ncbi_country: South Africa

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Mesorhizobium sp. WSM3626

ncbi_submitter: DOE Joint Genome Institute


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: China: South China Sea

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Synechococcus sp. YX04-3 co-culture from sea water

ncbi_organism_name: Oricola sp.

ncbi_submitter: Synechococcus sp. YX04-3


ncbi_assembly_level: Scaffold

ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB10-472

ncbi_submitter: Broad Institute


gtdb_representative: t

ncbi_country: Tunisia: near Gabes

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium sp. sGM-13

ncbi_submitter: Universite Paris Saclay / CNRS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Clostridium beijerinckii


ncbi_country: USA: IN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Korea National Institute of Health


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_country: USA: Durham; NC

ncbi_isolation_source: urine; indwelling cath

ncbi_submitter: University of Alabama in Huntsville


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Agitococcus sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_country: USA: Lake Michigan

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Chicago


ncbi_country: Japan: Horonobe URL

ncbi_submitter: UC Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Japan

ncbi_isolation_source: chitin

ncbi_organism_name: Paenibacillus chitinolyticus

ncbi_refseq_category: reference genome

ncbi_submitter: Kyungpook National University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Great Salt Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Halanaerobiales bacterium

ncbi_submitter: University of Utah


ncbi_country: South Korea:Seoamcheon stream

ncbi_isolation_source: freshwater environment

ncbi_organism_name: Flavobacterium eburneipallidum

ncbi_submitter: Inha Univ.


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: Streptomyces sp. NPDC042319

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Sulfurospirillum sp.


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Blackburniibacteriota;s__Candidatus Blackburnbacteria bacterium RIFCSPHIGHO2_01_FULL_43_15b


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: China: Jiangsu

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Jiangsu Huaiyin Institute of Technology


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Manitoba


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Turkey: Mersin

ncbi_isolation_source: Orchard

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: USA: FL

ncbi_isolation_source: urine (Canis lupus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_assembly_name: Paraburkholderia phymatum LMG 21445

ncbi_isolation_source: Environmental; Machaerium lunatum root nodule

ncbi_organism_name: Paraburkholderia phymatum STM815

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Flavobacteriaceae bacterium LMIT009

ncbi_submitter: Shantou University


ncbi_organism_name: Acidocella sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


gtdb_type_species_of_genus: t

ncbi_organism_name: Coralloluteibacterium stylophorae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Calgary


ncbi_country: China: Dashan Tin-Zinc Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Brazil

ncbi_isolation_source: rectal swab

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3152-1

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_country: China: Chongqing

ncbi_submitter: China Aricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Australia: Adelaide

ncbi_isolation_source: Patient Sinus Swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Capnocytophaga granulosa

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: shower drain

ncbi_organism_name: Enterobacter soli

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Candidatus Sumerlaeia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;c__Candidatus Sumerlaeia;x__unclassified Candidatus Sumerlaeia;s__Candidatus Sumerlaeia bacterium


ncbi_assembly_name: Paraburkholderia kururiensis LMG 19447

ncbi_isolation_source: Environmental; aquifier

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia;s__Paraburkholderia kururiensis;x__Paraburkholderia kururiensis JCM 10599 = LMG 19447


ncbi_country: USA: Alaska; Fairbanks

ncbi_organism_name: Pseudomonas sp. TH37

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 189 (4-3220125)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 189 (4-3220125)


ncbi_country: Ireland

ncbi_isolation_source: grass

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Teagasc


ncbi_country: South Korea: Cheonan

ncbi_isolation_source: young radish kimchi

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Probiotics Microbiome Convergence Center


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnospiraceae bacterium UBA2731

ncbi_submitter: University of Queensland


ncbi_isolation_source: nodules

ncbi_organism_name: Bradyrhizobium japonicum

ncbi_submitter: Embrapa Soja


ncbi_country: USA: Cambridge; Massachusetts

ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter sp. MIT 21-1697

ncbi_submitter: MIT


ncbi_assembly_name: Rumen uncultured genome RUG14341

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Hyphomonas sp. UBA1474


ncbi_organism_name: Planktotalea sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F12926_081012

ncbi_submitter: Broad Institute


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW456-11-11-14-LB1

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: France: Rade de Villefranche-sur-Mer

ncbi_isolation_source: plastic in seawater

ncbi_organism_name: Guptibacillus hwajinpoensis

ncbi_submitter: Instituto de Biotecnologia


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: water

ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Streptomyces sp. NPDC053705

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pantoea cypripedii

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Floor press

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Dialister invisus

ncbi_submitter: EMG


ncbi_country: Kuwait

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: UDRI


ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-276

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Anaerolineales bacterium

ncbi_strain_identifiers: new MAG-276

ncbi_submitter: Micoorganism


ncbi_country: USA: Texas

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: Avena fatua rhizosphere soil heavy density fraction time point 9 weeks

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Streptomyces ossamyceticus


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Jiangsu

ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of Antioquia


ncbi_country: USA: Delaware

ncbi_isolation_source: necrotic enteritis field case

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: RMIT


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0081

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Argentina: Vila; Santa Fe

ncbi_isolation_source: first pond of the AUR serial dairy industry stabilization pond system

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: INTA


ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Adekunle Ajasin University


ncbi_country: Japan:Okinawa; Iriomote Island

ncbi_isolation_source: Soil

ncbi_organism_name: Virgisporangium aliadipatigenens

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_isolation_source: sputum (induced)

ncbi_organism_name: Streptococcus sp. HMSC074F05

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_organism_name: Streptococcus canis

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_organism_name: Pseudomonas kribbensis

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Enterococcus sp. AZ188


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC057273

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Guinea

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Danish Technical University


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Cleveland Clinic


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Gwangju-si

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter sp. BT523

ncbi_submitter: Seoul Women's University


ncbi_country: Japan

ncbi_isolation_source: non-salted pickle solution used in production of sunki (Japanese traditional fermented leaves and stems of red turnips)

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus kisonensis;x__Lentilactobacillus kisonensis DSM 19906 = JCM 15041


ncbi_organism_name: Bacillus sp. JJ1562

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JJ1562


ncbi_organism_name: Methylophilus sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_assembly_name: Rumen uncultured genome RUG13287

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Lactiplantibacillus plantarum


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_organism_name: uncultured Pumilibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Brazil: Manaus

ncbi_isolation_source: endophytic of Paullinia cupana (Mart) Ducke

ncbi_organism_name: Streptomyces griseofuscus

ncbi_submitter: Universidade Federal de Mato Grosso


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Stockholm University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: EPFL


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B19(2017)

ncbi_submitter: University of Sao Paulo


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Streptomyces agglomeratus

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Finland: Olkiluoto

ncbi_organism_name: Desulfurivibrio sp.

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Iceland: a creek near lake Kollavikurvatn

ncbi_isolation_source: cyanobacterial mat

ncbi_organism_name: Sediminicoccus sp. KRV36

ncbi_submitter: Institute of Microbiology, CAS


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: IMG-taxon 2642422525 annotated assembly

ncbi_organism_name: Pelosinus fermentans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Ireland: Dublin

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Trinity College Dublin


ncbi_country: USA: California; Eel River; Elder Creek

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Oscillatoriales cyanobacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Escherichia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Facultad de Quimica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Atlantibacter hermannii


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_country: USA: CA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Gemmiger stercorigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;s__Candidatus Gemmiger stercorigallinarum


ncbi_isolation_source: marine

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Mesorhizobium japonicum

ncbi_strain_identifiers: R7ANSxCC1192 excon 2

ncbi_submitter: Curtin University


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: Psychrobacter sp HII-4

ncbi_isolate: Psychrobacter sp. HII-4

ncbi_isolation_source: salted salmon

ncbi_organism_name: Psychrobacter sp. HII-4

ncbi_strain_identifiers: Psychrobacter sp. HII-4

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: India

ncbi_isolation_source: ETA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_organism_name: Streptomyces chiangmaiensis

ncbi_submitter: Chulabhorn Graduate Institute


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Veillonella caviae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human blood of bacteremia patient

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus saniviri;x__Lacticaseibacillus saniviri JCM 17471 = DSM 24301


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Health Research Institutes


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Pseudolysinimonas sp.


