada: Calgary

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S3

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_assembly_level: Scaffold

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Campania; Salerno; Giffoni Valle Piana

ncbi_isolation_source: spleen; lymph nodes

ncbi_organism_name: Brucella abortus

ncbi_submitter: University of New Hampshire


gtdb_representative: t

ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Candidatus Methylomirabilis sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;x__unclassified Candidatus Methylomirabilis;s__Candidatus Methylomirabilis sp.


ncbi_assembly_name: freshwater MAG --- YR_bin-2518

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: BILS


ncbi_assembly_name: IMG-taxon 2693429870 annotated assembly

ncbi_organism_name: Rhodococcoides kroppenstedtii

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Mailhella sp.


ncbi_assembly_name: Rumen uncultured genome RUG14213

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Cellulophaga sp. 3_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EBI


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Oscillibacter valericigenes

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Desulfovibrionaceae bacterium


ncbi_assembly_name: freshwater MAG --- Umea1_bin-2036

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Rutgers University


ncbi_country: China: Jiangsu

ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_organism_name: Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris

ncbi_strain_identifiers: CECT 8597

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Netherlands: Paulina salt marsh

ncbi_isolation_source: sediment

ncbi_organism_name: Leeuwenhoekiella aestuarii

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Pseudanabaena sp.


ncbi_country: China

ncbi_isolation_source: Pleural effusion

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Shanghai CDC


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Sphingobium abikonense

ncbi_submitter: Tang lab


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Escherichia coli

ncbi_submitter: EMG


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Australia: Perth

ncbi_isolation_source: Retail table eggs

ncbi_submitter: Murdoch University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: Fecal samples

ncbi_submitter: INSERM UMR 1137


ncbi_organism_name: Lachnospiraceae bacterium AM90-07GAA


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: National Medicines Institute


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium 10-1


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Israel

ncbi_organism_name: Nostoc linckia z7

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: China: Jilin

ncbi_organism_name: Lactobacillus sp. M0392

ncbi_submitter: China Agricultural University


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroidota bacterium


ncbi_isolation_source: blood

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA1616

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA1616


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Treponema sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Weifang People's Hospital


ncbi_country: Denmark


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobium baderi

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain

ncbi_organism_name: Xanthomonas nasturtii

ncbi_submitter: University of Exeter


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_organism_name: Peptostreptococcus russellii


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alteromonas stellipolaris

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China: Xinjiang

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Agricultural Science


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: GNS Science


ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


ncbi_country: Portugal

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Mahidol University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_assembly_name: BPL

ncbi_country: Australia

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Burkholderia pseudomallei MSHR2138

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Ireland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_country: South Africa: Lokaleng Village; Mahikeng

ncbi_isolation_source: fecal sample from diarrhoea affected cattle A

ncbi_submitter: North-west University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_country: China: Shenzheng City; Guangdong Province

ncbi_isolation_source: pond water

ncbi_organism_name: Pannonibacter tanglangensis

ncbi_submitter: Shenzhen Center for Disease Control and Prevention


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Roseivirga thermotolerans

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_assembly_level: Chromosome

ncbi_country: USA: Spokane

ncbi_organism_name: Borrelia hermsii

ncbi_submitter: National Institute for Allergy and Infectious Diseases, National Institutes of Health


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_organism_name: Candidatus Nanogingivalis sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanogingivales;f__Candidatus Nanogingivalaceae;g__Candidatus Nanogingivalis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanogingivales;f__Candidatus Nanogingivalaceae;g__Candidatus Nanogingivalis;x__unclassified Candidatus Nanogingivalis;s__Candidatus Nanogingivalis sp.


