ncbi_country: United Kingdom: Wales

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: USA: Florida

ncbi_genome_representation: full

ncbi_organism_name: Rhizobium anhuiense bv. trifolii

ncbi_refseq_category: reference genome

ncbi_submitter: Skolkovo Institute of Science and Technology


ncbi_assembly_level: Contig

ncbi_country: Indonesia

ncbi_isolation_source: whole organism

ncbi_organism_name: Wolbachia endosymbiont of Drosophila ananassae

ncbi_submitter: University of Maryland Baltimore


ncbi_assembly_level: Scaffold

ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: JiangSu

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: China

ncbi_isolation_source: Lymphaden

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_organism_name: Gallionella sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Solibacillus sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Denmark

ncbi_isolation_source: Bacteremia

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Department of Molecular Medicine (MOMA) - Aarhus University Hospital


ncbi_country: United Kingdom:High Wycombe

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Streptomyces cinereospinus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Citrobacter braakii

ncbi_strain_identifiers: FDAARGOS 1422

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Leeuwenhoekiella blandensis

ncbi_submitter: University of Queensland


gtdb_type_species_of_genus: t

ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_organism_name: Schaedlerella arabinosiphila

ncbi_submitter: Temasek Life Sciences Laboratory


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus sp. CF8_St5-12

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_organism_name: Elainellales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_country: Australia: Brisbane

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Queensland


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: forest pond

ncbi_organism_name: Rhodocyclus tenuis

ncbi_submitter: Xiamen University


ncbi_isolation_source: unknown

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_assembly_level: Chromosome

ncbi_isolation_source: Brassica rapa subsp. pekinensis

ncbi_submitter: CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CN01


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI


ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Brucella melitensis

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_isolation_source: urine

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Korea University


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: USFDA


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: saline water including plankton

ncbi_submitter: Uppsala University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia producta

ncbi_submitter: University of Chicago


ncbi_country: Peru

ncbi_isolation_source: oil contaminated environment

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Lachnospiraceae bacterium 1_4_56FAA

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- KTt_bin-2783

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Comamonas sp. UBA7840

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Clostridium sp.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_submitter: Quadram Institutte


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: South Africa

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_submitter: The University of Sydney


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID4939

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Candidatus Fusicatenibacter merdavium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_submitter: University of Wyoming


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Roseburia hominis


ncbi_assembly_name: IMG-taxon 2623620609 annotated assembly

ncbi_organism_name: Micromonospora coxensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: cold seep

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Fusobacterium polymorphum ATCC 10953

ncbi_submitter: Shenzhen University


ncbi_isolate: AOP25_B1_surf _bin _21

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP25_B1_surf _bin _21

ncbi_submitter: Genoscope


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: BGI Research


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Salmonella sp. NW598

ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Maimonides Biomedical Research Institute of Cordoba


ncbi_organism_name: Candidatus Ventrisoma faecale

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Ventrisoma;s__Candidatus Ventrisoma faecale

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Ventrisoma;s__Candidatus Ventrisoma faecale


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thermodesulfobacteriota bacterium


ncbi_country: China: Tianjin

ncbi_organism_name: Priestia filamentosa

ncbi_submitter: Tianjin University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Pune; Maharashtra

ncbi_organism_name: Shouchella clausii

ncbi_strain_identifiers: GMN

ncbi_submitter: MACS Agharkar Research Institute, Pune (MS) India


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Monash University


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- Umea_bin-04410

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: IMG-taxon 2602042067 annotated assembly

ncbi_organism_name: Enterobacter sp. NFIX58

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: University of Georgia in Athens; GA

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; hindgut

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium OttesenSCG-928-A14


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Panama: Panama City

ncbi_organism_name: Candidatus Stammera capleta

ncbi_submitter: Emory University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_country: USA: California

ncbi_isolation_source: crown gall

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: USDA-ARS


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Hong Kong

ncbi_isolation_source: root system

ncbi_organism_name: Algoriphagus kandeliae

ncbi_submitter: Shenzhen University


ncbi_assembly_name: SOV

ncbi_organism_name: Sporomusa ovata DSM 2662

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Sporomusaceae;g__Sporomusa;s__Sporomusa ovata;x__Sporomusa ovata DSM 2662


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_assembly_name: IMG-taxon 2585428064 annotated assembly

ncbi_organism_name: Thermosyntropha lipolytica DSM 11003


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Arthrobacter sp. Leaf137

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Pseudomonas putida NBRC 14164

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas putida group;s__Pseudomonas putida;x__Pseudomonas putida NBRC 14164


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium GW2011_GWB1_42_41


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: India

ncbi_isolation_source: wood borer insect

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: OSMANIA UNIVERSITY


ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: Yangtze University


ncbi_country: Australia: Adelaide Hills; SA

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: Warwickshire

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas syringae pv. delphinii

ncbi_strain_identifiers: ICMP 4330

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. delphinii


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Kaifeng; Henan Province

ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_country: USA: Alaska

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Paenibacillus sp. PastF-1

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jeonbuk National University


ncbi_country: USA

ncbi_isolation_source: Host lymph node biopsy

ncbi_organism_name: Granulibacter bethesdensis

ncbi_submitter: Igenbio, Inc


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Barnesiella sp.

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Radboud University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment

ncbi_organism_name: Sutcliffiella horikoshii

ncbi_submitter: Cinvestav


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Czech Republic: Mlnk

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Charles University in Prague


ncbi_country: India: Gujarat

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Atlantibacter hermannii


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Prevotella sp.


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Japan

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Spain

ncbi_isolation_source: Rectum

ncbi_submitter: University of Antwerpen


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia intermedia


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual T

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_country: Germany

ncbi_isolation_source: Gut

ncbi_strain_identifiers: Isolate-084 (Janvier)

ncbi_submitter: UniKlinik RWTH Aachen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: skin lesion

ncbi_organism_name: Tenacibaculum dicentrarchi

ncbi_submitter: ADL Diagnostic Chile Ltda


ncbi_country: Germany: Koblenz

ncbi_isolation_source: cowhouse

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_country: China: Guangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 15E66

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S118-65274

ncbi_submitter: Zhejiang University


ncbi_organism_name: Deinococcus metalli

ncbi_strain_identifiers: CCTCC AB 2014198

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Celeribacter sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_organism_name: Dialister invisus


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Stygiobacter sp. GWC2_38_9

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Indonesia

ncbi_isolate: SIOISBB

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Leptolyngbya sp. SIOISBB

ncbi_strain_identifiers: SIOISBB

ncbi_submitter: UCSD


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: Creek Water

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Abaetetuba;x__Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640


ncbi_country: Colombia: Bogota

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: uncultured Arsenicicoccus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Capnocytophaga ochracea

ncbi_submitter: Hospital Sirio-Libanes


ncbi_country: Canada: Manitoba

ncbi_isolation_source: Knee

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: Salmonella sp. NW1238

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Pelolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudochrobactrum kiredjianiae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal University of Sao Paulo


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Mississippi State University


ncbi_organism_name: Archangiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: Neptunomonas sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Blautia faecis


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University hospital Lubeck


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Candidatus Bruticola sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy: d__Bacteria;p__Vulcanimicrobiota;c__Candidatus Xenobia;o__Candidatus Xenobiales;f__Candidatus Xenobiaceae;g__Candidatus Bruticola;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Candidatus Xenobia;o__Candidatus Xenobiales;f__Candidatus Xenobiaceae;g__Candidatus Bruticola;x__unclassified Candidatus Bruticola;s__Candidatus Bruticola sp.


ncbi_organism_name: Salmonella sp. NW263


ncbi_organism_name: Erwinia rhapontici

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos (INTA)


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Pseudaquabacterium rugosum

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Micromonospora sp. CPCC 205543

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_organism_name: Plesiocystis pacifica SIR-1

ncbi_submitter: The Gordon and Betty Moore Foundation Microbial Genome Sequencing project


ncbi_country: South Korea: Chungnam

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Streptococcus equinus

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Queensland


ncbi_organism_name: Muribaculaceae bacterium Isolate-084 (Janvier)

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: AgResearch


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Tang lab


ncbi_assembly_name: IMG-taxon 2639762576 annotated assembly

ncbi_organism_name: Gordonia malaquae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Netherlands

ncbi_isolation_source: umbilicus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Genomics Research Institute


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: Hemoculture

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_organism_name: Acinetobacter sp. NEB149

ncbi_submitter: NEB


ncbi_assembly_name: Rumen uncultured genome RUG11414

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Viet Nam: Hoai Duc; Ha Noi

ncbi_isolation_source: soil of tomato plants

ncbi_organism_name: Brevibacillus sp. HD3.3A

ncbi_submitter: ENDOBICA


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: groundwater

ncbi_organism_name: Gallionella sp.


ncbi_isolation_source: human skin

ncbi_organism_name: Comamonas testosteroni

ncbi_submitter: NIH/NHGRI


ncbi_assembly_name: IMG-taxon 2634166294 annotated assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium dentium;x__Bifidobacterium dentium JCM 1195 = DSM 20436


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-330

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bacteroidia bacterium

ncbi_strain_identifiers: new MAG-330

ncbi_submitter: Micoorganism

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Factory

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_submitter: University of California at Davis


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Russia: Uzon Caldera; Kamchatka; Zavarzin hot spring

ncbi_isolation_source: hot spring

ncbi_organism_name: Calditerrivibrio nitroreducens

ncbi_submitter: Laetitia Wilkins's shared submissions


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Clostridium sp. CAG:217

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Corynebacterium sp. 22KM0430

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Lentisphaerae bacterium GWF2_44_16

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerae bacterium GWF2_44_16


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Plague Control Research Institute of Siberia and Far East


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: Viet Nam

ncbi_isolation_source: chicken

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Japan

ncbi_isolation_source: Bos taurus

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: WTSI


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Korea: Seoul

ncbi_isolation_source: sputum sample

ncbi_organism_name: Mycobacterium paragordonae

ncbi_submitter: Seoul National University College of Medicine


ncbi_country: China: Beijing

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: USA: San Jacinto River sediment in Houston; Texas

ncbi_isolation_source: sediment

ncbi_organism_name: Acinetobacter venetianus

ncbi_submitter: University of Houston


ncbi_organism_name: Methylobacterium oxalidis

ncbi_submitter: Northwest Missouri State University


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Melbourne


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Thermotogaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: The Second Affiliated Hospital of Chongqing Medical University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_organism_name: uncultured Nocardioides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Russia: Moscow

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Gemmiger qucibialis


ncbi_country: Sweden: Kosterfjord

ncbi_isolation_source: Top-layer sediments

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: France: APHM

ncbi_isolation_source: blood

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14116

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shenzhen

ncbi_organism_name: Olsenella sp. TM06-36

ncbi_submitter: BGI


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic lake sediment

ncbi_organism_name: bacterium

ncbi_submitter: Universidad de la Republica


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: KEMRI


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Guizhou

ncbi_isolation_source: rock from karst cave

ncbi_organism_name: Paenisporosarcina cavernae

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Miltoncostaeaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Sphingorhabdus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Streptomyces luteogriseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean: Southern Mariana Trough

ncbi_isolation_source: marine hydrothermal vent chimney sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AM75-20pH9TA


ncbi_country: Ecuador: Quito

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Salmonella enterica

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Washington

ncbi_isolation_source: groundwater

ncbi_organism_name: Pelosinus fermentans B4

ncbi_submitter: ENIGMA


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_assembly_name: Gammaproteobacteria bacterium Ga0077536

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Gammaproteobacteria bacterium Ga0077536

ncbi_submitter: University of Glasgow


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Desulfobulbus sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_organism_name: Candidatus Versatilivorator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Versatilivoradales;f__Candidatus Versatilivoraceae;g__Candidatus Versatilivorator;x__unclassified Candidatus Versatilivorator;s__Candidatus Versatilivorator sp.


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: Monash University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Maryland


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-3391

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Chile: Yungay; Atacama Desert

ncbi_isolate: ATA bin29

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: ATA bin29


ncbi_organism_name: Cloacibacillus evryensis


ncbi_country: Japan

ncbi_isolation_source: cloacal swabs

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: NBRC 3959

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: South Africa: Durban

ncbi_isolation_source: Mahewu

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: The Federal Research Centre "Fundamentals of Biotechnology" of the Russian Academy of Sciences


ncbi_organism_name: uncultured Ruthenibacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: Vahe

ncbi_submitter: Kingston University London, United Kingdom


ncbi_country: Viet Nam

ncbi_isolation_source: shrimp (food)

ncbi_submitter: ANSES


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterococcus durans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Brochothrix sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Marinobacter nanhaiticus D15-8W

ncbi_submitter: Keio University


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Canada: Medicine Hat

ncbi_isolation_source: blood

ncbi_organism_name: Ligilactobacillus animalis

ncbi_submitter: Calgary Laboratory Services


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 223

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 4619

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Streptomyces sp. NPDC051104

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Sedimentibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__environmental samples;s__uncultured Sedimentibacter sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Spain

ncbi_isolation_source: organic material

ncbi_organism_name: Candidatus Portiera aleyrodidarum

ncbi_strain_identifiers: AF-CAI

ncbi_submitter: ICBIBE

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Johnevansiales;f__Candidatus Johnevansiaceae;g__Candidatus Portiera;s__Candidatus Portiera aleyrodidarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Johnevansiales;f__Candidatus Johnevansiaceae;g__Candidatus Portiera;s__Candidatus Portiera aleyrodidarum


ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: ITQB NOVA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Eshraghiella crossota


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: Radboud University


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Parolsenella catena

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: freshwater

ncbi_organism_name: Nostoc sp. FACHB-110

ncbi_submitter: South China Normal University


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfuricella sp.

ncbi_submitter: University of Waterloo


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tagaibacteriota;s__Candidatus Tagabacteria bacterium CG10_big_fil_rev_8_21_14_0_10_40_13


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Chlamydiia bacterium

ncbi_submitter: SponGES


ncbi_isolation_source: metagenome

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_assembly_name: uncultured Yoonia sp. EG16N_Bin1

ncbi_isolation_source: Octocoral

ncbi_submitter: iBB-IST


ncbi_country: Italy: Bresso; MI

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA: Washington DC

ncbi_isolation_source: Oropharynx

ncbi_organism_name: Metamycoplasma orale

ncbi_submitter: SC


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: East China University of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Children's Hospital affiliated to Zhejiang University School of Medicine


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_country: Australia: Townsville

ncbi_isolation_source: Tank water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mycobacterium sp. 4D054

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_country: Brazil: Sergipe

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: UFSEfl

ncbi_submitter: University of Sao Paulo


ncbi_country: Germany: Kiel

ncbi_isolation_source: compost

ncbi_organism_name: Serratia sp. MYb239

ncbi_submitter: Zoological Institute, Kiel University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. MYb239


ncbi_country: Canada

ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_strain_identifiers: ICMP 2740

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_strain_identifiers: OSS 912

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Janthinobacterium sp. GB1R12

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Streptomyces olivaceoviridis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Candidatus Aminicenantaceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Aminicenantaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Aminicenantaceae;x__unclassified Candidatus Aminicenantaceae;s__Candidatus Aminicenantaceae bacterium


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Streptomyces althioticus


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Okayama University


ncbi_country: China: Beijing

ncbi_isolation_source: food

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: University of Tehran


ncbi_country: France

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: well water

ncbi_submitter: Shandong University


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Spain: Asturias

ncbi_organism_name: Acidipropionibacterium acidipropionici

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Chunlab


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Actinomyces urogenitalis

ncbi_submitter: University of California, Berkeley


ncbi_country: Georgia: Tbilisi

ncbi_isolation_source: feces

ncbi_submitter: Eliava IBMV

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kottbus


ncbi_organism_name: Pseudomonas sp. JV414

ncbi_submitter: UMR5557 Laboratoire d'Ecologie Microbienne


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDK8D58P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: Italy: Napoli

ncbi_isolation_source: Respiratory Sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_isolation_source: stool

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Capital Institute of Pediatrics,Beijing, China


ncbi_country: Iran

ncbi_isolation_source: C. sinensis

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Nonomuraea sp. NPDC049377

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Paeniclostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:r:-


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus OCMM6096

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom: London

ncbi_isolation_source: sputum

ncbi_submitter: Imperial College London


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Germany: Kiel

ncbi_isolation_source: food

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Erysipelothrix sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Lactobacillus johnsonii


ncbi_assembly_name: Rumen uncultured genome RUG12870

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: NC

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_assembly_name: freshwater MAG --- MJ111018B_bin-0213

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_submitter: EMG


ncbi_submitter: University of Waterloo


ncbi_country: Russia: Moscow region

ncbi_isolation_source: poultry respiratory system

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: SRCAMB


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- MJ120827A_bin-457

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_submitter: Huzhou CDC


ncbi_country: Germany: Aachen

ncbi_isolation_source: Feces

ncbi_organism_name: Hominisplanchenecus faecis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0364

ncbi_submitter: Broad Institute


ncbi_country: Canada: Waterloo

ncbi_isolate: SO_2017_CLC bin 54

ncbi_isolation_source: leachate from a composite leachate cistern at an active municipal landfill in Southern Ontario

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_strain_identifiers: SO_2017_CLC bin 54


ncbi_organism_name: Nonomuraea cavernae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Arthrobacter sp. FW305-BF8

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: Taiwan: New Taipei

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: geothermal spring

ncbi_organism_name: Thermochromatium tepidum ATCC 43061

ncbi_submitter: Northern Illinois University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: State of Palestine: Hebron

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Parolsenella massiliensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Queensland


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Synechococcaceae bacterium WB4_1_0192

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Megasphaera massiliensis


ncbi_organism_name: Heyndrickxia faecalis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Paludibacter sp.


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Solibacillus silvestris

ncbi_submitter: Johannes Gutenberg-University


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agriculture University


ncbi_organism_name: Parabacteroides distasonis


ncbi_submitter: Institut Pasteur


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Pakistan

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: China

ncbi_isolation_source: Out-of-house environment

ncbi_submitter: South China Agricultural University


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA4502

ncbi_submitter: University of Queensland


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Dermabacter hominis

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_country: Hungary

ncbi_isolation_source: trachea

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: SA H32

ncbi_submitter: University of Pecs


ncbi_country: Germany

ncbi_isolation_source: bronchial secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Cleveland Clinic


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Shanghai Ocean University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Ningbo city

ncbi_isolation_source: island sediment

ncbi_organism_name: Pontibacter vulgaris

ncbi_submitter: Ningbo University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: CDI patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: China: Guangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ST11 CRKP11

ncbi_submitter: PLA Southern Theater General Hospital


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 159

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Cornell University


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: feces

ncbi_submitter: World Institute of Kimchi


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: branches

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: shihezi university


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Stanford Healthcare


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Sichuan University


ncbi_country: Iran: Larestan City; Fars Province

ncbi_isolation_source: rhisospheric desert soil

ncbi_organism_name: Promicromonospora iranensis

ncbi_submitter: University of Tehran


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: KS

ncbi_isolation_source: bovine liver abscess

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: US Food and Drug Administration


ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_country: China

ncbi_isolation_source: anaerobic digsetion effluent

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: Duke University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of California, Santa Barbara


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Penn State


ncbi_country: Bangladesh: Dhaka; Benga

ncbi_isolation_source: fecal sample of diarrhea patient

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_submitter: SC


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG11

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Psychroflexus sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_country: China: shantou

ncbi_isolation_source: ocean

ncbi_organism_name: Rhodococcus ruber

ncbi_submitter: shantou university


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: rectal swab

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: Michigan

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: University of Michigan


ncbi_organism_name: Treponema pallidum subsp. pertenue

ncbi_submitter: Masaryk University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Annandale-on-Hudson; NY

ncbi_isolation_source: grass soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Bard College


ncbi_organism_name: Xanthomonas campestris pv. incanae

ncbi_strain_identifiers: CFBP 1606R

ncbi_submitter: CNRS


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_taxonomy: d__Bacteria;p__;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Babeliaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Babeliaceae;x__environmental samples;s__uncultured Candidatus Babeliaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: China Center of Industrial Culture Collection


ncbi_organism_name: Escherichia coli

ncbi_submitter: UTsouthwestern Medical Center


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Alistipes sp. CAG:268

ncbi_submitter: DTU


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: F3183_PFGE 2A

ncbi_submitter: SC


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Streptomyces achromogenes

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_organism_name: uncultured Bradyrhizobium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Norway

ncbi_isolation_source: Head ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.0 m chemocline layer of meromictic lake

ncbi_organism_name: Candidatus Oleincola secundus

ncbi_submitter: Academia Sinica

ncbi_taxonomy: d__Bacteria;p__Atribacterota;c__Candidatus Phoenicimicrobiia;o__Candidatus Pheonicimicrobiales;f__Candidatus Stramentimicrobiaceae;g__Candidatus Oleincola;s__Candidatus Oleincola secundus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;c__Candidatus Phoenicimicrobiia;o__Candidatus Pheonicimicrobiales;f__Candidatus Stramentimicrobiaceae;g__Candidatus Oleincola;s__Candidatus Oleincola secundus


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_organism_name: Heyndrickxia faecalis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Rivularia sp. (in: cyanobacteria)

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Rivulariaceae;g__Rivularia;x__unclassified Rivularia (in: cyanobacteria);s__Rivularia sp. (in: cyanobacteria)


ncbi_organism_name: Flavobacteriales bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_submitter: Istituto di Scienze Biomediche della Difesa


ncbi_organism_name: Escherichia coli

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Peribacillus sp. NPDC097295

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Greece

ncbi_isolation_source: water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Agricultural University of Athens


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Mahidol University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P35B

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P35B


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Candidatus Palauibacter ramosifaciens

ncbi_submitter: University of Queensland

ncbi_taxonomy: d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter ramosifaciens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter ramosifaciens


ncbi_country: Turkey

ncbi_isolation_source: hot spring

ncbi_organism_name: Brevibacillus gelatini

ncbi_submitter: NCAUR-ARS-USDA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Morganella morganii

ncbi_submitter: Wenzhou Medical University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Sidra Medicine


ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-4459

ncbi_organism_name: uncultured Pirellula sp.

ncbi_submitter: BILS


ncbi_country: Cameroon: Bokwai; South West Province

ncbi_isolation_source: red cocoyam roots

ncbi_organism_name: Pseudomonas sp. CMR5c

ncbi_submitter: JLU


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: mBioClim


ncbi_country: Japan: Ogasawara Island; Tokyo

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas phenolica O-BC30

ncbi_submitter: University of California San Diego


ncbi_organism_name: Candidatus Sphingomonas phytovorans

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Toronto


ncbi_country: China: Liaoning

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas glycinae

ncbi_submitter: Liaoning Research Institute of Cash Crops


ncbi_country: India: Jogad area; Little Rann of Kutch; Gujarat

ncbi_isolation_source: Desert soil

ncbi_organism_name: Desertibacillus haloalkaliphilus

ncbi_submitter: National Centre For Cell Science (NCCS)


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridium celatum

ncbi_submitter: University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli O157:H7 str. K5602

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K5602


ncbi_organism_name: Enterococcus casseliflavus

ncbi_strain_identifiers: Gar RS 8

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UNIVERSITY OF ST ANDREWS


ncbi_organism_name: Variovorax sp. RCC_210

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_isolation_source: burned soil

ncbi_organism_name: Tardiphaga sp.

ncbi_submitter: Colorado State University


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Pullilachnospira;s__Candidatus Pullilachnospira stercoravium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: SAHMRI


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_country: China: Jiaxing; Zhejiang

ncbi_isolation_source: pork

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus mutans


ncbi_isolate: Listeria monocytogenes strain AB199

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: Listeria monocytogenes strain AB199

ncbi_submitter: Institute of Biotechnology, University of Helsinki


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 314

ncbi_organism_name: Staphylococcus pasteuri

ncbi_strain_identifiers: SNUC 5329

ncbi_submitter: University of Calgary