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Cerasicoccus fimbriatus

ncbi_submitter: Xiamen University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Chromatiales bacterium


ncbi_organism_name: Lachnospiraceae bacterium 45-P1

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Urinary tract

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Johannesburg


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Enterobacter sp. R-1.5.3

ncbi_submitter: University of Oldenburg


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Taiwan

ncbi_isolation_source: compost

ncbi_organism_name: Ollibium composti

ncbi_submitter: Nation Chung Hsing University


ncbi_country: Mexico: Yaqui Valley; Sonora

ncbi_isolation_source: clay soil with high temperature around 45 degrees Celsius

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Instituto tecnologico de Sonroa


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: Bacteroides uniformis


ncbi_strain_identifiers: USDA SJL-060

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Hardjo;x__Leptospira interrogans serovar Hardjo-prajitno


ncbi_organism_name: Thomasclavelia ramosa


ncbi_organism_name: uncultured Synergistaceae bacterium


ncbi_isolate: spongia

ncbi_organism_name: Streptomyces parvulus

ncbi_submitter: BGI Research


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Mahidol University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Elusimicrobiota bacterium


ncbi_country: Venezuela: Caracas

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands

ncbi_strain_identifiers: STEC 2954

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Pakistan: Isb

ncbi_isolation_source: probiotic supplement

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: NIBGE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_country: Comoros

ncbi_submitter: University of Bath


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Herd 226

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 859

ncbi_submitter: University of Calgary


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_country: India: Vellore

ncbi_submitter: Christian Medical College


ncbi_country: Germany

ncbi_isolation_source: Groin swab

ncbi_submitter: SurvCARE


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_submitter: Washington University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: New York

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Argentina

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Sphingobacterium sp. UBA4750

ncbi_submitter: University of Queensland


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0174

ncbi_strain_identifiers: VAN 335

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Salinicola sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Acetobacter orientalis

ncbi_submitter: Teagasc


ncbi_isolate: Microbacterium sp. Nx66

ncbi_isolation_source: valley

ncbi_organism_name: Microbacterium sp. Nx66

ncbi_strain_identifiers: Microbacterium sp. Nx66

ncbi_submitter: GMGM


ncbi_country: China: Zhengzhou

ncbi_isolation_source: bile

ncbi_organism_name: Escherichia coli

ncbi_submitter: First Affiliated Hospital of Zhengzhou University


ncbi_country: Australia: Queensland

ncbi_isolation_source: carcass rinsate

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation (CSIRO)


ncbi_isolation_source: Raw Almonds

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Southern Ocean

ncbi_isolation_source: Seaweed

ncbi_organism_name: Pseudoalteromonas ruthenica

ncbi_submitter: Technical University of Denmark


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Auckland


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Canada: Toronto

ncbi_isolation_source: Carrot juice

ncbi_submitter: Health Canada


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Russia

ncbi_organism_name: Thermohydrogenium kirishiense

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chung Shan Medical University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Chlorobiales bacterium

ncbi_submitter: University of Konstanz


ncbi_country: Finland

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0276

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: China: Jiangsu

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068


ncbi_organism_name: Muriicola sp. E247

ncbi_submitter: zhejiang sci-tech university


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Sanya

ncbi_isolation_source: food

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Lake Michigan College; Berrien County; Michigan

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Chicago


ncbi_organism_name: Salmonella sp. NW426

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: 2887MB;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_organism_name: Pseudomonas khavaziana

ncbi_submitter: Northwest A&F University


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Hospital Muenster


ncbi_country: USA: NY

ncbi_isolation_source: water


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: Cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Cloacibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Russia: Vologda region

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Anatilimnocola floriformis

ncbi_submitter: Research Center of Biotechnology of RAS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Massachusetts General Hospital


ncbi_country: China: Beijing

ncbi_isolation_source: patients

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus aureus


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_isolation_source: Pharygitis

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_organism_name: Paracoccus sediminilitoris

ncbi_submitter: Xiamen University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Oregon State University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Quanzhou Bay

ncbi_isolation_source: Coastal sediment

ncbi_organism_name: Aestuariivivens sediminicola

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: CSIR-NEERI


ncbi_organism_name: Pseudomonas putida


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: ZLB

ncbi_submitter: Enze Hospital


ncbi_organism_name: Streptomyces europaeiscabiei


ncbi_isolation_source: Urine

ncbi_organism_name: Achromobacter denitrificans

ncbi_submitter: GHENT UNIVERSITY


ncbi_isolation_source: Adult stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: University of Parma


ncbi_isolation_source: wastewater treatment reactor

ncbi_organism_name: Thauera sp. 28

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: USA: NYC

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: human skin

ncbi_organism_name: Actinomyces graevenitzii

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: Florida Keys; Florida

ncbi_isolation_source: degrading mangrove leaf

ncbi_organism_name: Vibrio sp. MA64

ncbi_submitter: Pennsylvania State University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: Bordetella pertussis

ncbi_strain_identifiers: F

ncbi_submitter: Vircell S.A.


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Roseomonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptomyces sp. NPDC092046

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Ratteibacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Ratteibacteria;x__unclassified Candidatus Ratteibacteria;s__Candidatus Ratteibacteria bacterium


ncbi_organism_name: uncultured Leptospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lachnospira eligens


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Candidatus Ferrigenium altingense


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Estonia: Tallinn; ITKH

ncbi_isolation_source: wound discharge

ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: cattle

ncbi_submitter: United State Department of Agriculture


ncbi_submitter: Weifang People's Hospital


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_name: freshwater MAG --- F4_bin-256

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Fuerstiella sp.

ncbi_submitter: Harvard University


ncbi_isolation_source: fish gut metagenome

ncbi_submitter: EMG


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Toho University


ncbi_organism_name: Erwinia sp. MMLR14_017

ncbi_submitter: University of California, Irvine


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Aarhus University


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Tokyo Metropolitan Institute of Gerontology


ncbi_organism_name: Candidatus Eubacterium avistercoris

ncbi_submitter: Quadram Institutte


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: Coastal surface sea water

ncbi_organism_name: Loktanella sp. D2R18


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Universite Laval


ncbi_country: Singapore

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Public Health Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Borreliella californiensis

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Left guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Haemophilus parainfluenzae


ncbi_organism_name: Ponticoccus sp. SC2-20

ncbi_submitter: Shantou University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pseudomonas sp. UBA6315


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Melioribacter sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Mesorhizobium sp. WSM2240

ncbi_submitter: Murdoch University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Rothia amarae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: pasta filata cheese

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: USA: Ohio

ncbi_isolation_source: environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Ireland

ncbi_isolation_source: Sheep/Soil

ncbi_submitter: University College Dublin


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Fimenecus stercoravium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Fimenecus;s__Candidatus Fimenecus stercoravium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;s__Candidatus Fimenecus stercoravium


ncbi_country: USA: Walter Reed Army Medical Center

ncbi_isolation_source: tibia/osteomyelitis of diabetes patient

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Methylocystis sp. IM4

ncbi_submitter: Chungbuk National University


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: unverisity medical center groningen


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Algeria: Ouargla

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universiteit Gent


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola


ncbi_organism_name: uncultured Faecalibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: uncultured Flavihumibacter sp.

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruthenibacterium sp.


ncbi_organism_name: Nannocystaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: Microvirga sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Virginia

ncbi_isolation_source: white-tailed deer feces

ncbi_organism_name: Pseudomonas sp. 14P_5.3_Bac1

ncbi_submitter: Washington University in St. Louis


ncbi_country: Japan: Peter the Great Bay

ncbi_isolation_source: sediment

ncbi_organism_name: Marinobacter bryozoorum

ncbi_submitter: Anhui University


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Sakhalin; Daginskiye Thermal Springs

ncbi_isolation_source: enrichment culture from terrestrial mud volcano

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_assembly_name: Rumen uncultured genome RUG13111

