ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: OK; Oklahoma State University

ncbi_genome_representation: full

ncbi_isolation_source: tick colony

ncbi_strain_identifiers: FLE-Am

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;x__unclassified Francisella;s__Francisella endosymbiont of Amblyomma maculatum


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Ocean

ncbi_organism_name: Prochlorococcus marinus str. LG

ncbi_strain_identifiers: LG

ncbi_submitter: MIT


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_assembly_level: Complete Genome

ncbi_country: USA:Maryland Frederick

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. incanae

ncbi_submitter: Cornell University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: Beer

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Microbiology and Fermentation


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Loc090721-7m_bin-447

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Dominican Republic

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium yuanmingense

ncbi_submitter: Universidad de Salamanca


ncbi_assembly_name: Rumen uncultured genome RUG13380

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: uncultured Nitrosomonas sp.

ncbi_submitter: Lund University


ncbi_organism_name: Shewanella baltica OS185

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Paenibacillus sp. RC80

ncbi_submitter: University of Massachusettes-Amherst


ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis

ncbi_submitter: National Institute of Infectious Diseases Control and Prevention


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: PA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA ARS


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID1046

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: University of Kansas


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-222-05_S4_C3

ncbi_submitter: IGS


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Acidimicrobiaceae bacterium TMED77

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Greece

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Chromosome

ncbi_country: Canada: British Columbia

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20121744


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: termite gut

ncbi_organism_name: Ruminococcaceae bacterium UBA945

ncbi_submitter: University of Queensland


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_01_FULL_41_44


ncbi_country: Italy: Rome

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_country: Italy: Florence

ncbi_isolation_source: pharyngeal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: swab isolate 1;2389PM

ncbi_submitter: University of California, Davis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Netherlands

ncbi_isolation_source: plant tissue

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Sorbonne University


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: metabat2_XCR1_HET_6734_bwa.166 MAG

ncbi_organism_name: Mammaliicoccus lentus

ncbi_strain_identifiers: metabat2_XCR1_HET_6734_bwa.166 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Streptomyces sp. 900105245

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Streptomyces luteogriseus

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aceris;x__Pseudomonas syringae pv. aceris str. M302273


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_assembly_name: freshwater MAG --- MJ-2014-D3_bin-680

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: University of York


ncbi_country: Australia: Sydney

ncbi_isolation_source: urine

ncbi_submitter: University of Technology Sydney


ncbi_assembly_name: Burkholderia  cenocepacia BCC0275

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Belgium

ncbi_isolation_source: Burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: chicken breast

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Czech Republic: Prague

ncbi_isolation_source: Urine permanent catheter

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Charles University in Prague


ncbi_organism_name: Bifidobacterium mongoliense

ncbi_submitter: University of Parma


ncbi_country: Canada: Nova Scotia

ncbi_isolation_source: lichen thallus

ncbi_organism_name: Nostoc sp. NMS2

ncbi_submitter: University of Liege


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0156

ncbi_submitter: Broad Institute


ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Norway: Bergen

ncbi_isolation_source: Pulmonary abscess

ncbi_organism_name: Eikenella corrodens

ncbi_submitter: Haukeland University Hospital


ncbi_country: Finland

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: China: No. 135; Xingang Xi Road; Guangzhou

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_country: United Kingdom: Edinburgh

ncbi_isolation_source: Laboratory reference strain

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Bath


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_isolate: AOP5_B1_surf _bin _2

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP5_B1_surf _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Shewanella mangrovisoli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Prevotellaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_organism_name: Klebsiella sp. PB4

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Caulobacter henricii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_organism_name: Streptomyces sp. bgisy032

ncbi_submitter: BGI Research


ncbi_organism_name: Barnesiella intestinihominis


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Rhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Morganella morganii

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_assembly_name: Bifreu

ncbi_isolation_source: Feces of common marmoset

ncbi_organism_name: Bifidobacterium reuteri DSM 23975

ncbi_submitter: University of Parma


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Sierra Nevada National Park

ncbi_isolation_source: holm-oak rizhospheric soil

ncbi_organism_name: Arthrobacter sp. AFG20

ncbi_submitter: Estacion Experimental del Zaidin - CSIC


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Capnocytophaga granulosa


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Chicago


ncbi_country: China: Jilin

ncbi_organism_name: Bifidobacterium sp. W8107

ncbi_submitter: China Agricultural University


ncbi_isolation_source: marine

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Desulfotignum sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1617 from squamous cell carcinomas patient MST026

ncbi_organism_name: Staphylococcus epidermidis


ncbi_isolation_source: human skin

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: South Korea

ncbi_organism_name: Sulfitobacter donghicola

ncbi_submitter: Kyungpook National University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-314

