ncbi_assembly_name: Rumen uncultured genome RUG14812

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_assembly_name: Rumen uncultured genome RUG12180

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_country: South Korea

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Chryseobacterium sp. P1-3

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Japan

ncbi_organism_name: Pseudomonas savastanoi pv. glycinea

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. glycinea


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


gtdb_representative: t

ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Peptoniphilus sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Escherichia coli IS25

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_assembly_level: Chromosome

ncbi_country: Russia: Kazan

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: PRCCID


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F89062

ncbi_submitter: Broad Institute


ncbi_isolation_source: rumen

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA2834


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Frigoribacterium sp. PvP054

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG12844

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Brachybacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: Eubacterium coprostanoligenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: NY

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus DAR1810


ncbi_country: South Korea: Okcheon-gun

ncbi_isolation_source: riverside soil

ncbi_organism_name: Reyranella humidisoli

ncbi_refseq_category: reference genome

ncbi_submitter: Chungnam National University

ncbi_type_material_designation: assembly from type material


ncbi_country: France: Limoges

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Institut Pasteur


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_level: Complete Genome

ncbi_country: Norway

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Stavanger University Hospital


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Aggregatibacter aphrophilus


ncbi_isolation_source: soil

ncbi_organism_name: Megamonas sp. UBA1796


ncbi_organism_name: Paraglaciecola sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas sichuanensis

ncbi_submitter: Qingdao Agricultural University


ncbi_country: Kenya: Kisumu

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: Boston

ncbi_isolation_source: URINE

ncbi_organism_name: Escherichia coli BIDMC 71

ncbi_strain_identifiers: BIDMC 71

ncbi_submitter: Broad Institute


ncbi_country: Thailand: Ubon

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_country: South Korea: Seoul

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_country: India

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Jawaharlal Institute of Postgraduate Medical Education and Research


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site C

ncbi_isolation_source: Beach sand

ncbi_organism_name: Dactylosporangium sp.

ncbi_submitter: Monash University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Alteromonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Helicobacter hepaticus ATCC 51449


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: Herbs

ncbi_submitter: California Department of Public Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Veneziana


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Comenius University Science Park


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Milk powder plant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University of Zurich


ncbi_country: Japan

ncbi_organism_name: Mycobacterium kiyosense

ncbi_submitter: Department of Mycobacteriology, Leprosy Research Center, National Institute of Infectious Diseases - Japan


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Paenirhodobacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Kineococcus sp. SYSU DK021

ncbi_strain_identifiers: SYSU DK021

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Coprococcus phoceensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella sp. NW1095

ncbi_submitter: Sichuan University


ncbi_organism_name: Litorimonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_organism_name: uncultured Gaiellales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Veer Narmad South Gujarat University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: California; Cedars Spring

ncbi_isolation_source: spring water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Kunming

ncbi_isolation_source: feces

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_organism_name: Leptolyngbyales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_organism_name: Bacillus sp. F56

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. F56


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Germany: Freising

ncbi_isolation_source: MAP minced beef

ncbi_organism_name: Pseudolactococcus carnosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Throat and nasal swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Vibrio tetraodonis

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome RUG10768

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_submitter: The University of Sydney


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides uniformis


ncbi_country: Chile: Santiago

ncbi_isolation_source: oral mucosa

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad del desarrollo


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (not particle associated; <1 micrometer filter; predicted habitat is large-particle associated)

ncbi_organism_name: Vibrio cyclitrophicus FF75

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Dorea sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Russia: Borehole near Beyelii Yar in Tomsk

ncbi_isolation_source: groundwater filtered on 0.22 m filters

ncbi_organism_name: Slackia sp.

ncbi_submitter: University Duisburg-Essen


ncbi_genome_category: derived from environmental sample

ncbi_isolation_source: Greenhouse population of F. occidentalis

ncbi_submitter: Swansea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;x__unclassified Enterobacterales;s__bacteria symbiont BFo2 of Frankliniella occidentalis


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 4b;x__Listeria monocytogenes serotype 4b str. LIS0087


ncbi_isolation_source: soil

ncbi_organism_name: Pigmentiphaga sp. H8

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Actinomyces sp.


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Zhejiang provincial center for disease control and prevention


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_country: Colombia

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: JCVI


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD7106

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A55


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_country: Austria

ncbi_organism_name: Pedobacter cryoconitis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Sphingobium sp. SA2

ncbi_submitter: University of Technology Sydney


ncbi_country: Antarctica: Miers Valley

ncbi_isolation_source: Antarctic Hypolithon

ncbi_organism_name: Marivirga sp. ANT-B6

ncbi_submitter: CMEG University of Pretoria


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institutte


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Hunan

ncbi_isolation_source: monitor panel

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Geobacillus thermodenitrificans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Switzerland

ncbi_organism_name: Xanthomonas graminis pv. poae

ncbi_submitter: The Connecticut Agricultural Experiment Station

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas graminis;x__Xanthomonas graminis pv. poae

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Ignavibacterium sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_country: USA

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Hydrogenophaga intermedia

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: EMG


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_country: Colombia: Medellin

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: Bronchial lavage sample

ncbi_organism_name: Mycolicibacterium monacense DSM 44395

ncbi_submitter: Uppsala University


ncbi_organism_name: Spiroplasma sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: Streptomyces sp. NPDC029004

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: Northern Illinois University


ncbi_country: USA:Durham; North Carolina

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Duke University


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Mycobacterium avium

ncbi_submitter: University of Michigan Medical School


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: FISABIO - Public Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU087

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Pelistega suis

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Pelistega indica

ncbi_submitter: EMG


ncbi_organism_name: Paraburkholderia oxyphila NBRC 105797

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Candidatus Magnetaquicoccus inordinatus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured cyanobacterium


ncbi_organism_name: Rahnella variigena

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Nonlabens sp. Asnod3-H03

ncbi_submitter: Station Biologique de Roscoff


ncbi_organism_name: Candidatus Scatomorpha merdavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha merdavium


ncbi_organism_name: Streptomyces canus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: University of Bucharest


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: artificial municipal wastewater in bioreactor

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Peking University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp6 AA37

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp6 AA37

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Blautia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: McGill University


ncbi_country: Germany: Sylt

ncbi_isolation_source: hemolymph

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: NORHED grant


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IDBA-UD

ncbi_organism_name: Qipengyuania vulgaris

ncbi_submitter: UTM


ncbi_isolation_source: goat rumen

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: Canada: Rouyn-Noranda

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: manure wastewater

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Synlogic


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Corynebacterium sp.


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


gtdb_type_species_of_genus: t

ncbi_organism_name: Simplicispira metamorpha

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: MD

ncbi_isolation_source: post chill chicken carcass

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: United Kingdom: Woodley Reading

ncbi_isolation_source: municipal solid waste (MSW) soil

ncbi_organism_name: Paenibacillus sp. B2(2019)

ncbi_submitter: Brazilian Center for Research in Energy and Materials (CNPEM)


ncbi_country: Malaysia

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of New South Wales


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium ferriphilum


ncbi_organism_name: Rhizomicrobium sp.


ncbi_country: USA

ncbi_submitter: Entasis Therapeutics


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: freshwater MAG --- Loclat_bin-05083

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: India

ncbi_isolation_source: broiler feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Mahatma Gandhi University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter baumannii 44467_10

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Greece: Piraeus

ncbi_isolation_source: blood

ncbi_submitter: University of Florence


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides fragilis str. J-143-4

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. J-143-4


ncbi_isolation_source: Pre-slaughter chicken

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: Serbia: Begec

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_submitter: University Medical Center Groningen


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium RIFCSPLOWO2_02_FULL_63_16


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Finland: Baltic Sea

ncbi_isolation_source: Brackish water

ncbi_organism_name: Aphanizomenon sp. UHCC 0183

ncbi_strain_identifiers: UHCC 0183

ncbi_submitter: University of Helsinki


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Basel


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_country: USA: Texas

ncbi_isolation_source: bovine feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Paramuribaculum sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: University of Georgia


ncbi_country: China: Guangdong

ncbi_isolation_source: cloacal swab

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Tuckerton; New Jersey

ncbi_organism_name: Vibrio sp. T9

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Malaysia: Rimba Ilmu

ncbi_isolation_source: soil

ncbi_organism_name: Dyella japonica A8

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Pyramidobacter piscolens

ncbi_submitter: University of Alberta


ncbi_country: India: Bangalore

ncbi_isolation_source: Raw milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus UCIM6080

ncbi_submitter: Broad Institute


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Shandong;Weihai

ncbi_isolation_source: marine sediment sample

ncbi_organism_name: Carboxylicivirga sediminis

ncbi_submitter: Shandong University at Weihai


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium CG11_big_fil_rev_8_21_14_0_20_41_19


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: Throat


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_country: France

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: BGI


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: lake water

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Caldilinea sp.


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: USDA


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Department of Microbiology, Tokyo Metropolitan Institute of Public Health


ncbi_submitter: University of Surrey


ncbi_organism_name: uncultured Methyloversatilis sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Zhengzhou University


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: ocean university of china


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: San Fransisco

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Clostridia bacterium


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Sphingobacterium athyrii


ncbi_isolation_source: citrus fruit food product

ncbi_organism_name: Enterococcus innesii

ncbi_submitter: Medical Affairs, Glaxosmithkline


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sagittula sp.

ncbi_submitter: Xiamen University


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Oligella urethralis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA: Woods Hole

ncbi_isolation_source: polyp tissue

ncbi_organism_name: Pseudoalteromonas sp. P1-26

ncbi_submitter: Hans Knoell Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;s__Candidatus Jorgensenbacteria bacterium RIFCSPLOWO2_01_FULL_45_25b


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: Thailand: Phrae

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium UBA2191


ncbi_country: USA: Arizona

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apis

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_country: South Africa: North West Province

ncbi_isolation_source: soil

ncbi_organism_name: Photorhabdus heterorhabditis

ncbi_strain_identifiers: VMG

ncbi_submitter: University of Witwatersrand


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Bean leaf

ncbi_organism_name: Xanthomonas cannabis

ncbi_strain_identifiers: CFBP 8592

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Denmark: Rigshospitalet; Copenhagen

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii 48055

ncbi_submitter: SCELSE


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnoclostridium edouardi

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: South Africa: Port Elizabeth

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: University of the Western Cape


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: WTSI


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Papua New Guinea

ncbi_isolate: Dental Plaque

ncbi_isolation_source: New Guinea Indigenes

ncbi_organism_name: Streptococcus mutans

ncbi_strain_identifiers: NG8;Dental Plaque

ncbi_submitter: University of Florida


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: China Agricultural University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Acidaminococcus fermentans


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: Tracheal aspiration

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Peking University


ncbi_organism_name: Sphingobacterium multivorum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Tenacibaculum dicentrarchi

ncbi_submitter: INRA


ncbi_organism_name: Finegoldia magna ALB8

ncbi_submitter: Lund University


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: BGQ

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: BGQ

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Mycobacterium avium

ncbi_submitter: Friedrich-Loeffler-Institut, Institute of Molecular Pathogenesis


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_name: IMG-taxon 2693429883 annotated assembly

ncbi_organism_name: Flavobacterium degerlachei

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Cecum

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_country: Switzerland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_country: South Korea:Chungcheongbuk-do

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Yonsei University


ncbi_country: USA: Alabama

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CDC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Zhejiang University