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Mahidol University


ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Streptomyces niveus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Japan

ncbi_isolation_source: stool

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: Atlantic Ocean

ncbi_isolation_source: Coastal ocean water

ncbi_organism_name: Vibrio sp. B516a

ncbi_submitter: NIOZ Royal Netherlands Institute for Sea Research


ncbi_organism_name: Dickeya solani GBBC 2040

ncbi_strain_identifiers: GBBC 2040

ncbi_submitter: James Hutton Institute


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: BGI Research


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Achromobacter pulmonis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Methylopumilus sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Washington


ncbi_organism_name: Anaerotignum lactatifermentans

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: freshwater

ncbi_organism_name: Roseofilum reptotaenium CS-1145

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: Germany: Ulm

ncbi_isolation_source: throat

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Flea

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: South Korea

ncbi_isolation_source: freshwater reservoir

ncbi_organism_name: Lacihabitans soyangensis

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_country: Japan:Aomori; Nishimeya-mura

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Hirosaki University


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Denitratisoma sp. DHT3

ncbi_submitter: Academia Sinica


ncbi_submitter: Centers for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Stanley


ncbi_country: Australia: Newcastle

ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_submitter: EMG


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Thalassolituus sp.


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Rickettsiaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Halobacteriovoraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Sichuan

ncbi_isolation_source: Anal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coprobacillus sp. BIOML-A1

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: ETH Zurich


ncbi_country: Canada

ncbi_isolation_source: food

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,12:i:-


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium mastitidis

ncbi_submitter: Duke University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0910

ncbi_submitter: Broad Institute


ncbi_country: India

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Translational Health Science and Technology Institute (THSTI)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: UIUC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Primary Effluent)

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Cardiff University


ncbi_country: Czech Republic

ncbi_isolation_source: bodily cavity

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_country: Germany


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Longicatena sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Saccharofermentanales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecalis EnGen0080


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Sphingomonas kaistensis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: Dragon spring; acid-sulfate-chloride geothermal spring; from yellow elemental sulfur (SO) deposition zone and brown; Fe-oxyhydroxide zone

ncbi_organism_name: Hydrogenobaculum sp. 3684

ncbi_submitter: US DOE Joint Genome Institute


ncbi_assembly_name: Fenollaria sporofastidiosus EMRHCC_24

ncbi_organism_name: Fenollaria sporofastidiosus

ncbi_submitter: UNIVERSITY OF EAST ANGLIA, UK


ncbi_country: Netherlands

ncbi_strain_identifiers: NHmuc

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces alboflavus

ncbi_strain_identifiers: NRRL B-2373

ncbi_submitter: University of Illinois


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_organism_name: Oceanococcaceae bacterium

ncbi_submitter: Yantai University


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Rickettsia sp.

ncbi_submitter: The University of Auckland


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Bacteroides reticulotermitis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Tianjin

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Tianjin Shengli Group Co., Ltd


ncbi_assembly_name: IMG-taxon 2634166301 annotated assembly

ncbi_organism_name: Sphingobacterium mizutaii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Terrabacter sp. NPDC000476

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0025


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudolactococcus piscium

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Pseudomonas sp. L7

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus sp. HMSC62B09

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: bacterium

ncbi_submitter: Northwestern University


ncbi_country: China

ncbi_isolation_source: Oil produced water

ncbi_organism_name: Neobacillus mesonae

ncbi_submitter: Northwest University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China Medical University


ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Streptomyces sp. C10-9-1

ncbi_submitter: BGI Research


ncbi_organism_name: Alistipes communis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phocaeicola plebeius


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Singapore Food Agency


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia sp. WS1620

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Mississippi State University


ncbi_isolate: metabat2_coassembly_bwa.891 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.891 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas sp. DC480

ncbi_submitter: University of Florida


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: stool from person on cruise ship

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_submitter: Institut Pasteur


ncbi_organism_name: Proteus sp. G2626

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2626


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- VK2_bin-1839

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Candidatus Yaniella excrementavium

ncbi_submitter: Quadram Institutte


ncbi_country: Canada: NS

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: Harvard University


ncbi_country: Germany

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Boston

ncbi_organism_name: Collinsella sp. BIOML-A5

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudogracilibacillus sp. SO30301A

ncbi_submitter: Philippine National Collection of Microorganisms


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_organism_name: Escherichia coli O157:H7 str. K2191

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K2191


ncbi_country: Ethiopia

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Drexel University College of Medicine


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_organism_name: Parabacteroides distasonis ATCC 8503

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis ATCC 8503


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Portugal: Oporto

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: REQUIMTE-UCIBIO. Faculdade de Farmacia da Universidade do Porto.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Oak Ridge National Lab East Fork Poplar Creek (EFPC) study site

ncbi_isolation_source: sediment from a natural stream that has been contaminated with Hg from upstream sources

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Oak Ridge National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: USA: VA

ncbi_isolation_source: creek water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: France: Rennes

ncbi_isolation_source: nasal carriage

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Acidovorax temperans

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Cytobacillus sp.

ncbi_submitter: Tang lab


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eikenella halliae

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-409-L18

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Australia

ncbi_isolation_source: cattle feces

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_strain_identifiers: DSM 1296T

ncbi_submitter: Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides;s__Clostridioides difficile;x__Clostridioides difficile ATCC 9689 = DSM 1296


ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolate: L. plantarum A6

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: L. plantarum A6

ncbi_submitter: UNIVERSITY OF TORONTO


ncbi_country: Ghana: Sekondi-Takoradi

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Bacillus cereus BAG5X12-1

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus BAG5X12-1


ncbi_country: Brazil: Campinas

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Canada: QC

ncbi_organism_name: Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-

ncbi_submitter: Laboratory for Foodborne Zoonoses


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Brigham Young University


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Streptomyces althioticus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Escherichia coli

ncbi_submitter: Carleton Univeristy


ncbi_organism_name: Ruminococcus sp. UBA6407

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_organism_name: Sphingomonas sp. DC4000-5

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces flaveolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_country: United Kingdom: Sutton Bonington

ncbi_isolation_source: cattle slurry

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Nottingham


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: USA

ncbi_organism_name: Citrobacter freundii complex sp. CFNIH8

ncbi_submitter: NIH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter freundii complex sp. CFNIH8


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx22452

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptomyces sp. NPDC059215


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Desulfovibrio sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 1; Comp 2; UV layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Priestia megaterium

ncbi_submitter: BGI


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_country: USA: Pennsylvania

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Tennessee

ncbi_isolation_source: primary hospital lab

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Food-borne Pathogen Omics Research Center


ncbi_organism_name: Paraburkholderia sp.


ncbi_country: China: Nanchang; Jiangxi Province

ncbi_organism_name: Streptomyces sp. SCA2-2

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: United Kingdom: Newcastle

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux


ncbi_isolation_source: liver

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: EMG


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides fragilis CAG:558

ncbi_submitter: DTU


ncbi_organism_name: Marivita cryptomonadis

ncbi_submitter: Shantou University


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: MA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_country: Ireland

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: China: Hunan

ncbi_isolation_source: food

ncbi_organism_name: Salmonella sp. hn-f5

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_country: USA: California

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_organism_name: Providencia stuartii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Halomonas halodenitrificans DSM 735

ncbi_strain_identifiers: DSM 735

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: MD

ncbi_organism_name: Aeromonas sp. FDAARGOS 1414

ncbi_strain_identifiers: FDAARGOS 1414

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 2 / B; 5m depth; 0.1 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woykeibacteriota;s__Candidatus Woykebacteria bacterium GWB1_45_5


ncbi_organism_name: Pasteurellaceae bacterium BR2267

ncbi_submitter: The University of Queensland


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Streptomyces sp.

ncbi_submitter: EMG


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Gluconacetobacter liquefaciens

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Florida

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. AAUFL_F2_KS46

ncbi_submitter: Emory University


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: active hydrothermal vent in Okinawa Trough

ncbi_organism_name: Exiguobacterium sp. HVEsp1

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. HVEsp1


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University of Parma