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Flavobacteriales bacterium

ncbi_strain_identifiers: new MAG-314

ncbi_submitter: Micoorganism


ncbi_country: China

ncbi_isolation_source: marine sediment

ncbi_organism_name: Nocardioides sp. YIM 152315

ncbi_submitter: Yunnan University


ncbi_organism_name: Cardiobacterium hominis


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED34

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED34


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: California Institute of Technology


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Chemostat culture

ncbi_organism_name: Pseudomonas aeruginosa UCBPP-PA14

ncbi_submitter: Instituto de Ciencias Biomedicas - Universidade de Sao Paulo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Acutalibacter muris


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Mahidol University


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_organism_name: Sphingomonas koreensis NBRC 16723

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_isolation_source: blood

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: University of Rochester Medical Center


ncbi_assembly_name: Rumen uncultured genome RUG12229

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pennsylvania

ncbi_submitter: South American MRSA Consortium


ncbi_submitter: KU Leuven


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: Cell culture medium

ncbi_organism_name: Stenotrophomonas acidaminiphila

ncbi_submitter: Yangzhou University


ncbi_assembly_name: Rumen uncultured genome RUG13076

ncbi_organism_name: Eubacterium ruminantium


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Desulfurivibrionaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: commercial yoghurt

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Food Industry Research and Development Institute


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Frigoribacterium sp. CFBP 8766

ncbi_submitter: INRAE


ncbi_organism_name: Bacteroides uniformis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Brumimicrobium sp.

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFOXYA2_FULL_41_8


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Synergistaceae bacterium UBA5302

ncbi_submitter: University of Queensland


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Municipal Center for Diseases Control and Prevention


ncbi_country: Japan: Kanto

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Leicester


ncbi_organism_name: Lactobacillus intestinalis


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Universidad Juarez Autonoma de Tabasco

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Poland

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Warsaw University of Life Sciences (SGGW)


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M020S1

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: CYRTOsp

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_submitter: RIVM


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Clostridium phoceensis


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Cetobacterium sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Sutterella wadsworthensis


ncbi_isolate: SPRUCE 684

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 684

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Rhodopila sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: China: Qingdao

ncbi_isolation_source: Activated sludge collected from a printing and dyeing factory in Qingdao; China.

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Ocean University of China


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Verrucomicrobia bacterium UBA1200

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA1200


ncbi_country: France: Marseille

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: IHU Mediteranee Infection


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Sweden: University of Goteborg

ncbi_isolation_source: Cerebrospinal fluid

ncbi_organism_name: Actinomyces naeslundii

ncbi_submitter: King's College London


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-2074

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Norway: Viken

ncbi_isolation_source: Milk filter

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: China: China University of Geosciences Beijing

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: South Korea: Anseong-si

ncbi_isolation_source: rice field

ncbi_organism_name: Fluviicola chungangensis

ncbi_refseq_category: reference genome

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Eggerthella timonensis

ncbi_submitter: URMITE


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: AIT AUSTRIAN INSTITUTE OF TECHNOLOGY


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_submitter: Ausgem


ncbi_country: China: Jiaxing; Zhejiang

ncbi_isolation_source: duck gizzard

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__candidate division BRC1 bacterium ADurb.Bin183


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Enterococcus sp. AZ084

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: California; Davis

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: South Korea: Cheonan

ncbi_isolation_source: vaginal secretions

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Probiotics Microbiome Convergence Center


ncbi_organism_name: Mesorhizobium sp. M1182

ncbi_submitter: Washington State University


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Calgary


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: perianal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sao Paulo


ncbi_country: Colombia: Bogota

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: EMG


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Spain: Santa pola

ncbi_isolation_source: banquettes

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: University of Alicante


ncbi_organism_name: Streptococcus agalactiae CCUG 44050

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Bielefeld University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium MD308

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Papua New Guinea: Hoia Bay

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Symploca sp. SIO2E9

ncbi_submitter: UCSD


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: National Vererinary Research Intitute


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Linnaeus University


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Green_AA_3

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Streptomyces sp. SCSIO 75703

ncbi_strain_identifiers: SCSIO 75703

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_country: Czech Republic: Brno

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: France

ncbi_organism_name: Clostridium tetani

ncbi_submitter: Aarhus University


ncbi_isolation_source: sputum(induced)

ncbi_organism_name: Rothia sp. HMSC071B01

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC071B01


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: China: Hangzhou

ncbi_isolation_source: Arteriovenous catheter

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hangzhou First People's Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: Instituto Nacional de Rehabilitacion


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Sphingomonas sp. 66-10

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: freshwater MAG --- Umea2p3_bin-0063

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_country: Germany

ncbi_isolation_source: pasteurized milk

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Microbacterium wangruii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Australia

ncbi_isolation_source: Shoot

ncbi_organism_name: Xanthomonas sp. SS

ncbi_strain_identifiers: SS

ncbi_submitter: AgriBio


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 5482

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces sp. B21-104

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_organism_name: Filomicrobium sp.

ncbi_submitter: Lomonosov Moscow State University, Faculty of Biology


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: Candidatus Sericytochromatia bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__unclassified Candidatus Sericytochromatia;s__Candidatus Sericytochromatia bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10752

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_country: Peru: Lima

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Nocardia rhizosphaerihabitans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC056375


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Desulfotignum sp.

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: [Ruminococcus] lactaris


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_assembly_name: freshwater MAG --- Umea1_bin-2153

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Roseburia hominis


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_organism_name: Streptomyces sp. NPDC048669


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Germany: Querenburg; Bochum

ncbi_isolation_source: wet mud

ncbi_organism_name: Leifsonia shinshuensis

ncbi_submitter: Ruhr University Bochum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0112

ncbi_submitter: Broad Institute


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Anaerovibrio slackiae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Semi-finished fish

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Institute of Experimental Medicine


ncbi_organism_name: Type-F symbiont of Plautia stali

ncbi_submitter: The Open University of Japan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__unclassified Enterobacteriaceae;s__Type-F symbiont of Plautia stali


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Ghent University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Australia: Brisbane

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.878 MAG

ncbi_isolate: bin.878 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Opitutia bacterium UBA7350

ncbi_strain_identifiers: bin.878 MAG

ncbi_submitter: IDAEA-CSIC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA7350


ncbi_organism_name: Siminovitchia terrae


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_submitter: University of Tartu


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Universidad Austral de Chile


ncbi_country: China: Sichuang

ncbi_isolation_source: aquarium water

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Micromonospora wenchangensis

ncbi_submitter: BGI Research


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_isolation_source: Halichoerus grypus

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Copenhagen


ncbi_isolate: Clostridium neonatale C25

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale C25

ncbi_submitter: universite paris cite


ncbi_country: China: Guangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangzhou center for disease control and prevention


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Helicobacteraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Urinary tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


gtdb_type_species_of_genus: t

ncbi_country: Germany

ncbi_isolation_source: activated sludge

ncbi_organism_name: Castellaniella defragrans

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Democratic Republic of the Congo

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Contaminated Plate

ncbi_submitter: JLU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. chlororaphis


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Methylobacterium sp. Leaf91

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: EMG


ncbi_country: Belgium: Comblain-au-Pont

ncbi_isolation_source: cave

ncbi_organism_name: Streptomyces lunaelactis

ncbi_submitter: Center for Protein Engineering


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Zurich


ncbi_country: Greece: Santorini; Kolumbo

ncbi_isolation_source: submarine volcano

ncbi_organism_name: Stutzerimonas frequens

ncbi_submitter: Hellenic Centre for Marine Research (HCMR)


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Federal Universaty of Tocantins


ncbi_organism_name: Funiculus sociatus GB2-M1

ncbi_submitter: Institute of Hydrobiology


ncbi_assembly_name: keburonensis

ncbi_organism_name: Kingella negevensis

ncbi_submitter: CHUV-UNIL


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei MSHR7527

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Yersinia aleksiciae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: oral cavity

ncbi_organism_name: Alloprevotella rava F0323

ncbi_submitter: Broad Institute


ncbi_country: Italy: Genoa

ncbi_isolation_source: wound

ncbi_organism_name: Enterococcus faecium E1165

ncbi_submitter: Department of Medical Microbiology, University Medical Center Utrecht


ncbi_country: Brazil: Paraiba

ncbi_isolation_source: goat milk

ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: LAPOA-Federal University of Paraiba (UFPB)


ncbi_organism_name: Sporomusa sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Spain: Asturias

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: University of Alberta


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: HeBei

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Alistipes communis

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: South Africa: King Dinuzulu Hospital

ncbi_isolation_source: sputum


ncbi_organism_name: Mediterraneibacter faecis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Streptomyces sp. NPDC059837

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: University of Parma


ncbi_organism_name: Acinetobacter sp. P1(2025)

ncbi_submitter: Tianjin University of Technology


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Neolewinella sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_organism_name: Citrobacter amalonaticus

ncbi_strain_identifiers: STnew

ncbi_submitter: University Medicine Greifswald


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Denmark: Esbjerg E

ncbi_isolation_source: activated sludge from EsbE_18-Q3-R3-47

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium tibiigranuli

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_organism_name: Streptomyces sp. NPDC005181

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Spain: Santander

ncbi_isolation_source: clinical

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Federal University of Bahia


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R448;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: surface seawater cellected at Malvarrosa beach; Valencia; Spain

ncbi_organism_name: Falsiruegeria litorea R37

ncbi_strain_identifiers: CECT 7639

ncbi_submitter: UVEG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Enterococcus sp. DIV0496

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Thalar

ncbi_country: South Korea

ncbi_organism_name: Litoreibacter arenae DSM 19593

ncbi_submitter: Roseobacter SFB


ncbi_organism_name: Scardovia wiggsiae

ncbi_submitter: Department of Science and Technology of Henan Province,Finance Department of Henan province,Health C


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: The Federal Research Centre "Fundamentals of Biotechnology" of the Russian Academy of Sciences


ncbi_submitter: UK Health Security Agency


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Kenya

ncbi_organism_name: Lachnospiraceae bacterium UBA6436

ncbi_submitter: University of Queensland


ncbi_organism_name: Buchnera aphidicola (Mindarus abietinus)

ncbi_submitter: Centre for Microbiology and Environmental Systems Science


ncbi_country: Portugal

ncbi_isolation_source: sewage sludge compost

ncbi_organism_name: Candidimonas humi

ncbi_submitter: ELTE Eotvos Lorand University


ncbi_country: China: Dongguan

ncbi_organism_name: Salmonella sp. 15E65

ncbi_submitter: South China Agricultural University


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 2

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.1 filter

ncbi_organism_name: Flavobacteria bacterium GWF1_32_7

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;x__unclassified Flavobacteriia;s__Flavobacteria bacterium GWF1_32_7


ncbi_country: China: Yunnan

ncbi_isolation_source: tobacco leaves

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Yunnan Academy of Tobacco Agriculture Science


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: The REHAB Consortium


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Gansu Provincial People's Hospital


ncbi_country: Japan:Hokkaido; Sapporo; Jozankei hot spring

ncbi_isolation_source: microbial mat

ncbi_organism_name: Sulfuricystis multivorans

ncbi_submitter: The Institute of Low Temperature Science, Hokkaido University


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: intestine porcine (Sus domesticus)

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Bifidobacteriaceae bacterium MCC02036

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_country: Singapore

ncbi_isolation_source: Milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: NTU - Nanyang Technological University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: NCTR/FDA


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_submitter: Centre pasteur du Cameroun


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Clostridium faecium

ncbi_submitter: Quadram Institutte


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: CAU


ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__candidate division Zixibacteria bacterium RBG_16_43_9


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: isolated from patient

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_organism_name: Vagococcus sp.


ncbi_country: Switzerland

ncbi_isolation_source: Arterial catheter

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_country: Lithuania

ncbi_isolation_source: raw cow milk

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus sp. HMSC034G07

ncbi_submitter: The Genome Institute at Washington University


ncbi_submitter: Icahn School of Medicine at Mount Sinai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-b_bin-844

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: USA: Polk County; Oregon

ncbi_organism_name: Rathayibacter rathayi

ncbi_submitter: Oregon State University


ncbi_country: India: North Western Himalaya

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces rhizosphaerihabitans

ncbi_submitter: CSIR-Indian Institute of Integrative Medicine


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_organism_name: Micavibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Siena College


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Mariniplasma sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mycobacterium sp. 48b

ncbi_submitter: Ondokuz Mayis University, Faculty of Veterinary Medicine


ncbi_organism_name: Ruminococcaceae bacterium HV4-5-C5C

ncbi_submitter: Institut Cavanilles de Biodiversitat i Biologia Evolutiva (ICBiBE) de la Universitat de Valencia


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ110830B_bin-788

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Saudi Arabia: Thuwal; RO plant located on Red Sea

ncbi_isolation_source: biofilm from MA_RO membrane4

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Thermoanaerobacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Morton Grove; Illinois

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_assembly_name: Rumen uncultured genome hRUG901

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Pseudoalteromonas sp.


ncbi_country: USA: University of Wisconsin Hospital

ncbi_organism_name: Enterococcus faecalis EnGen0408

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rossellomorea aquimaris

ncbi_strain_identifiers: Rossellomorea aquimaris S-2

ncbi_submitter: Shandong Agricultural University


ncbi_country: South Africa

ncbi_isolation_source: Rustenburg

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Pretoria


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Changsha

ncbi_isolation_source: liver abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing genomics institute


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Japan:Hyogo; Tsuna; Kariya

ncbi_isolation_source: Carnation

ncbi_organism_name: Trinickia caryophylli

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Arcicella sp.

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Kanazawa University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus gallinarum

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Kuwait

ncbi_isolation_source: Endotracheal secretion

ncbi_organism_name: Burkholderia sp. 9779_493

ncbi_submitter: Kuwait University


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: University of Queensland


ncbi_isolate: commensal strain from anonymous patient (individual 4)

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of Oxford, Oxford, England, UK


ncbi_country: Estonia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Ethiopia: Oromia; East Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Yersinia enterocolitica


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Klebsiella pneumoniae UHKPC29

ncbi_submitter: JCVI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_organism_name: Curtobacterium sp. BRB10

ncbi_submitter: Zhejiang University


ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_organism_name: Salmonella sp. SAL04159

ncbi_submitter: Zhejiang university


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Russia

ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: New England Biolabs


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Nocardioides sp.


ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: Guangxi University


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotella nigrescens CC14M

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: China: Huaian

ncbi_isolation_source: pig slaughterhouse

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Microbacterium sp. Leaf151

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Kitasatospora misakiensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alcanivorax sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides caccae


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus W52298


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Stenotrophomonas sp. JAG2

ncbi_submitter: Tecnologico Nacional de Mexico/IT de Ursulo Galvan


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Agriculture and Forestry University; ICRISAT


ncbi_isolation_source: lake water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Sweden

ncbi_isolation_source: BAL

ncbi_organism_name: Mycobacterium tuberculosis BTB10-357


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Streptomyces lanatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii AB_909-01-7

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: Guatemala: San Miguel Petapa Mass rearing facility

ncbi_isolation_source: adult insects fed artificial diets based on hydrolized protein and sugar

ncbi_organism_name: Klebsiella sp. Kpp

ncbi_strain_identifiers: Kpp

ncbi_submitter: Universidad del Valle de Guatemala


ncbi_country: China: Yangzhou

ncbi_isolation_source: sampling staff sole swab

ncbi_organism_name: Escherichia coli


ncbi_country: USA: Lake; FL

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EBI


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: FL

ncbi_isolation_source: fecal steer

ncbi_submitter: US Food and Drug Administration


ncbi_country: Canada

ncbi_isolation_source: Secale cereale

ncbi_organism_name: Xanthomonas translucens pv. secalis

ncbi_strain_identifiers: CFBP 2539

ncbi_submitter: XTeam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. secalis

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: France: Paris

ncbi_isolation_source: infection site

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Seqomics Ltd


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: mucus

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_assembly_name: IMG-taxon 2599185352 annotated assembly

ncbi_organism_name: Sinorhizobium sp. NFACC03

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: water

ncbi_organism_name: Prochlorococcus marinus XMU1408

ncbi_submitter: Xiamen University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_country: Taiwan

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: national health research institutes


ncbi_country: Russia: Bykovsky Peninsula;Polar Fox Lagoon

ncbi_isolation_source: Polar Fox Lagoon sediment taken using 3m corer (60 mm diameter)

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_organism_name: Noviherbaspirillum sp.

ncbi_submitter: Zhejiang University


ncbi_country: Argentina

ncbi_organism_name: Corynebacterium guaraldiae

ncbi_submitter: Federal University of Bahia


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: Portugal

ncbi_isolation_source: hospital effluents

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: Universidade Catolica Portuguesa


ncbi_organism_name: Agrobacterium arsenijevicii

ncbi_strain_identifiers: NCPPB 4602

ncbi_submitter: University of Exeter


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: EMG


ncbi_organism_name: [Clostridium] leptum


ncbi_organism_name: Alistipes ihumii


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; low temperature; low CO2

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Australian Institute of Marine Science


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4571_4 depth 0-3 cm

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bdellovibrionota bacterium


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GenomeTrakr Project: Ohio Department of Agriculture | Animal Disease Diagnostic Laboratory


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hokkaido University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_isolation_source: soured carrot mash

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Roseburia sp.


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Zurich


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Jinan university


ncbi_country: Japan

ncbi_organism_name: Yersinia similis

ncbi_submitter: SC


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Trichocoleus sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Saudi Arabia: Thuwal; RO plant located on Red Sea

ncbi_isolation_source: biofilm from MB_RO membrane5

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: National University of Singapore


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: Patient

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: ROSLIN


ncbi_assembly_name: freshwater MAG --- E14_bin-2818

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: BILS


ncbi_country: Canada: British Columbia

ncbi_isolation_source: throat

ncbi_organism_name: Pseudoxanthomonas winnipegensis

ncbi_submitter: National Microbiology Laboratory


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Uppsala University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_country: Canada: Guelph

ncbi_isolation_source: Swine manure pit

ncbi_submitter: University of Guelph


ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_country: Kazakhstan: Almaty

ncbi_isolation_source: suspension

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_country: USA: Great Boiling Spring; NV

ncbi_isolation_source: Great Boiling Spring; NV

ncbi_organism_name: Thermodesulfobacterium sp. TA1

ncbi_submitter: California Sate University, San Bernardino


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limnospira sp. PMC 1238.20

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_country: India: K. J. Mahal; Khammam; Telangana

ncbi_isolation_source: root

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: IUNFC


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Ocean University of China


ncbi_country: USA: KS

ncbi_isolation_source: bovine liver abscess

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Heyndrickxia faecalis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Korea:Dae-jeon

ncbi_isolation_source: Soil

ncbi_organism_name: Cellulomonas terrae

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Australia: Lizard island

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: Wells-next-the-Sea

ncbi_strain_identifiers: Wells-next-the-Sea

ncbi_submitter: Middlesex university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Anurida maritima


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: WA; Canna

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. CA18

ncbi_submitter: Curtin University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Tenacibaculum sp.


ncbi_country: Switzerland


ncbi_country: France

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Calgary


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_country: China:loess plateau

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Science


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Rikenella microfusus

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Tsinghua University


ncbi_country: China: Chongqing

ncbi_isolation_source: secretion

ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: The First Affiliated Hospital of Chongqing Medical University


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: India: Iewduh; Shillong

ncbi_isolation_source: Retail pork

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: Ethiopia: Oromiya; Bale; Goro

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Mitsuokella sp.


ncbi_country: India: Arunachal Pradesh

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Boston; MA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M0789

ncbi_submitter: Broad Institute


ncbi_isolation_source: Hospital surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Dickeya fangzhongdai

ncbi_submitter: Guangdong Academy of Agricultural Science, P. R. China


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Germany

ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: FDA/CFSAN


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: University of Parma


ncbi_country: South Korea: Changwon

ncbi_submitter: Yonsei University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Inverness


ncbi_country: Viet Nam

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Biotechnology Centre of Ho Chi Minh city


ncbi_country: Germany: Bremen

ncbi_isolation_source: continuous bioreactor NO_5109 inoculated with denitrifying sludge is constantly fed with nitric oxide and formate

ncbi_organism_name: Acidaminobacter sp.

ncbi_submitter: Max-Planck for Marine Microbiology


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Escherichia marmotae

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck