ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Yersinia intermedia

ncbi_submitter: SRCAMB


ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


gtdb_representative: t

ncbi_country: China: Shangzhi

ncbi_isolation_source: cow dung

ncbi_organism_name: Microbacterium helvum

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: NEAU-LLC

ncbi_submitter: School of life science

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Contig

ncbi_country: Australia: Heron Island

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Simkania sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Cryobacterium sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Black-collared Starling

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: freshwater MAG --- D-3_bin-19

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_organism_name: Roseburia intestinalis M50/1

ncbi_submitter: MetaHIT


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1150

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Methylobacter sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: spacecraft surface

ncbi_organism_name: Paenibacillus motobuensis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Microlunatus endophyticus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Salmonella sp. NW499

ncbi_submitter: Sichuan University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Salmonella sp. C3264


ncbi_submitter: University of Calgary


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Defluviitaleaceae bacterium


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: freshwater MAG --- Loc080925-5m_bin-0372

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: WA; Canna

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. CA7

ncbi_submitter: Curtin University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wildermuthiibacteriota;s__Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_01_FULL_45_20


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Portugal

ncbi_isolation_source: Hospitalized patient

ncbi_organism_name: Enterococcus faecium EnGen0049

ncbi_submitter: Broad Institute


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jeonbuk National University


ncbi_country: Australia: Queensland

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: Colorado State U


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Chromobacterium violaceum

ncbi_submitter: University of Malaya


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: China:Hubei; Huanggang

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: anammox marine column reactor biofilm on non-woven sheet

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: KAUST


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Nonomuraea glycinis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Biomin Research Center


ncbi_country: Brazil: Vicosa

ncbi_isolation_source: dairy goats with persistent mastitis after therapy with enrofloxacin

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: UFMG


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Uppsala University


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas sp. S1731

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: UC Davis Medical Center; Davis; Ca

ncbi_organism_name: Escherichia coli

ncbi_submitter: UC Davis


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ghana

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_organism_name: Vibrio sp. 1733

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: MD

ncbi_organism_name: Rhodanobacter sp. FDAARGOS 1247

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: IL

ncbi_isolation_source: small intestine

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Veinous catheter

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: IFSC USP


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: Rumen uncultured genome RUG11344

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1037

ncbi_submitter: Broad Institute


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonas sp. LAIL14HWK12:I1

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: North Caucasus region

ncbi_organism_name: Neorhizobium galegae

ncbi_submitter: ARRIAM


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_country: USA: Calhoun; Tennessee

ncbi_organism_name: Sphingobium sp. B11D3A


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malawi

ncbi_isolation_source: blood

ncbi_submitter: 10k Salmonella genomes project

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: India: Khirganga hotspring; Himachal Pradesh; Northern Hiamayas

ncbi_isolation_source: microbial mat

ncbi_organism_name: Desulfarculus sp.

ncbi_submitter: University of Delhi


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Cote d Ivoire: Thai National Park

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus infantis

ncbi_submitter: University of Kaiserslautern


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Queensland


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: Belgium

ncbi_submitter: Sciensano


ncbi_country: Malaysia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bifidobacterium mongoliense

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Carleton Univeristy


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces atroolivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Australia: Newcastle

ncbi_organism_name: Gemmiger formicilis


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Microbulbifer sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: TX

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Saudi Arabia: Jizan

ncbi_isolation_source: soil

ncbi_organism_name: Brucella intermedia

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Bacteroidetes bacterium UBA987

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA987


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: human

ncbi_submitter: University clinic Muenster


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: agriculture university of HeBei


ncbi_isolation_source: porpoise

ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: India: Lucknow; UP

ncbi_isolation_source: Hexachlorocyclohexane (HCH) pesticide-contaminated soil

ncbi_organism_name: Paracoccus sp. AK26

ncbi_submitter: University of Delhi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. AK26


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-02570

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-02570


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_organism_name: Gulosibacter bifidus

ncbi_strain_identifiers: TISTR 1511

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Smithella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Microcoleaceae cyanobacterium


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_organism_name: Oceanicoccus sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Bartonella sp. LB28NMGDW

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Shewanella indica

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Ministry of Primary Industries


ncbi_organism_name: Marisediminitalea sp.

ncbi_submitter: Xiamen University


gtdb_type_species_of_genus: t

ncbi_organism_name: Aliamphritea ceti

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterobacter sp. 37

ncbi_submitter: Zhejiang university


ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_isolation_source: lactic starter (for yogurt making)

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Ruthenibacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chungnam national university


ncbi_assembly_name: Rumen uncultured genome RUG042

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-4440

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_isolation_source: NHS Scotland

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_country: China: Guangdong

ncbi_isolation_source: forest soil

ncbi_organism_name: Collimonas humicola

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_organism_name: Leuconostoc citreum LBAE C11

ncbi_strain_identifiers: LBAE C11

ncbi_submitter: LISBP

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;s__Leuconostoc citreum;x__Leuconostoc citreum LBAE C11


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef macroalgae biofilm

ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: James Cook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_organism_name: Veillonella atypica

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_assembly_name: IMG-taxon 2700988697 annotated assembly

ncbi_organism_name: Shimia gijangensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: gut content

ncbi_organism_name: Alistipes muris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus malodoratus

ncbi_submitter: BGI-Shenzhen


ncbi_country: Poland

ncbi_isolation_source: leaf spots

ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_country: USA: FL; Dry Tortugas

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Ruegeria sp. Ofav3-42

ncbi_submitter: Meyer Microbes Lab


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_assembly_name: freshwater MAG --- MJ130702B_bin-029

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CHU Montpellier


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Faeces


ncbi_country: Portugal

ncbi_isolation_source: Mussels

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: uncultured Cryptobacterium sp.


ncbi_country: USA: WA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia sp. MOD1-EC6021

ncbi_submitter: FDA/CFSAN


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: mBioClim


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Canada

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Chitinophagales bacterium


ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Instituto de Biotecnologia


ncbi_organism_name: Arcobacter sp.

ncbi_submitter: University of Waterloo


ncbi_country: China: Zhangzhou

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Lederbergia citrea

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_country: USA: Georgia

ncbi_isolation_source: Lake Lanier

ncbi_organism_name: Actinobacteria bacterium UBA2236

ncbi_submitter: University of Queensland


ncbi_organism_name: Hallerella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Genetics and Animal Breeding, Chattogram Veterinary and Animal Sciences University


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: EPI HHMI


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: urine

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: wound scalp

ncbi_organism_name: Bacteroides sp. HMSC067B03

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Enterobacter mori

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Dokdonia sp. Asnod2-E02

ncbi_submitter: Station Biologique de Roscoff


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Qingdao Agricultural University


ncbi_assembly_name: freshwater MAG --- Umea_bin-02178

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Roseateles sp. UC29_93

ncbi_submitter: The Connecticut Agricultural Experiment Station


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Monash University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Blautia hansenii

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Clostridium sediminicola

ncbi_submitter: Tokyo University of Marine Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad Cientifica del Sur


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Tengchong; Yunnan; QiaoQuan

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Arenibacter palladensis

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG10030

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0305260.2

ncbi_submitter: IGS


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Neptuniibacter halophilus

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas sp. MF6747

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: CDC Prevention Epicenter Program


ncbi_organism_name: Prevotella sp. RM4

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: Plant stem

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: University of Agriculture Faisalabad


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-177

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Thauera sp.

ncbi_strain_identifiers: new MAG-177

ncbi_submitter: Micoorganism


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Butyricicoccus sp. AM42-5AC

ncbi_submitter: BGI


ncbi_country: Thailand: Phitsanulok

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cardiff University


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: Streptomyces sp. NPDC007162

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: CHUV-UNIL


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Mycolicibacterium sp. lyk4-40-TYG-92

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Cereibacter sphaeroides

ncbi_submitter: Inner Mongolia University of Technology


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Alachua

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Three points; AZ

ncbi_isolation_source: soil

ncbi_organism_name: Lysinibacillus boronitolerans

ncbi_submitter: NCAUR-ARS-USDA


ncbi_country: Australia

ncbi_isolation_source: Casey Hospital

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Peking University Third Hospital


ncbi_country: Japan

ncbi_organism_name: Pseudomonas syringae pv. daphniphylli

ncbi_strain_identifiers: CFBP 4219

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. daphniphylli


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA

ncbi_isolation_source: mixture of 5 samples p4; p32; p49; p64; p79 isolated from the parent mutator strain Pseudomonas fluorescens ATCC 948

ncbi_organism_name: Pseudomonas fluorescens

ncbi_strain_identifiers: ATCC 948

ncbi_submitter: Indiana University


ncbi_isolation_source: mouse gut

ncbi_organism_name: Escherichia coli O16:H48

ncbi_submitter: National Microbiology Laboratory at Guelph


ncbi_country: Germany: Tuebingen

ncbi_isolation_source: leaf

ncbi_organism_name: Sphingomonas faeni

ncbi_submitter: University of Tuebingen


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Hohhot

ncbi_isolation_source: Sour horse milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: university


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Malaysia: Sibu

ncbi_isolation_source: Foot Swap

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Leclercia pneumoniae

ncbi_submitter: USDA-ARS


ncbi_country: Cameroon

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: Emerging Pathogens Institute, University of Florida,


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: USA: Milwaukee; Wisconsin

ncbi_isolation_source: beach water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin-Milwaukee


ncbi_submitter: Jinan Military General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio alginolyticus;x__Vibrio alginolyticus NBRC 15630 = ATCC 17749


ncbi_isolation_source: caecum

ncbi_organism_name: Barnesiella sp. An22

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: oil-polluted soil

ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_strain_identifiers: IEGM 1363

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_country: Venezuela

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0298942.8

ncbi_submitter: IGS


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Marques de Valdecilla


ncbi_country: Canada

ncbi_isolation_source: meat and bone meal

ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. AF11-11

ncbi_submitter: BGI


ncbi_organism_name: Cereibacter sphaeroides

ncbi_submitter: Inner Mongolia University of Technology


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Clostridium tertium


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_submitter: Copenhagen University Hospital Hvidovre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Indonesia

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: Australia: Newcastle

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Queensland


ncbi_country: China: Beijing

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: China CDC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Powell Lake South basin; British Columbia

ncbi_isolation_source: lake water

ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Dalhousie University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Yersinia pestis 12

ncbi_submitter: Beijing Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 12


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Mycoplasmataceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Duncaniella muris


ncbi_country: Japan:Tokyo; Shinju-ku

ncbi_isolation_source: human skin

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Hiroshima University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis;x__Yersinia pestis subsp. pestis bv. Medievalis


ncbi_organism_name: Glaesserella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Argentina

ncbi_organism_name: Staphylococcus aureus DAR5866

ncbi_submitter: Broad Institute


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Alsobacter metallidurans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: United Kingdom:England

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: ROSLIN


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: annelid root tissue scrapped from turkey femur surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Kiritimatiellales bacterium

ncbi_submitter: ProBone


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 23462;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Canada: Lacombe

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Qingdao Agricultural University


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: bacterium

ncbi_submitter: Northeastern University


ncbi_country: USA: Oklahoma

ncbi_isolation_source: retail chicken gizzard

ncbi_submitter: The University of Tulsa


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus sp. HMSC62A08

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_submitter: Zhejiang University


ncbi_country: Namibia: Etosha

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Norwegian Defence Research Establishment


ncbi_country: Italy

ncbi_organism_name: Candidatus Nardonella dryophthoridicola

ncbi_strain_identifiers: NardRF

ncbi_submitter: Ca' Foscari University of Venice

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Candidatus Nardonella;s__Candidatus Nardonella dryophthoridicola


ncbi_country: China: Guangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: SouthChina Agriculture University


ncbi_country: USA: IL

ncbi_isolation_source: environment

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Nanjing

ncbi_isolation_source: clinically healthy pig

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Caecum


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas fragariae (ex Marin et al. 2024)


ncbi_assembly_name: Escherichia coli ST405 strain KCRI-393

ncbi_isolation_source: diarrhoeal stool

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Korea

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University College of medicine


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Fudan University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Caldilinea sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Bangladesh

ncbi_isolation_source: Pus

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EMG


ncbi_strain_identifiers: LT2 KO STM1252

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Zhaoqing

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sphingomonas paucimobilis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium GW2011_GWC1_33_28


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_submitter: The University of Queensland


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Beihang University


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W29625

ncbi_submitter: Broad Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis


ncbi_organism_name: Agrobacterium vitis

ncbi_strain_identifiers: KFB 239

ncbi_submitter: Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), EP


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides acidifaciens

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Erysipelotrichales bacterium


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Newcastle

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_country: Malaysia: Johor

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Deakin University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: EMG


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: University of Gothenburg


ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_country: USA

ncbi_isolation_source: blood from hospitalized preterm neonate

ncbi_organism_name: Serratia nevei

ncbi_submitter: Washington University in St. Louis


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Germany

ncbi_isolation_source: brewery environment

ncbi_organism_name: Loigolactobacillus backii

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Italy

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 56824-21

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Spongiibacter sp.


ncbi_country: United Kingdom: Reading

ncbi_isolation_source: Pre-filter water works

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: SC


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S11

ncbi_organism_name: Acetatifactor muris

ncbi_submitter: University of Calgary


ncbi_country: China: Linyi

ncbi_isolation_source: Root endophyte

ncbi_organism_name: Micrococcus sp. GbtcB5

ncbi_submitter: Central South University


ncbi_country: Pakistan: Isb

ncbi_isolation_source: probiotic supplement

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: NIBGE


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TRS20

ncbi_submitter: Vanderbilt University


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Imported/domestic retail Oyster

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Estonia: Tartu

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Leptospira terpstrae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Vescimonas sp.


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDX8P107P-1

ncbi_submitter: South China Agricultural University


ncbi_country: Brazil:Santa Catarina; Brusque

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: hospital wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Hong Kong

ncbi_organism_name: Staphylococcus aureus R0545

ncbi_submitter: Broad Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.


ncbi_isolation_source: burned soil

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: slaughterhouse

ncbi_submitter: University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_assembly_name: freshwater MAG --- Loclat_bin-08919

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Xisha

ncbi_isolation_source: marine sponge

ncbi_organism_name: Streptomyces reniochalinae

ncbi_submitter: Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University


ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_strain_identifiers: R579;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Uliginosibacterium paludis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Australia: Perth

ncbi_isolation_source: water

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Curtin University


ncbi_country: France

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Caulobacter sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: United Kingdom: Great Yarmouth

ncbi_isolation_source: surface coastal seawater

ncbi_organism_name: Halobacteriovorax sp.

ncbi_submitter: Ocean university of China


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: South Korea: Namwon

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Aquihabitans sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1213

ncbi_submitter: Broad Institute


ncbi_isolation_source: periphery of the Zn-Pb mine of Les Avinieres

ncbi_organism_name: Mesorhizobium delmotii

ncbi_strain_identifiers: STM 462

ncbi_submitter: Montpellier SupAgro/ INRA/IRD/CIRAD/UM


ncbi_organism_name: Candidatus Bipolaricaulaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;x__unclassified Candidatus Bipolaricaulaceae;s__Candidatus Bipolaricaulaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium GW2011_GWF1_46_12


ncbi_assembly_name: Salmonella enterica CVM N31384-SQ v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: coral

ncbi_organism_name: Ruegeria sp. R14_0

ncbi_submitter: University of Konstanz


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0111R


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Beside Boulder

ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: University of Duisburg-Essen


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas at San Antonio


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Propionibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: Duke University


ncbi_organism_name: Speluncibacter jeojiensis

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: burned soil

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Veillonella sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_isolation_source: marine sediment

ncbi_organism_name: Idiomarina sp. FeN1

ncbi_submitter: Caltech


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Shewanella sp. 38A_GOM-205m

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan: Osaka

ncbi_isolation_source: river water

ncbi_organism_name: Aeromonas media

ncbi_submitter: Osaka Ohtani University


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: EMG


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_organism_name: Rhizobium beringeri

ncbi_submitter: ARRIAM


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridiales Family XVII. bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;x__unclassified Clostridiales Family XVII. Incertae Sedis;s__Clostridiales Family XVII. bacterium


ncbi_isolation_source: foregut

ncbi_organism_name: Candidatus Epulonipiscium fishelsonii

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Clostridium baratii

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Labbmm Biomol Group


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Germany

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Staphylococcus sp. HMSC063F02

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: India

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russia Research Anti-Plague Institute "Microbe"


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Iraq


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Centipeda periodontii

ncbi_submitter: EMG


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Proteobacteria bacterium UBA7420

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA7420


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin87

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: KAP bin87

ncbi_submitter: Monash University


ncbi_organism_name: Pseudomonas sp. NPDC087814

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidovorax sacchari

ncbi_submitter: Genetic Resources Center, National Agriculture and Food Research Organization


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. NW1214

ncbi_submitter: Sichuan University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Galway


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter sp. L710-1

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bifidobacterium aquikefiri

ncbi_submitter: Teagasc


ncbi_country: China: Jiangsu

ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: marine

ncbi_organism_name: Alcanivorax sp.


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Taizhou

ncbi_isolation_source: seawater

ncbi_organism_name: Erythrobacter aurantius

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: France: Tours

ncbi_isolation_source: vaginal sample

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INRA


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Uttar Pradesh

ncbi_organism_name: Brucella abortus 544

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Haifa University- The Leon H. Charney School of Marine Sciences


ncbi_organism_name: Clostridium perfringens CPE str. F4969

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium perfringens;x__Clostridium perfringens CPE;x__Clostridium perfringens CPE str. F4969


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: conjunctiva

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_organism_name: Paraburkholderia bannensis NBRC 103871

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Spain: Mar Menor (Region de Murcia)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad de Alicante


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: Environment

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Parabacteroides sp. 20_3

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroides finegoldii


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_submitter: University of Oslo


ncbi_organism_name: Avibacterium endocarditidis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_isolation_source: Wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: SAHMRI


ncbi_country: France: Normandy

ncbi_isolation_source: genital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: LABEO


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Nocardia vaccinii NBRC 15922

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Nocardia;s__Nocardia vaccinii;x__Nocardia vaccinii NBRC 15922


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: blood

ncbi_submitter: AIT Austrian Institute of Technology


ncbi_country: Spain: Asturias

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Canada: Alberta

ncbi_isolation_source: Culture Media

ncbi_submitter: University of Alberta


ncbi_country: China: Shanghai

ncbi_submitter: Huashan hospital


ncbi_isolation_source: commercial dairy product

ncbi_submitter: Danone Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei;sb__Lacticaseibacillus paracasei subsp. tolerans;x__Lacticaseibacillus paracasei subsp. tolerans Lpl7


ncbi_organism_name: uncultured Schleiferiaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Lactobacillus apis

ncbi_submitter: EMG


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China agricultural university


ncbi_country: USA

ncbi_organism_name: Pseudomonas chlororaphis subsp. piscium

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. piscium


ncbi_country: Gambia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Peru

ncbi_isolation_source: String method

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institue


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_country: China: Xinjiang

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Micrococcaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: NHS Lothian


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: urine

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: USA: Dryden

ncbi_isolation_source: forest soil

ncbi_organism_name: Ralstonia sp. 3N

ncbi_submitter: Cornell University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: LokiAmp MDA-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Maribacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Clearwater; Florida

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WAC08452

ncbi_submitter: McMaster University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: Belgium: Ghent

ncbi_isolation_source: top soil

ncbi_organism_name: Burkholderia sp. R-70006

ncbi_submitter: LM-UGent


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces bikiniensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Metamycoplasmataceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Henan University of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Clostridiales bacterium Firm_06


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Chile: Maria Elena; Atacama Desert

ncbi_isolation_source: Maria Elena Desert Soil Below Boulder

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Duisburg-Essen


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces californicus


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW301-21B01

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Henan Agricultural University


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_assembly_name: freshwater MAG --- AM_bin-2697

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Sri Lanka: Jaffna

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Human Oral Subgingival Plaque

ncbi_organism_name: [Eubacterium] brachy


ncbi_country: Kenya

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Southern California


ncbi_assembly_name: freshwater MAG --- Loclat_bin-13748

ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_isolation_source: Isolated from contaminated platelet concentrates

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Health Canada


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: EMG


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_assembly_name: IMG-taxon 2675903027 annotated assembly

ncbi_organism_name: Paenimyroides ummariense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Hawaii

ncbi_organism_name: Thalassotalea euphylliae


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: China: Gungdong

ncbi_isolation_source: seroperitoneum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Equipe PHySE - HydroSciences Montpellier


ncbi_isolation_source: sea water

ncbi_organism_name: gamma proteobacterium HTCC2207

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: South Africa

ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium sp. CBK13

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 214

ncbi_submitter: SC


ncbi_country: Australia

ncbi_isolation_source: Shiraz

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Escherichia coli IS25

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Brazil

ncbi_isolation_source: Corn

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Xiangtan

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Hunan Agricultural University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Russia: Yakutia

ncbi_isolation_source: deep soil layers

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: State Research Center for Applied Microbiology and Biotechnology


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: uncultured Polaribacter sp.


ncbi_country: Chile: Los Lagos; Cahuelmo Hot Spring

ncbi_isolation_source: non-acidic hot spring microbial mat

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_country: China: Yantai

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Chloroherpetonaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Pseudomonas aeruginosa 3573

ncbi_submitter: Broad Institute


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: Desulfurellaceae bacterium bin18

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_country: Russia

ncbi_isolation_source: air in a school dining room

ncbi_organism_name: Intrasporangium calvum DSM 43043

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: glacial sediment

ncbi_organism_name: Pseudarthrobacter sp. PH31-O2

ncbi_submitter: Yildiz Technical University