ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium CG11_big_fil_rev_8_21_14_0_20_48_46


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Chromosome

ncbi_country: Indonesia

ncbi_genome_representation: full

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_assembly_level: Scaffold

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_assembly_level: Contig

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


gtdb_representative: t

ncbi_country: USA

ncbi_isolation_source: active layer of soil

ncbi_organism_name: Domibacillus tundrae

ncbi_refseq_category: reference genome

ncbi_submitter: Korea Polar Research Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: Germany: Freising

ncbi_isolation_source: meat

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China: Tianjin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Disease


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC052494

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Changzhou;Jiangsu

ncbi_isolation_source: Aerobic activated sludge

ncbi_organism_name: Nitrosomonas communis

ncbi_submitter: South China University of Technology


ncbi_country: Brazil: City of Uberlandia; State of Minas Gerais

ncbi_isolation_source: rectal swab isolate from a 57-year-old man

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptomyces sp. NBC_01795

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. SSDFZ69

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Romania

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Beijing institute of biotechnology


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Cornell University


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas plecoglossicida

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ GmbH


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-34

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Planctomycetia bacterium

ncbi_strain_identifiers: new MAG-34

ncbi_submitter: Micoorganism


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Argentina: Tucuman

ncbi_isolation_source: feces from children

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Centro de Referencia para Lactobacilos (CERELA-CONICET)


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Allobaculum sp.


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Inha University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shandong First Medical University


ncbi_organism_name: Proteus sp. G2300

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2300


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Lachnospiraceae bacterium 64-25

ncbi_submitter: Nanjing University


ncbi_isolate: new MAG-173

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_strain_identifiers: new MAG-173


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3217-1

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Estuary water environment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Tianjin Institute of Environmental and Occupation Medicine


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human skin

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_organism_name: Streptomyces thermoviolaceus subsp. thermoviolaceus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterococcus sp. C43

ncbi_submitter: Northwest A & F University


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: epilithon

ncbi_organism_name: Pseudomonas avellanae

ncbi_submitter: University of Arizona


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Guangzhou Medical University


ncbi_isolation_source: bioreactor

ncbi_organism_name: Bacteroidales bacterium UBA5548

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5548


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Porphyromonadaceae bacterium UBA7289


ncbi_country: Brazil

ncbi_isolation_source: feces (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Johns Hopkins Bloomberg School of Public Health


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Jeotgalicoccus aerolatus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_organism_name: uncultured Alcanivorax sp.

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- MJ110802A_bin-624

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_isolation_source: daily product not specified

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bredeney


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: University of Chicago


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Cornell University


ncbi_isolate: Lactobacillus mudanjiangensis AMBF197

ncbi_isolation_source: Spontaneous fermented carrot juice

ncbi_organism_name: Lactiplantibacillus mudanjiangensis

ncbi_strain_identifiers: Lactobacillus mudanjiangensis AMBF197

ncbi_submitter: UANTW


ncbi_submitter: Medical Mycology Research Center


ncbi_assembly_name: freshwater MAG --- Day2-2_bin-240

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC017248

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Spirillospora sp. NPDC077959


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: University Hospital Center and University of Lausanne


ncbi_organism_name: Streptomyces asiaticus

ncbi_submitter: Leibniz Institute DSMZ German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany


ncbi_organism_name: Streptomyces sp. NPDC087532


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


gtdb_type_species_of_genus: t

ncbi_organism_name: Helcobacillus massiliensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: IMG-taxon 2639762616 annotated assembly

ncbi_organism_name: Nocardioides exalbidus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Pakistan

ncbi_isolation_source: Barberry bark

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Hadar

ncbi_submitter: U.S. Food and Drug Administration


ncbi_isolation_source: urine

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Caecum


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas syringae Cit 7

ncbi_strain_identifiers: Cit 7

ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae Cit 7


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0001

ncbi_submitter: Broad Institute


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: Australia: Boho South; VIC

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zymo Research Corporation


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium GW2011_GWA1_38_8


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Brown University


ncbi_country: Japan: Okinawa

ncbi_isolation_source: Napier grass

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: The National Agriculture and Food Research Organization


ncbi_country: Russia: South Urals; near Lake Karachai

ncbi_isolation_source: Groundwater near Lake Karachai (Russia)

ncbi_organism_name: Pollutimonas subterranea

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: University of Guelph


ncbi_isolation_source: Soil

ncbi_organism_name: Pandoraea terrae

ncbi_submitter: LM-UGent


ncbi_organism_name: uncultured Marinilabiliaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Leptospirales bacterium

ncbi_submitter: University of Auckland


ncbi_organism_name: Tardiphaga sp.

ncbi_submitter: Zhejiang University


ncbi_country: Paraguay: Coronel Oviedo

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Epulonipiscium sp.

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Epulonipiscium;x__unclassified Candidatus Epulonipiscium;s__Candidatus Epulonipiscium sp.


ncbi_organism_name: Methylocystis sp.


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 52

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Paenibacillus alvei

ncbi_strain_identifiers: NRRL NRS-750

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: IMG-taxon 2636416187 annotated assembly

ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Broiler parent88

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: France

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris Sud


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Thiotrichaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Paenirhodobacter sp. MME-103

ncbi_submitter: Incheon National University


ncbi_organism_name: Mycoavidus cysteinexigens


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Thailand: Ubon; Trakam

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_assembly_name: WTassembly

ncbi_isolate: WT

ncbi_isolation_source: Urban environment

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: WT

ncbi_submitter: pilajr lopez-hernandez


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Drainage of fluid

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Laos

ncbi_isolation_source: chicken stool

ncbi_submitter: University of Bern


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus australis

ncbi_submitter: Clemson University


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Neptuniibacter sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_isolation_source: chronic cutaneous abcess associated with osteitis; 05/06

ncbi_organism_name: Mycolicibacterium setense

ncbi_submitter: IMPPC (Institute of Predictive and Personalized Medicine of Cancer )


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Switzerland

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_submitter: University of Guelph


ncbi_submitter: Long Island University


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 352

ncbi_submitter: SC


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Armatimonadetes bacterium UBA5419

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__unclassified Armatimonadota;s__Armatimonadetes bacterium UBA5419


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Semmelweis University


ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Schaalia naturae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__environmental samples;s__uncultured candidatus Brocadiaceae bacterium


ncbi_organism_name: Thalassovita sp.


ncbi_organism_name: Rathayibacter sp. KR2-224

ncbi_submitter: Kyonggi university


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Segatella copri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Brasilia


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL110PA1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: oral swab

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: King's College London


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Filifactor sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: France: Guebwiller; Alsace

ncbi_organism_name: Borreliella burgdorferi IPT137

ncbi_submitter: Animal Epidemiology Unit - INRA - Saint Genès Champanelle; CNR Borrelia - Pasteur Institute - Paris


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Groin abscess

ncbi_organism_name: Pseudomonas aeruginosa BWHPSA009

ncbi_submitter: Broad Institute


ncbi_country: Hong Kong

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Bangladesh

ncbi_isolation_source: marine sponge

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Caltech


ncbi_organism_name: Variovorax boronicumulans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France: Limoges

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Paris Sud


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Pau University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The University of Queensland


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Sphingomonas melonis

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Quanzhou bay

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Draconibacterium mangrovi

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: Nanjing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Medical School of Nanjing University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_country: Atlantic Ocean

ncbi_isolation_source: skin

ncbi_organism_name: Pseudoalteromonas sp. APC 3694

ncbi_submitter: University College Cork


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pontibacter sp. 13R65

ncbi_submitter: Xinjiang Academy of Agricultural Sciences


ncbi_organism_name: Thalassoglobus sp. JC818

ncbi_submitter: JNTUH


ncbi_organism_name: Staphylococcus epidermidis VCU120

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Enterobacter cloacae complex sp. P18RS

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P18RS


ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 13

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Segatella buccae

ncbi_submitter: EMG


ncbi_country: Spain: Almeria

ncbi_isolation_source: bentonite clay formations

ncbi_organism_name: Stenotrophomonas sp. BIIR7

ncbi_submitter: University of Granada


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Shandong

ncbi_isolation_source: water

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Chandigarh

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Quebec

ncbi_isolation_source: feces

ncbi_submitter: Government of Canada


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Queensland

ncbi_isolation_source: Skin lesion swab

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: The University of Queensland


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France: Lille

ncbi_isolation_source: trachea

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Russia: Kazan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kazan Federal University


ncbi_country: USA: Colorado

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Brevibacterium linens

ncbi_submitter: National Food Institute


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Monash University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Photobacterium damselae

ncbi_submitter: Jiangsu Institute of Oceanology and Marine Fisheries


ncbi_organism_name: Gaiella sp.


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Kiritimatiellota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Urechidicola sp.

ncbi_submitter: University of East Anglia


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-253

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhizobium sp. BK602

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: MT Vernon; GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-0088

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: India: Salim Ali Bird Sanctuary; Goa

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Bacillaceae bacterium SAS-127

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Cyanobacteria bacterium J06642_2

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06642_2


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae


ncbi_country: Sweden: Bothnian Sea

ncbi_isolation_source: Bothnian Sea site NB8 sediments 37-42 cm depth; used to inoculate methane- and iron-fed bioreactor (T0); bioreactor biomass 16 months after reactor inoculation (T1); and 29 months after reactor inoculation (T2)

ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: MN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Lelliottia amnigena

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_country: United Kingdom:Preston

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Marinomonas rhizomae

ncbi_strain_identifiers: CECT 7377

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangdong

ncbi_isolation_source: air medium

ncbi_submitter: South China Agricultural University


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Synechococcus sp. KORDI-100

ncbi_strain_identifiers: KORDI 100

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_country: Italy: Bresso; MI

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: University of Vienna


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Paenibacillus sp. FSL M7-0831

ncbi_submitter: Penn State


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Nigeria

ncbi_isolation_source: blood


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 134 (4-6073441)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 134 (4-6073441)


ncbi_country: USA

ncbi_isolation_source: porcine

ncbi_submitter: University of Guelph


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Microbacterium laevaniformans

ncbi_submitter: University of Toronto


ncbi_organism_name: Stellaceae bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: WTSI


ncbi_assembly_name: freshwater MAG --- KT_bin-1681

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Escherichia coli

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin S7.51

ncbi_isolation_source: groundwater

ncbi_organism_name: Brevundimonas sp.

ncbi_strain_identifiers: bin S7.51

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Kocuria flava

ncbi_submitter: Council of Scientific and Industrial Research-National Institute of Oceanography


ncbi_organism_name: uncultured Candidatus Brevefilum sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Brevifilum;x__environmental samples;s__uncultured Candidatus Brevefilum sp.


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Escherichia sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: India: Guwahati; Assam

ncbi_isolation_source: Sock

ncbi_organism_name: Salmonella enterica

ncbi_submitter: International Livestock Research Institute


ncbi_country: Italy: Trento; Comano Thermal Spring

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Phycisphaera mikurensis

ncbi_submitter: University of Trento


ncbi_country: Italy

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University Sultan Zainal Abidin


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Universite de Limoges


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: India

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter lari

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Central Texas Vetrans Healthcare system


ncbi_country: Turkey: Ankara

ncbi_isolation_source: cheese

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Baskent University


ncbi_organism_name: Treponema porcinum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SHENZHEN CHILDREN'S HOSPITAL


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Sweden

ncbi_isolation_source: prostatic tissue

ncbi_organism_name: Cutibacterium acnes subsp. acnes

ncbi_submitter: Aarhus University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Syntrophaceae bacterium UBA4065


ncbi_organism_name: Lactobacillus helveticus DPC 4571

ncbi_submitter: Teagasc, Moorepark Food Research Centre


ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wadsworth Center - NYS DOH


ncbi_country: China: Shenzhen

ncbi_isolation_source: urinary tract

ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Guangdong Medical University


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter antioxidans

ncbi_submitter: Northwest Institute of Eco-Environment and Resources Chinese Academy of Sciences


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: ND

ncbi_isolation_source: feces mink mustelidae

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: PA

ncbi_isolation_source: porcine pleural cavity


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces


ncbi_organism_name: Holdemanella biformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_country: USA: Wisconsin

ncbi_isolation_source: leaf

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Regina


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Aeribacillus composti

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptomyces clavifer

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dialister invisus


ncbi_organism_name: Streptomyces rimosus


ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Methylomonas sp. 2B

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Houston Methodist


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Polymorphobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: SponGES


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Candidatus Nitrosopelagicus sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Archaea;x__Thermoproteati;p__Nitrososphaerota;x__Nitrososphaerota incertae sedis;g__Candidatus Nitrosopelagicus;x__unclassified Candidatus Nitrosopelagicus;s__Candidatus Nitrosopelagicus sp.


ncbi_assembly_name: Rumen uncultured genome RUG11515

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: China: HaiNan

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus sp. NLN64

ncbi_submitter: Hainan Medical University-University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: Wound

ncbi_submitter: SC


ncbi_country: South Africa: KwaZulu-Natal

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: USA

ncbi_isolation_source: Alpine soil

ncbi_organism_name: Deinococcus alpinitundrae

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Zymomonas mobilis

ncbi_submitter: Teagasc


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_isolation_source: anammox granule sludge

ncbi_organism_name: Candidatus Jettenia sp. CY-1

ncbi_submitter: Chongqing university

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Jettenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Jettenia;x__unclassified Candidatus Jettenia;s__Candidatus Jettenia sp. CY-1


ncbi_isolation_source: marine

ncbi_organism_name: Citreicella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FIOCRUZ


ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: lake water

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 266

ncbi_submitter: SC


ncbi_country: South Korea: Seoul

ncbi_isolation_source: nasophraynx

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chungbuk National University Hospital


ncbi_organism_name: Salaquimonas sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Yersinia aleksiciae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: SiuDiyapB

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_organism_name: Streptomyces sp. NBC_00822

ncbi_submitter: Technical University of Denmark


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Texas Panhandle

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas Tech University


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 1-110-08_S3_C2

ncbi_submitter: IGS


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: bioMerieux


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nocardioides sp.


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D10_bin-0228

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Campylobacter jejuni


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_submitter: Swansea University


ncbi_isolation_source: Industrial ABE fermentation

ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: LanzaTech Inc


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin78

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: KAP bin78

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: sewage


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Coprococcus comes

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Ireland

ncbi_isolation_source: Cattle/Water

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Candidatus Scybalenecus merdavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Scybalenecus;s__Candidatus Scybalenecus merdavium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: choanal swab

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universidade Federal de Sao paulo


ncbi_organism_name: uncultured Psychroserpens sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Caldifermentibacillus hisashii

ncbi_submitter: Penn State


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Coleofasciculus sp. FACHB-129

ncbi_submitter: South China Normal University


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Africa

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_assembly_name: Salmonella enterica CVM N44701-R v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Marilutibacter maris

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: Leyella stercorea

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Enterobacter asburiae

ncbi_strain_identifiers: FDAARGOS 1432

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Switzerland

ncbi_isolation_source: chicken cecum

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: ETH Zurich


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Loosdrechtia sp.

ncbi_submitter: Suzhou University of Science and Technology

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Loosdrechtia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Loosdrechtia;x__unclassified Candidatus Loosdrechtia;s__Candidatus Loosdrechtia sp.


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_organism_name: Galactobacter valiniphilus

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Alistipes avistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Eubacterium sp. Marseille-QA0814

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: EMG


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: Malaysia: Gua Tempurung; Perak

ncbi_isolation_source: soil sample

ncbi_organism_name: Jeongeupia sp. USM3

ncbi_submitter: Universiti Sains Malaysia


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhodoferax sp. OV413

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Taiwan

ncbi_submitter: national health research institutes


ncbi_country: Germany

ncbi_isolation_source: blood

ncbi_organism_name: Bacillus anthracis str. UR-1

ncbi_submitter: Bundeswehr Institute of Microbiology, Munich, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. UR-1


ncbi_country: Canada: Alberta

ncbi_isolation_source: Lung tissue

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VIDO Inter-Vac, University of Saskatchewan


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Van Yuzuncu Yil University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: Escherichia coli

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: Pacific Ocean

ncbi_isolation_source: rock

ncbi_organism_name: Sphingomonas sanguinis

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Pseudobutyrivibrio sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Sichuan University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Faecalimonas sp.

ncbi_submitter: University of California, Davis


ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Sweden: Gullmar Fjord

ncbi_isolation_source: hypoxic fjord sediment

ncbi_organism_name: Pseudoalteromonas sp.

ncbi_submitter: Kiel University


ncbi_country: China

ncbi_isolation_source: feces; evolved day8-3

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: USA

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Russia: Kamchatka

ncbi_isolation_source: frozen volcanic ash

ncbi_organism_name: Gordoniibacillus kamchatkensis

ncbi_submitter: Kingston University


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: seawater and sand

ncbi_organism_name: Mycolicibacterium arenosum

ncbi_submitter: Chung-Ang University


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: France

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Mediterranea massiliensis


ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_country: Greece: Krinides; Kavala

ncbi_isolation_source: Geothermal spring

ncbi_organism_name: Kurthia sp. 11kri321

ncbi_submitter: Los Alamos National Laboratory


ncbi_submitter: University of Oslo


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont of Drosophila simulans;x__Wolbachia endosymbiont of Drosophila simulans wAu


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1552865

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterocloster clostridioformis


ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Parasphingopyxis lamellibrachiae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China: Guangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ST11 CRKP02

ncbi_submitter: PLA Southern Theater General Hospital


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella aerogenes


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus HOAG6054

ncbi_submitter: Broad Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Ireland

ncbi_isolation_source: broiler caeca

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_isolation_source: Sludge

ncbi_organism_name: Cupriavidus pinatubonensis

ncbi_submitter: LM-UGent


ncbi_organism_name: Escherichia coli

ncbi_submitter: Duke University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: China: Jiangxi

ncbi_submitter: China Agricultural University


ncbi_country: USA: CT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Switzerland

ncbi_isolation_source: fruit powder

ncbi_organism_name: Franconibacter helveticus 1159

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Radboud University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: Germany

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: South Korea: Jinju

ncbi_isolation_source: Vaginal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_isolate: SERmali

ncbi_organism_name: Serratia sp. (in: enterobacteria)

ncbi_strain_identifiers: SERmali

ncbi_submitter: Free University of Bozen-Bolzano

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. (in: enterobacteria)


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Terrisporobacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Anaerovoracaceae bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Actinomycetes bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG11

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: USA: California

ncbi_isolation_source: bulk soil

ncbi_organism_name: Bradyrhizobium sp. CW7

ncbi_submitter: Oregon State University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_organism_name: Clostridium sp. AF15-17LB

ncbi_submitter: BGI


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Comoros

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: Russia

ncbi_isolation_source: milk from female

ncbi_organism_name: Limosilactobacillus fermentum 3872

ncbi_submitter: Kingston University


ncbi_isolation_source: marine

ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Australia: Clermont; QLD

ncbi_isolation_source: feces


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Pseudoflavonifractor sp.


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Kerstersia gyiorum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Marinovum sp.


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Universidad El Bosque


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Schekmaniibacteriota;s__Candidatus Schekmanbacteria bacterium RIFCSPHIGHO2_02_FULL_38_11


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France: Marseille

ncbi_isolation_source: skin

ncbi_organism_name: Sporosarcina sp. Marseille-Q4063

ncbi_submitter: IHU - Mediterannee Infection


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Nannocystis exedens

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo AC


ncbi_country: USA: Tucson; AZ

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_organism_name: Lactobacillus nasalidis

ncbi_submitter: Chubu University Academy of Emerging Sciences


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: human stool

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Varibaculum sp.


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bacillus licheniformis LMG 17339

ncbi_submitter: University of Ghent

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus licheniformis;x__Bacillus licheniformis LMG 17339


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. LN325

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Colombia: Valle del Cauca

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_organism_name: Candidatus Egerieisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Egerieisoma;x__unclassified Candidatus Egerieisoma;s__Candidatus Egerieisoma sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Alberta


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The first affiliated hospital of zhejiang university


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: 2nd Faculty of Medicine and Motol University Hospital


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Chicago


ncbi_submitter: FSC VIEV

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli DEC11E

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M68475

ncbi_submitter: Broad Institute


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: New York City

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Troyes

ncbi_isolation_source: bronchitis secretion from patient in hospital

ncbi_organism_name: Corynebacterium ulcerans FRC58

ncbi_submitter: Federal University of Para


ncbi_submitter: University of Veterinary Medicine Budapest