ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Denmark: Copenhagen

ncbi_genome_representation: full

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


gtdb_representative: t

ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium sp. 1164985.4

ncbi_submitter: JCVI


ncbi_assembly_level: Scaffold

ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_genome_category: derived from metagenome

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: cattle feces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_strain_identifiers: Show KS 470-1

ncbi_submitter: United State Department of Agriculture


ncbi_isolation_source: blood

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Oxalobacteraceae bacterium GrIS 2.11

ncbi_strain_identifiers: GrIS 2.11

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: South China Agricultural University

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly


ncbi_country: Germany

ncbi_isolation_source: Surface patient room

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University Hospital Muenster


ncbi_country: Japan

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces sp. NPDC018972

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Phyllobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Netherlands Donor Feces Bank


ncbi_organism_name: Cutibacterium sp. KBN10P07757

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_country: China: Tengchong

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: uncultured Tolumonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Eubacteriales bacterium mix99

ncbi_submitter: Chengdu Biogas Institute of Ministry of Agriculture and Rural Affairs


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Borehole near Beyelii Yar in Tomsk

ncbi_isolation_source: groundwater filtered on 0.22 m filters

ncbi_organism_name: Candidatus Avelusimicrobium gallicola

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Wound swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Piscinibacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: France

ncbi_isolation_source: patient

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Paris Sud


ncbi_organism_name: Bacillus sp. PBIB1

ncbi_submitter: Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. PBIB1


ncbi_country: Peru: Lima

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Hangzhou

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Granulicatella adiacens

ncbi_refseq_category: reference genome

ncbi_submitter: US Food and Drug Administration

ncbi_type_material_designation: assembly from type material


ncbi_country: China

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_country: China: Guangdong

ncbi_isolation_source: air medium

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: Knee wound

ncbi_organism_name: Paraburkholderia fungorum

ncbi_submitter: Tropical Infectious Diseases Research and Education Centre


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Klebsiella quasivariicola

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: NY

ncbi_isolation_source: bovine cow uterus

ncbi_submitter: FDA/CFSAN


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Brevibacillus sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: China: Suzhou

ncbi_organism_name: Amphibacillus sp. MSJ-3

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Neisseria blantyrii

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: United Kingdom

ncbi_isolation_source: root from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-RE-02

ncbi_submitter: Rothamsted Research


ncbi_organism_name: Streptococcus agalactiae CJB111

ncbi_submitter: TIGR


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: France: Marseille

ncbi_isolation_source: pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IHU Mediterranee Infection


ncbi_isolation_source: Wastewater influent sample

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flammeovirgaceae bacterium UBA7330

ncbi_submitter: University of Queensland


ncbi_isolation_source: AM-anode biofilm

ncbi_organism_name: Ralstonia sp. UBA689


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: NHS Scotland

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: USA: Chicago

ncbi_isolation_source: BAL

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Bacillus paramycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Escherichia coli

ncbi_submitter: Maharshi Dayanand University, Rohtak


ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Cornell University


ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EBI


ncbi_organism_name: Acetobacter papayae JCM 25143

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Bacillus mycoides


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SurvCARE


ncbi_isolation_source: Faeces


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_country: Liechtenstein

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Morocco

ncbi_submitter: Hopital Bicetre, APHP Paris-Saclay


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_assembly_level: Chromosome

ncbi_country: Thailand: Phra Nakhon Si Ayutthaya

ncbi_isolation_source: food

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI-Shenzhen


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Rodentibacter caecimuris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Greece

ncbi_isolation_source: clinical material

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: CEITEC VFU


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-raw water

ncbi_organism_name: Syntrophus sp. (in: bacteria)

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Syntrophia;o__Syntrophales;f__Syntrophaceae;g__Syntrophus;x__unclassified Syntrophus (in: bacteria);s__Syntrophus sp. (in: bacteria)


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: South china university of technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Actinobacillus porcinus

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2690315615 annotated assembly

ncbi_organism_name: Massilia sp. CF038

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Streptomyces sp. bgisy104

ncbi_submitter: BGI Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Priestia megaterium

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: Agrobacterium sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_isolate: isolate

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Psychromonas sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Alistipes ihumii


ncbi_organism_name: bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dokdonia sp. Asnod3-C12

ncbi_submitter: Station Biologique de Roscoff


ncbi_organism_name: uncultured Limnohabitans sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Syntrophomonas sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium celatum

ncbi_submitter: EMG


ncbi_country: USA: Iowa

ncbi_isolation_source: lesion biopsy of a digital dermatitis lesion on an Iowa dairy farm

ncbi_organism_name: Treponema phagedenis 4A

ncbi_submitter: USDA-ARS


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Dialister succinatiphilus

ncbi_submitter: UIUC


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Mycobacterium canetti

ncbi_submitter: San Raffaele Scientific Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Sedimenticola;x__unclassified Sedimenticola;s__Candidatus Sedimenticola sp. (ex Thyasira tokunagai)


ncbi_country: Malaysia: Selangor

ncbi_isolation_source: Man-made lake

ncbi_organism_name: Chromobacterium violaceum

ncbi_submitter: University of Malaya


ncbi_country: Brazil: Carolina; Maranhao

ncbi_isolate: Desfum bin_10_GBBB01

ncbi_isolation_source: non-axenic (unialgal) sample in BG-11 medium

ncbi_organism_name: Hydrogenophaga sp.

ncbi_strain_identifiers: Desfum bin_10_GBBB01

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Geobacter sp.

ncbi_submitter: Radboud University


ncbi_country: Kenya

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ZZX-CZA-S

ncbi_submitter: zhejiang university


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-0949

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_submitter: Christian Medical College


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar London


ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Minnesota


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Guizhou university


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Haikou city

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Agromyces sp. LHK192

ncbi_submitter: Zhejiang University


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces sp. NPDC091201

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: intestine

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Bran-feeding group superworm feces

ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Corynebacterium bovis

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Magnetobacterium sp. LHC-1

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__Candidatus Magnetobacteriaceae;g__Candidatus Magnetobacterium;x__unclassified Candidatus Magnetobacterium;s__Candidatus Magnetobacterium sp. LHC-1


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: DOE JGI


ncbi_country: Canada: Manitoba

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_organism_name: Bacillus infantis

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_organism_name: Patiriisocius sp.

ncbi_submitter: Linnaeus University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWC1_36_108


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: KCKM 0597

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Duncaniella sp.


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2619619026 annotated assembly

ncbi_organism_name: Roseovarius tolerans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: University of Copenhagen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: EMG


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechococcus sp. GreenBA-s

ncbi_strain_identifiers: GreenBA-s

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: St. Louis; Missori

ncbi_submitter: Washington University


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_country: China: Shaanxi

ncbi_isolation_source: chicken cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Salmonella sp. YP110-1

ncbi_submitter: Yangzhou University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: nasal swab

ncbi_submitter: Servicio Antimicrobianos. INEI-ANLIS #Dr. Carlos G. Malbran"


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA138

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter higginsii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: Beijing Genome Institute


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Comamonas sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Bacillus cytotoxicus

ncbi_strain_identifiers: CVUAS 3827

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas sp. CT11-2

ncbi_submitter: North Carolina State University


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Bradyrhizobium sp. 1050_B9_N1_2

ncbi_submitter: VIB


ncbi_organism_name: Cutibacterium acnes subsp. acnes

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Rhodospirillales bacterium


ncbi_organism_name: Streptomyces mutabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC098077


ncbi_organism_name: Wolbachia endosymbiont of Folsomia candida

ncbi_submitter: Crop Reserch Institute


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- Erken-D10_bin-1051

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Clostridioides difficile DA00191

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Alachua; FL

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: NY

ncbi_isolation_source: milk

ncbi_organism_name: Escherichia sp. MOD1-EC5990

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Pakistan

ncbi_isolation_source: industrial effluent

ncbi_organism_name: Bacillus sp. MB366

ncbi_submitter: Fatima Jinnah Women University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. MB366


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Pseudomonas corrugata

ncbi_strain_identifiers: PVCT GD1

ncbi_submitter: University of Catania


ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: Jasenovac

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_country: USA: Livermore; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bartonella birtlesii E11

ncbi_submitter: URMITE


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Georgia


ncbi_isolation_source: human gut

ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: western Pacific Ocean

ncbi_isolation_source: ocean surface seawater

ncbi_organism_name: Galbibacter pacificus

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources, P.R.China


ncbi_country: USA: WA

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002069


ncbi_country: USA: New York

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Clostridium cochlearium

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Prevotellaceae bacterium


ncbi_organism_name: Candidatus Aphodousia faecalis

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Sutterellaceae;x__Sutterellaceae incertae sedis;g__Candidatus Aphodousia;s__Candidatus Aphodousia faecalis


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Shanghai MasScience Genomics Core

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_isolation_source: pig small intestine

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Nanjing Agriculture university


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Filifactor sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Russia: Astrakhan

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russia Research Anti-Plague Institute "Microbe"


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Rossellomorea marisflavi

ncbi_submitter: Ghent University


ncbi_assembly_name: Promicromonospora sp PT9

ncbi_isolate: Promicromonospora sp PT9

ncbi_organism_name: Promicromonospora panici

ncbi_strain_identifiers: Promicromonospora sp PT9


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F85414

ncbi_submitter: Broad Institute


ncbi_country: Italy

ncbi_organism_name: Liquorilactobacillus mali

ncbi_submitter: Padova university


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Caldisericia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_isolation_source: Diarrhoea

ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Malaga


ncbi_organism_name: Streptomyces pseudovenezuelae

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Guadeloupe

ncbi_isolation_source: sunken wood

ncbi_organism_name: Candidatus Thiobius zoothamnicola

ncbi_submitter: University of Vienna

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__;f__;g__Candidatus Thiobius;s__Candidatus Thiobius zoothamnicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Candidatus Thiobius;s__Candidatus Thiobius zoothamnicola


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_submitter: INRA


ncbi_isolation_source: stool

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: University of Florida


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Paludibacter sp.

ncbi_submitter: University of Iowa


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-355-N16

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: IMG-taxon 2690315647 annotated assembly

ncbi_organism_name: Variovorax sp. YR216

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolate: Marinobacter sp. N1

ncbi_organism_name: Marinobacter salarius

ncbi_strain_identifiers: Marinobacter sp. N1

ncbi_submitter: Elham Karimi


ncbi_country: Bangladesh

ncbi_isolation_source: soil

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Edwardsbacteria bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Edwardsiibacteriota;x__unclassified Candidatus Edwardsbacteria;s__Candidatus Edwardsbacteria bacterium


ncbi_country: Australia

ncbi_isolation_source: environmental

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_submitter: Southwest University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Citrobacter sp. FDAARGOS_156

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Distal colon


ncbi_organism_name: Ectopseudomonas oleovorans

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: China: Jiangsu

ncbi_isolation_source: chicken

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou univeristy


ncbi_organism_name: Weizmannia acidilactici

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA166

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: China

ncbi_isolation_source: Respiratory swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Poland: industrial site in southern Poland; Malopolska

ncbi_isolation_source: soil contaminated with arsenic

ncbi_organism_name: Paeniglutamicibacter sulfureus

ncbi_submitter: Jagiellonian University in Krakow


ncbi_organism_name: Hyphomicrobium zavarzinii


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Liangcheng

ncbi_isolation_source: desert soil

ncbi_organism_name: Aquincola tertiaricarbonis

ncbi_submitter: Inner Mongolia agricultural university, college of life science


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas imrae

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Enterobacter cloacae complex sp.6701062

ncbi_submitter: Tel Aviv Sourasky Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp.6701062


ncbi_organism_name: Hanamia sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC060243

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC056713


ncbi_organism_name: Segatella copri


ncbi_organism_name: Corynebacterium halotolerans

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_organism_name: Streptomyces sp. NPDC057743


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: hydrothermal vent

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: Rumen uncultured genome RUG13523

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_submitter: Swansea University


ncbi_country: Switzerland: Stansstaad; Zurih

ncbi_isolate: ZEHNDER 1965/U140

ncbi_isolation_source: wet stone wall

ncbi_organism_name: Tildeniella nuda ZEHNDER 1965/U140

ncbi_submitter: University of California, Riverside


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: University of Technology, Sydney


ncbi_country: Turkey: Hatay

ncbi_isolation_source: Retail milk

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: HMKU-VET

ncbi_submitter: Hatay Mustafa Kemal University, Faculty of Veterinary Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kampala International University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Alistipes putredinis CAG:67

ncbi_submitter: DTU


ncbi_country: Ireland: Dublin

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Trinity College Dublin


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dialister sp. CAG:357


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: California

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China: Weihai

ncbi_isolation_source: sediment

ncbi_organism_name: Maritimibacter sp. 55A14

ncbi_submitter: Shandong University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Russia

ncbi_isolation_source: spleen

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hangzhou Medical College


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-052-05_S3_C1

ncbi_submitter: IGS


ncbi_organism_name: Croceibacter atlanticus

ncbi_submitter: New York University Abu Dhabi


ncbi_country: Italy: Vercelli

ncbi_isolation_source: paddy soil amended with rice straw

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: India:Himachal Pradesh

ncbi_isolation_source: High altitude soil

ncbi_organism_name: Paenibacillus sp. PCH8

ncbi_submitter: CSIR-IHBT PALAMPUR


ncbi_country: New Zealand: Nelson Marlborough

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_isolation_source: freshwater

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease swab

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 292


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus DAR104

ncbi_submitter: Broad Institute


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: lake water

ncbi_organism_name: Oligoflexales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_country: China: Wenzhou

ncbi_isolation_source: Pus

ncbi_submitter: wenzhou medical university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Zurich


ncbi_country: USA: Wiser Lake; Washington

ncbi_isolation_source: cyanobacterial bloom in freshwater lake

ncbi_organism_name: Ideonella sp. WA131b

ncbi_submitter: Oregon State University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Mycetohabitans endofungorum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Agathobaculum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium


ncbi_country: China: Jiangsu

ncbi_isolation_source: kidney

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Pacific Ocean: Juan de Fuca Ridge

ncbi_isolation_source: gill tissue

ncbi_organism_name: Candidatus Ruthia endofausta

ncbi_submitter: University of California Santa Cruz

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__;f__Candidatus Pseudothioglobaceae;g__Candidatus Ruthturnera;s__Candidatus Ruthia endofausta

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Ruthturnera;s__Candidatus Ruthia endofausta


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: bronchial alveolar lavage

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacteroides;s__Mycobacteroides abscessus;sb__Mycobacteroides abscessus subsp. bolletii;x__Mycobacteroides abscessus subsp. bolletii 1S-151-0930


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal University of Sao Paulo


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Bangladesh

ncbi_isolation_source: stool sample from a patient with cholera

ncbi_organism_name: Vibrio cholerae 4260B

ncbi_submitter: International Vaccine Institute


ncbi_submitter: University of California at Davis


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: Decomposing penguin feathers

ncbi_organism_name: Lysobacter sp. A03

ncbi_submitter: UFRGS


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Moscow;x__Salmonella enterica subsp. enterica serovar Moscow str. S-1843


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Corynebacterium variabile

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Isangi


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Paraprevotella clara


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Actinomyces slackii

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Bacteroides intestinalis


ncbi_submitter: University of Sheffield


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_submitter: University of Bern


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Pittsburgh


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field Eastern mound

ncbi_isolation_source: biosyringe of gray deposit below active venting hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Bergen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Chloroflexales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_organism_name: uncultured Kiritimatiellota bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Kiritimatiellota;x__environmental samples;s__uncultured Kiritimatiellota bacterium


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: RIKEN-BRC


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Terracidiphilus sp.


ncbi_organism_name: Stomatobaculum longum

ncbi_submitter: EMG


ncbi_organism_name: Ralstonia sp. 22111

ncbi_submitter: Yantai University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Eawag


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_submitter: Center for Microbial Communities


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Parvibaculum lavamentivorans

ncbi_submitter: University of South Africa


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Sulfitobacter sediminilitoris

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: [Pasteurella] aerogenes

ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;x__Pasteurellaceae incertae sedis;x__[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex;s__[Pasteurella] aerogenes


ncbi_organism_name: Streptomyces sp. NPDC014344

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Candidatus Midichloria sp.

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Midichloria;x__unclassified Candidatus Midichloria;s__Candidatus Midichloria sp.


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: lung abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MIT


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Flavobacteria bacterium GWA2_35_26

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;x__unclassified Flavobacteriia;s__Flavobacteria bacterium GWA2_35_26


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse (Mus musculus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: United Kingdom: Addenbrooke s hospital

ncbi_isolation_source: HHC fecal sample

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: San Diego State University


ncbi_country: China: Henan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Desulfitobacteriia bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;c__Desulfitobacteriia;x__unclassified Desulfitobacteriia;s__Desulfitobacteriia bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Bacillus sp. UMB0899

ncbi_submitter: Loyola University Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. UMB0899


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Clostridioides difficile F249

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_submitter: WRAIR-Africa


ncbi_country: Mexico

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: IMG-taxon 2663762772 annotated assembly

ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Caecum


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: South Africa: King Dinuzulu Hospital

ncbi_isolation_source: sputum

ncbi_submitter: Broad Institute


ncbi_isolate: metabat2_XCR1_HOM_7857_bwa.152 MAG

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_strain_identifiers: metabat2_XCR1_HOM_7857_bwa.152 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Clostridium celatum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Licking County; Ohio

ncbi_isolation_source: groundwater well

ncbi_organism_name: Parcubacteria group bacterium LiPW_30

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium LiPW_30


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Segatella copri

ncbi_submitter: BGI


ncbi_country: United Kingdom: Birmingham

ncbi_organism_name: Mycobacterium marinum E11

ncbi_submitter: University of Birmingham


ncbi_country: China: Sichuan

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Providencia stuartii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: Boston; MA; USA

ncbi_organism_name: Staphylococcus aureus M1231


ncbi_country: Italy: Lombardy

ncbi_isolation_source: sputum from an Italian patient suffering from broncho-pneumonitis

ncbi_organism_name: Mycolicibacter longobardus

ncbi_submitter: Uppsala University


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-449-O05

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Peru

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_country: India: Kerala

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Health Research Institutes


ncbi_isolation_source: marine

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Turkey: Bolu

ncbi_isolation_source: lake sediment

ncbi_organism_name: Streptomyces ureilyticus

ncbi_submitter: Ondokuz Mayis University


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: India: Hyderabad

ncbi_isolation_source: cecum

ncbi_organism_name: Helicobacter pullorum

ncbi_submitter: University of Hyderabad


ncbi_isolate: Pseudomonas sp. Irchel s3a18

ncbi_organism_name: Pseudomonas sp. Irchel s3a18

ncbi_strain_identifiers: Pseudomonas sp. Irchel s3a18

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: University of California, Berkeley


ncbi_submitter: University Hospital of Antwerp


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteroidales bacterium UBA6267

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6267


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: Rumen uncultured genome RUG11401

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Kuwait

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kuwait University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Comamonas guangdongensis

ncbi_strain_identifiers: CCTCC AB2011133

ncbi_submitter: Hohai University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Comenius University Science Park


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Soil

ncbi_organism_name: Pseudomonas sp. 8 R 14

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__unclassified Pseudomonas;s__Pseudomonas sp. 8 R 14


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Kenya

ncbi_isolation_source: Steinernema-infected Galleria mellonella cadaver

ncbi_organism_name: Pseudomonas piscis

ncbi_submitter: Elakistos Biosciences


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: USA: Michigan

ncbi_isolation_source: Residence cold water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolation_source: human gut

ncbi_organism_name: Desulfovibrio piger


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Lund University


ncbi_country: Italy

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 1360

ncbi_submitter: Brigham Young University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_country: China: Chengdu

ncbi_isolation_source: westalted hides

ncbi_organism_name: Ornithinibacillus caprae

ncbi_submitter: Sichuan University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Georgia


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;x__Bacillus subtilis KCTC 1028 = ATCC 6051a


ncbi_country: Thailand: Lampang

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Faculty of Public Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: Denmark

ncbi_isolation_source: Infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Statens Serum Institut


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas sp. 18083202

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: China: Yellow Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter sp. QD34_24

ncbi_submitter: Shantou University


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Dehalococcoidia bacterium UBA2979

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_organism_name: Zhouia sp. PK063

ncbi_submitter: Shandong University


ncbi_country: Israel: Negev Desert

ncbi_isolate: NEG bin7

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: NEG bin7

ncbi_submitter: Monash University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: INRA


ncbi_assembly_name: freshwater MAG --- Umea_bin-06116

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Portugal: Porto

ncbi_isolation_source: hospital surface

ncbi_organism_name: Acinetobacter pittii

ncbi_strain_identifiers: CEB-Ap

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Canada: Prince Edward Island

ncbi_isolation_source: Imported/domestic retail Mussels

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: EMG


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Prevotellaceae bacterium UBA4315

ncbi_submitter: University of Queensland


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0119

ncbi_submitter: Broad Institute


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Acutalibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: New York

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli O25b:H4

ncbi_submitter: Public Health Agency of Sweden


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides ovatus


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: Canada: Vancouver

ncbi_isolation_source: stool of a ~10 day-old infant on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_country: France: Seine river; Paris

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Sorbonne University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient10 sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People Hospital


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Brazil:Rio Grande do Sul; Porto Alegre

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Granulicella mallensis MP5ACTX8

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Stellaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_organism_name: Escherichia coli WV_060327

ncbi_submitter: Virginia Bioinformatics Institute


ncbi_country: India

ncbi_submitter: Christian Medical College


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_submitter: Washington University in St. Louis


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_submitter: WRAIR-Africa


ncbi_organism_name: uncultured Pantoea sp.

ncbi_submitter: EMG


ncbi_country: South Korea: Han river

ncbi_organism_name: Methylobacterium sp. SyP6R

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: dairy product

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Bioprox


ncbi_country: Japan

ncbi_isolation_source: catheter urine


ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: Tongji University


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-0080

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Korea: Sacheon Bay

ncbi_organism_name: Paenibacillus sacheonensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Baltimore

ncbi_isolation_source: patient fluids

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Johns Hopkins University


ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: rat gut

ncbi_organism_name: Sutterellaceae bacterium UBA3322

ncbi_submitter: University of Queensland


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Bartonella sp.

ncbi_submitter: EMG


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: the intestinal contents of Marmot

ncbi_organism_name: Cellulomonas chengniuliangii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Waterloo


ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: GNS Science


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_submitter: The University of Sydney


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Leifsonia soli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Respiratory tract secretions

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Streptomyces erythrochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 214

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Unidad de Genomica y Bioinformatica


ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Streptomyces sp. NPDC003720


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Salmonella sp. SJTUF15578

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA6498

ncbi_submitter: University of Queensland


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA4380


ncbi_organism_name: Candidatus Neomicrothrix sp.

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: EMG


ncbi_country: Kenya

ncbi_organism_name: Bacteroidales bacterium UBA7591

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA7591


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chryseobacterium sp.


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 483

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_country: Italy: Bay of Fetovaia; Elba

ncbi_isolation_source: gill tissue of clam

ncbi_organism_name: Candidatus Thiodiazotropha endoloripes

ncbi_submitter: University of Vienna


ncbi_organism_name: Romboutsia ilealis


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Streptomyces filipinensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium