ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Bergen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Escherichia coli

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_assembly_level: Contig

ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Norway

ncbi_isolation_source: hospital

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_submitter: APC Microbiome Ireland


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Cefas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


gtdb_representative: t

ncbi_country: China: Suzhou

ncbi_isolation_source: feces

ncbi_organism_name: Kineothrix sp. MSJ-39

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- MJ110802A_bin-376

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_level: Scaffold

ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Bacteroides clarus

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Beutenbergiaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Reyranellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Nepal: Himalayas; soil from near a hot spring

ncbi_isolation_source: alpine soil [ENVO:00005741]

ncbi_organism_name: Streptomyces sp. MBT98

ncbi_submitter: Institute of Biology, Leiden University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: United Kingdom

ncbi_isolation_source: cooling tower isolate

ncbi_organism_name: Legionella oakridgensis RV-2-2007

ncbi_submitter: Georg-August-University of Goettingen, Genomics and Applied Microbiology, Göttinger Genomics Laboratory


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_organism_name: Candidatus Methylomirabilis sp.

ncbi_submitter: radboud university nijmegen

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;x__unclassified Candidatus Methylomirabilis;s__Candidatus Methylomirabilis sp.


ncbi_organism_name: Anaerovoracaceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Sulfopaludibacter sp. SbA3

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Sulfopaludibacter;x__unclassified Candidatus Sulfopaludibacter;s__Candidatus Sulfopaludibacter sp. SbA3


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: Germany

ncbi_submitter: SurvCARE


ncbi_country: USA: CT

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bartonella sp. AA5SXTY

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human gut metagenome


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Alistipes sp.


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of New Brunswick


ncbi_assembly_level: Chromosome

ncbi_organism_name: Azospirillum baldaniorum

ncbi_submitter: Georgia Institute of Technology

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Bradyrhizobium sp. 956_D2_N1_5

ncbi_submitter: VIB


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli KTE13

ncbi_submitter: Broad Institute


ncbi_country: China: Huzhou

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou cdc


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S1

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Calgary


ncbi_country: Taiwan

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: Northeast Normal University


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9073

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: uncultured Ruthenibacterium sp.


ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: NHGRI/NIH


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France: Nantes

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: Aklavik; Northwest Territories

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Allokutzneria multivorans

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_assembly_name: Rumen uncultured genome RUG13110

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: urine

ncbi_submitter: SurvCARE


ncbi_country: Pakistan

ncbi_isolation_source: Not known


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: BGI-Shenzhen


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Mycoplasma sp.

ncbi_submitter: Kiel University


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Listeria ivanovii subsp. londoniensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria ivanovii;sb__Listeria ivanovii subsp. londoniensis


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Limpopo province

ncbi_organism_name: Ehrlichia ruminantium

ncbi_strain_identifiers: Grootvallei

ncbi_submitter: ARC - Onderstepoort Veterinary Research


ncbi_country: North Sea: outflow of Skagerrak

ncbi_organism_name: Pseudoruegeria sp. SK021

ncbi_submitter: University of Oldenburg, Insitute for Chemistry and Biology of the Marine Environment (ICBM)


ncbi_organism_name: Cutibacterium avidum ATCC 25577

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: USA: WA

ncbi_organism_name: Eikenella corrodens

ncbi_submitter: University of Washington


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Japan: Akita Prefecture; Okuokuhachikurou Onsen

ncbi_isolation_source: iron-rich hot spring biofilm

ncbi_organism_name: Thermosynechococcus sp. OHK43

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Shihezi University; Xinjiang

ncbi_organism_name: Brucella suis 019

ncbi_submitter: Nankai University


ncbi_isolation_source: human gut

ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: State University of Londrina


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Gemmataceae bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human skin

ncbi_organism_name: Lawsonella clevelandensis

ncbi_submitter: NIH/NHGRI


ncbi_country: China

ncbi_isolation_source: Out-of-house environment


ncbi_organism_name: Gallintestinimicrobium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-0824

ncbi_organism_name: uncultured Schlesneria sp.

ncbi_submitter: BILS


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC068H12

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_country: Netherlands

ncbi_organism_name: Enterococcus faecium EnGen0017

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacillus siamensis

ncbi_submitter: Guangxi University Of Chinese Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus siamensis


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: China: Qinghai

ncbi_isolation_source: soil

ncbi_organism_name: Dyadobacter sp. CY326

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_strain_identifiers: 2597PM;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_organism_name: Undibacterium luofuense


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_assembly_name: INIA P540

ncbi_isolate: INIA P540

ncbi_isolation_source: infant faeces

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: INIA P540

ncbi_submitter: UVEG


ncbi_country: China: Nagqu City; Tibet Autonomous Region

ncbi_isolation_source: Tibetan Gazelle

ncbi_organism_name: Nocardioides jishulii

ncbi_submitter: Chinese center for disease control and prevention


ncbi_isolate: SPRUCE 155

ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_strain_identifiers: SPRUCE 155

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Bacillota bacterium Lsc_1132

ncbi_submitter: Shanghai Ocean University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Bacillota bacterium Lsc_1132


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Streptococcus canis

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Vibrio aestuarianus subsp. francensis

ncbi_submitter: The Roslin Institute, University of Edinburgh


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Neisseria sp. P0022.S002

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: bacterium 1XD8-76

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacillus stercoris

ncbi_submitter: Public University of Navarra


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Germany

ncbi_isolation_source: feces from healthy individual

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_organism_name: Prevotella sp. CAG:279

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Sputum

ncbi_organism_name: Pseudomonas sp. Marseille-P9655

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Candidatus Atribacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert bare soil

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: IN

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA

ncbi_isolation_source: clinical

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_organism_name: Enterobacter rongchengensis

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Pseudescherichia vulneris

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Oribacterium sp.


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Nannocystaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Holdemanella biformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_isolation_source: Solanum tuberosum rhizosphere

ncbi_organism_name: Dickeya solani

ncbi_submitter: Intercollegiate Faculty of Biotechnology of University of Gdansk and Medical University of Gdansk


ncbi_country: China: Guangdong Province

ncbi_isolation_source: subtropical forest soil

ncbi_organism_name: Paraburkholderia sp. DHOC27

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Candidatus Brocadiaceae bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__unclassified Candidatus Brocadiaceae;s__Candidatus Brocadiaceae bacterium


ncbi_country: Pacific Ocean: South Pacific

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas aurantia

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Yinchuan

ncbi_genome_representation: partial

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. v-1-3

ncbi_submitter: North Minzu University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Malaysia

ncbi_isolation_source: lake water

ncbi_organism_name: Myroides marinus

ncbi_submitter: University of Malaya


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: EMG


ncbi_isolation_source: Human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Firmicutes bacterium AM31-12AC

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AM31-12AC


ncbi_isolation_source: derived from VB111

ncbi_submitter: Universite de Sherbrooke

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_name: freshwater MAG --- YR2_bin-1507

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: stool

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Goldcoast


ncbi_country: India: Puttaparthi

ncbi_isolation_source: Midstream Urine

ncbi_organism_name: Morganella morganii

ncbi_submitter: Sri Sathya Sai Institute of Higher Learning


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Arcicella rigui

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_country: Panama: Barro Colorado Island

ncbi_isolation_source: exoskeleton of ant

ncbi_organism_name: Pseudonocardia sp. EC080610-09

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Proteus terrae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: North Vancouver

ncbi_isolation_source: Ixodes angustus

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_organism_name: Candidatus Akkermansia timonensis

ncbi_submitter: Duke University


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: SAR86 cluster bacterium AG-422-P06

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium AG-422-P06


gtdb_type_species_of_genus: t

ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pedosphaera parvula Ellin514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Faeces


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 24845_6

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Japan

ncbi_isolation_source: drain drainage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_country: Slovenia

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Laboratory of Health, Environment and Food


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: MD

ncbi_organism_name: Chromobacterium violaceum

ncbi_submitter: US Food and Drug Administration


ncbi_country: France: Nantes

ncbi_isolation_source: respiratory tract infection

ncbi_submitter: AstraZeneca


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolate: AOP35_03H_surf _bin _29

ncbi_organism_name: Ancrocorticia populi

ncbi_strain_identifiers: AOP35_03H_surf _bin _29

ncbi_submitter: Genoscope


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University


ncbi_organism_name: Streptococcus anginosus


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptococcus thermophilus


ncbi_country: Antarctica

ncbi_isolation_source: Antarctica soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: University of New South Wales


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Gallimonas faecavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas faecavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas faecavium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_strain_identifiers: Tempeh 5N

ncbi_submitter: University College Cork


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolate: Aquimarina sp. AU119

ncbi_organism_name: Aquimarina sp. AU119

ncbi_strain_identifiers: Aquimarina sp. AU119

ncbi_submitter: UNSW


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Streptomyces sp. SID5910

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Streptomyces sp. NPDC048659

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Zhejiang

ncbi_isolation_source: gastroscopic antral biopsy specimen

ncbi_organism_name: Helicobacter pylori wls-5-5

ncbi_submitter: Academy of Military Medical Sciences


ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Minnesota


ncbi_organism_name: Faecalibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Geothrix sp.

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Chenzhou

ncbi_isolation_source: paddy soil

ncbi_organism_name: Bacillus sp. BP-3

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BP-3


ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan: Khyber Pakhtunkhwa

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Ileibacterium valens


ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Quanzhou Women's and Children's Hospital


ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: NCIMB 8536

ncbi_submitter: NIZO food research


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Coprococcus phoceensis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Streptomyces sirii

ncbi_submitter: The University of Sydney


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_submitter: Clemson University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterococcus sp. DIV1614a

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Zhejiang University


ncbi_submitter: EPFL


ncbi_country: USA: Wyoming

ncbi_isolation_source: Aquatic Environment

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: University of Wyoming


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Erythrobacteraceae bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Institute of Antibiotics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dialister sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: University of Georgia


ncbi_country: USA: Bokeelia Pier; Pine Island; FL

ncbi_isolation_source: Gill tissue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Stewartia floridana


ncbi_country: China: Xinjiang

ncbi_isolation_source: spleen

ncbi_organism_name: Brucella melitensis

ncbi_strain_identifiers: BL


ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC049879

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Eubacterium sp. CAG:248

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:248


ncbi_country: USA: FL

ncbi_organism_name: Escherichia coli DEC12B

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Cellulosilyticum sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_organism_name: Pseudactinotalea sp. Z1739

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Prochlorococcus sp. MIT 1327

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Methylobacterium sp. NPDC097213


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_submitter: Lebanese American university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Stenotrophomonas;x__Stenotrophomonas maltophilia group;x__unclassified Stenotrophomonas maltophilia group;s__Stenotrophomonas maltophilia group sp. CASM56


ncbi_organism_name: Shewanella sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Australia: Bendigo; Victoria

ncbi_isolation_source: gold mine

ncbi_organism_name: Guptibacillus hwajinpoensis

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Rhodoferax sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Variovorax sp. GB1R11

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Alistipes communis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Micromonospora harpali

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: University of Michigan


ncbi_assembly_name: freshwater MAG --- Ja2-D2_bin-0984

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces sp. JV176

ncbi_submitter: Washington University in St. Louis


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Szeged


ncbi_isolate: MAG

ncbi_isolation_source: nitrous oxide-reducing enrichment culture inoculated with deep-sea hydrothermal vent

ncbi_organism_name: Hydrogenimonas sp.

ncbi_strain_identifiers: MAG

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Science, Hokkaido University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute of Public Health NIH - National Research Institute


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Hand swabs

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: GADVASU, LUDHIANA, PUNJAB, INDIA


ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Laboratoire de sante publique du Quebec


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: DSDD

ncbi_submitter: Yangzhou University


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-05015

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: DTA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Ireland

ncbi_organism_name: Blautia sp. MCC270

ncbi_submitter: University College Cork


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: BGI


ncbi_isolation_source: Faeces


ncbi_country: China: Jiangsu

ncbi_isolation_source: chicken

ncbi_submitter: Yangzhou univeristy


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: AAFC


ncbi_organism_name: Nevskiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Texas Tech University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_isolation_source: Container with rainwater and mosquitoes

ncbi_organism_name: Chromobacterium sp. Rain0013

ncbi_submitter: University of Georgia


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: France: Grignon

ncbi_isolation_source: soil

ncbi_organism_name: Brucella anthropi

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Coprocola pullicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Coprocola;s__Candidatus Coprocola pullicola


ncbi_organism_name: Bacillus cereus VD133

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus VD133


ncbi_country: Australia: Melbourne

ncbi_isolation_source: sputum

ncbi_submitter: Monash University


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: vagina

ncbi_organism_name: Veillonella montpellierensis DNF00314

ncbi_submitter: J. Craig Venter Institute


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Switzerland

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Costa Rica

ncbi_organism_name: Candidatus Pantoea edessiphila

ncbi_strain_identifiers: SoEO

ncbi_submitter: Ohio State University


ncbi_assembly_name: Rumen uncultured genome RUG14610

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Aeriscardovia sp.


ncbi_assembly_name: Burkholderia  cenocepacia BCC0536

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: Enterocloster clostridioformis


ncbi_organism_name: Bacillus cereus group sp. Bce035

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bce035


ncbi_submitter: AIIMS, New Delhi


ncbi_country: USA: VA

ncbi_isolation_source: Young Turkeys

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59646F

ncbi_submitter: FDA


ncbi_country: South Korea

ncbi_organism_name: Acetobacter pasteurianus subsp. pasteurianus

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sediment

ncbi_organism_name: Paenibacillus antarcticus

ncbi_submitter: Kyungpook National University


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Viet Nam: Cao Phong; Hoa Binh

ncbi_isolation_source: soil of citrus sinensis plantation

ncbi_organism_name: Brevibacillus sp. HB1.4B

ncbi_submitter: ENDOBICA


ncbi_isolation_source: rhizosphere soil culture M56

ncbi_organism_name: Zhihengliuella sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: manure wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: USA: California

ncbi_isolation_source: aquarium

ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: University of California, Davis


ncbi_country: Austria: Rohrbach

ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis

ncbi_submitter: AGES


ncbi_organism_name: uncultured Sporosarcina sp.


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Streptomyces sp. NBC_01207

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: South Korea: Busan city

ncbi_isolation_source: Biofilter in a recirculating aquaculture system

ncbi_organism_name: Pukyongia salina

ncbi_submitter: Pukyong National University


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-P18

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Sherbrooke

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_country: Belgium

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Czechoslovakia

ncbi_isolation_source: water

ncbi_organism_name: Yersinia aldovae


ncbi_organism_name: Alistipes inops

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_submitter: Academy of Military Medical Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: University of Stirling


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Eubacterium ramulus


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Selenomonas flueggei

ncbi_submitter: EMG


ncbi_country: Liberia: Monrovia

ncbi_isolation_source: Peripheral blood

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: National Institute of Allergy and Infectious Diseases


ncbi_organism_name: Petrotogaceae bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Arcobacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Taiwan

ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis OFXR-9

ncbi_submitter: Broad Institute


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Treponema porcinum

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_submitter: Pau University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13069

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Pseudomonas sp. NPDC090202

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Lund University


ncbi_country: China: Guizhou

ncbi_isolation_source: Alveolar lavage fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: uncultured Coprobacillus sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_country: Germany: Oberpfalz; Neumarkt

ncbi_isolation_source: surface-sterilized wheat roots

ncbi_organism_name: Herbaspirillum hiltneri N3

ncbi_submitter: Universidade Federal do Parana


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Jersey

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Argentina: Copahue; Puerta de Trolope; Rio Agrio Inferior

ncbi_isolation_source: 0.22 Um filtrate of the Rio Agrio Inferior river water column sample collected from geothermal system Copahue-Caviahue-ChanchoCo

ncbi_organism_name: Acidocella sp.

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_organism_name: Pseudobacillus badius

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_country: USA: MD

ncbi_isolation_source: Pre-chill chicken carcass

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri;x__Mycoplasma mycoides subsp. capri LC;x__Mycoplasma mycoides subsp. capri str. GM12


ncbi_country: South Korea: Wanju

ncbi_isolation_source: Dust collector of pigpen

ncbi_organism_name: Pulveribacter suum

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Microbacterium sp. LMI12-1-1.1

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_organism_name: Xanthomonas sp. WCS2018Cala2-21

ncbi_submitter: Utrecht University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai University of Medicine and Health Sciences Affiliated Zhoupu Hospital


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_country: China

ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_country: South Africa: Westen Cape

ncbi_isolation_source: Paediatrics (neonatalogy)

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: USA: Seattle

ncbi_isolation_source: Shoulder wound

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Arthrobacter sp. Rue61a

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_isolation_source: USA

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Aliivibrio salmonicida

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: France

ncbi_isolation_source: forestomach

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: University of Alberta


ncbi_country: United Kingdom

ncbi_isolation_source: Farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Nottingham


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Acidovorax sp. 35-64-16


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Pauljensenia sp. UMB10120

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares swab

ncbi_organism_name: Dermabacter hominis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA:Los Angeles

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptomyces erythrochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Aggregatibacter segnis

ncbi_submitter: US Food and Drug Administration


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Methanobrevibacter smithii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: India:Pobitora Wildlife Sanctuary; Assam

ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces longispororuber

ncbi_submitter: Institute of Advanced Study in Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Oklahoma

ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Thermosipho sp. (in: thermotogales)

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;o__Thermotogales;f__Fervidobacteriaceae;g__Thermosipho;x__unclassified Thermosipho (in: thermotogales);s__Thermosipho sp. (in: thermotogales)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Geneva University Hospitals


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_organism_name: Asticcacaulis biprosthecium C19

ncbi_submitter: Indiana University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Brazil

ncbi_organism_name: Escherichia coli 90.2281

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Carnobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: [Ruminococcus] lactaris CC59_002D

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: Poland

ncbi_isolation_source: choana

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: EMG


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_country: Japan: Tokyo

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Toho University School of Medicine


ncbi_country: Antarctica: McMurdo Sound

ncbi_organism_name: Octadecabacter antarcticus 307

ncbi_submitter: Moore Foundation


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Yangjiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacilli bacterium


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Oxydemutator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Candidatus Oxydemutatoraceae;g__Candidatus Oxydemutator;x__unclassified Candidatus Oxydemutator;s__Candidatus Oxydemutator sp.


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Klebsiella sp. 1SIAk7mer

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Alteromonadaceae bacterium


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: China: Fujian

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH1901130

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: freshwater MAG --- VK2_bin-0061

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: University of Chicago


ncbi_organism_name: Tenacibaculum dicentrarchi

ncbi_submitter: Universidad Bernardo OHiggins


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: Australia: Haines; Kangaroo Island

ncbi_isolation_source: Slender Honey-Myrtle

ncbi_organism_name: Fructilactobacillus hinvesii

ncbi_submitter: The University of Adelaide


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Spain

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3682

ncbi_submitter: University of Queensland


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Handong Global University


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Haifa


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gemmatimonadales bacterium UBA829


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of South Africa


ncbi_country: Singapore

ncbi_isolation_source: Gastric biopsy tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National University of Singapore


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Marinoscillum sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonetes bacterium ADurb.Bin088


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Enterococcus hirae


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Delftia acidovorans


ncbi_organism_name: Leuconostoc gelidum

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chthonomonas sp. UBA2362


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: China: Xisha

ncbi_isolation_source: marine sponge

ncbi_organism_name: Rhodococcus xishaensis

ncbi_submitter: Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: freshwater MAG --- Loc090721-6m_bin-363

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Kenya: Kibera

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_organism_name: Borreliella burgdorferi N40

ncbi_submitter: University of Maryland School of Medicine - Institute for Genome Sciences


ncbi_organism_name: Macellibacteroides fermentans

ncbi_submitter: Linnaeus University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Cycloclasticus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Guangdong

ncbi_isolation_source: hot spring in the south of China

ncbi_organism_name: Thermoanaerobacterium aotearoense

ncbi_submitter: South China University of Technology


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: Farm

ncbi_submitter: ITACYL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Pseudarthrobacter sp. O4

ncbi_submitter: Wuhan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University Huashan Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Deinococcus sp.

ncbi_submitter: EPFL


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Marinobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: Spain:Mallorca; Balearic Islands

ncbi_isolation_source: subsurface water sample

ncbi_organism_name: Pseudomonas aeruginosa P49

ncbi_submitter: University of Balearic Islands


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Schinkia azotoformans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_assembly_name: Rumen uncultured genome RUG14333

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Department of Veterinary Microbiology Kamdhenu University Navsari


ncbi_isolation_source: pig gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Spain: Madrid

ncbi_organism_name: Escherichia coli

ncbi_submitter: IRYCIS


ncbi_organism_name: uncultured Selenomonadaceae bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Shandong; Zhucheng

ncbi_isolation_source: river water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong university


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermodesulfatator sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: Caldicellulosiruptor bescii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Costa Rica: Guanacaste Conservation Area

ncbi_isolation_source: insect

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_organism_name: Acidobacteriota bacterium


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pullichristensenella;s__Candidatus Pullichristensenella excrementipullorum


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_country: Canada:Athabasca Oil Sands

ncbi_isolation_source: waste water

ncbi_organism_name: Firmicutes bacterium UBA2269

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA2269


ncbi_assembly_name: Rumen uncultured genome RUG10575

ncbi_organism_name: uncultured Aeromonadales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: Nocardiaceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: municipal wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: University of Trento


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Montreal


ncbi_country: Norway: Skammestein

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp. 10.2.3

ncbi_submitter: Ludwig Maximilians University Munich


ncbi_isolation_source: leaves

ncbi_organism_name: Methylobacterium sp. WL116

ncbi_submitter: Aarhus University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Kribbella sp. VKM Ac-2566

ncbi_strain_identifiers: VKM Ac-2566

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Actinokineospora spheciospongiae

ncbi_strain_identifiers: CECT 8578


ncbi_country: Canada: Sudbury

ncbi_isolation_source: bronchoalveolar lavage; patient with a sporadic case

ncbi_strain_identifiers: Sudbury

ncbi_submitter: Public Health Ontario

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella;s__Legionella pneumophila;sb__Legionella pneumophila subsp. pneumophila;x__Legionella pneumophila subsp. pneumophila str. Sudbury


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: nasopharyngeal

ncbi_submitter: Harvard University


ncbi_country: USA: Virginia

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0125

ncbi_submitter: Broad Institute


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_assembly_name: freshwater MAG --- AM-2014-D8_bin-0534

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Puerto Rico

ncbi_isolation_source: Bromeliad Phytotelma at Carite Forest

ncbi_organism_name: Rhodopseudomonas sp. BR0C11

ncbi_submitter: University of Puerto Rico at Mayaguez


ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter venetianus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H75425


ncbi_organism_name: Sinimarinibacterium flocculans

ncbi_submitter: Xiamen University


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES