ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: China: Zhejiang

ncbi_genome_representation: full

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_country: Australia: Great Barrier Reef

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Synechococcus sp. SB0662_bin_14

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Guangdong

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: South China Agricultural University


ncbi_country: Spain

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: Canada: Montreal

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Clostridium sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Mariprofundus sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Pseudomonas yamanorum

ncbi_submitter: University of Tuebingen


ncbi_country: United Kingdom: Scotland; near Pitlochry; Perthshire; diseased horse chestnut tree

ncbi_organism_name: Pseudomonas amygdali pv. aesculi

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. aesculi


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Washington


ncbi_organism_name: Escherichia coli 908524

ncbi_submitter: Washington University


ncbi_organism_name: Leuconostoc falkenbergense

ncbi_submitter: Teagasc


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Queensland


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Malaysia

ncbi_submitter: Universiti Tunku Abdul Rahman


ncbi_country: China: Weihai

ncbi_isolation_source: offshore sediment

ncbi_organism_name: Arenibacter sp. S6351L

ncbi_submitter: Shandong University,Weihai


ncbi_country: Antarctica

ncbi_organism_name: Corynebacterium pygosceleis

ncbi_submitter: Masaryk University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Denmark: Ega

ncbi_isolation_source: activated sludge from Ega_18-Q3-R5-49

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Alteromonadales bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprobacillus sp.

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_country: Bangladesh: Mymensingh

ncbi_isolation_source: Raw milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zoonosis Science Center


ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: uncultured Atopobium sp.


ncbi_country: Russia

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus mitis 13/39

ncbi_submitter: Research Institute of Physical-Chemical Medicine, Moscow, Russia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus mitis group;s__Streptococcus mitis;x__Streptococcus mitis 13/39


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacillus sp. Ab-1751

ncbi_submitter: UW-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Ab-1751


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Turicibacter sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylovulum sp.

ncbi_submitter: University of Calgary


ncbi_country: United Kingdom:England

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: animal

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: XYSN

ncbi_submitter: Yangzhou University


ncbi_organism_name: Candidatus Saccharimonadaceae bacterium

ncbi_submitter: Washington University School of Medicine

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;x__unclassified Candidatus Saccharimonadaceae;s__Candidatus Saccharimonadaceae bacterium


ncbi_country: Australia: Fitzroy Valley; Queensland

ncbi_organism_name: Bradyrhizobium sp. CB82

ncbi_submitter: Murdoch University


ncbi_organism_name: Planktomarina sp.

ncbi_submitter: Clemson University


ncbi_country: USA

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Salmonella sp. NW1057

ncbi_submitter: Sichuan University


ncbi_organism_name: Glutamicibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: Italy: Monte Argentario; Grosseto

ncbi_isolation_source: twig

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: Metagenomic sequencing for Xylella fastidiosa detection in Monte Argentario


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Teagasc FOod Research Centre


ncbi_organism_name: Pseudomonas taetrolens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Winogradskyella poriferorum

ncbi_submitter: Shantou University


ncbi_isolate: SPRUCE 9

ncbi_organism_name: Endomicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 9

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Parabacteroides merdae


ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nigde Omer Halisdemir University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Bilifractor sp. LCP21S3_E12

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Pseudolabrys sp.


ncbi_organism_name: Pseudoruminococcus massiliensis


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Zurich


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Ilumatobacteraceae bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured bacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus avium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Escherichia coli

ncbi_submitter: Finnish Food Authority


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Nanchang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: EMG


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Treponema sp.

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Marinobacter salsuginis

ncbi_submitter: National Institute of Technology and Evaluation (NITE)


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Xanthomonas rydalmerensis

ncbi_submitter: NSW Department of Primary Industries


ncbi_submitter: Centre for Food Safety


ncbi_organism_name: uncultured Rivularia sp.


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Prolixibacteraceae bacterium UBA4818

ncbi_submitter: University of Queensland


ncbi_country: USA: Texas

ncbi_submitter: United States Department of Agriculture


ncbi_country: Indonesia: Central Java; Karimun Jawa Islands; Sea waters of Taka Cemara

ncbi_isolation_source: water

ncbi_organism_name: Qipengyuania flava

ncbi_submitter: Functional Genomics Section, Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University


ncbi_isolation_source: Sinus

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: University of Michigan


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Japan

ncbi_organism_name: Anaeromassilibacillus sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Norway

ncbi_isolation_source: raw chicken

ncbi_organism_name: Pseudomonas sp. MF6776

ncbi_submitter: Nofima


ncbi_organism_name: Acinetobacter sp. XH1639

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_country: Finland

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter bizzozeronii

ncbi_submitter: King's College London

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Kandleria sp. UBA3685


ncbi_country: China

ncbi_isolation_source: drainage fluid

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: Top soil

ncbi_organism_name: Paraburkholderia domus

ncbi_refseq_category: reference genome

ncbi_submitter: GHENT UNIVERSITY


ncbi_assembly_name: Rumen uncultured genome RUG14504

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Denmark

ncbi_isolation_source: Amyloid arthropaty

ncbi_organism_name: Enterococcus faecalis EnGen0063

ncbi_submitter: Broad Institute


ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Cornell University


ncbi_organism_name: Dissulfurispiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: minced meat bovine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0917


ncbi_country: Netherlands

ncbi_isolation_source: disinfectant-free drinking water; site 5

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Glasgow


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: USA: New York; University of Rochester

ncbi_isolation_source: laboratory

ncbi_submitter: University of Rochester School of Medicine & Dentistry


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Poland

ncbi_isolation_source: in vitro culture medium after sterylization by autoclaving

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Rzeszow Technology


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: freshwater MAG --- Ki2-D4_bin-0780

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Agathobaculum pullicola

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:914

ncbi_submitter: DTU


ncbi_organism_name: Ralstonia sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Streptomyces sp. NPDC088258

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Burkina Faso: Center; Ouagadougou

ncbi_isolation_source: uncooked sour wort of dolo; traditional sorghum malt beer

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus delbrueckii;sb__Lactobacillus delbrueckii subsp. jakobsenii;x__Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: University of East Anglia


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Roseburia faecis


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_country: China: Nankai University

ncbi_isolation_source: Dagang oil reservoir sewage

ncbi_organism_name: Aeribacillus pallidus

ncbi_submitter: Nankai University


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Frankia sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Paenibacillus alvei

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Yakult Central Institute


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-172

ncbi_submitter: Broad Institute


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: liver

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Sao Paulo


ncbi_submitter: The Gordon and Betty Moore Foundation Microbial Genome Sequencing project

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Thermoanaerobacteraceae;g__Caldanaerobacter;s__Caldanaerobacter subterraneus;sb__Caldanaerobacter subterraneus subsp. pacificus;x__Caldanaerobacter subterraneus subsp. pacificus DSM 12653


ncbi_isolation_source: bacterial strain isolated from gravelax salmon

ncbi_submitter: Ifremer


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of Vienna


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Marinobacter salarius

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: DHS Bioreactor

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Water Quality Control Lab, Division of Environmental Engineering, Faculty of Engineering, Hokkaido University


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: CFBP 8406

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Lysinibacillus sp. FSL K6-0075

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Lysinibacillus;x__unclassified Lysinibacillus;s__Lysinibacillus sp. FSL K6-0075


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: salt crust

ncbi_organism_name: Cyanobacteria bacterium QH_10_48_56

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium QH_10_48_56


ncbi_submitter: Shandong University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Philanthus triangulum


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Burbach

ncbi_isolation_source: PAH contaminated soil

ncbi_organism_name: Mycolicibacterium fluoranthenivorans

ncbi_submitter: Uppsala University


ncbi_country: Egypt

ncbi_isolation_source: urine

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Case Western Reserve University School of Medicine


ncbi_country: Spain: Burgos

ncbi_isolation_source: Necrotic lesion of AOD affected tree

ncbi_organism_name: Gibbsiella quercinecans

ncbi_submitter: Bangor University


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Tonsil crypt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Russia: Moscow

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: China: Guangdong Province

ncbi_isolation_source: forest soil

ncbi_organism_name: Methylovirgula sp. 4M-Z18

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_organism_name: Paraburkholderia sp. J63

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: South Korea: Seoul

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea University


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wuhan University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F29982

ncbi_submitter: Broad Institute


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: China: Anhui

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: France: Marseille; Timone Hospital

ncbi_isolation_source: osteoarticular infection

ncbi_organism_name: Corynebacterium massiliense DSM 45435

ncbi_submitter: Uni Bielefeld


ncbi_country: China

ncbi_isolation_source: pig

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium adolescentis


ncbi_isolation_source: faeces

ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Actinobacteria bacterium UBA1967

ncbi_submitter: University of Queensland


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: Psychrobacter alimentarius JG102

ncbi_isolation_source: squid jeotgal

ncbi_organism_name: Psychrobacter alimentarius

ncbi_strain_identifiers: Psychrobacter alimentarius JG102

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SurvCARE


ncbi_isolation_source: farm environment

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: mixed sediment-water sample

ncbi_organism_name: Neomoorella glycerini

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Blastococcus sp. LR1

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: Xanthomonas citri pv. malvacearum

ncbi_strain_identifiers: Xcm TX4-attenuated

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. malvacearum


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Belgium

ncbi_isolation_source: tracheal aspiration

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: AAFC


ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: Shenzhen University


ncbi_country: China: Jiangsu

ncbi_isolation_source: bile

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: sputum

ncbi_submitter: JCVI


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_submitter: The Lu'an People's Hospital


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Slovenia

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: National laboratory for health, environment and food


ncbi_organism_name: Butyricimonas virosa


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_country: France

ncbi_submitter: CHU de Bicetre


ncbi_country: Turkey

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Black Sea Agricultural Research Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Companilactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Chile

ncbi_isolation_source: kelp gull (Larus dominicanus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: Berkeley; CA

ncbi_isolation_source: Base of eucalyptus tree in Eucalyptus Grove

ncbi_organism_name: Sporosarcina sp. P19

ncbi_submitter: University of Arizona


ncbi_isolation_source: vagina

ncbi_organism_name: Gardnerella pickettii JCP7659

ncbi_submitter: Washington University


ncbi_isolate: Pectobacterium versatile LMG2459

ncbi_isolation_source: plant

ncbi_organism_name: Pectobacterium versatile

ncbi_strain_identifiers: Pectobacterium versatile LMG2459

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Aurantimonas coralicida

ncbi_submitter: University of Southern California


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_isolation_source: freshwater

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Mitsuokella jalaludinii


ncbi_organism_name: Tetragenococcus muriaticus DSM 15685


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Campylobacter gracilis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG12611

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Balneolaceae bacterium UBA2956

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__unclassified Balneolaceae;s__Balneolaceae bacterium UBA2956


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Nanjing Tech university


ncbi_organism_name: Parasphingorhabdus sp.


ncbi_country: Germany

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Sneathia sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Steroidobacterales bacterium

ncbi_submitter: University of Galway


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Bartonella sp. AP285QHHD

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolate: SPRUCE 535

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_strain_identifiers: SPRUCE 535

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2025EL-00062


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Scatocola faecipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Binatus sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;x__unclassified Candidatus Binatus;s__Candidatus Binatus sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Bacteriology1, National Institute of Infectious Diseases - Japan


ncbi_organism_name: Microbacterium foliorum

ncbi_submitter: Aarhus University


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: uncultured Aestuariivirga sp.


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured beta proteobacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Italy

ncbi_isolation_source: Fishery products

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: Tunisia: Nabeul

ncbi_isolation_source: Plant

ncbi_organism_name: Bacillus sp. AnS8

ncbi_submitter: CBBC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AnS8


ncbi_country: South Korea: Bonghwa-Gun; Kyeongsangbuk-Do

ncbi_isolation_source: acidity of soil

ncbi_organism_name: Kitasatospora sp. MMS16-BH015

ncbi_submitter: Chungnam National University


ncbi_organism_name: Parabacteroides merdae


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B3-1-3

ncbi_submitter: Curtin University


ncbi_isolation_source: not provided

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: ningbo university


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Herbaspirillum sp. Sphag1AN

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Houston; TX

ncbi_isolation_source: vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Seattle University


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica


ncbi_country: USA: WA

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: University of Washington


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Thalassospira xiamenensis

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: United Kingdom: London

ncbi_isolation_source: Mouth

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Duncaniella muris


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: CRC RESIST


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_submitter: bioMerieux


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: Water

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. SHSN007


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Utah


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylovulum sp.

ncbi_submitter: University of Oklahoma


ncbi_country: China

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Syntrophomonas sp. UBA4968

ncbi_submitter: University of Queensland


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: seafood

ncbi_organism_name: Vibrio parahaemolyticus S152

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S152


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Paraeggerthella hongkongensis

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of California, Riverside


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolate: Nitrosomonas sp. RBC090

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Nitrosomonas sp.

ncbi_strain_identifiers: Nitrosomonas sp. RBC090

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Kazakhstan: West-Kazakhstan

ncbi_isolation_source: tissue

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-b_bin-591

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__environmental samples;s__uncultured Candidatus Peregrinibacteria bacterium


ncbi_isolation_source: spleen

ncbi_organism_name: Aeromonas caviae

ncbi_strain_identifiers: CECT 838

ncbi_submitter: Institut d'Investigacio Biomedica Sant Pau


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp A-8

ncbi_strain_identifiers: Hp A-8

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidales bacterium UBA1797

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1797


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa607

ncbi_submitter: King Abdullah University Science and Technology


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_isolation_source: Blood or cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Region Zaeland, Denmark


ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Ekaterinburg

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Medical Research Center for Phthisiopulmonology and Infection Disease


ncbi_country: South Africa

ncbi_organism_name: Brucella canis F7/05A

ncbi_submitter: Broad Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Germany: North Rhine-Westphalia

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Justus-Liebig University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India

ncbi_organism_name: Mycobacterium sp. IS-1742

ncbi_submitter: JCVI


ncbi_country: China: Heilongjiang

ncbi_isolation_source: gut

ncbi_submitter: Harbin Medical University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T55959


ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of Iowa


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Switzerland: St. Gallen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Laboratory Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


gtdb_type_species_of_genus: t

ncbi_country: USA: New York

ncbi_isolation_source: pure bacterial culture

ncbi_organism_name: Fructilactobacillus fructivorans

ncbi_submitter: Cornell University


ncbi_country: USA

ncbi_isolation_source: Food Associated Environment


ncbi_organism_name: Pseudonocardia yunnanensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_country: France

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_isolation_source: Turkey diagnostic

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Selenomonas noxia

ncbi_submitter: EMG


ncbi_country: USA: MI

ncbi_isolation_source: feces (Equus ferus caballus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_country: Australia: River Torrens

ncbi_isolation_source: river water

ncbi_organism_name: Stenotrophomonas sp. Sm10

ncbi_submitter: Medical Research Future Fund


ncbi_isolate: TSB 2

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: TSB 2

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Rongchang; Chongqing

ncbi_organism_name: Aeromonas caviae

ncbi_strain_identifiers: SCMS

ncbi_submitter: Southwest University


ncbi_isolation_source: Caecum

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: stool

ncbi_organism_name: Coprococcus comes

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: CA

ncbi_isolation_source: Raw cream

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Planococcus sp. X10-3

ncbi_submitter: Inner mongolia normal university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Planococcus;x__unclassified Planococcus (in: firmicutes);s__Planococcus sp. X10-3


ncbi_organism_name: Streptococcus sp. HJ1

ncbi_submitter: Kyungpook National Univeristy


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China:Yunnan province

ncbi_isolation_source: native outdoor hot spring sediment

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Fudan University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Mount Kenya University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Slovakia

ncbi_isolation_source: hospital

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Comenius University in Bratislava, Faculty of Natural Sciences


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: State of Palestine: Beit Jala

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolate: E. coli

ncbi_isolation_source: Bacterial culture

ncbi_organism_name: Escherichia coli J53

ncbi_strain_identifiers: E. coli

ncbi_submitter: INSERM, IAME, UMR 1137


ncbi_organism_name: Bacteroides caecimuris


ncbi_country: USA: Michigan State University Extension; Berrien County; Michigan

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Chicago


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: freshwater lake; 80 m depth

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Chile

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Maricaulis sp.

ncbi_submitter: Xiamen University


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Perlucidibaca sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Roseburia sp. OM04-10BH

ncbi_submitter: BGI


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: FL Keys

ncbi_isolation_source: coral tissue

ncbi_organism_name: Cohaesibacter sp.

ncbi_submitter: NOAA/UM


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Day6-2_bin-227

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCLR17_040

ncbi_submitter: University of California, Irvine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_country: China: Nanchang

ncbi_isolation_source: rectal swab from healthy participants

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: beijing


ncbi_country: Turkey: Ordu

ncbi_isolation_source: marine sediment

ncbi_organism_name: Micromonospora globispora

ncbi_submitter: Newcastle University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli O121:H19 str. 06-3822

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O121:H19;x__Escherichia coli O121:H19 str. 06-3822


ncbi_country: Poland

ncbi_organism_name: Citrobacter sp. wls710

ncbi_submitter: NanKai universit


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0453

ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: Hemoculture

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Colon

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA:New York Erie

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: Cornell University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Bangladesh: Hajiganj

ncbi_isolation_source: Human feces

ncbi_submitter: icddr,b


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: The University of Tennessee


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Octadecabacter sp.

ncbi_submitter: Yantai University


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Russia: Moscow

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Micropepsaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil

ncbi_isolation_source: secretion

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Sweden

ncbi_isolation_source: Industry; environment

ncbi_organism_name: Brucella pituitosa

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Capnocytophaga sp. G2

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: freshwater MAG --- Erken-D10_bin-0462

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS


ncbi_country: China

ncbi_isolation_source: Waste water treatment plant

ncbi_organism_name: Citrobacter sp. W4

ncbi_submitter: Shandong University


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE4

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: China: Shanghai

ncbi_isolation_source: Chicken heart

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Pacific Ocean: near California; USA

ncbi_isolation_source: brain

ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: california state university long beach


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium RIFCSPLOWO2_12_FULL_41_16


ncbi_isolation_source: Whiting skin

ncbi_organism_name: Photobacterium piscicola

ncbi_submitter: UVEG


ncbi_country: Belize: Carrie Bow Cay

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pseudoalteromonas sp. PAST1

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: IAHAHI

ncbi_submitter: Kingston University London, United Kingdom


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Netherlands

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Phocaeicola coprophilus


ncbi_organism_name: Clostridium perfringens


ncbi_organism_name: Streptococcus agalactiae GB00904

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pricia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Jutongia sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Cypionkella sinensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Streptomyces sp. NPDC005494


ncbi_organism_name: uncultured Brevundimonas sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Silvibacterium sp.


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Chlorobiota bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__environmental samples;s__uncultured Chlorobiota bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__environmental samples;s__uncultured Candidatus Competibacteraceae bacterium


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 50-5646


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured bacterium


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_country: China: Shenzhen

ncbi_isolation_source: Throat swab 19

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: biochar-amended oxisol soil plot 4

ncbi_organism_name: Frateuria sp.

ncbi_submitter: Arizona State University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru

ncbi_isolation_source: String method

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institue


ncbi_country: Thailand: Hat Yai City; Songkhla province

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Staphylococcus aureus VET1054S

ncbi_submitter: Broad Institute


ncbi_assembly_name: IMG-taxon 2663763600 annotated assembly

ncbi_organism_name: Pseudomonas cuatrocienegasensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Australia: Brisbane

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_assembly_name: Rumen uncultured genome RUG14761

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Germany: near Munchenroda; Jena

ncbi_isolation_source: pine forrest soil between two spruce trees

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Atlantic Ocean: Ireland West coast

ncbi_isolation_source: marine sponge

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University College Cork


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. CFSAN001629


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Campylobacter upsaliensis JV21

ncbi_submitter: Baylor College of Medicine


ncbi_country: Switzerland: Bernese Oberland; Baerenschacht

ncbi_isolation_source: water pool in the karst cave

ncbi_organism_name: Rhodoferax sp. TS-BS-61-7

ncbi_submitter: Biology Center CAS IHB


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Bangladesh

ncbi_isolation_source: tomato plant roots

ncbi_organism_name: Klebsiella sp. HSTU-Sny5

ncbi_submitter: Hajee Mohammad Danesh Science and Technology University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway

ncbi_isolation_source: Bakery industry product

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Nofima


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Oklahoma City; OK

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: LSU health Sciences Center


ncbi_country: Australia: New South Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Jyvaskyla


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 21


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: CFE, University of Coimbra


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_country: South Korea: Keum River

ncbi_isolation_source: freshwater

ncbi_organism_name: Flavobacterium keumense

ncbi_submitter: Gachon University


ncbi_country: Russia


ncbi_organism_name: Streptomyces sp. NPDC006430

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Dyadobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: China: Guangzhou

ncbi_isolation_source: Rabbit testicles

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: Southern Medical University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Brazil

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_isolation_source: metagenome

ncbi_organism_name: Stenotrophomonas acidaminiphila

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: lake water

ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Azospirillum sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: China Agricultural University


ncbi_country: USA: Delaware

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium japonicum

ncbi_submitter: VEIL Bradyrhizobium group


ncbi_isolate: AOP42_A1_surf _bin _13

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP42_A1_surf _bin _13

ncbi_submitter: Genoscope


ncbi_country: USA: Arkansas

ncbi_isolation_source: shrimp

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: Finland

ncbi_organism_name: Polynucleobacter alcilacus

ncbi_submitter: University of Innsbruck


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides nordii


ncbi_country: Turkey: Duzce

ncbi_organism_name: Flavobacterium lipolyticum

ncbi_submitter: Erciyes University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Caccovivens faecavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Caccovivens;s__Candidatus Caccovivens faecavium


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Queensland


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: FNCPS 3

ncbi_submitter: HSE University


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Exiguobacterium artemiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium artemiae


ncbi_organism_name: Streptomyces sp. NPDC059176


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC048511


ncbi_organism_name: Pseudomonas petroselini

ncbi_submitter: Brigham Young University


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hangzhou Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Zytex Biotech Pvt Ltd


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Ralstonia sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Full-scale methanogenic bioreactor treating purified terephthalic acid process wastewater

ncbi_organism_name: Syntrophus sp. PtaB.Bin001

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Syntrophia;o__Syntrophales;f__Syntrophaceae;g__Syntrophus;x__unclassified Syntrophus (in: bacteria);s__Syntrophus sp. PtaB.Bin001


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA4827


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Australia

ncbi_isolation_source: dairy

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: FRR B 2987

ncbi_submitter: Queensland Health


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Ministry of Primary Industries


ncbi_isolation_source: lake water

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Corona

ncbi_isolation_source: Activated sludge

ncbi_organism_name: Sporomusa sphaeroides DSM 2875

ncbi_submitter: University of California-Riverside


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_organism_name: Phocaeicola vulgatus ATCC 8482

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus;x__Phocaeicola vulgatus ATCC 8482


ncbi_isolate: Salmonella Dublin

ncbi_isolation_source: Morbier Cheese

ncbi_strain_identifiers: Salmonella Dublin

ncbi_submitter: University of Westminster

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Micromonospora sp. NPDC023644

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Poland: Gdansk

ncbi_isolation_source: cyanobacteria culture

ncbi_organism_name: Arthrospiribacter ruber

ncbi_submitter: University of Gdansk


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S047_66759


ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: Germany

ncbi_isolation_source: carrot

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Paratractidigestivibacter faecalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Serbia: Rimski Sancevi

ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_submitter: University of Exeter


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: Japan

ncbi_isolation_source: stool smaple of an emperor tamarin

ncbi_organism_name: Bifidobacterium imperatoris

ncbi_submitter: Korea University


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Switzerland

ncbi_isolation_source: milk sample

ncbi_submitter: University of Lausanne


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; seawater

ncbi_organism_name: Prochlorococcus sp. AG-311-D23


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field NE area of North Tower vent

ncbi_isolation_source: biosyringe of microbial iron mat on a black smoker

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: University of Bergen


ncbi_organism_name: Hydrogenimonas thermophila

ncbi_submitter: Third Institute Of Oceanography,Ministry of Natural Resources


ncbi_country: Denmark: Aarhus

ncbi_organism_name: Cutibacterium acnes


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Stenotrophomonas sepilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: European Bioinformatics Institute


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_submitter: Swiss Tropical and Public Health Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_organism_name: Methyloradius sp.


ncbi_country: USA: New York; NY

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MSKCC


ncbi_isolation_source: Environmental; Gladiolus sp.

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Wenzhou-Kean University: Kean University - Wenzhou Campus


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_country: South Korea: Gwangju

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: intestine of adult

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_strain_identifiers: KCTC 3128

ncbi_submitter: Korea University


ncbi_country: USA: Massachusetts; Martha s Vineyard

ncbi_organism_name: Hyphobacterium sp. CCMP332

ncbi_submitter: University of Arkansas


ncbi_assembly_name: freshwater MAG --- MJ130702A_bin-250

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Microtetraspora sp. NBRC 13810

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: India: Gujarat

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Akkermansia sp. Phil8

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: South Korea: Jeju Moon Island

ncbi_organism_name: Streptomyces sp. MMBL 11-1

ncbi_strain_identifiers: MMBL 11-1

ncbi_submitter: Inha university


ncbi_organism_name: Serratia ficaria

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus sp. HMSC064D12

ncbi_submitter: The Genome Institute at Washington University