ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_submitter: Stanford University School of Medicine


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_assembly_name: freshwater MAG --- Loclat_bin-10731

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


gtdb_representative: f

ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_level: Scaffold

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Anaerolineaceae bacterium UBA4775

ncbi_submitter: University of Queensland


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: scu


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 202 (4-3163997)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 202 (4-3163997)


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_country: Germany: Widdersdorf

ncbi_isolation_source: root

ncbi_organism_name: Oerskovia sp. Root22

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_level: Chromosome

ncbi_country: Australia: Queensland

ncbi_organism_name: Chlamydia pecorum MC/MarsBar

ncbi_strain_identifiers: MC;MarsBar

ncbi_submitter: Queensland University of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: Rumen uncultured genome RUG12039

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Canada: Alberta

ncbi_isolation_source: Feedlot catch basin

ncbi_organism_name: Escherichia coli

ncbi_submitter: Government of Alberta


ncbi_country: USA: Boston

ncbi_isolation_source: Stool Culture

ncbi_organism_name: Eubacterium sp.


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Staphylococcus epidermidis 12142587

ncbi_submitter: URMITE


ncbi_country: USA: Rhode Island; South Kingstown

ncbi_isolation_source: hemolymph of Ciona intestinalis

ncbi_organism_name: Rickettsia endosymbiont of Cardiosporidium cionae

ncbi_refseq_category: reference genome

ncbi_submitter: University of Rhode Island


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_submitter: Universiteit Gent


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured bacterium


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_submitter: Hospital Ramon y Cajal


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: China: Jinan; Liaocheng

ncbi_submitter: shandong university


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Brachyspira aalborgi

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Shinella sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: hybridoma cell culture

ncbi_organism_name: Ralstonia insidiosa

ncbi_submitter: Heidelberg University Hospital


ncbi_assembly_level: Complete Genome

ncbi_country: China:30 Puzhu South Road; Pukou District; Nanjing City; Jiangsu Province

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Yancheng Institute of Technology


ncbi_organism_name: Pseudomonas frigoris

ncbi_submitter: Insititute of Microbiology, Chinese Academy of Sciences

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Escherichia coli MS 21-1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Nocardia caishijiensis NBRC 108228

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: USA: MD

ncbi_isolation_source: ground turkey

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_country: China: Sichuan

ncbi_isolation_source: urine

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Philippines

ncbi_isolation_source: marine sediment

ncbi_organism_name: Planctomycetales bacterium 10988

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Pharygitis

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: James Cook University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0999

ncbi_submitter: Broad Institute


ncbi_organism_name: Prevotella koreensis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Escherichia coli M605


ncbi_isolation_source: marine

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Colombia

ncbi_isolation_source: Abdominal abscess

ncbi_organism_name: Staphylococcus aureus DAR5804


ncbi_country: Viet Nam:Ho Chi Minh City

ncbi_isolation_source: Gut contents of Anabas testudineus

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hiroshima University


ncbi_country: India: Gujarat

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: Chinese sausages

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hunan Agricultural University


ncbi_country: USA: Texas

ncbi_isolation_source: midribs of infected leaves

ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_submitter: University of California


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea: East Sea; Dokdo

ncbi_isolation_source: Seawater

ncbi_organism_name: Tateyamaria omphalii

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar London


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: the feces of breast-fed infants

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Hebei Agricultural University


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolate: YS river water

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lachnospira eligens

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Candidatus Pantoea formicae

ncbi_submitter: The Ohio State University


ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Leptospirales bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Wageningen Bioveterinary Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine sediment sample bbl-31

ncbi_organism_name: Victivallales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_country: South Korea:Jinju

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Innoviva Specialty Therapeutics


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Alkalihalobacillus trypoxylicola NBRC 102646

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Mycobacterium sp.


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_submitter: University of Calgary


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_isolation_source: urine

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cc227

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Taiwan

ncbi_submitter: China Medical University, Taichung, Taiwan


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China agricultural university


ncbi_isolation_source: cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Sphingomonas paucimobilis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Granulicella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil

ncbi_isolation_source: Frozen Chicken Carcass

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Desulfotignum sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: MS

ncbi_isolation_source: Leg wound

ncbi_organism_name: Staphylococcus aureus DAR3591

ncbi_submitter: Broad Institute


ncbi_organism_name: Eubacterium callanderi

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_submitter: CAS Key Laboratory of Microbial Physiological & Metabolic Engineering, State Key Laboratory of Mycol


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli O111:NM str. 03-3484

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. 03-3484


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Georgia Tech


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: tongue scraping

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Streptomyces tuirus


ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: USAMRIID


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Haemophilus influenzae PittGG

ncbi_strain_identifiers: PittGG

ncbi_submitter: Center for Genomic Sciences, Allegheny-Singer Research Institute


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Enterococcus faecalis TX1467

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Japan

ncbi_organism_name: Hoylesella shahii DSM 15611 = JCM 12083

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Hoylesella;s__Hoylesella shahii;x__Hoylesella shahii DSM 15611 = JCM 12083


ncbi_country: Norway: The north the Yellow River station China

ncbi_isolation_source: Surface sediments from the arctic region

ncbi_organism_name: Lutibacter citreus

ncbi_submitter: Shandong University


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: Czech Republic: Hradec Kralove Region

ncbi_isolation_source: wound abdomin

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Charles University in Prague


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Zhangjiagang Traditional Chinese Medicine Hospital


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: FACU 2024

ncbi_submitter: Faculty of Agriculture, Cairo University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: Institute of Antibiotics


ncbi_organism_name: Streptomyces sp. LamerLS-316


ncbi_organism_name: Microcoleus sp. Pol8_D6

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South Dakota State University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: AAFC


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_submitter: Huzhou CDC


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Marinomonas sp. RS-M-Aa-14

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: University of Florida


ncbi_organism_name: Acidovorax facilis

ncbi_submitter: Iowa State University


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: PVC group bacterium

ncbi_submitter: Kiel University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Hungary: Szeged wastewater treatment plant

ncbi_isolation_source: Anaerobic sludge from Szeged Municipal wastewater plant s biogas plant Biogas Plant

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: Sorangium sp. So ce367

ncbi_strain_identifiers: So ce367

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce367


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Caballeronia sp. DA-9

ncbi_submitter: the ocean university of China


ncbi_organism_name: Rickettsiella sp.

ncbi_submitter: Wageningen University & Reseach


ncbi_assembly_name: freshwater MAG --- LJ_bin-2730

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: Rostov-na-Donu

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: SRCAMB


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1319

ncbi_submitter: Broad Institute


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes communis


ncbi_country: Puerto Rico

ncbi_isolation_source: internal stem tissue

ncbi_organism_name: Niallia circulans

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Neisseria polysaccharea

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_country: United Kingdom

ncbi_isolation_source: East Anglia

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium leguminosarum;x__Rhizobium leguminosarum bv. phaseoli;x__Rhizobium leguminosarum bv. phaseoli 4292


ncbi_country: Laos

ncbi_isolation_source: River

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Bern


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Tompkins; Saskatchewan

ncbi_isolation_source: cow lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: USDA/ARS/National Animal Disease Center


ncbi_isolation_source: Nasal Spray

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_organism_name: Rariglobus sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: Rumen uncultured genome RUG13876

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Oldenburg


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: Oregon State University


ncbi_country: China: Xinjiang

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Agricultural Science


ncbi_country: Mayotte

ncbi_isolation_source: water

ncbi_organism_name: Leptospira levettii

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus acidophilus;x__Lactobacillus acidophilus DSM 20079 = JCM 1132 = NBRC 13951 = CIP 76.13


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Mexico: Monterrey; Nuevo Leon

ncbi_isolation_source: Tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: cerebrospinal fluid (CSF)

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Stickney; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ireland: Dublin

ncbi_isolation_source: periorbital

ncbi_submitter: Trinity College Dublin


ncbi_submitter: South China Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: gut

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0403

ncbi_submitter: Broad Institute


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_country: USA: Looe Key Reef; Florida Keys

ncbi_isolation_source: surface mucus layer

ncbi_organism_name: Halomonas sp. R1t8

ncbi_submitter: University of Florida


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacillus mycoides


ncbi_country: Austria: Neusiedler See

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: USA: Detroit; Michigan; urban community garden

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Wayne State University


ncbi_country: Spain

ncbi_isolation_source: clam larvae aquaculture

ncbi_organism_name: Phaeobacter piscinae

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Unenriched enriched sediment from core 2 20 to 25cm

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Northeastern University


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: zhejiang University


ncbi_country: China: Xinjiang

ncbi_submitter: NanJing Tech University


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: Pau University

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_organism_name: Candidatus Avispirillum sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avispirillum;x__unclassified Candidatus Avispirillum;s__Candidatus Avispirillum sp.


ncbi_organism_name: Staphylococcus sp. Mo2-6

ncbi_submitter: Chung-Ang university


ncbi_country: China: Haikou; Nanhai

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Streptomyces cellostaticus

ncbi_submitter: Guangxi Minzu University


ncbi_country: Atlantic Ocean: Carter seamount

ncbi_organism_name: Micromonospora sp. C28ISP2-4

ncbi_submitter: Univeristy of Bristol


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Seoul National University


ncbi_organism_name: Streptomyces sp. SBC-4

ncbi_submitter: Kangwon National University


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: Szent Istvan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: China: Liuzhou

ncbi_isolation_source: soil

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: College of Agriculture, Guangxi University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus schweitzeri

ncbi_submitter: SC


ncbi_isolation_source: Fecal samples

ncbi_submitter: INSERM UMR 1137


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_isolation_source: root tuber

ncbi_organism_name: Bacillus siamensis

ncbi_submitter: hangzhou normal university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus siamensis


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Rhizobiaceae group bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;x__environmental samples;s__uncultured Rhizobiaceae group bacterium


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus


ncbi_country: Poland: Otwock

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Rumen uncultured genome RUG284

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: AOP29_B2_surf _bin _19

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: AOP29_B2_surf _bin _19

ncbi_submitter: Genoscope


ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: food

ncbi_organism_name: Brochothrix thermosphacta

ncbi_submitter: University of Queensland


ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: USA

ncbi_organism_name: Pseudomonas syringae pv. viburni

ncbi_strain_identifiers: ICMP 3963

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. viburni

ncbi_type_material_designation: assembly from pathotype material


ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfurospirillaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_strain_identifiers: affine MC_221

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Iran: Persian Gulf

ncbi_organism_name: Streptomonospora sp. PA3

ncbi_submitter: University of Turku


ncbi_submitter: Sungkyunkwan University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Sweden: Gothenburg

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Lysobacter enzymogenes

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Belgium: Walenbos forest; Tielt-Winge

ncbi_organism_name: Candidatus Rhabdochlamydia sp. W815

ncbi_submitter: Centre for Microbiology and Environmental Systems Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Candidatus Rhabdochlamydiaceae;g__Candidatus Rhabdochlamydia;x__unclassified Candidatus Rhabdochlamydia;s__Candidatus Rhabdochlamydia sp. W815


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Weissella confusa

ncbi_submitter: UMass Amherst


ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_country: South Africa: Durban

ncbi_isolation_source: urine

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Pseudooceanicola nitratireducens

ncbi_submitter: Xiamen University


ncbi_assembly_name: freshwater MAG --- MJ-2014-D4_bin-157

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: environmental

ncbi_organism_name: Siminovitchia fortis

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Desulfocapsaceae bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterobacter hormaechei subsp. steigerwaltii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Germany: Vilsendorf; Bielefeld

ncbi_isolation_source: soil

ncbi_organism_name: Corynebacterium kalinowskii

ncbi_submitter: Uni Bielefeld


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: University of Chicago


ncbi_country: USA: IA

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: Saudi Arabia: Red Sea; Suakin Deep

ncbi_isolation_source: marine brine pool

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: KAUST


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_strain_identifiers: FYH-SY

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: India: Vellore

ncbi_submitter: Christian Medical College


ncbi_organism_name: Mesorhizobium sp. M1153

ncbi_submitter: Washington State University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: Switzerland

ncbi_isolation_source: skin infection

ncbi_organism_name: Macrococcus bovicus

ncbi_submitter: University of Bern


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_organism_name: Desulfomonilia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Ewingella americana

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pandoraea pnomenusa

ncbi_submitter: Genexplore Diagnostics and Research Centre Pvt. Ltd.


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120734


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: South Korea: Seoul

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: water - river

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: ANSES


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Weissella cibaria

ncbi_strain_identifiers: KNUT 0156

ncbi_submitter: KOREA NATIONAL UNIVERSITY OF TRANSPORTATION


ncbi_organism_name: Odoribacter laneus


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Bethesda

ncbi_isolation_source: fecal pellet

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Institutes of Health


ncbi_country: China: Shenzhen

ncbi_organism_name: Marinobacter daepoensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_strain_identifiers: KTS.20.027 TP.THY

ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Lentilactobacillus senioris

ncbi_submitter: Technical University of Munich


ncbi_country: China: Bohai Bay

ncbi_isolation_source: marine plastic biofilm

ncbi_organism_name: Exiguobacterium marinum

ncbi_submitter: TianJin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium marinum


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Jamaica: West Indies

ncbi_isolation_source: sugarcane

ncbi_organism_name: Pantoea sp. RIT413

ncbi_submitter: Rochester Institute of Technology


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Microbacteriaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11743

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Brocheal washing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_strain_identifiers: kraussei MC_95

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Japan:Hokkaido; Furano

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces seoulensis

ncbi_submitter: Graduate School of Agricultural and Life Sciences, The University of Tokyo


ncbi_organism_name: Dickeya ananatis

ncbi_strain_identifiers: CFBP 1278

ncbi_submitter: University of Hawaii


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Escherichia coli 1365

ncbi_submitter: University Medical Center Utrecht


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Malaysia

ncbi_submitter: University of Malaya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_organism_name: Pyrinomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_strain_identifiers: MAVP-L

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Zhejiang university


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_submitter: Tarim University


ncbi_organism_name: Streptomyces gobiensis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Children Hospital of Nanjing Medical University


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Serratia sp. CY47612

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY47612


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: EMG


ncbi_assembly_name: CCCM 038

ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: CCCM 038

ncbi_submitter: The University of Queensland


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Anaplasma phagocytophilum

ncbi_submitter: Future Genomics Technologies BV


ncbi_organism_name: Thomasclavelia cocleata


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacillus sp. NPDC094064

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. NPDC094064


ncbi_country: Brazil

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: Russia: Tver region

ncbi_isolation_source: Peat soil [ENVO:00005774]

ncbi_organism_name: Candidatus Methylospira mobilis

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_assembly_name: IMG-taxon 2663762718 annotated assembly

ncbi_organism_name: Lutimaribacter pacificus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Shigella flexneri

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_country: Peru:Chota; San Juan de Licupis; Pay Pay

ncbi_organism_name: Yersinia pestis PY-04

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Pantoea sp. PNT02

ncbi_submitter: University of Chicago


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: USA: Massachusetts

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_country: United Kingdom

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Japan: Nagano; Suwa

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Hokkaido University


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Northeastern University


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Sudan

ncbi_organism_name: Brucella melitensis F6/05-6

ncbi_submitter: Broad Institute


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 133

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Animal Quarantine Service, MAFF

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Thauera sp.

ncbi_submitter: University of Queensland


ncbi_country: China:Inner Mongolia

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Devosia rhizosphaerae

ncbi_submitter: Inner Mongolia University


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Texas Tech University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Spain: Ribadeo; Galicia

ncbi_isolation_source: larvae

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine


ncbi_organism_name: Kosakonia sp.


ncbi_isolation_source: Deep sea water

ncbi_organism_name: Streptomyces hygroscopicus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: October University for Modern Sciences and Arts


ncbi_country: China: Beijing city

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Tianjin Genskey Medical Technology Co., Ltd


ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_genome_category: derived from single cell

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: Hungary: Debrecen

ncbi_isolation_source: Bird

ncbi_organism_name: Escherichia coli

ncbi_submitter: Debreceni Egyetem


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospira pectinoschiza

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Cellvibrionales bacterium UBA984

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Brevundimonas sp.


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Bristol


ncbi_organism_name: [Eubacterium] brachy


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_submitter: Lebanese American University Microbial Pathogenomics Lab


ncbi_submitter: Geneva University Hospitals


ncbi_country: Greece

ncbi_isolation_source: plant root

ncbi_organism_name: Plastoroseomonas hellenica

ncbi_submitter: UNIVERSITY OF GENT


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Stahliibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Stahliibacteriota;x__unclassified Candidatus Stahliibacteriota;s__Candidatus Stahliibacteriota bacterium


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_submitter: IST Austria


ncbi_country: USA: Arizona

ncbi_isolation_source: Gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Borreliella garinii

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_country: China

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri 2002141

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_country: China: Guangxi

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Clostridioides sp. ZZV14-6044

ncbi_submitter: Northern Arizona University


ncbi_country: Brazil: Rio Grande do Sul State

ncbi_isolation_source: visceral organs

ncbi_submitter: Universidade Luterana do Brasil

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum


ncbi_organism_name: Roseburia hominis

ncbi_submitter: EMG


ncbi_isolation_source: pus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Shahid Beheshti University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA3508

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA3508


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Mahidol University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: Seymour; Indiana

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium sp. K36

ncbi_submitter: Central Michigan University


ncbi_country: China: East China Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Nonlabens sp. SY33080

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Tunisia: Tebourba

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus sp. Tg11

ncbi_submitter: CBBC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Tg11


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: BGI


ncbi_isolation_source: marine sediment

ncbi_organism_name: Paracoccus sediminis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Ottowia sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome


ncbi_isolate: AOP12_A1_coeur _bin _6

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: AOP12_A1_coeur _bin _6

ncbi_submitter: Genoscope


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Anaerostipes hadrus


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_organism_name: uncultured Mariniphaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University


ncbi_country: USA: Philadelphia; PA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: cold seep

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_assembly_name: freshwater MAG --- F-4_bin-054

ncbi_isolation_source: pond

ncbi_submitter: BILS


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: MA; Boston

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Broad Institute


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli DEC4E

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_name: freshwater MAG --- Ja_bin-1406

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: USA: California

ncbi_isolation_source: pear tree leaf

ncbi_organism_name: Pseudomonas fluorescens A506

ncbi_submitter: USDA-ARS


ncbi_country: Portugal: Lisbon area

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EBI


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Stenotrophomonas;x__Stenotrophomonas maltophilia group;x__unclassified Stenotrophomonas maltophilia group;s__Stenotrophomonas maltophilia group sp. Smal41


ncbi_country: China: Guangxi

ncbi_isolation_source: soil

ncbi_organism_name: Rahnella victoriana

ncbi_submitter: Nanjing Forestry University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: East China Normal University


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: Indian Ocean

ncbi_isolation_source: Sulfide

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Third Institute of Oceanography,National Oceanic Adminisstration


ncbi_country: USA

ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3727

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3727


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: China: Bejing

ncbi_isolation_source: Anus

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China Agricultural University


ncbi_country: USA: Oregon

ncbi_organism_name: Rathayibacter rathayi

ncbi_submitter: Oregon State University


ncbi_country: China: Yunnan; Qujing; Yukou Poultry Co.

ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: EMG


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Senegalimassilia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Vienna


ncbi_isolation_source: high concentration of fluoride

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: FRM

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Tehran


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M1233

ncbi_submitter: Broad Institute


ncbi_country: Canada: La Prairie

ncbi_isolation_source: infected lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii


ncbi_country: USA: Washington

ncbi_isolation_source: plant

ncbi_organism_name: Clavibacter sp. VKM Ac-2873

ncbi_strain_identifiers: VKM Ac-2873

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: Japan

ncbi_isolation_source: skin of face; 4 single-cells amplified by MDA combined with human skin metagenome reads

ncbi_organism_name: Faucicola osloensis

ncbi_submitter: bioBiome, Inc.


ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Gemmiger qucibialis


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli B28-1

ncbi_submitter: IGS


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human gut

ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: University of Pittsburgh


ncbi_country: USA

ncbi_organism_name: Mycobacterium avium

ncbi_submitter: University of Michigan Medical School


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Oceanobacillus bengalensis

ncbi_submitter: Third Institute of Oceanography, State of Oceanic Administration


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_isolation_source: gut content

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. 2011C-3573


ncbi_country: USA: New York City

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Spain: Palma de Mallorca

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: South Africa

ncbi_isolation_source: Gamka River in the Swartberg Nature Reserve

ncbi_organism_name: Nocardia gamkensis

ncbi_submitter: Chunlab, Inc


ncbi_country: Germany: Wadden Sea

ncbi_isolation_source: tidal sand-flat sediment

ncbi_organism_name: Desulfopila inferna

ncbi_submitter: Harvard University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Porphyrobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 144 (4-4451937)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 144 (4-4451937)


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Ruminiclostridium papyrosolvens DSM 2782

ncbi_submitter: Shanxi university


ncbi_country: China: Tibetan Plateau

ncbi_isolation_source: Tibetan Plateau lake

ncbi_organism_name: Arthrobacter sp. ZGTC412

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Enterobacter cloacae complex sp.6730869

ncbi_submitter: Tel Aviv Sourasky Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp.6730869


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Methylophilus glucosoxydans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Australia: Brisbane

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: The University of Queensland


ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thalassospira xiamenensis

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Phytoplasma bonamiae

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma bonamiae


ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Rhodobiaceae bacterium UBA1098


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: tissue and/or biological fluid swine

ncbi_submitter: FDA/CFSAN


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Nocardia grenadensis NBRC 108939

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Coprococcus sp. AF19-8AC

ncbi_submitter: BGI


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Hydrogenobacter sp.

ncbi_submitter: Montana State University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli C844_97

ncbi_submitter: IGS


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Ohio

ncbi_isolation_source: Fluid_Tracheal aspirate

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: metabat2_coassembly_bwa.868 MAG

ncbi_strain_identifiers: metabat2_coassembly_bwa.868 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Nigeria

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_assembly_name: freshwater MAG --- MJ110802A_bin-287

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_isolation_source: Caecum


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Slovakia: lake in Vysoke Tatry

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Pleurocapsa sp. CCALA 161

ncbi_strain_identifiers: CCALA 161

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: Small intestine

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-J20


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Devosia sp.

ncbi_submitter: Radboud University


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020013551

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_country: China: Jiangsu

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Yangzhou University


ncbi_country: Morocco

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Peptoclostridium sp. UBA4398

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Kyorin University Faculty of Medicine


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: China: Sichuan

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Pseudonocardia sp. AL041005-10

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Lentisphaeria bacterium UBA1776

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__unclassified Lentisphaeria;s__Lentisphaeria bacterium UBA1776


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0862


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H1249


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium


ncbi_country: USA: AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Streptomyces eurythermus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC059917


ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: Moldova

ncbi_isolation_source: food

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_country: Switzerland: Mt Terri URL; St-Ursanne

ncbi_isolation_source: Opalinus Clay rock porewater BRC-3 borehole

ncbi_organism_name: Desulfatitalea sp. BRH_c12


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. m1-21

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. m1-21


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA4363

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4363


ncbi_organism_name: Chlamydia trachomatis D(s)2923

ncbi_submitter: Oregon State University


ncbi_country: Canada: Quebec; Brome Lake

ncbi_isolation_source: non-axenic culture from freshwater

ncbi_submitter: Universite de Montreal


ncbi_submitter: Quadram Institutte


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium CG10_big_fil_rev_8_21_14_0_10_36_30


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)