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Polaromonas sp. LjRoot131

ncbi_submitter: Aarhus University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Bifidobacterium psychraerophilum

ncbi_submitter: Teagasc


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA4939

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA4939


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured bacterium


ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Zhejiang university


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Human feces

ncbi_organism_name: Clostridiales bacterium LMAG:78

ncbi_submitter: The University of Tokyo


ncbi_country: Cuba: Gardens of the Queen

ncbi_isolation_source: tissue

ncbi_organism_name: Pseudoalteromonas sp. bablab_jr004

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Denmark: Hilleroed; Olivier s garden; where birds go poop

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces coelicoflavus

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Longimicrobiales bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: BSN11 Closure

ncbi_country: USA: Detroit; MI

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Germany: Ploen

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis WI05

ncbi_submitter: Max-Planck-Institute for Evolutionary Biology


ncbi_country: Bulgaria

ncbi_organism_name: Escherichia coli

ncbi_submitter: U.S. Food and Drug Administration


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Limosilactobacillus agrestis

ncbi_submitter: University of Alberta


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Collierbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;x__unclassified Candidatus Collierbacteria;s__Candidatus Collierbacteria bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1476

ncbi_submitter: Broad Institute


ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cornell University


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Thailand

ncbi_isolation_source: rice root

ncbi_organism_name: Bacillus sp. 1021

ncbi_submitter: King Mongkut's Institute of Technology Ladkraabang

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 1021


ncbi_country: Poland

ncbi_organism_name: Providencia stuartii

ncbi_submitter: NanKai universit


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China:Zhejiang Province

ncbi_isolation_source: sputum

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Veillonella dispar


ncbi_country: South Korea

ncbi_isolation_source: mushroom

ncbi_organism_name: Pseudomonas sp. CHM02

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: wenzhou medical university


ncbi_country: Colombia

ncbi_isolation_source: Gastrointestinal

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_country: China: Hebei

ncbi_isolation_source: living meat pigeon with severe pneumonia signs

ncbi_organism_name: Chlamydia psittaci

ncbi_strain_identifiers: HJ

ncbi_submitter: BGI


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes


ncbi_country: China: Nanchang

ncbi_isolation_source: fermented soybeans

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Nanning City; Guangxi Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_submitter: Medical College of Yangzhou University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides fluxus

ncbi_submitter: EMG


ncbi_country: South Korea: Suwon

ncbi_isolation_source: soil

ncbi_organism_name: Luteolibacter luteus

ncbi_submitter: Kyonggi University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Alloscardovia omnicolens

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Wound

ncbi_strain_identifiers: MSSA


ncbi_country: USA: IL

ncbi_isolation_source: high protein dispersibility index (PDI) flour

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: East China University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_isolation_source: Excreted bodily substance

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: USA:Wyoming; Yellowstone National Park; Mouthful Geyser OF2 hot spring

ncbi_isolation_source: alkaline hot spring microbial mat

ncbi_organism_name: Roseiflexus sp.

ncbi_submitter: University of Minnesota


ncbi_country: Slovenia

ncbi_isolation_source: Wound smear

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DGA CBRN Defence Center


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Little Campbell River; British Columbia; Canada

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Memorial University of Newfoundland


ncbi_organism_name: Paraburkholderia caballeronis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Philippines

ncbi_isolation_source: potato

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Virginia Tech


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: NNAb 2478

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_country: India: Burabazar; Shillong; Meghalaya

ncbi_isolation_source: chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


gtdb_type_species_of_genus: t

ncbi_country: China

ncbi_isolation_source: hydrothermal system in shallow-sea

ncbi_organism_name: Pseudopontixanthobacter vadosimaris

ncbi_submitter: Xiamen University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: West Pacific

ncbi_organism_name: Alteromonas sp. B31-7

ncbi_submitter: shandong university


ncbi_country: United Kingdom

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_isolation_source: Biogas reactor

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: Sichuan University


ncbi_country: Poland: Koscierzyna

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas alloputida

ncbi_submitter: National Medicines Institute


ncbi_country: USA

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: JCVI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Corynebacterium diphtheriae INCA 402

ncbi_strain_identifiers: INCA 402

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces from Phil the wombat

ncbi_organism_name: Sphaerochaeta sp. Phil3

ncbi_submitter: University of Queensland


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Malaysia: Sabah

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Biotechnology Research Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: alginate 40-100 m particle (artificial) mid colonization

ncbi_organism_name: Octadecabacter sp. B2R22

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Sweden: Kalmar

ncbi_isolation_source: water

ncbi_organism_name: Sulfobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides stercorirosoris

ncbi_submitter: BGI


ncbi_country: Australia: Queensland

ncbi_isolation_source: intravascular catheter

ncbi_organism_name: Staphylococcus epidermidis AU12-03

ncbi_submitter: Griffith University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Brachybacterium rhamnosum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Salmonella sp. NW479

ncbi_submitter: Sichuan University


ncbi_organism_name: Arthrobacter rhombi

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: uncultured Caldilineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dysgonomonas sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Ectopseudomonas toyotomiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Universidad de La Rioja


ncbi_organism_name: Pseudoxanthomonas mexicana


ncbi_organism_name: Leucobacter sp.

ncbi_submitter: Nanjing University


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: Nunavut; Northern Canada; Alexandra Fiord

ncbi_isolate: AFD bin17

ncbi_isolation_source: soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_strain_identifiers: AFD bin17

ncbi_submitter: Monash University


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Microgenomates bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Candidatus Microgenomates;s__Candidatus Microgenomates bacterium


ncbi_country: South Korea

ncbi_isolation_source: sea sand

ncbi_organism_name: Paenibacillus silvestris

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Keri Norman's shared submissions


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus UCIM6119

ncbi_submitter: Broad Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_country: Mozambique: Manhica

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Staphylococcus aureus M71813


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: legume-root nodule

ncbi_organism_name: Rhizobium sp. N4311

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: CA

ncbi_isolation_source: intestine parakeet

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pararhizobium sp.

ncbi_submitter: University of Calgary


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Poultry

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SurvCARE


ncbi_organism_name: Sphingomonas sp. CFBP8993

ncbi_submitter: INRAE


ncbi_organism_name: Shigella flexneri

ncbi_submitter: CDC


ncbi_isolation_source: Distal colon

ncbi_organism_name: Lactobacillus johnsonii


ncbi_assembly_name: freshwater MAG --- KT6_bin-493

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pittsburgh


ncbi_country: Algeria: Ouargla

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Mexico: Huautla

ncbi_organism_name: Rhizobium etli bv. mimosae str. Mim1

ncbi_submitter: Centro de Ciencias Genomicas UNAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium etli;x__Rhizobium etli bv. mimosae;x__Rhizobium etli bv. mimosae str. Mim1


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Colon

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile P36

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus sp. AFS023182

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS023182


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 17

ncbi_submitter: Oregon State University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: The University of Queensland


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA: Chicago

ncbi_isolation_source: yogurt

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: NanJing University


ncbi_isolation_source: nasopharynx; normal mucosa

ncbi_organism_name: Neisseria cinerea

ncbi_strain_identifiers: CCUG 2156

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Canada: Alberta

ncbi_isolation_source: Retail ground beef

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Mycobacterium avium

ncbi_submitter: Friedrich-Loeffler-Institut, Institute of Molecular Pathogenesis


ncbi_isolation_source: Fruits and Vegetables

ncbi_organism_name: Lactiplantibacillus paraplantarum

ncbi_submitter: Rehman Medical Institute Peshawar, Pakistan


ncbi_country: Tanzania: KIGOMA

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: commercially available tea fungus beverage (Kombucha)

ncbi_organism_name: Komagataeibacter intermedius

ncbi_submitter: LM-UGent


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Arizona

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_country: Netherlands

ncbi_isolation_source: lung

ncbi_organism_name: Rodentibacter pneumotropicus

ncbi_submitter: University of Copenhagen


ncbi_country: Norway

ncbi_isolation_source: Retail sushi

ncbi_organism_name: Aeromonas bestiarum

ncbi_submitter: NTNU


ncbi_country: United Kingdom

ncbi_isolation_source: pig

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kedougou


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Hyphomonas sp. UBA4505

ncbi_submitter: University of Queensland


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae MU_NG5

ncbi_submitter: Read Laboratory, Emory University


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_country: South Korea:Jeonju

ncbi_isolation_source: Sputum

ncbi_submitter: Korea Basic Science Institute


ncbi_country: China: Dezhou

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Dezhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: Colon biopsy

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Arcobacter sp. 7ABA8

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Enterobacter cloacae complex sp. 366D7

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 366D7


ncbi_organism_name: Micromonospora sp. GCM10011541

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Nacional de Rehabilitacion Luis Guillermo Ibarra Ibarra


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus VP2007-007

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus VP2007-007


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_assembly_name: freshwater MAG --- AlinenSediments_bin-3941

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Croceibacter atlanticus

ncbi_submitter: EMG


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_submitter: University of Tehran


ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salinisphaera sp. PC39

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: United Kingdom: Melton Mowbray

ncbi_isolation_source: Metal working fluids

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University of Lausanne


ncbi_organism_name: Enterobacter cloacae complex sp. E.c70

ncbi_submitter: City University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. E.c70


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Fusobacterium ulcerans

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Bangladesh

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: Canada: Douglas Channel

ncbi_isolation_source: dilbit-coated clay beads in seawater

ncbi_organism_name: Cycloclasticus sp.

ncbi_submitter: National Research Council Canada


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacteroidales bacterium M2

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M2


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University Hong Kong


ncbi_assembly_name: freshwater MAG --- VK3_bin-0953

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Clinical; chronic granulomatous disease - lung abscess

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Indian Ocean: Bay of Bengal

ncbi_isolation_source: sediment

ncbi_organism_name: Streptomyces marincola

ncbi_strain_identifiers: SCSIO 03032

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_submitter: Oklahoma State University


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: East China Normal University


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Seoul National University


ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Michigan


ncbi_country: Mauritius

ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: Mauritius

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water spring sample 30 PSU in less than .8 micron size fraction

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Clemson University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_01_FULL_51_21


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environmental surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis EnGen0220

ncbi_submitter: Broad Institute


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: University of Florida


ncbi_assembly_name: Rumen uncultured genome RUG13327

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Switzerland

ncbi_submitter: University of Lausanne


ncbi_organism_name: uncultured Dictyobacter sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Arthrobacter sp. SAFR-023

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Scripps Institution of Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: EMG


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 1675

ncbi_isolation_source: feces

ncbi_organism_name: Propionibacterium sp.

ncbi_strain_identifiers: CIM:MAG 1675

ncbi_submitter: Mayo Clinic


ncbi_country: China

ncbi_isolation_source: Respiratory swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: USA: Massachusetts; Woods Hole; School Street Marsh

ncbi_isolation_source: mud

ncbi_organism_name: Desulfovibrio desulfuricans

ncbi_submitter: University of Missouri Columbia


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: USA: Oak Ridge TN

ncbi_isolation_source: saliva

ncbi_organism_name: Schaalia sp. ORNL0103

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: China: Shenzhen

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: BGI


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA7886

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA7886


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: forest soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: IMG-taxon 2593339239 annotated assembly

ncbi_organism_name: Luteibacter sp. UNCMF331Sha3.1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Erysipelotrichales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Chicago


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Georgia


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: GNS Science


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: SPRUCE 623

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 623

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Salmonella sp. M163

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gaiella sp.


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV3323

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV3323


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: BesevlerB

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Ireland

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University College Cork


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: Halarcobacter sp.

ncbi_submitter: Quanzhou Normal University


ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Virchow


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: National Medicines Institute


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Jinshan Hospital, Shanghai Medical College, Fudan University


ncbi_organism_name: Cocleimonas sp. KMM 6895

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry


ncbi_country: Belgium

ncbi_isolation_source: tracheal aspiration

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 3-475-03_S4_C1

ncbi_submitter: IGS


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli 2-177-06_S3_C2


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_submitter: National Institutes of Health, Malaysia


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Australia: Tasmania

ncbi_isolation_source: hind gut digesta

ncbi_organism_name: Aliivibrio finisterrensis

ncbi_submitter: University of Tasmania


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured Mesohalobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: EMG


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhongshan City People's Hospital


ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Memorial Sloan Kettering Cancer Center


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificota bacterium

ncbi_submitter: Portland State University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_name: Deltaproteobacteria bacterium Ga0077539

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Deltaproteobacteria bacterium Ga0077539

ncbi_submitter: University of Glasgow

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium Ga0077539


ncbi_organism_name: Sphingobium xanthum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Caenicola nitritireducens

ncbi_submitter: This work was supported by PHC Toubkal/15/19-32545NB French Moroccan project


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Germany: Hainich National Park; Hainich Critical Zone Exploratory

ncbi_isolation_source: groundwater from well H41 incubated with 12C bicarbonate for 21 days

ncbi_organism_name: Methyloversatilis discipulorum

ncbi_submitter: Friedrich Schiller University Jena


ncbi_country: Brazil: Minas Gerais; Belo Horizonte

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: New South Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Huintestinicola sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R23(2017)

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: SEMIA 5019

ncbi_submitter: University of Regina


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: rumen

ncbi_organism_name: Christensenella sp. UBA2843

ncbi_submitter: University of Queensland


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Chicago


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Rhodanobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Monash University


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. holarctica;x__Francisella tularensis subsp. holarctica FSC022


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Sweden

ncbi_isolation_source: bovine milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_organism_name: Sulfobacillus thermotolerans

ncbi_strain_identifiers: AMEE

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus thermotolerans


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG10153

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Thailand: Samut Songkhram

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Chulalongkorn University


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: USA: LA

ncbi_isolation_source: environment gulf coast

ncbi_organism_name: Vibrio parahaemolyticus 98-513-F52

ncbi_submitter: FDA/CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 98-513-F52


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Peribacter sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__Candidatus Peribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;g__Candidatus Peribacter;x__unclassified Candidatus Peribacter;s__Candidatus Peribacter sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Holdemania massiliensis


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Leptolyngbya sp. LCM1.Bin17

ncbi_submitter: University of Calgary


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Achromobacter denitrificans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC013433

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Philippines

ncbi_isolation_source: adult female

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Colroado Anschutz Medical Campus


ncbi_country: Mexico

ncbi_isolation_source: Swine Farm

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_country: USA: Massachusetts

ncbi_isolation_source: clinical

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: OLM 10

ncbi_submitter: North Carolina State University


ncbi_isolation_source: blood

ncbi_submitter: The Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 2010K-0286


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Minnesota

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Minnesota


ncbi_organism_name: Plantactinospora sp. B24E8

ncbi_submitter: Ondokuz Mayis university


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: uncultured Rubrivivax sp.


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: AIMST University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Verona, Italy


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Germany

ncbi_isolation_source: milk

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Alberta

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_organism_name: Candidatus Nitrotoga sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Rahnella contaminans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North South University


ncbi_organism_name: Panacagrimonas sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Hylemonella sp. W303a

ncbi_submitter: National Centre for Cell Science


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B069;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_assembly_name: freshwater MAG --- YR2_bin-0254

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom: London

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_submitter: EMG


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: environmental isolate

ncbi_submitter: Institute for Molecular Genetics and Genetic Engineering


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Luzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Center for Laboratory Medicine


ncbi_organism_name: Streptomyces sp. NPDC048577


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Federal University of Sao Paulo


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_strain_identifiers: ISU 994

ncbi_submitter: USDA-ARS


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Streptosporangium sp. NPDC006930

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevundimonas sp. UBA7506

ncbi_submitter: University of Queensland


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_assembly_name: freshwater MAG --- Loc090519-6m_bin-0424

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Japan

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: South China Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG13681

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB36

ncbi_submitter: Soochow University


ncbi_isolate: Sphingomonas sp. AX6

ncbi_organism_name: Sphingomonas sp. AX6

ncbi_strain_identifiers: Sphingomonas sp. AX6

ncbi_submitter: Elham Karimi


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Medical Center Goettingen


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu

ncbi_organism_name: Acinetobacter sp. YH12113


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Streptococcus agalactiae GB00865

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Israel

ncbi_isolation_source: rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: tel-aviv sourasky medical center


ncbi_country: Ethiopia: Oromia; East Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Rhodanobacteraceae bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: CF sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ghent University


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia seminalis

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Acidovorax sp. WCS2018Cala2-16

ncbi_submitter: Utrecht University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces angustmyceticus

ncbi_submitter: Wuhan University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Salmonella sp. NW1079

ncbi_submitter: Sichuan University


ncbi_organism_name: K189A clade bacterium

ncbi_submitter: Institut de Ciencies del Mar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__K189A clade;s__K189A clade bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Catenibacterium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Otago


ncbi_isolation_source: pond water

ncbi_submitter: UW-GEL (University of Wisconsin - Genome Evolution Laboratory)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens ATCC 13880


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: Antarctica: Cape Evans; Ross Sea Region

ncbi_isolation_source: gamma-irradiated soil

ncbi_organism_name: Paenibacillus darwinianus

ncbi_submitter: University of Auckland


ncbi_country: Pakistan

ncbi_isolation_source: throat

ncbi_organism_name: Serratia marcescens

ncbi_submitter: FDA


ncbi_country: Germany: Forest near Ammerbach; Jena

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Leibniz Institute for Natural Product Research and Infection Biology


ncbi_country: Italy

ncbi_isolation_source: CSF

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Chile: Edge of the Laguna Chaxa

ncbi_isolation_source: Halite encrusted soil (top 2 cm); vegetation free

ncbi_organism_name: Amycolatopsis sp. KNN50.9b

ncbi_submitter: University of Tuebingen


ncbi_country: Slovenia

ncbi_organism_name: Prevotella communis

ncbi_submitter: University of Ljubljana


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Pseudomonas orientalis

ncbi_submitter: University of Technology Sydney


ncbi_country: Australia

ncbi_isolation_source: RESIDENTIAL AGED CARE FACILITY

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of South Australia


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: BGI


ncbi_country: Greece: Aegean Sea

ncbi_isolation_source: marine sponge microbiome

ncbi_organism_name: Leptothoe kymatousa TAU-MAC 1615

ncbi_strain_identifiers: TAU-MAC 1615

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Chlamydia felis Fe/C-56

ncbi_submitter: Japanese Consortium/Yamaguchi Univ.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia felis;x__Chlamydia felis Fe/C-56


ncbi_assembly_name: Rumen uncultured genome RUG10961

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG14821

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Agrobacterium radiobacter

ncbi_submitter: National Academy of Agrarian Sciences of Ukraine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Universidad de Cadiz


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Methylophilus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Micropepsaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Sphingobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-3311

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Chloroflexota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1702

ncbi_submitter: Broad Institute


ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: ROS

ncbi_isolate: ROS

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: ROS

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: France

ncbi_isolation_source: forestomach

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: University of Alberta


ncbi_country: China

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Acinetobacter sp. SWAC57

ncbi_submitter: SOUTHWEST MEDICAL UNIVERSITY


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: not provided

ncbi_organism_name: Veillonella parvula


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut


ncbi_organism_name: Leptolyngbya sp. NM2-A1

ncbi_submitter: Institute of Hydrobiology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Allobaculum sp.


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Pseudomonas sp. WP18

ncbi_submitter: Mississippi State University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: environment

ncbi_organism_name: Vibrio parahaemolyticus S174

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S174


ncbi_assembly_name: Rumen uncultured genome RUG465

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Germany

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Corvallis; Benton Co.; OR

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: USDA


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University