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient6 sputum

ncbi_submitter: Shenzhen People Hospital


ncbi_assembly_name: IMG-taxon 2597490345 annotated assembly

ncbi_organism_name: Sinorhizobium meliloti


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Israel: Beer-Sheva

ncbi_isolation_source: Oropharyngeal Swab

ncbi_organism_name: Kingella negevensis

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: Left guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: India: Chennai

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EBI


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin swab

ncbi_organism_name: Helcobacillus massiliensis

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: South Africa: Western Cape

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 48

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Arthrobacter sp. 9MFCol3.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The Third Affiliated Hospital of Zhengzhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Nakhon Ratchasima

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC006140

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Ectopseudomonas hydrolytica

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Neisseria sp. P0024.S006

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Nevada, Reno


ncbi_organism_name: Oenococcus sicerae

ncbi_submitter: Teagasc


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Coprococcus phoceensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_submitter: University of KwaZulu-Natal


ncbi_assembly_name: uncultured UBA10364 Flavobacteriales SW03_Bin3

ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: iBB-IST


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R371;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: University of Calgary


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Flammeovirgaceae bacterium UBA2019

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: University of Utah


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Rhodothermia bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: ground beef

ncbi_organism_name: Escherichia coli 8.0569

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: CEBITEC


ncbi_isolation_source: Anode biofilm

ncbi_organism_name: Thiomonas sp. UBA7699

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp. UBA7699


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Salmonella enterica CVM N45412 v1.0

ncbi_country: USA: WA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Canada: Lacombe

ncbi_organism_name: Roseburia sp.

ncbi_submitter: AAFC


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: South Africa

ncbi_isolation_source: Fresh produce

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: UPMP 1711

ncbi_submitter: University of Pretoria


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Moraxella sp. CTOTU46711


ncbi_organism_name: Klebsiella sp. JB_Kp004

ncbi_submitter: Max Rubner-Institut


ncbi_country: Canada: Ontario

ncbi_submitter: Ministry of Health, National Public Health Laboratory


ncbi_country: USA:La Jolla; California

ncbi_isolation_source: kelp frond

ncbi_organism_name: Vibrio sp. ED002

ncbi_submitter: Flinders Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chulabhorn Graduate Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Iowa State University


ncbi_isolation_source: cold seep

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Fusobacterium vincentii

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Escherichia coli O104:H4 str. C227-11

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. C227-11


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Haiti

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-59B1

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Sutterellaceae bacterium


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Netherlands

ncbi_isolation_source: sugar beet rhizosphere

ncbi_organism_name: Pirellula sp. SH-Sr6A

ncbi_submitter: NIOO-KNAW


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcaceae bacterium AM104-70

ncbi_submitter: BGI-Shenzhen


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: United Kingdom: Coventry

ncbi_isolation_source: Phyllosphere

ncbi_organism_name: Phyllobacteriaceae bacterium CO17

ncbi_submitter: University of Warwick


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter sp. GD03983

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_country: China: Guangzhou

ncbi_isolation_source: bed curtain

ncbi_submitter: University of Birmingham


ncbi_country: USA: Bronx; NY

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Candidatus Nanopelagicus sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;x__unclassified Candidatus Nanopelagicus;s__Candidatus Nanopelagicus sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Witwatersrand


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium GW2011_GWF1_36_5


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Idiomarina sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater from Yellow Sea

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1046051

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: South China Sea

ncbi_organism_name: Candidatus Vondammii sp. HM_W22

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;g__Candidatus Vondammii;x__unclassified Candidatus Vondammii;s__Candidatus Vondammii sp. HM_W22


ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium frigoriphilum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Suzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Suzhou Hospital of Traditional Chinese Medicine


ncbi_country: China: Jilin

ncbi_organism_name: Bartonella apis

ncbi_submitter: China Agricultural University


ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_strain_identifiers: NT-I

ncbi_submitter: Osaka University


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Academy of Military Medical Sciences


ncbi_assembly_name: freshwater MAG --- Umea_bin-02159

ncbi_isolation_source: lake water

ncbi_organism_name: Enhydrobacter aerosaccus

ncbi_submitter: BILS


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Micromonospora sp. NPDC049107

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Centre of Biotechnology of Sfax


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Montreal


ncbi_country: Belgium

ncbi_organism_name: Psittacicella melopsittaci

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD18486

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: SC


ncbi_country: Denmark

ncbi_isolation_source: kidney

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Japan

ncbi_organism_name: Actinosynnema pretiosum subsp. auranticum

ncbi_submitter: Shanghai Jiaotong University


ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: AIIMS, New Delhi


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Hydrogenovibrio thermophilus

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_organism_name: Fusobacterium sp. HC1336

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USDA-ARS


ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Chloroherpetonaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Finnish Food Authority


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_strain_identifiers: Colorado 459

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Firmicutes bacterium AF22-6AC

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF22-6AC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_isolate: Gammaproteobacteria sp. RBC015

ncbi_isolation_source: wastewater biofilm

ncbi_strain_identifiers: Gammaproteobacteria sp. RBC015

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: New Zealand

ncbi_isolation_source: routine screen

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_organism_name: Lentisphaeria bacterium


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_country: China: Guangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sun Yat-sen University


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_organism_name: Cupriavidus plantarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia ruysiae

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F54461

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: IA

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Prevotella pallens


ncbi_organism_name: Candidatus Thiodiazotropha sp. CDECU1

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Brazil: Araruama; hypersaline lagoon system

ncbi_isolation_source: microbial mat from hypersaline lagoon

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: Negativibacillus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__unclassified Negativibacillus;s__Negativibacillus sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_country: Australia: Cairns

ncbi_isolation_source: Pooled mosquitoes from single mosquito trap

ncbi_organism_name: Wolbachia endosymbiont of Aedes aegypti

ncbi_submitter: Monash University


ncbi_country: India: Jaipur

ncbi_isolation_source: plant

ncbi_organism_name: Leuconostoc sp. MTCC 10508

ncbi_submitter: Center of Innovative and Applied Bioprocessing (CIAB)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;x__unclassified Leuconostoc;s__Leuconostoc sp. MTCC 10508


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Geobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG11505

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Harrisonbacteria bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Harrisoniibacteriota;x__unclassified Candidatus Harrisonbacteria;s__Candidatus Harrisonbacteria bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Colorado Springs; CO

ncbi_organism_name: Pseudomonas silensiensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Alberta

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillota bacterium


ncbi_country: USA: North Carolina

ncbi_isolation_source: spinal lesion

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: NC State University


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: biofilm

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;s__Candidatus Collierbacteria bacterium UBA2277


ncbi_country: USA: MD

ncbi_organism_name: Aeromonas sp. FDAARGOS 1404

ncbi_strain_identifiers: FDAARGOS 1404

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Weihai

ncbi_isolation_source: marine sediment

ncbi_organism_name: Tenacibaculum pelagium

ncbi_submitter: Shandong University,Weihai


ncbi_country: Iran: Javadabad

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: IZSAM


ncbi_country: Bangladesh: Dhaka

ncbi_organism_name: Escherichia coli CE516

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC050145

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Taiwan

ncbi_isolation_source: hospital

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Sungiibacteriota;s__Candidatus Sungbacteria bacterium RIFCSPHIGHO2_01_FULL_47_32


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus intestinalis


ncbi_organism_name: Streptomyces aurantiacus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: laboratory strain

ncbi_strain_identifiers: 4083H attTn7:: Ptrc-gfpUV-cat;1 lactose operon;bright fluorescence;CFSAN070643

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: South Africa: King Edward VIII Hospital

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0085

ncbi_submitter: Broad Institute


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Aeromonadales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: Canada: Quebec

ncbi_isolation_source: environmental

ncbi_organism_name: Parenemella sanctibonifatiensis

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Croatia

ncbi_organism_name: Acinetobacter baumannii A424

ncbi_submitter: University of Leicester


ncbi_organism_name: Bacillus sp. A1(2020)

ncbi_submitter: microbial pathogenic ecology group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. A1(2020)


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Buchnera aphidicola (Nurudea yanoniella)

ncbi_submitter: Shanxi University


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: feces; dairy cow

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. CFSAN004346


ncbi_country: Hungary: Kompolt

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: South Korea

ncbi_isolation_source: eutrophication lake

ncbi_organism_name: Panacibacter microcysteis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: China: Zhaoqing

ncbi_isolation_source: sushi

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Center for Disease Control and Prevention of zhaoqing


ncbi_country: USA: MS

ncbi_strain_identifiers: Transconjugant 21A

ncbi_submitter: Univ Mississippi Medical Center


ncbi_country: USA: Starke County; Indiana

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Max Planck Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: China: Guangxi

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Candidatus Sericytochromatia bacterium

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__unclassified Candidatus Sericytochromatia;s__Candidatus Sericytochromatia bacterium


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Streptomyces sp. NPDC059168

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: SP

ncbi_organism_name: Mycobacterium sp. 012931

ncbi_submitter: Gyeongsang National University


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Candidatus Ozemobacter sp.

ncbi_submitter: The Ohio State University

ncbi_taxonomy: d__Bacteria;p__;c__Candidatus Ozemobacteria;o__;f__Candidatus Ozemobacteraceae;g__Candidatus Ozemobacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;c__Candidatus Ozemobacteria;x__Candidatus Ozemobacterales;f__Candidatus Ozemobacteraceae;g__Candidatus Ozemobacter;x__unclassified Candidatus Ozemobacter;s__Candidatus Ozemobacter sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Hangzhou

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Weihai

ncbi_isolation_source: marine sediment

ncbi_organism_name: Flavobacteriaceae bacterium LYZ1037

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Zhejiang A and F University


ncbi_country: Russia: Tambov region

ncbi_isolation_source: liver

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SRCAMB


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC091212


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Prevotella sp. CAG:755

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI


ncbi_isolation_source: rumen

ncbi_organism_name: Cyanobacteria bacterium UBA2855

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA2855


ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_country: Germany: Frankfurt

ncbi_isolation_source: Tissue samples (liver; spleen; lung; heart; kidney; ovaries; gut; and skin)

ncbi_organism_name: Brucella sp. 10RB9214

ncbi_submitter: University of Virginia


ncbi_country: Switzerland

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin93

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MSU bin93

ncbi_submitter: Monash University


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Salmonella sp. NW1099

ncbi_submitter: Sichuan University


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Tuebingen University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: Rumen uncultured genome RUG13217

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Megasphaera sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Pontibacter sp. JAM-7

ncbi_submitter: Sungkyunkwan University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: CRN 7

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bordetella avium 197N

ncbi_submitter: Sanger Institute


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pigmentiphaga daeguensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Netherlands


ncbi_country: China: Yunnan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- AM-2014-D4_bin-198

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: freshwater MAG --- Ja1-D5_bin-795

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Denmark

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_organism_name: Mobiluncus mulieris


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Belgium

ncbi_isolation_source: cecal content

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Warsaw University of Life Sciences (SGGW)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Germany: Bremen

ncbi_isolation_source: continuous bioreactor NO_5109 inoculated with denitrifying sludge is constantly fed with nitric oxide and formate

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Max-Planck for Marine Microbiology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterobacter sp. MGH 2

ncbi_strain_identifiers: MGH 2

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH 2


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Mycoplasmopsis cynos

ncbi_submitter: University of Guelph


ncbi_organism_name: Mesorhizobium shangrilense

ncbi_submitter: Sangji University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0755


ncbi_organism_name: uncultured Candidatus Peribacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Blacksberg; Virginia

ncbi_isolation_source: human oral cavity

ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: The Forsyth Institute


ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Oregon State University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium 504

ncbi_submitter: Washington University


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Germany

ncbi_isolation_source: culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: University of California Davis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology