ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: Brazil:Rio Grande do Sul

ncbi_genome_representation: full

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_assembly_level: Scaffold

ncbi_organism_name: Aureliella sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: raw milk for cow(Bos taurus)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Meiji Co., Ltd


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Brazil: Recife

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: environment

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: CRC RESIST


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: Rutgers University


ncbi_country: China: Zhejiang

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: eutrophic lake

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_submitter: JMI Laboratories

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France

ncbi_isolation_source: flower

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: INRAE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Deltaproteobacteria bacterium UBA1014

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA1014


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Hamburg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_country: Austria

ncbi_isolation_source: trachea

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: Cleaned poultry house

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_organism_name: Leptolyngbyaceae cyanobacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: China

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: China Agricultural University


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Australia: Clermont; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Tannerellaceae bacterium


ncbi_organism_name: bacterium UBP8_UBA6595

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP8_UBA6595


ncbi_country: United Kingdom

ncbi_isolation_source: Human


ncbi_submitter: Christian Medical College


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_country: USA: Williamsport

ncbi_isolation_source: Freshwater Creek

ncbi_organism_name: Flavobacterium sp. MR2016-29

ncbi_submitter: Lycoming College


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Brucella intermedia


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus cereus group sp. BceL045

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL045


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Salmonella sp. NW1245

ncbi_submitter: Sichuan University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Corynebacterium variabile

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Iowa State University


ncbi_organism_name: Ectopseudomonas mendocina

ncbi_submitter: Fujian Academy of Agricultural SciencesSouth China Agricultural University


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Nocardiopsis dassonvillei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Washington University in Saint Louis


ncbi_genome_category: derived from single cell

ncbi_organism_name: Escherichia coli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Kyungpook National University


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: Colon biopsy

ncbi_submitter: Universidad de Chile


ncbi_country: USA: Florida

ncbi_organism_name: Xanthomonas euvesicatoria pv. citrumelonis

ncbi_submitter: UNESP-FCAV


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: sewage

ncbi_organism_name: Aureimonas fodinaquatilis

ncbi_refseq_category: reference genome

ncbi_submitter: Chung-Ang University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolate: AOP30_D2_surf _bin _15

ncbi_organism_name: Leucobacter sp.

ncbi_strain_identifiers: AOP30_D2_surf _bin _15

ncbi_submitter: Genoscope


ncbi_assembly_name: Rumen uncultured genome RUG13680

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Shaanxi

ncbi_isolation_source: chicken cloacal swab

ncbi_submitter: China Agricultural University


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: seawater

ncbi_organism_name: Alteromonas sp. ZYF713

ncbi_submitter: Ocean University of China


ncbi_submitter: INSTITUT PASTEUR


ncbi_submitter: University of Edinburgh


ncbi_country: Argentina

ncbi_isolation_source: liver meal

ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: USA: San Joaquin County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_country: China: Shenzhen; Guangdong

ncbi_organism_name: Bradyrhizobium manausense

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: metagenome

ncbi_organism_name: Rhodopseudomonas palustris

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: fecal material

ncbi_organism_name: Acinetobacter sp. B51(2017)

ncbi_submitter: NSU Genome Research Institute (NGRI), North South University


ncbi_organism_name: Parashewanella sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Tehcnology, Sydney


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Rhodococcus sp.


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_organism_name: Bacillus sp. NPDC094106

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. NPDC094106


ncbi_organism_name: uncultured Microthrixaceae bacterium


ncbi_country: Denmark

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C343_08

ncbi_submitter: IGS


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Anaerotruncus colihominis

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Turkey

ncbi_isolation_source: cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Thermomonas sp.


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Oribacterium sp.


ncbi_country: Taiwan

ncbi_isolation_source: pond

ncbi_organism_name: Williamsia sp. CHRR-6

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_country: Brazil

ncbi_isolation_source: Poultry

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Maribacter sp. BPC-D8

ncbi_submitter: Friedrich Schiller University Jena


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Missouri

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM 21539


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Microcoleus sp. B4b_D2

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_assembly_level: Chromosome

ncbi_country: South Africa

ncbi_isolation_source: Emalahleni

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Pretoria


ncbi_isolation_source: soil

ncbi_organism_name: Mycolicibacterium rhodesiae JS60

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Sphingomonas sp. UMB7805-LC452B

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: Houston; TX

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Baylor College of Medicine


ncbi_country: Mexico: Mexico city

ncbi_submitter: Instituto Mexicano del Seguro Social CMN SigloXXI


ncbi_country: Germany: Lake Feldsee; Schwarzwald

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Polynucleobacter campilacus

ncbi_submitter: University of Innsbruck


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Syntrophobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: India: Gulf of Kutch

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: packaged pickles

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;s__Candidatus Staskawiczbacteria bacterium RIFOXYC1_FULL_37_43


ncbi_organism_name: Castellaniella ginsengisoli

ncbi_submitter: The University of Georgia


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Campylobacter 9 barcode

ncbi_country: United Kingdom

ncbi_isolation_source: porcine small intestine

ncbi_organism_name: Campylobacter mucosalis

ncbi_submitter: National Center for Biotechnology


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: Kenya

ncbi_organism_name: Lachnoclostridium sp. UBA6475

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Nagpur

ncbi_isolation_source: sludge from phenol fed wastewater aerobic bioreactor

ncbi_organism_name: Chitinophaga sp.

ncbi_submitter: CSIR-National Environmental Engineering Research Institute


ncbi_country: Belgium

ncbi_isolation_source: sourdough

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: VRIJE UNIVERSITEIT BRUSSEL


ncbi_organism_name: Rickettsia rickettsii str. Brazil

ncbi_strain_identifiers: Brazil

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia rickettsii;x__Rickettsia rickettsii str. Brazil


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Opitutia bacterium UBA7356

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA7356


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: metabat2_XCR1_HOM_7852_bwa.52 MAG

ncbi_organism_name: uncultured Romboutsia sp.

ncbi_strain_identifiers: metabat2_XCR1_HOM_7852_bwa.52 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: Small intestine

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- C-5_bin-261

ncbi_isolation_source: pond

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC057307

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: lake water

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Pseudoalteromonas sp.

ncbi_submitter: Academia Sinica


ncbi_organism_name: Candidatus Caldatribacterium sp.

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;c__Atribacteria;o__Atribacterales;f__Candidatus Caldatribacteriaceae;g__Candidatus Caldatribacterium;x__unclassified Candidatus Caldatribacterium;s__Candidatus Caldatribacterium sp.


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: USA: AZ; Apache Junction

ncbi_isolation_source: Biological soil crust

ncbi_organism_name: Chitinophagaceae bacterium LGM1

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Brachybacterium sp. J153

ncbi_submitter: Shanxi Medical University


ncbi_country: Pakistan

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Quaid-i-Azam University


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_country: USA: OR

ncbi_organism_name: Rhodococcus sp. 05-2256-B4

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 05-2256-B4


ncbi_organism_name: Klebsiella sp. 102738

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_assembly_name: Rumen uncultured genome RUG13594

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Rumen uncultured genome RUG11162


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: New Hampshire

ncbi_isolation_source: ascending colon brush

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of New Hampshire


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: USA: University of Nebraska-Lincoln

ncbi_isolation_source: whole bodies

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Nebraska-Lincoln


ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: South Korea:Sunchang

ncbi_isolation_source: soil

ncbi_organism_name: Rossellomorea marisflavi

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chungnam national university


ncbi_country: USA: Alabama

ncbi_organism_name: Flavobacterium nitrogenifigens

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: South Korea: Seoul

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Myxococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces xanthophaeus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Israel

ncbi_isolation_source: rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: tel-aviv sourasky medical center


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: freshwater MAG --- Loc090907-5m_bin-206

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M79256

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 604

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: China National Research Institute of Food and Fermentation Industries


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: biochar-amended oxisol soil plot 3

ncbi_organism_name: Mycobacteriaceae bacterium

ncbi_submitter: Arizona State University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Actinotignum timonense

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: throat swab

ncbi_submitter: Institute of Antibiotics


ncbi_organism_name: Salmonella sp. SWZD-2022001SAL

ncbi_submitter: Wanzhou CDC


ncbi_country: New Zealand

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_country: USA: Iowa

ncbi_organism_name: Streptomyces sp. NRRL S-474

ncbi_strain_identifiers: NRRL S-474

ncbi_submitter: University of Illinois


ncbi_country: Costa Rica

ncbi_isolation_source: human feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: INCIENSA


ncbi_submitter: SponGES


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Calditrichaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Candidatus Sysuimicrobium tengchongense

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium tengchongense

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium tengchongense


ncbi_submitter: Wuhan University


ncbi_organism_name: Bacillus sp. FSL M8-0256

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL M8-0256


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: Intraabdominal infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Poland

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_organism_name: Paenibacillus lactis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_isolate: Cupriavidus taiwanensis STM 6041

ncbi_organism_name: Cupriavidus taiwanensis

ncbi_strain_identifiers: Cupriavidus taiwanensis STM 6041

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: human stool

ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Undibacterium sp. GrIS 1.8

ncbi_strain_identifiers: GrIS 1.8

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: urine

ncbi_submitter: Lebanese American University (LAU), Byblos campus


ncbi_country: USA: PA

ncbi_isolation_source: avian lung (Gallus gallus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Ohio

ncbi_isolation_source: miscellaneous body fluid

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: MN

ncbi_isolation_source: Unsweetened Puffed Rice Cereal

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 460004 2-1


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Boston College


ncbi_organism_name: Mycolicibacterium peregrinum

ncbi_submitter: Ondokuz Mayis University, Faculty of Veterinary Medicine


ncbi_organism_name: Salmonella sp. NW706

ncbi_submitter: Sichuan University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Central Florida


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Research Center of Biotechnology


ncbi_assembly_name: freshwater MAG --- Umea_bin-03200

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Streptomyces sp. NPDC005808

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: EPFL


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_country: Turkey: Bolu

ncbi_isolation_source: lake sediment

ncbi_organism_name: Streptomyces boluensis

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Rhodococcus wratislaviensis NBRC 100605

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_strain_identifiers: ATCC BAA-614

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium simiae complex;s__Mycobacterium parascrofulaceum;x__Mycobacterium parascrofulaceum ATCC BAA-614


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Maribacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_strain_identifiers: Transconjugant cSS389

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Deinococcus knuensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Newcastle

ncbi_organism_name: Agathobacter sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Collinsella tanakaei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Korea: Bukhan Mountain

ncbi_isolation_source: fresh water

ncbi_organism_name: Flavobacterium seoulense

ncbi_submitter: ChunLab, Inc


ncbi_country: Brazil: Campinas; SP

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: State University of Campinas


ncbi_organism_name: Streptomyces sp. NPDC056191

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Borrelia hermsii

ncbi_submitter: Laval university


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: INRA


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_isolation_source: burned soil

ncbi_organism_name: Caulobacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptomyces sparsogenes


ncbi_organism_name: Janthinobacterium sp. K2E3

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_assembly_name: S.Tm LT2p22_assembled

ncbi_isolate: S.Tm LT2p22_assembled

ncbi_strain_identifiers: S.Tm LT2p22_assembled

ncbi_submitter: ETH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: National Centre of Microbiology


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Jeonbuk National University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Egypt

ncbi_isolation_source: nodules of Casuarina cunninghamia

ncbi_organism_name: Frankia sp. CcI6

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Pseudomonadota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Idiomarina sp. UBA5185

ncbi_submitter: University of Queensland


ncbi_organism_name: Christensenellales bacterium


ncbi_country: Spain: Asturias

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudaeromonas paramecii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Paenibacillus sp. 7884-2

ncbi_submitter: Bielefeld University


ncbi_isolate: Psychrobacter immobilis NCIMB361

ncbi_isolation_source: intestine of Lethrinus nebulosus

ncbi_organism_name: Psychrobacter immobilis

ncbi_strain_identifiers: Psychrobacter immobilis NCIMB361

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: Japan

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter suis

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-0525

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Thermus tengchongensis YIM 77401

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Deinococcota;c__Deinococci;o__Thermales;f__Thermaceae;g__Thermus;s__Thermus tengchongensis;x__Thermus tengchongensis YIM 77401


ncbi_assembly_name: Salmonella enterica CVM N51283 v1.0

ncbi_country: USA: MO

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: FDA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Yersinia intermedia


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Southern Denmark


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: BiOSSE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Paris Saclay University


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Kitasatospora sp. NPDC091257

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Throat swab 6

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_country: China: Guangxi Province

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: GUANGXI ACADEMY OF FISHERY SCIENCES


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Enterococcus durans

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pelobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NBC_00498

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Parafrankia discariae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU1 evolved under selective conditions; LB evolved gen 500 Population GS

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: RU1 LB12

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus SJOS6072

ncbi_submitter: Broad Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: University of Chicago


ncbi_country: Romania: Bucharest

ncbi_isolation_source: clinical

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: China: Huzhou

ncbi_isolation_source: stool

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA:Durham; North Carolina

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Duke University


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: France

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Paris-Sud


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Seattle; WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_submitter: Southwest Medical University


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: PUS

ncbi_submitter: Makerere University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: Turkmenistan: Askabat

ncbi_isolation_source: Desert soil

ncbi_organism_name: Streptomyces sp. 8K308

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Propionicimonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural Univercity


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Bacillus cereus group sp. BceL004

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL004


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Fodinicurvata halophila

ncbi_strain_identifiers: CECT 8472

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: Scottish Marine Association for Marine Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC056785


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Utrecht University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Stanford University


ncbi_isolate: Urine

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: NILS52:D;STp 963;O2:H18;STw 963;Urine

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: BGI


ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Salmonella sp. CQ24WZ0244SAL

ncbi_submitter: Wanzhou CDC


ncbi_assembly_name: Rumen uncultured genome RUG723

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Baltimore; MD

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: IGS


ncbi_country: Australia

ncbi_isolation_source: Carriage sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sydney


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater

ncbi_organism_name: Fusobacteriota bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Bartonellaceae;g__Bartonella;s__Bartonella vinsonii;sb__Bartonella vinsonii subsp. berkhoffii;x__Bartonella vinsonii subsp. berkhoffii ATCC 51672


ncbi_country: Japan:Yamaguchi; Ube; Yamaguchi University Hospital

ncbi_organism_name: Helicobacter pylori


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: KEMRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Mediterranean Sea

ncbi_isolation_source: Fish farm

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: Caecum


ncbi_organism_name: uncultured Dorea sp.


ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EBI


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0290R

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-3675

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Small intestine


ncbi_assembly_name: freshwater MAG --- Loc090519-4m_bin-561

ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Wisconsin

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


gtdb_type_species_of_genus: t

ncbi_organism_name: Megasphaera elsdenii DSM 20460

ncbi_submitter: University of Natural Resources and Life Sciences


ncbi_country: Turkey: Kayseri

ncbi_isolation_source: cheese

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Veterinary Faculty of Erciyes University


ncbi_country: USA: Lake Erie

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of Michigan


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Flavimobilis marinus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Canada: Nova Scotia

ncbi_isolation_source: water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- Loc090721-8-6m_bin-0446


ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: EMG


ncbi_organism_name: Massilia sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Harbin Institute of Technology at Weihai


ncbi_isolation_source: terrestrial

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Bangladesh: Mathbaria

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: Canada: Quebec

ncbi_isolation_source: Skin mucus

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Plate-forme d'Analyses Genomiques de l'Universite Laval


ncbi_country: USA: Minnesota

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus sp. UMNPBX5

ncbi_submitter: University of Minnesota


ncbi_organism_name: Escherichia coli

ncbi_submitter: ICMR-National Institute of Occupational Health


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Staphylococcus sp. 30401_3112M30942

ncbi_submitter: University of Bath


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Brevibacillus fulvus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: desert soil

ncbi_organism_name: Nonomuraea aridisoli

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 126

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Finland

ncbi_isolation_source: Human

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Italy: Venice Lagoon

ncbi_isolation_source: marine sediment

ncbi_organism_name: Eudoraea adriatica

ncbi_submitter: National Institute of Oceanography and Applied Geophysics - OGS


ncbi_country: Colombia: Bogota

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: China

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: South Korea:Changwon

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: USA

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_isolation_source: surface swab

ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_assembly_name: IMG-taxon 2700988700 annotated assembly

ncbi_organism_name: Chitinophaga jiangningensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Mucosal surface Ascending Colon

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: UNC-Chapel Hill


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Cepheid


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo AC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: EMG


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Paraburkholderia strydomiana

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_isolation_source: human gut

ncbi_organism_name: Lagierella massiliensis


ncbi_organism_name: Acidaminococcus intestini RyC-MR95

ncbi_submitter: Ramon y Cajal University Hospital  of Madrid, Valencia University and Public Health Research Superior Center (CSISP) of Valencia's Goverment, Spain


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: University of Lausanne


ncbi_organism_name: Lacticaseibacillus styriensis

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_organism_name: uncultured Chloroflexia bacterium


ncbi_organism_name: Kineococcus sp. SYSU DK025

ncbi_strain_identifiers: SYSU DK025

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptococcus iners subsp. hyiners

ncbi_submitter: National Animal Disease Center/ ARS/ USDA


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Microbacterium enclense

ncbi_submitter: BGI Research


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: icddr,b


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Kitasatospora sp. NPDC004745

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Syncrude; Ft. McMurray; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: bacterium UBP2_UBA5599

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP2_UBA5599


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: MER 118

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Austria: Carinthia

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Leucobacter aridicollis

ncbi_strain_identifiers: BZR 206

ncbi_submitter: Institute Cytology and Genetics SB RAS


ncbi_isolation_source: unknown

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: UNIVERSITY OF JENA


ncbi_country: United Kingdom

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Spain

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Slovakia: Samorin

ncbi_isolation_source: mixer for raw meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Haemophilus sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Barcelona


ncbi_country: USA: Nebraska

ncbi_organism_name: Stenotrophomonas sp. 232

ncbi_submitter: University of Nebraska Medical Center


ncbi_country: Canada: Lacombe

ncbi_organism_name: Porcincola intestinalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia: Penang

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Institute for Medical Research


ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_country: Croatia: Osijek

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_isolation_source: Little Long Lake

ncbi_organism_name: alpha proteobacterium L41A

ncbi_submitter: University of Notre Dame


ncbi_organism_name: Micromonospora sp. CPCC 205539

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_country: China: Heyuan City; Guangdong Province

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: EMG


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: University of Aberdeen


ncbi_country: Spain: Ribadeo; Galicia

ncbi_isolation_source: larvae in seawater tank

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_country: Croatia: Split

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: Northern Arizona University


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Lilbub from private home

ncbi_organism_name: Intestinimonas sp.

ncbi_submitter: AnimalBiome


ncbi_organism_name: Thermovirgaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China

ncbi_isolation_source: bile

ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: skin ulcer

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KPH

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mesoflavibacter sp.

ncbi_submitter: University of Bristol


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Bdellovibrionaceae bacterium UBA3471

ncbi_submitter: University of Queensland


ncbi_organism_name: Rhodococcus sp. KRD197

ncbi_submitter: Strathclyde University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. KRD197


ncbi_organism_name: Nitrincola sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Brumimicrobium sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sutterella sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Thailand: Chanthaburi

ncbi_isolation_source: Hepatopancreas of EMS shrimp

ncbi_organism_name: Shewanella khirikhana

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Rikenellaceae bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Emergencia sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: University College Cork


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Brenneribacteriota;s__Candidatus Brennerbacteria bacterium CG_4_10_14_0_2_um_filter_43_14


ncbi_country: New Zealand: Leeston

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CMB73_AMP L3:3

ncbi_submitter: University of Canterbury


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: EMG


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_assembly_name: IMG-taxon 2599185356 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFPP14

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: United Kingdom: England; North Warwickshire

ncbi_isolation_source: Coal spoil at the Kingsbury Mine

ncbi_organism_name: Acidithiobacillus caldus

ncbi_strain_identifiers: KU

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_country: Ethiopia: Amhara; North Gondar

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_11


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_submitter: Washington University in St. Louis


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Pelethomonas sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Pelethomonas;x__unclassified Candidatus Pelethomonas;s__Candidatus Pelethomonas sp.


ncbi_country: China: Sichuan

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Odoribacter sp. OF09-27XD

ncbi_submitter: BGI


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Mesotoga prima

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: Iran

ncbi_organism_name: Mycobacterium tuberculosis NRITLD44

ncbi_submitter: Broad Institute


ncbi_country: Norway: Tromso

ncbi_isolation_source: subarctic landfill

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: UiT: The Arctic University of Norway


ncbi_isolation_source: lake water

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: MO

ncbi_isolation_source: turkey intestine (Meleagris gallopavo)

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. CVM24388


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Marinobacter sp.

ncbi_submitter: EMG


ncbi_country: Portugal: Lisbon area

ncbi_isolation_source: Rectum

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_organism_name: Streptomyces griseosporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Washington


ncbi_organism_name: Vibrio gigantis

ncbi_submitter: Istanbul University


ncbi_organism_name: Salinispirillum marinum

ncbi_strain_identifiers: CECT 8342

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Legionella sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptomyces sp. NPDC002387


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Slackia isoflavoniconvertens


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Alishewanella aestuarii

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Anaeromyxobacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Zhanjiang

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Actinotalea lenta

ncbi_strain_identifiers: SYSU T00b490

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Streptomyces chrestomyceticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus benefaciens

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus benefaciens


ncbi_isolation_source: burned soil

ncbi_organism_name: Paucimonas sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: metagenome

ncbi_organism_name: Weissella cibaria

ncbi_submitter: University of Queensland


ncbi_isolation_source: wound secretion

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: South Korea

ncbi_isolation_source: water

ncbi_organism_name: Janthinobacterium sp. SUN118

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis EnGen0329

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: USA: Oregon

ncbi_isolate: PpusSym

ncbi_isolation_source: Beetle Malpighian tubules

ncbi_organism_name: Enterobacteriaceae endosymbiont of Plateumaris pusilla

ncbi_strain_identifiers: PpusSym

ncbi_submitter: Johannes Gutenberg University Mainz


ncbi_country: India

ncbi_organism_name: Xanthomonas vasicola pv. arecae

ncbi_strain_identifiers: NCPPB 2649

ncbi_submitter: University of Exeter

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Fuzhou; Fujian

ncbi_organism_name: Klebsiella sp. P1927

ncbi_submitter: Institute of Environmental Microbiology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany: Eilenburg

ncbi_isolation_source: active sludge of wastewater treatment plant

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Helmholtz Center for Environmental Research -UFZ


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: New York City

ncbi_isolation_source: incision site abdomen

ncbi_organism_name: Escherichia coli

ncbi_submitter: Columbia University Medical Center


ncbi_country: USA

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Yersinia sp. 1652 StPb PI

ncbi_strain_identifiers: 1652 StPb PI

ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__unclassified Yersinia (in: enterobacteria);s__Yersinia sp. 1652 StPb PI


ncbi_country: Viet Nam: Thai Binh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: National Cancer Institute - NIH


ncbi_country: Italy: Bologna

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus kullabergensis

ncbi_submitter: NO PROBLEMS


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Hopital Bicetre


ncbi_country: Nigeria: Ring Road; Ibadan

ncbi_isolation_source: hospital wastewater

ncbi_submitter: University at Albany, State University of New York


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacteriaceae bacterium UBA3107

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Rariloculaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Rariloculales;f__Candidatus Rariloculaceae;x__unclassified Candidatus Rariloculaceae;s__Candidatus Rariloculaceae bacterium


ncbi_organism_name: Methylococcus capsulatus

ncbi_submitter: Giprobiosintez


ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_submitter: Toho University


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Holdemanella biformis

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter wuhouensis


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Dyadobacter sp.

ncbi_submitter: University of Fribourg


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: University of Chicago


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: EMG


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ruijin Hospital


ncbi_submitter: Public Health Ontario


ncbi_isolation_source: Faeces


ncbi_organism_name: Streptomyces scopuliridis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: Duncaniella muris


ncbi_organism_name: uncultured bacterium


ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Burkina Faso: Kouba; public road

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. BF9-10

ncbi_submitter: University of Bialystok

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. BF9-10


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0850

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Japan

ncbi_isolation_source: Sputum

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Streptomyces sp. S1

ncbi_submitter: BGI Research


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Sulfurovum sp. 35-42-20


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: ACRRM

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: metagenome

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: IMG-taxon 2657245704 annotated assembly

ncbi_organism_name: Streptomyces sp. ScaeMP-6W

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Friedrich-Loeffler-Institut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7)


ncbi_country: New Zealand: Manawatu

ncbi_isolation_source: Recto-anal Mucosal Swab (RAMS)

ncbi_organism_name: Escherichia coli

ncbi_submitter: mEpilab, Massey University


ncbi_country: Viet Nam

ncbi_isolation_source: stomach

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: UT Southwestern Medical Center


ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: China: Guangzhou

ncbi_submitter: SouthChina Agriculture University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1843R

ncbi_submitter: Broad Institute


ncbi_organism_name: Herbiconiux flava

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Christensenellaceae bacterium


ncbi_submitter: Tecnologico de Monterrey


ncbi_country: India

ncbi_isolation_source: Black rot infected cabbage leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Indian Agricultural Research Institute (IARI)


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-390-D18

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hospital Infantil de Mexico Federico Gomez


ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Rhodomicrobium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Pseudomonas sp. p1(2021b)

ncbi_submitter: University of Florida


ncbi_organism_name: Legionella sp. S2E2

ncbi_submitter: University of Bologna


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Arenicellales bacterium nBUS_48

ncbi_submitter: University of Washington


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Dehalococcoidia bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. NW1254

ncbi_submitter: Sichuan University


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-531

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH