ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


gtdb_representative: f

ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: SAR86 cluster bacterium AG-313-D15

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium AG-313-D15


ncbi_assembly_level: Scaffold

ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site B

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Cyanobium usitatum str. Tous

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_level: Complete Genome

ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: India: Vellore

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC130

ncbi_submitter: Christian Medical College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Arraial do Cabo

ncbi_isolation_source: liver

ncbi_organism_name: Enterovibrio baiacu

ncbi_submitter: Federal University of Rio de Janeiro

ncbi_type_material_designation: assembly from type material


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 61 year old woman who was hospitalized in ICU

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Kyushu University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_isolation_source: rat gut

ncbi_organism_name: Peptococcaceae bacterium UBA7061

ncbi_submitter: University of Queensland


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2585428043 annotated assembly

ncbi_organism_name: Pseudoxanthobacter soli DSM 19599

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: France: Marseille

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: IHU Mediterranee Infections


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Stenotrophomonas maltophilia R551-3

ncbi_submitter: US DOE Joint Genome Institute


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Ideonella sp.

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-156-04_S3_C2

ncbi_submitter: IGS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Leuconostoc inhae KCTC 3774

ncbi_strain_identifiers: KCTC 3774

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;s__Leuconostoc inhae;x__Leuconostoc inhae KCTC 3774


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolate: YNMS

ncbi_organism_name: Candidatus Profftella armatura

ncbi_strain_identifiers: YNMS

ncbi_submitter: School of Life Sciences and Food Engineering

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Betaproteobacteria;o__;f__;g__Candidatus Profftella;s__Candidatus Profftella armatura

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Profftella;s__Candidatus Profftella armatura


ncbi_organism_name: Sideroxyarcus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Gemmiger formicilis


ncbi_isolate: SPRUCE 216

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_strain_identifiers: SPRUCE 216

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: SponGES


ncbi_organism_name: uncultured Synechococcus sp.


ncbi_organism_name: uncultured Caldisericales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: RADBOUD UNIVERSITY


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Thailand: Phitsanulok

ncbi_submitter: Cardiff University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica bacterium RIFCSPLOWO2_02_FULL_45_16


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Ireland

ncbi_isolation_source: Pleural swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University College Cork


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Paracoccaceae bacterium


ncbi_organism_name: Staphylococcus sp. GDY8P55P

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Acetobacter sp. DmW_125124

ncbi_submitter: Brigham Young University


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: Lung tissues

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_isolation_source: Wound

ncbi_strain_identifiers: T MSSA 02 (S)

ncbi_submitter: SC


ncbi_country: China: Shenzhen Mangrove

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Peribacillus acanthi

ncbi_submitter: Shenzhen University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_country: USA: District of Columbia

ncbi_isolation_source: Fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_46_14


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Conexibacter woesei

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Skin

ncbi_organism_name: Staphylococcus warneri


ncbi_organism_name: Paenibacillus illinoisensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_country: USA: Great Salt Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Desulfobacteraceae bacterium UBA2156

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: New England Biolabs


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_level: Chromosome

ncbi_organism_name: Tolypothrix tenuis PCC 7101

ncbi_submitter: Toyohashi University of Technology


ncbi_country: South Korea: Incheon

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Kordia aestuariivivens

ncbi_submitter: Sungkyunkwan University


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Falsiroseomonas sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Paracoccaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_assembly_name: Salmonella enterica CVM 43755 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_isolation_source: lung aspirate

ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Halofilum sp. (in: g-proteobacteria)

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Ectothiorhodospiraceae;g__Halofilum;x__unclassified Halofilum (in: g-proteobacteria);s__Halofilum sp. (in: g-proteobacteria)


ncbi_country: USA: MS

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Transconjugant 16A

ncbi_submitter: Univ Mississippi Medical Center


ncbi_country: Japan: Tokyo

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 3 20 to 25cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_country: USA: North Carolina

ncbi_isolation_source: root

ncbi_organism_name: Bradyrhizobium sp. YR681

ncbi_submitter: Oak Ridge National Lab


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kasetsart University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Streptomyces sp. NBC_00566

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Bangladesh

ncbi_isolation_source: not available

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: SC


ncbi_organism_name: Hoylesella shahii

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: CREA


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_isolation_source: gut

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Candidatus Vicinibacter affinis

ncbi_submitter: Aalborg University


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Marinomonas sp.


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_isolate: E. coli

ncbi_isolation_source: Bacterial culture

ncbi_organism_name: Escherichia coli J53

ncbi_strain_identifiers: E. coli

ncbi_submitter: INSERM, IAME, UMR 1137


ncbi_organism_name: Longimicrobiaceae bacterium


ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;x__unclassified Candidatus Krumholzibacteriota;s__Candidatus Krumholzibacteriota bacterium


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_isolation_source: stool

ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Scotland

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: lichen metagenome

ncbi_organism_name: uncultured Granulicella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_assembly_name: NCSR_106 Hybrid assembly

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: France

ncbi_isolation_source: Bronchial aspiration

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Roseobacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_submitter: University hospital Lubeck


ncbi_country: Estonia

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: University of Tartu


ncbi_country: Thailand

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Methylocystis sp.


ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: The Ohio State University


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: UIUC


ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Devosia equisanguinis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California San Diego


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_strain_identifiers: 79w winter

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Jinan University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_country: Norway: Viken

ncbi_isolation_source: Milk filter

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: Bdellovibrio sp. HCB209

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gallibacterium anatis

ncbi_strain_identifiers: SCPM-O-B-15494 (Shiryaevo PSK-5)

ncbi_submitter: SRCAMB


ncbi_organism_name: Salmonella enterica

ncbi_submitter: wenzhou Medical university


ncbi_country: Iran: Mashhad

ncbi_isolation_source: soil

ncbi_organism_name: Kocuria rhizophila

ncbi_strain_identifiers: RF

ncbi_submitter: Malek-Ashtar University of Technology


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Sneathia sp.


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Blautia faecis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Maridesulfovibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Anode biofilm

ncbi_organism_name: Geobacter sp. UBA7696

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_isolation_source: caecum

ncbi_organism_name: Cellulomonas cellasea

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Xanthomonas dyei

ncbi_submitter: Oregon State University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWD2_43_10


ncbi_country: USA: San Francisco

ncbi_isolation_source: fetal intestine

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: UCSF


ncbi_organism_name: Pseudoalteromonas neustonica

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: Bradyrhizobium sp. LA6.10

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: milk from an udder

ncbi_organism_name: Streptococcus uberis C5388

ncbi_submitter: University of Nottingham


ncbi_country: Ghana: Eastern Region

ncbi_isolation_source: cancer patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: West African Centre for Cell Biology of Infectious Pathogen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_country: China: Tibet

ncbi_organism_name: Cnuella takakiae

ncbi_submitter: Capital Normal University


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: NanJing University


ncbi_organism_name: Vibrio cholerae V51

ncbi_submitter: Broad Institute


ncbi_organism_name: Vibrio tasmaniensis

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Brazil

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Planktophila lacus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila lacus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila lacus


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Fredinandcohnia sp. FSL W7-1320

ncbi_submitter: Penn State


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: France: Rennes

ncbi_isolation_source: blood

ncbi_submitter: University of Rennes 1


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter thiooxydans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus pneumoniae PCS125219

ncbi_submitter: Washington University


ncbi_country: Australia: Bundaberg

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: La Trobe University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG126

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: United Kingdom: England

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_isolation_source: feces (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: France

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_strain_identifiers: CNCM I 4644

ncbi_submitter: Federal University of Minas Gerais


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: EMG


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_isolation_source: sludge from N2O producing bioreactor

ncbi_organism_name: Comamonadaceae bacterium CD01

ncbi_submitter: Stanford University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_46_24


ncbi_isolation_source: soil around the Arctic Ocean

ncbi_organism_name: Pseudomonas fragi A22

ncbi_submitter: BGI


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Australia: Melbourne

ncbi_isolation_source: other

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Loc090519-1m_bin-0327

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Department of Molecular Biology and Biotechnology, Graduate School of Biomedical and Health Sciences, Hiroshima University


ncbi_country: Brazil: Canaa dos Carajas

ncbi_isolation_source: surface water and sediment from copper mine drainage

ncbi_submitter: Brazilian Microbiome Project

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Microsaccharimonas;s__Candidatus Microsaccharimonas sossegonensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Microsaccharimonas;s__Candidatus Microsaccharimonas sossegonensis


ncbi_country: Pakistan: Burewala; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. Bo_7

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Tibet

ncbi_isolation_source: moraine soil

ncbi_organism_name: Sphingomonas glaciei

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces griseobrunneus

ncbi_submitter: Hunan Microbiology Institute


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptomyces sp. S1

ncbi_strain_identifiers: bgisy039;rhizosphere soil of Talipariti tiliaceum

ncbi_submitter: BGI Research


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Paraburkholderia madseniana

ncbi_submitter: University of Illinois at Chicago


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_organism_name: Flavipsychrobacter sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Polynucleobacter necessarius


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shandong

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Shandong University


ncbi_country: Sweden

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_country: Ireland

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_country: South Korea: Gangwon Province

ncbi_isolation_source: Feces of Naemorhedus caudatus

ncbi_organism_name: Comamonas sp. Y33R10-2

ncbi_submitter: Kyung Hee University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Ireland: Dublin

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Trinity College Dublin


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: India

ncbi_isolation_source: sediment

ncbi_organism_name: Streptomyces sp. DASNCL-427

ncbi_submitter: CSIR NCL


ncbi_organism_name: Raoultella sp. 18051

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Sphingobium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Crater lake; Baengnokdam; Hallasan Mountain; Jeju island

ncbi_organism_name: Deinococcus radiodurans

ncbi_submitter: Korea Atomic Energy Research Institute


ncbi_country: Lebanon: Beirut

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Productos Lacteos de Asturias (IPLA-CSIC)


ncbi_country: Saudi Arabia:Rabigh harbor lagoon

ncbi_isolation_source: Red Sea lagoons-Mangrove Mud

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Anaerococcus hydrogenalis DSM 7454

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: BGI-Shenzhen


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_submitter: Chang Gung Memorial Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Pakistan: Lahore

ncbi_organism_name: Ochrobactrum sp. 23A/997/2015

ncbi_submitter: USDA-ARS


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Australia: Melbourne

ncbi_isolation_source: other

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Pirellulaceae bacterium


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum;x__Mycobacterium tuberculosis variant africanum MAL010128


ncbi_organism_name: Leclercia adecarboxylata


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: Gastric biopsy

ncbi_submitter: University of Western Australia


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Kasetsart University


ncbi_isolation_source: marine water

ncbi_organism_name: K189A clade bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__K189A clade;s__K189A clade bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 4

ncbi_organism_name: Mycolicibacterium llatzerense

ncbi_submitter: University of Glasgow


ncbi_country: USA: East Boothbay; Maine

ncbi_isolation_source: single cell amplified by WGA-X

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__unclassified Candidatus Marinamargulisbacteria;s__Candidatus Marinamargulisbacteria bacterium SCGC AG-410-N11


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_isolate: AMADBNGC

ncbi_organism_name: Candidatus Stammera capleta

ncbi_strain_identifiers: AMADBNGC

ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_organism_name: Brenneria roseae subsp. roseae

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Russia

ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: GUR

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Klebsiella sp. GG_Kp136

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-1342

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium bifidum


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. cavernau

ncbi_strain_identifiers: cavernau

ncbi_submitter: Tecnologico de Monterrey


ncbi_submitter: BGI-Shenzhen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Minisyncoccota bacterium


ncbi_country: China

ncbi_isolation_source: 20 years wild ginseng rhizosphere soil

ncbi_organism_name: Variovorax sp. J22R115

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Australia

ncbi_isolation_source: Viognier

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Eubacterium album

ncbi_submitter: College of life sciences


ncbi_organism_name: Microbacterium resistens NBRC 103078

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Methylobacterium sp. Leaf112

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: zhejiang University


ncbi_country: China: Wenzhou

ncbi_isolation_source: Drainage fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: wenzhou medical university


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI


ncbi_organism_name: uncultured Romboutsia sp.

ncbi_submitter: EMG


ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: University of British Columbia


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-1750

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: University of Fribourg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Los Alamos National Lab


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: Institute for Sustainable Agriculture - CSIC


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Puniceispirillales bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__Candidatus Puniceispirillales bacterium


ncbi_submitter: Monash University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Streptomyces sp. NPDC048405

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AGROSAVIA


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Spain: Asturias

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: China: Shanghai

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: School of Agriculture and Biology, Shanghai Jiao Tong University


ncbi_organism_name: Pantoea vagans

ncbi_submitter: University of Georgia


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Glutamicibacter sp. NPDC090743


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_assembly_name: freshwater MAG --- LJ-3-9m_bin-225

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium sp. HMSC034H07

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Pacific Ocean

ncbi_isolation_source: marine environment

ncbi_organism_name: Synechococcus sp. BIOS-U3-1

ncbi_submitter: Station Biologique de Roscoff (CNRS - Sorbonne University)


ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_submitter: Central Queensland University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_country: South Africa

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Denmark: Slagelse

ncbi_submitter: Region Zealand


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Serratia plymuthica

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Kordiimonadaceae bacterium UBA4149

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Wayne State University


ncbi_country: India: Gujarat; Surat

ncbi_isolation_source: soil from decomposing logs of textile industry

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: KL University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Portland

ncbi_isolation_source: indoor dust from athletic faciility gym

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: Northwestern University


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Japan


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2032

ncbi_submitter: Broad Institute


ncbi_country: China: Liuyang City; Hunan Province

ncbi_isolation_source: bacterial wilt of Tobacco plant

ncbi_organism_name: Pantoea endophytica

ncbi_submitter: Marine Agriculture Research Center


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13659

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CDC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: thermophilic environment

ncbi_organism_name: Anoxybacillus sp. PDR2

ncbi_submitter: Jiangxi agricultural university


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Clostridium sp. CAG:510


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus TUSH6001


ncbi_assembly_name: IMG-taxon 2675903031 annotated assembly

ncbi_organism_name: Paenibacillus naphthalenovorans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Fimbriiglobus sp.

ncbi_submitter: Sichuan University


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: US Food and Drug Administration


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: Rectal swab

ncbi_submitter: JCVI


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: South Korea

ncbi_isolation_source: sea sediment

ncbi_organism_name: Arenibacterium halophilum

ncbi_submitter: Chung-Ang University


ncbi_country: Canada: Waterloo; Ontario

ncbi_isolate: LW2 Bin 74_3

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_strain_identifiers: LW2 Bin 74_3

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Papua New Guinea

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Asaia bogorensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: EMG


ncbi_country: Singapore

ncbi_isolation_source: supermarket

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not available


ncbi_organism_name: Mycolicibacterium sp. GCM10028919

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: caecum

ncbi_organism_name: Alistipes sp. An116

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Streptomyces misionensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_submitter: Loyola University Chicago


ncbi_country: India

ncbi_isolate: RL

ncbi_isolation_source: microbial mat of Manikaran Hot Spring

ncbi_organism_name: Ralstonia sp. RL

ncbi_strain_identifiers: RL

ncbi_submitter: University of Delhi


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Leucobacter luti

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Raoultella ornithinolytica


ncbi_organism_name: Escherichia coli PCN061

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Laos

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Clostridium tunisiense

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Mucispirillum sp.


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Frankiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: sponge

ncbi_organism_name: uncultured bacterium

ncbi_submitter: university of alicante


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Northeast Normal University


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Monash University


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Acetobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolate: metabat2_XCR1_HOM_6756_bwa.42 MAG

ncbi_strain_identifiers: metabat2_XCR1_HOM_6756_bwa.42 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Roseomonas mucosa

ncbi_submitter: Igenbio, Inc


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: Poland

ncbi_isolation_source: food/cold -smoke salmon

ncbi_organism_name: Rahnella aquatilis

ncbi_submitter: Poznan University of Life Sciences


ncbi_country: Malaysia

ncbi_isolation_source: Bitter gout

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Malaya


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: stool sample from 52 year old healthy male

ncbi_organism_name: Carnobacterium sp. N15.MGS-251

ncbi_submitter: The Mayo Clinic


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom:Truro

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Candidatus Sphingomonas colombiensis

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_assembly_name: freshwater MAG --- LJ-3-9m_bin-347

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Region Zealand


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Shanghai MasScience Genomics Core

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Denmark

ncbi_isolation_source: throat swab

ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: Aarhus University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: University of Trento


ncbi_country: Finland: Olkiluoto Island

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfarculus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Bos Taurus

ncbi_organism_name: Desulfovibrio sp. G11

ncbi_submitter: WUR


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Singapore

ncbi_isolation_source: air

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Paraburkholderia xenovorans LB400


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Lung

ncbi_organism_name: Mycoplasmopsis cynos


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG13074

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_submitter: University of Illinois at Urbana Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Campylobacter lari

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Devosia pacifica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_assembly_name: Rumen uncultured genome RUG10966

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_isolation_source: Caecum


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: Australia: VIC6.1

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: University of queensland


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Korea Polar Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Italy

ncbi_submitter: University of Bologna


ncbi_isolation_source: enrichment cultures HLUCC-A and HLUCC-O from microbial mat sample

ncbi_organism_name: Marinobacter excellens HL-55

ncbi_submitter: Pacific Northwest National Laboratroy


ncbi_country: USA: Pivers Island (Duke Marine Lab); NC

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_country: China: Liaoning

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Moldova

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: IMG-taxon 2667527386 annotated assembly

ncbi_organism_name: Halopseudomonas salegens

ncbi_strain_identifiers: CECT 8338

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Ardenticatenaceae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Rhodococcus sp. 24CO

ncbi_submitter: INBIOP

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 24CO


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2024EL-00234


ncbi_organism_name: Leucobacter sp.

ncbi_submitter: University of Fribourg


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University Laval


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Hebei University


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Vitoria

ncbi_isolation_source: Bone fragment

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Enterocloster citroniae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pantoea anthophila

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Ancrocorticia populi


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL010110

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_isolation_source: human

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine