ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Xanthomonas campestris pv. fici

ncbi_strain_identifiers: NCPPB 3796

ncbi_submitter: The Xanthomonas Threats project


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_level: Scaffold

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: United Kingdom

ncbi_isolation_source: chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Iamia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Rugosibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Campylobacteraceae bacterium


ncbi_organism_name: Roseinatronobacter monicus

ncbi_refseq_category: reference genome

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Brazil: Uberlandia; MG

ncbi_isolation_source: tracheal aspirate

ncbi_submitter: Universidade Federal de Uberlandia


ncbi_assembly_level: Chromosome

ncbi_country: Turkey: Ankara

ncbi_isolation_source: cecal sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Ankara University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces avermitilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Escherichia coli

ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: Kenya

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University College Cork


ncbi_organism_name: Lactobacillus helveticus CIRM-BIA 104

ncbi_strain_identifiers: CIRM-BIA 104

ncbi_submitter: INRA STLO


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_strain_identifiers: Fecal samples


ncbi_country: Canada: Ontario

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Copenhagen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: South Georgia (Cumberland Bay)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfobacteria bacterium

ncbi_submitter: University of Bremen


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_assembly_name: IMG-taxon 2595698242 annotated assembly

ncbi_organism_name: Selenomonas sp. GACV-9

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Norway: Troms

ncbi_isolation_source: eye

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Edinburgh


ncbi_organism_name: Enterobacter sp. E76

ncbi_submitter: University of Oxford


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Varibaculum sp.


ncbi_assembly_name: IMG-taxon 2597490341 annotated assembly

ncbi_organism_name: Borreliella japonica


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: bioreactor

ncbi_organism_name: Oblitimonas sp. UBA1343

ncbi_submitter: University of Queensland


ncbi_country: North Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Polaribacter sp. R2A056_3_33

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: China: Fujian; Longyan

ncbi_isolation_source: gold and copper mining soil

ncbi_organism_name: Brevundimonas nasdae

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_country: Antarctica

ncbi_organism_name: Arthrobacter roseus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Slovenia

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_country: France

ncbi_submitter: CHU de Bicetre


gtdb_type_species_of_genus: t

ncbi_country: Spain: Castilla y Leon

ncbi_organism_name: Endobacterium cereale

ncbi_submitter: Universidad de Salamanca


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Clostridiales bacterium UBA1770


ncbi_country: Montserrat: Caribic

ncbi_isolation_source: acidic sediment of White river in Montserrat just before the cataclysmic volcano eruption in 1995

ncbi_organism_name: Desulfosporosinus acididurans

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodococcus sp. DK176

ncbi_submitter: Korea Polar Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. DK176


ncbi_organism_name: Neolewinella sp.

ncbi_submitter: University of East Anglia


ncbi_country: China: Yunnan; Machang village

ncbi_organism_name: Yersinia pestis

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing , China


ncbi_isolation_source: Flatworm

ncbi_organism_name: Polycladidibacter stylochi

ncbi_submitter: Shenzhen University


ncbi_country: China: Beijing

ncbi_organism_name: Jilunia laotingensis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Micromonospora sp. DT15

ncbi_submitter: University of Liege


ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Terriglobus sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: marine sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS CTRL-48

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS CTRL-48

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Lachnospiraceae bacterium 29-84

ncbi_submitter: Nanjing University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sturter culture Sacco MBP

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Caulobacterales bacterium 68-7

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Clostridium sp. AF23-6LB

ncbi_submitter: BGI


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Chromatiales bacterium


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SurvCARE


ncbi_country: China: Shangzhi

ncbi_isolation_source: cow dung

ncbi_organism_name: Nocardia stercoris

ncbi_submitter: School of life science


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: geothermally-influenced stream

ncbi_organism_name: Fischerella thermalis WC249

ncbi_submitter: University of Montana


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Gansu; Aksay

ncbi_isolation_source: spleen sample

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Ethiopia

ncbi_strain_identifiers: Gemu Goffa

ncbi_submitter: EVOLMYCO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. mycoides;x__Mycoplasma mycoides subsp. mycoides str. Gemu Goffa


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Philippines

ncbi_submitter: Agroscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;x__unclassified Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis complex sp. N0157


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Pseudomonas hunanensis


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMPaM (UBA/CONICET)-Facultad de Medicina-Universidad de Buenos Aires


ncbi_organism_name: Dickeya fangzhongdai

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: North Sea

ncbi_isolation_source: coastal sea water column HE361-14 at a depth of 3m

ncbi_organism_name: Planktomarina sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_submitter: AAFC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Syntrophaceticus sp.

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Thermoanaerobacterales Family III. Incertae Sedis;g__Syntrophaceticus;x__unclassified Syntrophaceticus;s__Syntrophaceticus sp.


ncbi_country: Brazil: Rio Verde

ncbi_isolation_source: Bulk soil

ncbi_organism_name: Nocardioides sp. CER19

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China

ncbi_isolation_source: gastric juice

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_assembly_name: NOVST

ncbi_country: Nepal


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Universiteit Antwerpen


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Blautia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: Russia: Omsk

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: St Petersburg Pasteur Institute, St Petersburg, Russia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus agalactiae GB00999

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: USA: MD

ncbi_isolation_source: Oxytetracycline Medicated Fish Feed

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: France: Champs-sur-Marne

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Aphanizomenon gracile PMC649.10

ncbi_submitter: National Museum of Natural History - Paris


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW215-L1

ncbi_submitter: Arkin Lab


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: potato 7

ncbi_organism_name: Streptomyces solaniscabiei

ncbi_submitter: Agricultural Reasearch Council


ncbi_isolation_source: Distal colon

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: China: Zhejiang

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_country: France

ncbi_isolation_source: urine

ncbi_submitter: Rennes Hospital


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: University of Abuja


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Brachymonas denitrificans

ncbi_submitter: Technische Universiteit Delft


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter suis

ncbi_submitter: University of Antwerp, Belgium


ncbi_isolation_source: Intestine

ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Lederbergia galactosidilytica

ncbi_submitter: DOE Joint Genome Institute


ncbi_strain_identifiers: DSM 13

ncbi_submitter: Gottingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus licheniformis;x__Bacillus licheniformis DSM 13 = ATCC 14580


ncbi_country: Brazil: Rio de Janeiro - RJ

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: FIOCRUZ


ncbi_country: Sweden: Gothenburg

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Chalmers University of Technology


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Paraburkholderia lacunae

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Roseomonas mucosa

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Thalassospira alkalitolerans

ncbi_submitter: Ocean University of China


ncbi_country: USA

ncbi_isolation_source: throat

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Michigan


ncbi_isolation_source: lake water

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: United Kingdom

ncbi_isolation_source: periodontal pocket

ncbi_organism_name: Fusobacterium nucleatum W1481

ncbi_submitter: University of Malaya


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: water

ncbi_organism_name: Prochlorococcus marinus str. MU1411

ncbi_submitter: Xiamen University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Candidatus Palauibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;x__unclassified Candidatus Palauibacter;s__Candidatus Palauibacter sp.


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_submitter: Kiel University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: Worcestershire

ncbi_organism_name: Pseudomonas amygdali pv. morsprunorum

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. morsprunorum


ncbi_organism_name: uncultured Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: Microbacterium hominis

ncbi_submitter: ARRIAM


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus sp. MRS-253-APC-2B

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Bacilli bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_organism_name: uncultured Sutterella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Myxococcaceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Engelstadt

ncbi_isolate: LCAV

ncbi_isolation_source: beetle abdomen

ncbi_organism_name: Candidatus Bostrichicola ureolyticus

ncbi_strain_identifiers: LCAV

ncbi_submitter: Johannes Gutenberg-University Mainz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;x__Flavobacteriia incertae sedis;g__Candidatus Bostrichicola;s__Candidatus Bostrichicola ureolyticus


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic lake sediment

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Universidad de la Republica


ncbi_country: Australia: New South Wales

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_country: Russia

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Portugal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Turkey: Adana

ncbi_organism_name: Pseudomonas paralactis

ncbi_submitter: University of Toronto Mississauga


ncbi_assembly_name: freshwater MAG --- Loc081215-4m_bin-1577

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Philippines: Cebu

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. PCS3-D2

ncbi_submitter: National Institute of Molecular Biology and Biotechnology


ncbi_isolation_source: sea water

ncbi_organism_name: Pseudoalteromonas sp. SCQQ13

ncbi_submitter: Shandong University


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: national health research institutes


ncbi_country: China

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Luzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_country: China: Yangjiang

ncbi_isolation_source: Fodder

ncbi_submitter: South China Agricultural University


ncbi_country: USA: California

ncbi_submitter: University of Maryland, College Park


ncbi_country: Switzerland

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Australia: Melbourne

ncbi_isolation_source: seeds

ncbi_organism_name: Sphingomonas sp. GC_Shp_6

ncbi_submitter: Agriculture Victoria


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Newfoundland

ncbi_organism_name: Corynebacterium afermentans subsp. afermentans

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Pseudomonas glycinae

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: New York State

ncbi_isolation_source: compost heap

ncbi_organism_name: Acetobacter indonesiensis

ncbi_submitter: Cornell University


ncbi_organism_name: Staphylococcus schweitzeri

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Sinepuxent Island; MD

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_country: Argentina: Santa Cruz

ncbi_isolation_source: PAH-chronic contamined soil

ncbi_organism_name: Sphingobium sp. 22B

ncbi_submitter: CINDEFI, UNLP/CONICET


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Streptococcus sp. UBA632

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Nostoc sp.

ncbi_submitter: Spribille Lab


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Sphingobacterium sp. UBA865

ncbi_submitter: University of Queensland


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NWAFU


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Paediatrics

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_country: Chile: Los Andes

ncbi_isolation_source: Turkey meat

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: Instituto Ramon y Cajal de Investigacion Sanitaria


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Streptomyces sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Singapore

ncbi_isolation_source: Gastric biopsy tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National University of Singapore


ncbi_country: Belgium

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: KOlimastIR


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Delftia sp.

ncbi_submitter: Kiel University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: blood

ncbi_submitter: Sun-yat Sen University


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Clostridium sp. KLE 1755

ncbi_submitter: Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;x__unclassified Clostridium;s__Clostridium sp. KLE 1755


ncbi_country: France: Nord-Pas-de-Calais

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Aurantimonas sp. A3-2-R12

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Alloprevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces


ncbi_organism_name: Dorea formicigenerans


ncbi_country: China: Fujian

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces noursei

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_isolation_source: water

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_country: Iran: Kerman

ncbi_isolation_source: Barley

ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_organism_name: Pseudomonas veronii

ncbi_submitter: Jilin University


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Lund University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: France

ncbi_isolation_source: straw

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 515

ncbi_submitter: Brigham Young University


ncbi_country: Brazil: Sao Paulo;Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Rhodopseudomonas palustris HaA2

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: EMG


ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: uncultured Acetobacter sp.


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Klebsiella sp. GB_Kp060

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Clostridium sp. Marseille-P7770

ncbi_submitter: URMITE


ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Massachusetts

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Tolumonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Blautia caecimuris


ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: China CDC


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Enterobacter cloacae complex sp. 302F9

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 302F9


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_organism_name: Cellulomonas soli

ncbi_submitter: The Institute of Chemical Biology and Fundamental Medicine SB RAS


ncbi_organism_name: Stenotrophomonas sp. NPDC047960

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paraburkholderia youngii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Zafaria sp. Z1313

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Nitrospinota bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Alistipes ihumii


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Arthrobacter cryoconiti

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Italy

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA:Wyoming; Yellowstone National Park; MixyFritzy hot spring

ncbi_isolation_source: alkaline hot spring microbial mat

ncbi_organism_name: Thermomicrobium sp.

ncbi_submitter: University of Minnesota


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 60:r:e,n,x,z15


ncbi_organism_name: uncultured Bacillales bacterium


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Mycobacterium tuberculosis RGTB327

ncbi_submitter: Rajiv Gandhi Centre for Biotechnology


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Ignavibacteriales bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_submitter: University of British Columbia


ncbi_country: USA

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Child Health Research Foundation


ncbi_country: Colombia: Antioquia; Bello

ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: University of Antioquia


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Hardjo-bovis

ncbi_submitter: Massey University


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Alishewanella maricola

ncbi_submitter: CHUNG-ANG UNIVERSITY


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Sao Joaquim da Barra

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_country: Netherlands: Breda

ncbi_isolation_source: rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: unverisity medical center groningen


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Erwinia persicina

ncbi_submitter: INRA


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: Australia

ncbi_isolation_source: Casey Hospital

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Massachusetts General Hospital


ncbi_country: China: Guangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: zhejiang University


ncbi_country: Kenya

ncbi_submitter: SC


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter felis

ncbi_submitter: University of Antwerp, Belgium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptococcus pyogenes ABC020029706

ncbi_submitter: Broad Institute


ncbi_country: China: Ningxia

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Japan:Lake Kasumigaura

ncbi_isolation_source: Eutrophic water

ncbi_organism_name: Microcystis aeruginosa NIES-4264

ncbi_submitter: University of Tsukuba


ncbi_country: China: Hubei

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Proteus terrae

ncbi_submitter: Shang Hai Ocean University


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_submitter: UIUC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Michigan


ncbi_organism_name: Nisaea sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA

ncbi_organism_name: Monoglobus pectinilyticus

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Rutgers University


ncbi_submitter: SC


ncbi_organism_name: Candidatus Aldehydirespirator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lachnoanaerobaculum gingivalis

ncbi_submitter: EMG


ncbi_country: Czech Republic

ncbi_isolation_source: clinical sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, Charles University


ncbi_organism_name: Enterobacter sichuanensis

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_organism_name: Bosea sp. EC-HK365B

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. EC-HK365B


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: gut

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: University of Alabama at Birmingham


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB243_495N3

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 1997-10


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-b_bin-586

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_assembly_name: IMG-taxon 2623620618 annotated assembly

ncbi_organism_name: Halomonas sp. HL-93

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: IMG-taxon 2698536749 annotated assembly

ncbi_organism_name: Roseibium suaedae


ncbi_organism_name: Streptosporangiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Pseudogracilibacillus sp.

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: feces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Canada: Frelighsburg; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas sp. B21-031

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Altaica


ncbi_assembly_name: freshwater MAG --- Loc090907-4m_bin-093

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Cedecea sp. VD32

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: South China Sea

ncbi_isolation_source: surface water

ncbi_organism_name: Mameliella alba

ncbi_submitter: Ponticoccus lacteus JL351 (MCCC 1A11888) is available from MCCC (Marine Culture Collection of China) (http://www.mccc.org.cn/).

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SCOA6006

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_country: Papua New Guinea

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: Rumen uncultured genome RUG13781

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Rikenella sp.


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Singapore: Singapre

ncbi_isolation_source: stool

ncbi_organism_name: Shigella flexneri

ncbi_strain_identifiers: E

ncbi_submitter: Genome Institute of Singapore


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Brachymonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antwerp


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Candidatus Limousia pullorum

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Limousia;s__Candidatus Limousia pullorum


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IIT Roorkee


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_organism_name: Ralstonia wenshanensis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Senegalimassilia sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Ocean

ncbi_organism_name: Prochlorococcus marinus str. SS2

ncbi_submitter: MIT


ncbi_country: Australia: Brisbane

ncbi_organism_name: Coprococcus sp.

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Jena

ncbi_isolation_source: rectal swab neonate

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_country: Germany

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: South China Agricultural University


ncbi_country: Norway

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Dazhou

ncbi_isolation_source: Pickle

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Southwest University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: dental plaque

ncbi_submitter: Institute of Bioprocess and Biosystems Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus;x__Streptococcus sobrinus DSM 20742 = ATCC 33478


ncbi_organism_name: Paenibacillus mucilaginosus KNP414

ncbi_submitter: College of Life Sciences, Zhejiang Sci-Tech University


ncbi_organism_name: Streptomyces sp. NPDC000151

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Glycomyces sp. NPDC049804


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.493 MAG

ncbi_isolate: bin.493 MAG

ncbi_isolation_source: North Atlantic

ncbi_organism_name: Puniceicoccaceae bacterium MED-G32

ncbi_strain_identifiers: bin.493 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_country: USA: GA

ncbi_isolation_source: ready to eat deli meat low sodium turkey

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Staphylococcus sp. HMSC14C08

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)


ncbi_country: USA: Seatle

ncbi_isolation_source: clinical

ncbi_submitter: IFSC USP


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Birmingham


ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Teagasc


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Thermodesulfovibrionales bacterium


