ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: RKI 400DKa

ncbi_submitter: National Research and Innovation Agency


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Brazil: Blumenau

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: freshwater MAG --- Loc081215-4m_bin-2117

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_assembly_name: freshwater MAG --- VK2_bin-0761


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: OH

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_assembly_level: Complete Genome

ncbi_country: Taiwan

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Fizz

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Pleomorphomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Haliangiales bacterium


ncbi_organism_name: Chlorobium phaeobacteroides DSM 266

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: DSM 266

ncbi_submitter: US DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;f__Chlorobiaceae;x__Chlorobium/Pelodictyon group;g__Chlorobium;s__Chlorobium phaeobacteroides;x__Chlorobium phaeobacteroides DSM 266

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Wuhan

ncbi_isolation_source: Environment

ncbi_organism_name: Burkholderia sp. HAN2018

ncbi_submitter: HuaZhong Agricultural University


ncbi_country: Germany

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22694;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA: MD

ncbi_isolation_source: post chill chicken carcass

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Ireland

ncbi_isolation_source: powdered infant formula production environment

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Guangdong Academy of Sciences


ncbi_country: USA: Oklahoma

ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The Ohio State University


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Ireland: Wexford

ncbi_isolation_source: soil samples from lysimeters set up in Teagasc; ENVO:00002141

ncbi_organism_name: Escherichia coli

ncbi_submitter: National University or Ireland, Galway


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: India

ncbi_isolation_source: deep sea sediment of Lakshadweep

ncbi_organism_name: Domibacillus indicus

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Guam: San Louis Beach; Santa Rita

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: University of California, San Diego

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bradymonadales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_organism_name: Serratia nevei

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hangzhou Medical University


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_submitter: University of Basel


ncbi_organism_name: uncultured Cardiobacterium sp.


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolate: XDR-PA

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Hong Kong

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 302

ncbi_organism_name: Staphylococcus arlettae

ncbi_strain_identifiers: SNUC 4935

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Acidimicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Aminobacterium sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Acetobacter sp. DmW_125123

ncbi_submitter: Brigham Young University


ncbi_organism_name: Bacteroides uniformis


ncbi_country: Italy

ncbi_isolation_source: urine

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: USUHS


ncbi_country: USA: Louisiana

ncbi_isolation_source: leaves

ncbi_organism_name: Robbsia andropogonis Ba3549


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_country: Turkey

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Legionella sp. PATHC039

ncbi_submitter: Danish Technical University


ncbi_country: China: Guangdong

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Singapore

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China: Nanjing

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium casei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Comamonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Brazil: state Rio Grande do Sul

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: University of Bern


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M017S1

ncbi_submitter: Universite de Montreal


ncbi_submitter: King Abdulaziz University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Peptoniphilus lacrimalis

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: obtained by multistage selection from a strain isolated from a natural source

ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: NRC Kurchatov Institute


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_country: Hungary

ncbi_isolation_source: tumor tissue

ncbi_organism_name: Rhizobium nepotum 39/7

ncbi_submitter: University of Belgrade, Faculty of Agriculture


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The  First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_submitter: Ausgem


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China

ncbi_isolation_source: wastewater from WWTP

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_country: Canada: Quebec City

ncbi_isolation_source: sputum

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_assembly_name: I-151 clc bio denovo

ncbi_country: Germany

ncbi_submitter: University Hospital Muenster

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O174:H46;x__Escherichia coli STEC O174:H46 str. I-151


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agriculture University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thermomicrobiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pig Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_assembly_name: GS De Novo Assembly

ncbi_country: India: Nagpur

ncbi_isolation_source: mobile toilet constructed at NEERI premises

ncbi_organism_name: Morganella sp. EGD-HP17

ncbi_submitter: National Environmental Engineering Research Institute-CSIR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Morganella;x__unclassified Morganella (in: enterobacteria);s__Morganella sp. EGD-HP17


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: USA: Georgia

ncbi_organism_name: Photorhabdus temperata

ncbi_strain_identifiers: Hm

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: hyacinth bulb; basal plate

ncbi_organism_name: Rahnella aquatilis

ncbi_submitter: University of Gdansk, Intercollegiate Faculty of Biotechnology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Leeuwenhoekiella palythoae

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Pelolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Izemoplasma sp.

ncbi_submitter: Leibniz Institute of Freshwater Ecology and Inland Fisheries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;x__unclassified Candidatus Izemoplasma;s__Candidatus Izemoplasma sp.


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 04T2B

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_country: China: Hangzhou

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: uncultured Acetatifactor sp.


gtdb_type_species_of_genus: t

ncbi_organism_name: Pseudoramibacter alactolyticus

ncbi_submitter: University of Toronto


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: McMaster University


ncbi_organism_name: Blautia stercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Zhejiang university


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-9699

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Eikenella halliae

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Dysosmobacter sp.


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Japan

ncbi_organism_name: Thermosporothrix hazakensis

ncbi_strain_identifiers: ATCC BAA-1881

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean: Caroline Seamounts

ncbi_organism_name: Exiguobacterium sp. s16

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s16


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Igbinedion University Okada Edo state Nigeria


ncbi_organism_name: Tenuifilum sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Oceanospirillaceae bacterium


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: Icahn School of Medicine at Mount Sinai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Mouldy hay

ncbi_organism_name: Streptomyces albus

ncbi_submitter: CKDBiO Corporation


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus argensis

ncbi_submitter: BGI


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: CAU


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Pseudomonas luteola

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Moldova

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: Spain: off the coast of Alicante

ncbi_isolate: MedPE-SWchi

ncbi_isolation_source: Mediterranean seawater enriched with a specific particulate matter

ncbi_organism_name: Roseobacter sp. MedPE-SWchi

ncbi_strain_identifiers: MedPE-SWchi

ncbi_submitter: University Miguel Hernandez


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Agricultural Bioresources Research Institute


ncbi_organism_name: Macrococcoides goetzii

ncbi_submitter: Teagasc Food research


ncbi_country: USA: IA

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Achromobacter xylosoxidans C54

ncbi_submitter: Broad Institute


ncbi_organism_name: Anaerocolumna aminovalerica

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: USA: Cincinnati

ncbi_isolation_source: feces from pateint 25

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Miami University


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-169

ncbi_submitter: JCVI


ncbi_country: Australia

ncbi_strain_identifiers: BUT 6

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira fainei;x__Leptospira fainei serovar Hurstbridge;x__Leptospira fainei serovar Hurstbridge str. BUT 6


ncbi_country: India

ncbi_organism_name: Exiguobacterium indicum

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium indicum


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_assembly_name: freshwater MAG --- VK_bin-4364

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Marinoscillum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Korea: Seoul

ncbi_isolation_source: Burn Patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Korea National Institute of Health, Korea Centers for Disease Control & Prevention


ncbi_submitter: National Institute for Communicable Disease


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: North Carolina

ncbi_isolation_source: root

ncbi_organism_name: Herbaspirillum sp. YR522

ncbi_submitter: Oak Ridge National Lab


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Pseudobutyrivibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Guatemala

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: USA: Austin; Texas

ncbi_organism_name: Streptomyces sp. t39

ncbi_submitter: Cornell University


ncbi_country: United Kingdom

ncbi_isolation_source: Retropharyngeal lymph node abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Brachyspira pulli

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Colwellia marinimaniae

ncbi_submitter: National Institute of Technology, Wakayama College


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Empedobacter sp. UBA3475

ncbi_submitter: University of Queensland


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: China: Shanghai City

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_submitter: University of central Florida


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dolosigranulum savutiense

ncbi_submitter: Duke University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Tehran


ncbi_country: New Zealand

ncbi_organism_name: Rathayibacter rathayi

ncbi_submitter: University of Idaho


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori GAM239Bi

ncbi_submitter: Washington University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Haliscomenobacter hydrossis DSM 1100

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: groundwater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Charles University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Toho university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Stenotrophomonas indicatrix


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_country: USA

ncbi_isolation_source: food processing facility

ncbi_organism_name: Flavobacteriaceae bacterium PS02336

ncbi_submitter: Penn State University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: not known


ncbi_country: China: Anshan

ncbi_isolation_source: sediment

ncbi_organism_name: Aeromonas bestiarum

ncbi_submitter: Dalian Ocean University


ncbi_country: Brazil: MG; Sete Lagoas

ncbi_isolation_source: ear

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Embrapa Maize and Sorghum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Princeton University


ncbi_country: Sweden

ncbi_isolation_source: water

ncbi_organism_name: Caulobacter sp. CCUG 60055

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: USA: Houston

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: FL

ncbi_isolation_source: intestine primate

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: laboratory strain obtained from Caenorhabditis Genetics Center (CGC)

ncbi_organism_name: Escherichia coli OP50

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: wenzhou Medical university


ncbi_country: Japan: Hyogo

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: National Agriculture and Food Research Organization (NARO)


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Germany: Koln

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: urine

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Waltera sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces griseorubiginosus

ncbi_submitter: USDA Agricultural Research Service


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Chromatiales bacterium


ncbi_organism_name: Streptomyces sp. NPDC058430

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Burkholderiaceae bacterium


ncbi_organism_name: Peptococcaceae bacterium


ncbi_organism_name: Acinetobacter gandensis

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Lichenihabitans sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Candidatus Brocadiaceae bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__unclassified Candidatus Brocadiaceae;s__Candidatus Brocadiaceae bacterium


ncbi_isolation_source: pig gut metagenome


ncbi_country: USA: New York state

ncbi_isolation_source: Liquid skim milk CLT

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cornell University


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Spain: Asturias

ncbi_isolation_source: Cabrales Cheese

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: IPLA-CSIC


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: INRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Roseburia inulinivorans


ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES Ploufragan


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: China: Hunan

ncbi_isolation_source: patient with infection

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Corynebacterium diphtheriae


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: caecum

ncbi_organism_name: Olsenella sp. An188

ncbi_submitter: Veterinary Research Institute


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Desulfurellaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Nitrospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lausanne University Hospital


ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_country: Croatia

ncbi_isolation_source: Human; stool

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gimesia sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Virginia

ncbi_isolation_source: soil

ncbi_organism_name: Paraburkholderia hayleyella

ncbi_submitter: Washington University in St. Louis


ncbi_country: China

ncbi_organism_name: Bradyrhizobium aeschynomenes

ncbi_submitter: Yantai Institute of Coastal Zone Research


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_submitter: sichuan university


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: South Korea

ncbi_isolation_source: nuts

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_organism_name: Microcystis sp.

ncbi_submitter: University of Michigan


ncbi_assembly_name: WHOL

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_strain_identifiers: WHO L

ncbi_submitter: WTSI


ncbi_organism_name: Lacrimispora indolis SR3

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: spoiled uncooked beef

ncbi_organism_name: Clostridium estertheticum subsp. laramiense

ncbi_submitter: AgResearch


ncbi_assembly_level: Chromosome

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Institute of Advanced Study in Science and Technology (IASST)


ncbi_country: Italy: Firenze

ncbi_isolation_source: blood

ncbi_submitter: Pseudomonas Italian work group


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. P-M58

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Taiwan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: SAWA

ncbi_submitter: National Chung Cheng University


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__environmental samples;s__uncultured Candidatus Marinamargulisbacteria bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: lungs

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: nasal mucosa

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly


ncbi_assembly_name: IMG-taxon 2684623039 annotated assembly

ncbi_organism_name: Stappia sp. ES.058

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_organism_name: Candidatus Saccharimonadaceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;x__unclassified Candidatus Saccharimonadaceae;s__Candidatus Saccharimonadaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli B093

ncbi_submitter: Broad Institute


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pelistega suis

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: soil collected from a gold-copper mine

ncbi_organism_name: Mucilaginibacter rubeus

ncbi_submitter: Institute of Environmental Microbiology


ncbi_organism_name: Candidatus Eremiobacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Candidatus Eremiobacterales;f__Candidatus Eremiobacteraceae;x__unclassified Candidatus Eremiobacteraceae;s__Candidatus Eremiobacteraceae bacterium


ncbi_submitter: Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;x__unclassified Klebsiella pneumoniae complex;s__Klebsiella pneumoniae complex sp. WS2972


ncbi_organism_name: Proteus sp. G4390

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4390


ncbi_organism_name: Limimaricola variabilis

ncbi_submitter: Gloucester Marine Genomics Institute


ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_isolation_source: stool sample

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Lebanon

ncbi_isolation_source: Perianal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Balamand


ncbi_country: China: Zhejiang

ncbi_isolation_source: urine

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: not collected: not available

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: University of Chicago


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Holdemanella porci

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii TG15236

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: Australia: Victoria

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Iowa State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium flavescens

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 30

ncbi_strain_identifiers: CHS 30

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 30


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eubacterium limosum

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Chile: Mafil

ncbi_isolation_source: Cankerous wood

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: INIA Rayentue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus sp. Gnz1/2

ncbi_submitter: State Research Center for Applied Microbiology and Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Gnz1/2


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Pseudaminobacter sp. NGMCC 1.201702

ncbi_submitter: Institute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences


ncbi_organism_name: Salmonella sp. NW594

ncbi_submitter: Sichuan University


ncbi_organism_name: Stappia sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Serratia sp. (in: enterobacteria)

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. (in: enterobacteria)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_assembly_name: freshwater MAG --- MJ111018B_bin-0014

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces sp. NPDC058650

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Kangiellaceae bacterium


ncbi_country: USA:Durham; North Carolina

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Duke University


ncbi_country: Brazil:Sao Paulo; Santos

ncbi_isolation_source: Sewer

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GP01-A15

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Corynebacterium sp. KPL1814

ncbi_submitter: Broad Institute


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Alicyclobacillaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG12564

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Cultivated yellowtail

ncbi_organism_name: Photobacterium damselae

ncbi_submitter: FDA/CFSAN


ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; feces

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Haruko Takeyama Lab., Waseda University


ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: National Chung Hsing University


ncbi_organism_name: Streptomyces netropsis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Arizona

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_isolation_source: metagenome

ncbi_organism_name: Halomonas campaniensis


ncbi_country: India: Mumbai

ncbi_isolation_source: Biological Sample

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Christian Medical College


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Caecum


ncbi_country: USA: Tennessee

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Fusobacterium gonidiaformans

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nagoya University


ncbi_country: China: Guangdong

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA

ncbi_isolation_source: CF Sputum

ncbi_organism_name: Bordetella genomosp. 9

ncbi_submitter: University of Michigan


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_isolation_source: mud slough

ncbi_organism_name: Hyphomonas johnsonii MHS-2

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_assembly_name: freshwater MAG --- Umea2_bin-3384

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Brevibacterium salitolerans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Microbispora corallina


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_submitter: the First Affiliated Hospital of Guangzhou Medical University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Neisseria sp. MVDL18-041461

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Polyangiaceae bacterium


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_country: China: Qinghai

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Yakult Central Institute


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gemelliphila asaccharolytica

ncbi_submitter: EMG


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: freshwater lake Microcystis colony

ncbi_organism_name: Burkholderia sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_isolation_source: creek water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Indian Institute of Technology Kharagpur


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Estonia: Saaremaa

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: JCVI


ncbi_organism_name: Moraxella sp. CTOTU48841


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_organism_name: uncultured Alteromonadaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC091281

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: New York

ncbi_isolation_source: nymph

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Columbia University


ncbi_organism_name: Campylobacter hyointestinalis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Poland: Poznan

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: National Medicines Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: AAFC


ncbi_organism_name: Aeromonas hydrophila subsp. ranae

ncbi_submitter: UCONNMISEQ


ncbi_assembly_name: uncultured Cardiobacteriales EG18N_Bin6

ncbi_isolation_source: Octocoral

ncbi_submitter: iBB-IST


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: University of Adelaide


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Chloroflexota bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_organism_name: Bacillus cereus group sp. BceL114

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL114


ncbi_organism_name: Acetobacter sp. KSO5

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__environmental samples;s__uncultured Candidatus Saccharimonadales bacterium


ncbi_assembly_name: Kle_pne IVRI_FBI_608

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Gaungdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_submitter: Institut Pasteur


ncbi_country: Japan: Ago Bay; Honshu

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Hawaii-Manoa


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean:Western Pacific Ocean

ncbi_isolation_source: marine sediments

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_isolation_source: anammox reactor sludge

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Peking University


ncbi_organism_name: bacterium D16-50


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Escherichia sp. 1_1_43

ncbi_submitter: Broad Institute


ncbi_organism_name: Rubritepida sp.

ncbi_submitter: University of Queensland


ncbi_country: Mexico: Chiapas

ncbi_isolation_source: nodules

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Universidad Tecnologica de la Selva


ncbi_country: Japan:Shizuoka; Izu peninsula

ncbi_isolation_source: soil around hot spring

ncbi_organism_name: Hydrogenophilus thermoluteolus

ncbi_submitter: Department of Biotechnology, The University of Tokyo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp1 AA134

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp1 AA134

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Acetobacterium sp. UBA6819


ncbi_country: Czech Republic: Jicin

ncbi_isolation_source: Rectal swab

ncbi_submitter: Charles University in Pilsen


ncbi_country: Canada: Montreal

ncbi_isolation_source: Hospital sink

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolate: SPRUCE 116

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 116

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Italy: Palermo

ncbi_isolation_source: transport medium

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: S.Orsola-Malpighi University Hospital


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Zhejiang university


ncbi_country: Canada: Ontario

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Streptomyces sp. HB202

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: Colon

ncbi_organism_name: Brachyspira hampsonii


ncbi_country: Malaysia

ncbi_isolation_source: Pus Culture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: Pediatrics Bacteriology, Kyushu univercity


ncbi_country: USA: Alachua County; Florida

ncbi_isolation_source: feces

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University of Florida


ncbi_organism_name: Ligilactobacillus animalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Morganella morganii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 1

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0610

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_isolation_source: Slurry

ncbi_submitter: University of Nottingham


ncbi_country: Japan

ncbi_isolation_source: psittacosis outbreak

ncbi_organism_name: Chlamydia psittaci Mat116

ncbi_submitter: Laboratory of Veterinary Microbiology, Faculty of Applied Biological Sciences, Gifu University


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Sweden

ncbi_isolation_source: mouth

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: TAILORED-Treatment project


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Mameliella sp. MMSF_3510

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Amedibacillus dolichus

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: samples of compost

ncbi_organism_name: Arenimonas composti TR7-09 = DSM 18010

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Arenimonas;s__Arenimonas composti;x__Arenimonas composti TR7-09 = DSM 18010


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Sphingobacterium sp.


ncbi_country: Tanzania

ncbi_isolation_source: Wound


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 1

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Wyoming


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Shanxi

ncbi_isolation_source: Mastitis Milk

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. dysgalactiae


ncbi_submitter: Medical Mycology Research Center


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: AAFC


ncbi_organism_name: Roseburia inulinivorans


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Bern


ncbi_organism_name: Escherichia coli

ncbi_submitter: Insititute of Agrobiotecnology


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_organism_name: Clostridium botulinum C str. Eklund

ncbi_strain_identifiers: Eklund

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum C;x__Clostridium botulinum C str. Eklund


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1481

ncbi_submitter: Broad Institute


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella sp. K5-122

ncbi_submitter: Institute of Marine research


ncbi_country: Denmark: Hovedstaden;Copenhagen

ncbi_isolation_source: Proficiency Panel Isolate

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Jiangsu

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Coquitlam

ncbi_isolation_source: Apodemus sylvaticus Tissue Culture

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: Cooling tower water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_country: China: Beijing

ncbi_isolation_source: artificial municipal wastewater in bioreactor

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Peking University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 2346

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_organism_name: Ignavibacteria bacterium RBG_16_34_14

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium RBG_16_34_14


ncbi_country: USA: New York

ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: University of Chicago


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Khon Kaen University


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Groningen


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Mucispirillaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Laboratory of Veterinary Bacteriology UFRGS


ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human stool

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: DOE JGI


ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. SID8016

ncbi_submitter: University of Wisconsin Madiso


ncbi_country: South Africa: Onderstepoort

ncbi_isolation_source: Semen sample

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: University of Pretoria


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_country: China

ncbi_isolation_source: thermophilic anaerobic digestion

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: urine

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: North West University


ncbi_organism_name: Blautia faecis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Deltaproteobacteria bacterium UBA4796

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA4796


ncbi_country: USA: California; Middletown

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_isolation_source: BAL

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Streptomyces sp. NPDC096323

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Microgenomates bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Candidatus Microgenomates;s__Candidatus Microgenomates bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Australia: NSW

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Geobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: South Korea

ncbi_isolation_source: automobile ACS

ncbi_organism_name: Methylorubrum sp. DB1722

ncbi_submitter: Chung ang university


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Sedimenticola sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes finegoldii


ncbi_country: USA: Idaho

ncbi_isolation_source: biofilm from outdoor freshwater natural spring

ncbi_organism_name: Pseudomonas rubra

ncbi_submitter: University of Connecticut Graf Lab


ncbi_country: Kenya

ncbi_organism_name: Porphyromonadaceae bacterium UBA6478

ncbi_submitter: University of Queensland


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: China Agricultural University


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: parotidectomy

ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: AW

ncbi_submitter: Universite Paris Sud


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Mexico: Sinaloa; Presa Adolfo Lopez Mateos

ncbi_isolation_source: river sediment

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A.C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: Poland

ncbi_organism_name: Yersinia enterocolitica subsp. palearctica

ncbi_submitter: Institute of Microbiology, Faculty of Biology, University of Warsaw, Poland


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge microbiome low temperature; high CO2

ncbi_organism_name: Candidatus Multivorans thiocomprendens

ncbi_submitter: Australian Institute of Marine Science

ncbi_taxonomy: d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;f__Candidatus Multivoraceae;g__Candidatus Multivorans;s__Candidatus Multivorans thiocomprendens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;f__Candidatus Multivoraceae;g__Candidatus Multivorans;s__Candidatus Multivorans thiocomprendens


ncbi_organism_name: Candidatus Pelethousia gallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Pelethousia;s__Candidatus Pelethousia gallinarum


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: skin

ncbi_organism_name: Microbacterium timonense

ncbi_submitter: URMITE


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_country: India: Chennai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Karolinska Insitutet


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces from Phil the wombat

ncbi_organism_name: Ruminococcus sp. Phil11


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Oceanospirillaceae bacterium UBA4576


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Colombia: San Andres

ncbi_isolation_source: water

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Siminovitchia thermophila

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Yonsei University


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Paratractidigestivibacter faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: fermentation

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Benin

ncbi_isolation_source: gari

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Neolewinella antarctica


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0630

ncbi_submitter: Broad Institute


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Canada: Cow bay; Novo Scotia

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudoalteromonas carrageenovora

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_country: Colombia

ncbi_isolation_source: Post surgical secretion

ncbi_organism_name: Staphylococcus aureus DAR5827


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: Antarctica

ncbi_isolation_source: antarctic marine sponge

ncbi_organism_name: Pseudoalteromonas sp. TB25

ncbi_submitter: University of Florence


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Italy: Veneto

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Serratia plymuthica

ncbi_submitter: The Institute of Chemical Biology and Fundamental Medicine SB RAS


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_country: USA: AK

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Chengdu

ncbi_isolation_source: Pork meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: China: Hunan

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Italy

ncbi_isolation_source: large colon

ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: University of Calgary


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Italy: Florence

ncbi_isolation_source: pharyngeal swab

ncbi_submitter: University of Trento


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Enterocloster sp.


ncbi_organism_name: Clostridiaceae bacterium AF02-42

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_organism_name: Candidatus Neomicrothrix sp.

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp.


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of Washington


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Streptomyces sp. NBC_00197

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Vibrio sp. TRT 29B02

ncbi_strain_identifiers: TRT 29B02

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__unclassified Vibrio;s__Vibrio sp. TRT 29B02


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Kamakura Women's University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Brucella rhizosphaerae

ncbi_submitter: Animal and Plant Health Agency


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: McMaster University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Enterobacterales bacterium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: College of Veterinary medicine and Research Institute, Seoul National University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Anaerolineae bacterium


ncbi_country: Antarctica: Mackay Glacier regions; Mount George Murray

ncbi_isolation_source: mineral soil

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Montana State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Parabacteroides sp.