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: India: Nazareth Hospital; Laitumkhrah; Shillong; Meghalaya

ncbi_isolation_source: misisng

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universite Paris Sud


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Spain: Santa pola

ncbi_isolation_source: banquettes

ncbi_organism_name: Rhodothermaceae bacterium

ncbi_submitter: University of Alicante


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: EMG


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA47179

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: milk samples

ncbi_submitter: ANIWHA


ncbi_country: Austria

ncbi_submitter: Medical University of Vienna


ncbi_isolation_source: Food poisoning; feces

ncbi_strain_identifiers: NCTC 74

ncbi_submitter: Pharmacology and Toxicology Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Megamonas funiformis


ncbi_organism_name: Clavibacter zhangzhiyongii

ncbi_submitter: University of Tehran


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3117-1

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Absiella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Heliobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_country: South Korea: Namjeju

ncbi_isolation_source: Potato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: National Institute of Agricultural Sciences, RDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: India: Chattanahalli; Hassan district; Karnataka

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: EPFL


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil

ncbi_organism_name: Spirosoma radiotolerans

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Lund University


ncbi_assembly_name: IMG-taxon 2622736593 annotated assembly

ncbi_organism_name: Bizionia paragorgiae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Streptomyces sp. NPDC006314


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0361

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 0022

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Human feces

ncbi_organism_name: Veillonella sp. LMAG:2

ncbi_submitter: The University of Tokyo


ncbi_country: Kenya: Laikipia

ncbi_isolation_source: swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Kiloniellales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan: Nagano; Nakabusa

ncbi_isolation_source: Section of microbial mat collected from hot spring water

ncbi_organism_name: Synechococcus sp. Nb3U1

ncbi_submitter: University of Montana


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Thammasat University


ncbi_organism_name: Variovorax sp. VNK109

ncbi_submitter: Kyonggi university


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Semmelweis University


ncbi_assembly_name: freshwater MAG --- KR_bin-4102

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Nodosilinea sp.

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-a_bin-290

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0309

ncbi_submitter: Broad Institute


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: COPD W2c

ncbi_submitter: Chengdu University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: wastewater

ncbi_organism_name: Geotalea uraniireducens

ncbi_submitter: Nagoya Institute of Technology


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Slovenia: Ljubljana

ncbi_isolation_source: Commercial bio-nematicide formulation; VOTiVO FS (Bayer CropScience; Germany)

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Agricultural Institute of Slovenia


ncbi_country: Canada: BC

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Bureau of Food Surveillance and Science Integration


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG12429

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Salmonella sp. s58592

ncbi_submitter: Zhejiang university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_submitter: Toho University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: Canada: Smith s Cove; Nova Scotia

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: Tift Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Achromobacter mucicolens

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Belarus: Vileyka District

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: BIM B-439D

ncbi_submitter: Institute of Microbiology, Belarus National Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Austin

ncbi_isolation_source: bee gut

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Instituto Gulbenkian de Ciencia


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_submitter: South China Agricultural University


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Novosphingobium marinum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Denmark

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_isolation_source: yogurt

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_country: China: Wuhan

ncbi_isolation_source: soil from campus of Hubei University of Traditional Chinese Medicine

ncbi_organism_name: Pseudomonas sp. B707


ncbi_country: China: Zhengzhou

ncbi_isolation_source: stool

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_organism_name: Leclercia sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: Cheese

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Singapore

ncbi_isolation_source: water

ncbi_organism_name: Acinetobacter tandoii

ncbi_submitter: Nanyang Technological University


ncbi_assembly_name: acinetobacter baumannii isolate  strainM

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: M

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_organism_name: Bartonella grahamii

ncbi_submitter: SC


ncbi_organism_name: Photorhabdus laumondii subsp. laumondii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: India: Chandigarh

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: Brazil:Santa Catarina; Governador Celso Ramos

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Norway: Bergen

ncbi_isolation_source: tissue

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Centre National de la Recherche Scientifique (C.N.R.S)


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Poland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Alabama

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: Iran: Persian Gulf; Asalouyeh

ncbi_isolation_source: marine surface water

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Rakuno Gakuen University; Mansoura University; Zewail City of Science and Technology


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Neobacillus niacini

ncbi_submitter: Auburn University


ncbi_country: South Africa:Stellenbosch

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Streptomyces caniferus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Ardenticatenia bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Frankiales bacterium

ncbi_submitter: EPFL


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus sp. FSL W8-0445

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL W8-0445


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: uncultured Desulfobacula sp.


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium


ncbi_organism_name: Salmonella sp. SAL04175

ncbi_submitter: Zhejiang university


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: ZC4 (Zoo Composter number 4) at the Sao Paulo Zoo

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: uncultured Nostoc sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Afghanistan: Kabul

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russia Research Anti-Plague Institute "Microbe"


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Czech Republic

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Taiwan

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Goldcoast


ncbi_organism_name: Haemophilus influenzae F3031

ncbi_submitter: The Wellcome Trust Sanger Institute


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: GDMCC 1.372

ncbi_submitter: Guangdong Academy of Sciences


ncbi_country: Thailand:Bangkok; Pomprab market

ncbi_isolation_source: pork

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn university


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Kibdelosporangium persicum

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Dialister sp.


ncbi_country: Gambia

ncbi_isolation_source: lung

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Murdoch Children's Research Institute


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: China

ncbi_isolation_source: chicken carcass

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Marine fish farm

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Italy

ncbi_isolation_source: mozzarella cheese

ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: Institute of Sciences of Food Production (ISPA)


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine


ncbi_country: Australia

ncbi_isolation_source: Chardonnay

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 10071A

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: France

ncbi_isolation_source: pharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas gingeri

ncbi_submitter: Wageningen University & Research


ncbi_country: United Kingdom: Wigan

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Fundacao Oswaldo Cruz


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas sp. Root71

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Xanthomonas nasturtii


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: KAMDHENU UNIVERSITY


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8773

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Ruminococcaceae bacterium D16

ncbi_submitter: Broad Institute


ncbi_country: China: Hunan

ncbi_isolation_source: sediment

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Austria

ncbi_isolation_source: nose

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: environmental

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus S11444


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: IMG-taxon 2599185216 annotated assembly

ncbi_organism_name: Psychrobacter pacificensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Vidalia Region; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: CIRAD


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: South Korea

ncbi_isolation_source: paddy soil

ncbi_organism_name: Cellulomonas citrea

ncbi_submitter: Mokwon University, Korea


ncbi_organism_name: Streptomyces sp. NPDC014805

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: Bulgaria

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: USA: Nebraska

ncbi_isolation_source: spinach (foodborne isolate)

ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: Hall 4834

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: soil

ncbi_organism_name: Mycobacterium paraintracellulare

ncbi_submitter: Seoul National University


ncbi_country: China: Sichuan

ncbi_isolation_source: Mount Qingcheng

ncbi_organism_name: Streptomyces populi

ncbi_submitter: SiChuan University


ncbi_country: China: Guangzhou

ncbi_isolation_source: drainage

ncbi_organism_name: Morganella morganii

ncbi_submitter: The First Affiliated Hospital of Sun Yat sen University


ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: human blood

ncbi_submitter: Osaka Institute of Public Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Algeria

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM U1045


ncbi_submitter: Henan Agricultural University


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-153

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_strain_identifiers: new MAG-153

ncbi_submitter: Micoorganism


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of East Anglia


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: USA: Michigan State University Extension; Berrien County; Michigan

ncbi_isolation_source: leaf

ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: University of Chicago


ncbi_country: South Korea: Seoul

ncbi_isolation_source: estuary water

ncbi_organism_name: Nitratireductor rhodophyticola

ncbi_submitter: Chung-Ang university


ncbi_organism_name: uncultured Capnocytophaga sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Pseudomonadota bacterium


ncbi_submitter: Sichuan University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_assembly_name: Rumen uncultured genome RUG11670

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: LBMM 6411

ncbi_submitter: University of the Basque Country


ncbi_country: China: Jinhua

ncbi_isolation_source: ascites

ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinhua Central Hospital


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AM-2014-D1_bin-541

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Minnesota Department of Health Infectious Disease Laboratory Submission Group


ncbi_organism_name: Pectobacterium sp. CHL-2024

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Colorado

ncbi_isolation_source: hyporheic zone

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: China

ncbi_isolation_source: Eye secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital College of Medicine Zhejiang University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Antarctica: Mackay Glacier regions; Towle Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Queensland


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_organism_name: Bacillus thuringiensis serovar aizawai

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar aizawai


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology